6SPB Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6SPB_001 | 1/A/59:68 | No text annotation | homologous HL_7RQB_001 NA | |
| HL_6SPB_002 | 1/A/87:96 | No text annotation | homologous HL_5J7L_135 NA | |
| HL_6SPB_003 | 1/A/123:128 | No text annotation | homologous HL_4WF9_003 HL_75660.7 | |
| HL_6SPB_004 | 1/A/137:142 | No text annotation | geometric HL_1WZ2_007 HL_75660.7 | |
| HL_6SPB_005 | 1/A/158:168 | No text annotation | homologous HL_5J7L_138 NA | |
| HL_6SPB_006 | 1/A/194:201 | No text annotation | geometric HL_5J7L_139 NA | |
| HL_6SPB_007 | 1/A/225:230 | No text annotation | homologous HL_5J7L_140 NA | |
| HL_6SPB_008 | 1/A/246:252 | No text annotation | homologous HL_7RQB_008 NA | |
| HL_6SPB_009 | 1/A/299:306 | T-loop with 2 stacked bulged bases | geometric HL_5J7L_142 NA | |
| HL_6SPB_010 | 1/A/313:317 | No text annotation | homologous HL_4WF9_011 HL_75660.7 | |
| HL_6SPB_011 | 1/A/321:329 | T-loop with unstacked turn | homologous HL_7RQB_012 NA | |
| HL_6SPB_012 | 1/A/373:383 | No text annotation | homologous HL_5J7L_145 NA | |
| HL_6SPB_013 | 1/A/401:408 | Pseudoknot geometry | homologous HL_5J7L_146 NA | |
| HL_6SPB_014 | 1/A/453:458 | GNRA | homologous HL_7RQB_015 NA | |
| HL_6SPB_015 | 1/A/478:484 | GNRA | homologous HL_5J7L_148 NA | |
| HL_6SPB_016 | 1/A/533:541 | No text annotation | ||
| HL_6SPB_017 | 1/A/556:565 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_150 NA | |
| HL_6SPB_018 | 1/A/601:607 | No text annotation | homologous HL_5J7L_151 NA | |
| HL_6SPB_019 | 1/A/619:624 | GNRA | homologous HL_5J7L_152 NA | |
| HL_6SPB_020 | 1/A/631:637 | No text annotation | homologous HL_7RQB_021 NA | |
| HL_6SPB_021 | 1/A/702:709 | GNRA wlth tandem sheared | homologous HL_5J7L_154 NA | |
| HL_6SPB_022 | 1/A/734:743 | No text annotation | homologous HL_4WF9_023 HL_50204.1 | |
| HL_6SPB_023 | 1/A/769:775 | UNCG variation | homologous HL_7A0S_023 HL_51020.2 | |
| HL_6SPB_024 | 1/A/816:821 | No text annotation | homologous HL_5J7L_157 NA | |
| HL_6SPB_026 | 1/A/945:952 | GNRA | homologous HL_4WF9_027 HL_34789.4 | |
| HL_6SPB_027 | 1/A/968:975 | No text annotation | homologous HL_5J7L_160 NA | |
| HL_6SPB_029 | 1/A/1160:1167 | No text annotation | geometric HL_2Y9H_005 HL_44506.2 | |
| HL_6SPB_030 | 1/A/1209:1214 | GNRA | homologous HL_5J7L_164 NA | |
| HL_6SPB_031 | 1/A/1268:1276 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_165 NA | |
| HL_6SPB_032 | 1/A/1311:1317 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_166 NA | |
| HL_6SPB_033 | 1/A/1350:1355 | GNRA | homologous HL_5J7L_167 NA | |
| HL_6SPB_034 | 1/A/1376:1385 | No text annotation | homologous HL_4WF9_035 HL_77449.1 | |
| HL_6SPB_035 | 1/A/1437:1448 | No text annotation | ||
| HL_6SPB_036 | 1/A/1479:1485 | No text annotation | homologous HL_7RQB_038 NA | |
| HL_6SPB_038 | 1/A/1555:1558 | No text annotation | homologous HL_7RQB_039 NA | |
| HL_6SPB_039 | 1/A/1602:1609 | No text annotation | homologous HL_7RQB_040 NA | |
| HL_6SPB_040 | 1/A/1620:1626 | GNRA | homologous HL_5J7L_174 NA | |
| HL_6SPB_041 | 1/A/1681:1686 | UNCG | geometric HL_4V9F_044 HL_61337.3 | |
| HL_6SPB_043 | 1/A/1739:1743 | No text annotation | homologous HL_7RQB_044 NA | |
| HL_6SPB_044 | 1/A/1764:1774 | No text annotation | homologous HL_5J7L_178 NA | |
| HL_6SPB_045 | 1/A/1793:1798 | GNRA related | homologous HL_5J7L_179 NA | |
| HL_6SPB_048 | 1/A/1936:1944 | No text annotation | homologous HL_5J7L_182 NA | |
| HL_6SPB_049 | 1/A/2014:2023 | No text annotation | homologous HL_4WF9_047 HL_78372.1 | |
| HL_6SPB_051 | 1/A/2196:2202 | No text annotation | homologous HL_5J7L_185 NA | |
| HL_6SPB_052 | 1/A/2235:2243 | No text annotation | homologous HL_7A0S_052 HL_11974.2 | |
| HL_6SPB_053 | 1/A/2251:2263 | No text annotation | homologous HL_5J7L_187 NA | |
| HL_6SPB_054 | 1/A/2288:2302 | No text annotation | geometric HL_4KR9_003 HL_16651.1 | |
| HL_6SPB_055 | 1/A/2311:2318 | Pseudoknot geometry | homologous HL_4WF9_052 HL_52651.2 | |
| HL_6SPB_056 | 1/A/2342:2349 | GNRA with extra cWW | homologous HL_4WF9_053 HL_87268.2 | |
| HL_6SPB_057 | 1/A/2361:2366 | GNRA | homologous HL_4WF9_054 HL_34789.4 | |
| HL_6SPB_058 | 1/A/2391:2400 | No text annotation | homologous HL_5J7L_192 NA | |
| HL_6SPB_059 | 1/A/2458:2466 | No text annotation | homologous HL_7A0S_059 HL_52011.1 | |
| HL_6SPB_060 | 1/A/2515:2522 | GNRA variation | homologous HL_5J7L_194 NA | |
| HL_6SPB_061 | 1/A/2538:2544 | No text annotation | homologous HL_4WF9_058 HL_48677.1 | |
| HL_6SPB_062 | 1/A/2581:2586 | GNRA | homologous HL_5J7L_196 NA | |
| HL_6SPB_064 | 1/A/2688:2693 | Ribsomal LSU H95 | homologous HL_5J7L_198 NA | |
| HL_6SPB_065 | 1/A/2732:2746 | No text annotation | homologous HL_5J7L_199 NA | |
| HL_6SPB_066 | 1/A/2782:2788 | UNCG variation | homologous HL_5J7L_200 NA | |
| HL_6SPB_067 | 1/A/2806:2814 | No text annotation | homologous HL_7RQB_068 NA | |
| HL_6SPB_068 | 1/A/2843:2848 | GNRA | homologous HL_5J7L_202 NA | |
| HL_6SPB_069 | 1/B/38:44 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_6SPB_070 | 1/B/86:90 | Mini UNCG | homologous HL_5J7L_204 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6SPB_071 | No text annotation | ||
| HL_6SPB_025 | No text annotation | ||
| HL_6SPB_072 | No text annotation | ||
| HL_6SPB_028 | No text annotation | ||
| HL_6SPB_037 | No text annotation | ||
| HL_6SPB_042 | No text annotation | ||
| HL_6SPB_074 | No text annotation | ||
| HL_6SPB_046 | GNRA | ||
| HL_6SPB_047 | No text annotation | ||
| HL_6SPB_050 | No text annotation | ||
| HL_6SPB_073 | No text annotation | ||
| HL_6SPB_063 | GNRA |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6SPB_001 | 1/A/24:30, 1/A/501:507 | Triple sheared with non-canonical cWW | geometric IL_5J7L_245 NA | |
| IL_6SPB_002 | 1/A/36:37, 1/A/433:435 | Single bulged A | homologous IL_7RQB_002 NA | |
| IL_6SPB_003 | 1/A/43:44, 1/A/425:427 | Minor groove platform | homologous IL_7A0S_003 IL_34520.3 | |
| IL_6SPB_004 | 1/A/81:85, 1/A/98:105 | Kink-turn | homologous IL_4WF9_004 IL_71972.1 | |
| IL_6SPB_005 | 1/A/183:184, 1/A/212:214 | Single stack bend | homologous IL_4WF9_007 IL_15011.2 | |
| IL_6SPB_006 | 1/A/188:194, 1/A/201:208 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_006 NA | |
| IL_6SPB_007 | 1/A/239:245, 1/A/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5J7L_251 NA | |
| IL_6SPB_008 | 1/A/279:282, 1/A/346:349 | Tandem non-canonical cWW pairs | geometric IL_5TBW_041 NA | |
| IL_6SPB_009 | 1/A/287:289, 1/A/337:341 | No text annotation | homologous IL_4WF9_014 IL_76658.1 | |
| IL_6SPB_010 | 1/A/297:299, 1/A/306:308 | Isolated non-canonical cWW pair | geometric IL_3BNR_007 IL_71625.3 | |
| IL_6SPB_011 | 1/A/472:475, 1/A/487:500 | No text annotation | geometric IL_5J7L_255 NA | |
| IL_6SPB_012 | 1/A/527:530, 1/A/544:547 | Double sheared | homologous IL_5J7L_256 NA | |
| IL_6SPB_013 | 1/A/554:556, 1/A/565:567 | Isolated non-canonical cWW pair | geometric IL_3BNR_012 IL_71625.3 | |
| IL_6SPB_014 | 1/A/596:600, 1/A/608:612 | AAA cross-strand stack | homologous IL_5J7L_258 NA | |
| IL_6SPB_015 | 1/A/662:664, 1/A/796:798 | Isolated non-canonical cWW pair | geometric IL_4WF9_020 IL_01003.3 | |
| IL_6SPB_016 | 1/A/664:668, 1/A/789:796 | tHW-tHW cross-strand stack | homologous IL_7RQB_018 NA | |
| IL_6SPB_017 | 1/A/687:688, 1/A/753:755 | Single bulged A | geometric IL_4V9F_025 IL_14190.2 | |
| IL_6SPB_018 | 1/A/692:693, 1/A/718:720 | Single bulged G | geometric IL_5J7L_262 NA | |
| IL_6SPB_019 | 1/A/693:697, 1/A/714:718 | Triple sheared | homologous IL_7RQB_021 NA | |
| IL_6SPB_020 | 1/A/728:730, 1/A/747:748 | Major groove platform | homologous IL_4WF9_026 IL_48076.8 | |
| IL_6SPB_021 | 1/A/731:733, 1/A/744:746 | Isolated non-canonical cWW pair | homologous IL_7A0S_020 IL_01003.3 | |
| IL_6SPB_022 | 1/A/765:767, 1/A/777:781 | Multiple bulged bases | geometric IL_5J7L_265 NA | |
| IL_6SPB_023 | 1/A/834:837, 1/A/919:924 | No text annotation | ||
| IL_6SPB_024 | 1/A/839:840, 1/A/915:917 | Single stack bend | homologous IL_5J7L_269 NA | |
| IL_6SPB_025 | 1/A/845:851, 1/A/904:910 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_5J7L_270 NA | |
| IL_6SPB_026 | 1/A/851:852, 1/A/902:904 | Minor groove platform | homologous IL_7RQB_028 NA | |
| IL_6SPB_027 | 1/A/853:858, 1/A/897:901 | No text annotation | geometric IL_4V9F_035 IL_38603.1 | |
| IL_6SPB_028 | 1/A/859:861, 1/A/894:896 | Isolated non-canonical cWW pair | homologous IL_5J7L_273 NA | |
| IL_6SPB_029 | 1/A/863:868, 1/A/887:892 | tSH-tHW-tHS-cWW | geometric IL_6DVK_004 IL_35186.2 | |
| IL_6SPB_031 | 1/A/984:986, 1/A/1150:1151 | Single bulged C | homologous IL_7RQB_035 NA | |
| IL_6SPB_032 | 1/A/988:992, 1/A/1144:1148 | UAA/GAN | homologous IL_5J7L_277 NA | |
| IL_6SPB_033 | 1/A/994:1001, 1/A/1141:1142 | SSU/LSU pseudoknot | homologous IL_5J7L_278 NA | |
| IL_6SPB_034 | 1/A/1001:1003, 1/A/1140:1141 | Single bulged U | geometric IL_5J7L_279 NA | |
| IL_6SPB_035 | 1/A/1008:1014, 1/A/1130:1135 | Kink-turn related | homologous IL_4WF9_039 IL_57188.6 | |
| IL_6SPB_036 | 1/A/1014:1021, 1/A/1113:1130 | No text annotation | ||
| IL_6SPB_037 | 1/A/1021:1024, 1/A/1111:1113 | Isolated non-canonical cWW pair | homologous IL_5J7L_282 NA | |
| IL_6SPB_038 | 1/A/1027:1032, 1/A/1104:1108 | No text annotation | ||
| IL_6SPB_039 | 1/A/1032:1045, 1/A/1094:1104 | No text annotation | ||
| IL_6SPB_041 | 1/A/1183:1185, 1/A/1234:1237 | Isolated cWS basepair | homologous IL_4WF9_044 IL_42997.5 | |
| IL_6SPB_042 | 1/A/1189:1193, 1/A/1227:1230 | No text annotation | homologous IL_5J7L_287 NA | |
| IL_6SPB_043 | 1/A/1195:1202, 1/A/1221:1225 | Kink-turn | homologous IL_5J7L_288 NA | |
| IL_6SPB_044 | 1/A/1249:1256, 1/A/1998:2004 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5TBW_116 NA | |
| IL_6SPB_045 | 1/A/1297:1300, 1/A/1593:1594 | Major groove platform; stack outside cWW | homologous IL_4WF9_049 IL_74641.2 | |
| IL_6SPB_046 | 1/A/1306:1310, 1/A/1318:1320 | C-loop | homologous IL_7RQB_051 NA | |
| IL_6SPB_047 | 1/A/1338:1342, 1/A/1363:1367 | UAA/GAN | homologous IL_5J7L_292 NA | |
| IL_6SPB_048 | 1/A/1344:1348, 1/A/1357:1361 | tSH-tHW-tHS | homologous IL_5J7L_293 NA | |
| IL_6SPB_116 | 1/A/1401:1404, 1/A/1571:1578 | No text annotation | ||
| IL_6SPB_050 | 1/A/1404:1408, 1/A/1567:1571 | UAA/GAN | homologous IL_5J7L_295 NA | |
| IL_6SPB_051 | 1/A/1419:1422, 1/A/1547:1551 | Tandem non-canonical cWW pairs | homologous IL_5J7L_296 NA | |
| IL_6SPB_052 | 1/A/1424:1427, 1/A/1541:1545 | tSH-tHW | homologous IL_5J7L_297 NA | |
| IL_6SPB_053 | 1/A/1455:1458, 1/A/1507:1511 | No text annotation | homologous IL_5J7L_299 NA | |
| IL_6SPB_054 | 1/A/1460:1465, 1/A/1500:1505 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_7A0S_027 NA | |
| IL_6SPB_055 | 1/A/1467:1469, 1/A/1494:1498 | No text annotation | ||
| IL_6SPB_056 | 1/A/1476:1478, 1/A/1486:1487 | Single bulged A | homologous IL_5J7L_302 NA | |
| IL_6SPB_057 | 1/A/1513:1516, 1/A/1532:1536 | UAA/GAN variation | homologous IL_5J7L_303 NA | |
| IL_6SPB_058 | 1/A/1641:1646, 1/A/1991:1993 | No text annotation | homologous IL_5J7L_304 NA | |
| IL_6SPB_059 | 1/A/1653:1655, 1/A/1982:1984 | Isolated tWW turn | homologous IL_5J7L_305 NA | |
| IL_6SPB_060 | 1/A/1656:1659, 1/A/1980:1981 | Major groove platform; stack outside cWW | homologous IL_5J7L_306 NA | |
| IL_6SPB_112 | 1/A/1656:1664, 1/A/1977:1981 | No text annotation | homologous IL_5J7L_386 NA | |
| IL_6SPB_061 | 1/A/1659:1664, 1/A/1977:1980 | Intercalated tWH | geometric IL_4WF9_065 IL_28217.1 | |
| IL_6SPB_062 | 1/A/1676:1681, 1/A/1686:1692 | tSH-tSH-tHH-tHS | homologous IL_5J7L_308 NA | |
| IL_6SPB_063 | 1/A/1708:1712, 1/A/1722:1727 | No text annotation | ||
| IL_6SPB_117 | 1/A/1714:1715, 1/A/1718:1720 | No text annotation | ||
| IL_6SPB_064 | 1/A/1757:1758, 1/A/1967:1969 | Single bulged A | homologous IL_5J7L_312 NA | |
| IL_6SPB_065 | 1/A/1785:1791, 1/A/1800:1808 | Kink-turn related | homologous IL_5J7L_313 NA | |
| IL_6SPB_066 | 1/A/1824:1827, 1/A/1889:1890 | Minor groove platform, major groove intercalation | homologous IL_5J7L_314 NA | |
| IL_6SPB_067 | 1/A/1828:1829, 1/A/1885:1888 | Major groove intercalation | homologous IL_5J7L_315 NA | |
| IL_6SPB_068 | 1/A/1833:1836, 1/A/1880:1881 | No text annotation | ||
| IL_6SPB_113 | 1/A/1838:1847, 1/A/1869:1878 | No text annotation | homologous IL_5J7L_387 NA | |
| IL_6SPB_069 | 1/A/1851:1854, 1/A/1861:1865 | UAA/GAN related | homologous IL_5J7L_317 NA | |
| IL_6SPB_070 | 1/A/1920:1921, 1/A/1951:1954 | Bulged stacked bases | geometric IL_5J7L_318 NA | |
| IL_6SPB_071 | 1/A/1921:1932, 1/A/1948:1951 | No text annotation | homologous IL_7A0S_072 IL_04332.3 | |
| IL_6SPB_072 | 1/A/2037:2039, 1/A/2604:2605 | Major groove platform | homologous IL_7RQB_078 NA | |
| IL_6SPB_073 | 1/A/2041:2043, 1/A/2599:2602 | No text annotation | homologous IL_5J7L_321 NA | |
| IL_6SPB_074 | 1/A/2054:2056, 1/A/2429:2430 | Single bulged U | homologous IL_7RQB_080 NA | |
| IL_6SPB_075 | 1/A/2057:2058, 1/A/2425:2428 | Minor groove platform | homologous IL_7RQB_081 NA | |
| IL_6SPB_076 | 1/A/2068:2070, 1/A/2223:2226 | Isolated tHS basepair with bulges | homologous IL_5J7L_325 NA | |
| IL_6SPB_077 | 1/A/2072:2074, 1/A/2219:2221 | Isolated non-canonical cWW pair | homologous IL_5J7L_326 NA | |
| IL_6SPB_082 | 1/A/2189:2191, 1/A/2207:2208 | Single bulged U | homologous IL_5J7L_331 NA | |
| IL_6SPB_083 | 1/A/2284:2286, 1/A/2304:2308 | No text annotation | ||
| IL_6SPB_084 | 1/A/2337:2340, 1/A/2351:2354 | Double sheared | homologous IL_4WF9_087 IL_58355.2 | |
| IL_6SPB_085 | 1/A/2388:2390, 1/A/2401:2402 | Single bulged U | homologous IL_5J7L_334 NA | |
| IL_6SPB_086 | 1/A/2440:2441, 1/A/2485:2487 | Single stack bend | homologous IL_4WF9_089 IL_15011.2 | |
| IL_6SPB_087 | 1/A/2441:2442, 1/A/2483:2485 | Major groove platform | geometric IL_4V9F_082 IL_48076.8 | |
| IL_6SPB_088 | 1/A/2444:2446, 1/A/2480:2481 | Major groove platform | homologous IL_4WF9_091 IL_48076.8 | |
| IL_6SPB_089 | 1/A/2446:2448, 1/A/2476:2480 | Major groove minor groove platform with extra cWW | geometric IL_5J7L_337 NA | |
| IL_6SPB_090 | 1/A/2453:2457, 1/A/2467:2471 | Double sheared with non-canonical cWW | homologous IL_5J7L_338 NA | |
| IL_6SPB_091 | 1/A/2494:2495, 1/A/2567:2569 | Major groove platform | homologous IL_7RQB_096 NA | |
| IL_6SPB_092 | 1/A/2497:2499, 1/A/2561:2565 | Isolated non-canonical cWW with bulges | geometric IL_5J7L_340 NA | |
| IL_6SPB_093 | 1/A/2499:2500, 1/A/2558:2561 | No text annotation | homologous IL_5J7L_341 NA | |
| IL_6SPB_094 | 1/A/2509:2510, 1/A/2527:2530 | Major groove platform with intercalation | homologous IL_5J7L_342 NA | |
| IL_6SPB_095 | 1/A/2578:2579, 1/A/2588:2590 | No text annotation | geometric IL_9AXU_106 IL_14190.2 | |
| IL_6SPB_096 | 1/A/2623:2627, 1/A/2761:2769 | tSH-tHS-tHW | homologous IL_7RQB_102 NA | |
| IL_6SPB_097 | 1/A/2636:2645, 1/A/2650:2658 | No text annotation | ||
| IL_6SPB_098 | 1/A/2667:2671, 1/A/2712:2714 | C-loop | homologous IL_7RQB_104 NA | |
| IL_6SPB_099 | 1/A/2674:2678, 1/A/2705:2709 | UAA/GAN related, with intercalation | homologous IL_5J7L_348 NA | |
| IL_6SPB_100 | 1/A/2682:2683, 1/A/2698:2701 | Multiple bulged bases | homologous IL_5J7L_349 NA | |
| IL_6SPB_101 | 1/A/2724:2729, 1/A/2749:2754 | UAA/GAN with extra cWW | homologous IL_5J7L_350 NA | |
| IL_6SPB_102 | 1/A/2793:2798, 1/A/2876:2879 | No text annotation | geometric IL_5J7L_351 NA | |
| IL_6SPB_103 | 1/A/2825:2826, 1/A/2865:2867 | Major groove intercalation | homologous IL_5J7L_352 NA | |
| IL_6SPB_104 | 1/A/2830:2833, 1/A/2857:2861 | Multiple bulged bases with non-canonical cWW | homologous IL_5J7L_353 NA | |
| IL_6SPB_105 | 1/A/2834:2839, 1/A/2852:2856 | tHS double platform | homologous IL_5J7L_354 NA | |
| IL_6SPB_118 | 1/B/17:18, 1/B/65:67 | Major groove intercalation | homologous IL_4WF9_112 IL_14190.2 | |
| IL_6SPB_107 | 1/B/23:28, 1/B/56:60 | No text annotation | homologous IL_5J7L_356 NA | |
| IL_6SPB_108 | 1/B/30:31, 1/B/51:54 | Major groove minor groove platform; mini C-loop | homologous IL_4V9F_103 IL_73108.2 | |
| IL_6SPB_109 | 1/B/34:38, 1/B/44:48 | Symmetric double minor groove platform | homologous IL_4WF9_115 IL_58103.12 | |
| IL_6SPB_110 | 1/B/71:79, 1/B/97:105 | Bacterial 5S Loop E | homologous IL_7RQB_115 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6SPB_111 | No text annotation | ||
| IL_6SPB_030 | No text annotation | ||
| IL_6SPB_040 | No text annotation | ||
| IL_6SPB_049 | No text annotation | ||
| IL_6SPB_078 | Single stack bend | ||
| IL_6SPB_079 | No text annotation | ||
| IL_6SPB_114 | No text annotation | ||
| IL_6SPB_080 | No text annotation | ||
| IL_6SPB_115 | No text annotation | ||
| IL_6SPB_081 | No text annotation | ||
| IL_6SPB_106 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6SPB_001 | 1/A/30:31, 1/A/465:472, 1/A/500:501 | No text annotation | homologous J3_5J7L_036 NA | |
| J3_6SPB_014 | 1/A/30:31, 1/A/465:475, 1/A/487:501 | No text annotation | homologous J3_9DFE_002 J3_17917.1 | |
| J3_6SPB_015 | 1/A/32:35, 1/A/436:452, 1/A/459:464 | No text annotation | homologous J3_9DFE_003 J3_07616.1 | |
| J3_6SPB_002 | 1/A/56:57, 1/A/70:76, 1/A/110:114 | No text annotation | homologous J3_5J7L_037 NA | |
| J3_6SPB_016 | 1/A/291:295, 1/A/310:319, 1/A/331:335 | No text annotation | homologous J3_4WF9_015 J3_77124.1 | |
| J3_6SPB_003 | 1/A/673:679, 1/A/763:765, 1/A/781:784 | No text annotation | homologous J3_7RQB_004 NA | |
| J3_6SPB_004 | 1/A/688:690, 1/A/722:726, 1/A/750:753 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_6SPB_005 | 1/A/1285:1290, 1/A/1615:1617, 1/A/1629:1632 | No text annotation | homologous J3_5J7L_041 NA | |
| J3_6SPB_006 | 1/A/1293:1296, 1/A/1595:1601, 1/A/1610:1612 | No text annotation | homologous J3_5J7L_042 NA | |
| J3_6SPB_007 | 1/A/1331:1337, 1/A/1368:1372, 1/A/1389:1390 | No text annotation | homologous J3_7RQB_009 NA | |
| J3_6SPB_017 | 1/A/1411:1416, 1/A/1554:1555, 1/A/1558:1564 | No text annotation | homologous J3_5J7L_069 NA | |
| J3_6SPB_008 | 1/A/2078:2080, 1/A/2183:2187, 1/A/2210:2215 | Kink-turn 3-way junction | homologous J3_5J7L_044 NA | |
| J3_6SPB_018 | 1/A/2269:2271, 1/A/2371:2382, 1/A/2408:2414 | No text annotation | homologous J3_5J7L_070 NA | |
| J3_6SPB_009 | 1/A/2282:2284, 1/A/2308:2310, 1/A/2319:2324 | No text annotation | homologous J3_5J7L_045 NA | |
| J3_6SPB_019 | 1/A/2282:2286, 1/A/2304:2310, 1/A/2319:2324 | No text annotation | homologous J3_5J7L_071 NA | |
| J3_6SPB_010 | 1/A/2504:2507, 1/A/2532:2534, 1/A/2548:2554 | No text annotation | homologous J3_5J7L_046 NA | |
| J3_6SPB_011 | 1/A/2776:2778, 1/A/2792:2793, 1/A/2879:2881 | No text annotation | homologous J3_5J7L_047 NA | |
| J3_6SPB_012 | 1/A/2801:2802, 1/A/2818:2823, 1/A/2869:2873 | No text annotation | ||
| J3_6SPB_020 | 1/B/10:16, 1/B/68:69, 1/B/107:110 | No text annotation | homologous J3_7A0S_021 J3_47324.1 | |
| J4_6SPB_001 | 1/A/268:274, 1/A/354:366, 1/A/390:398, 1/A/411:415 | No text annotation | ||
| J4_6SPB_002 | 1/A/291:295, 1/A/310:313, 1/A/317:319, 1/A/331:335 | No text annotation | homologous J4_7A0S_002 J4_16174.1 | |
| J4_6SPB_003 | 1/A/591:594, 1/A/614:618, 1/A/625:628, 1/A/640:646 | No text annotation | homologous J4_5J7L_020 NA | |
| J4_6SPB_004 | 1/A/1257:1263, 1/A/1281:1282, 1/A/1635:1638, 1/A/1996:1997 | No text annotation | homologous J4_5J7L_021 NA | |
| J4_6SPB_005 | 1/A/1297:1301, 1/A/1325:1330, 1/A/1391:1392, 1/A/1587:1594 | No text annotation | homologous J4_5J7L_022 NA | |
| J4_6SPB_006 | 1/A/1300:1301, 1/A/1325:1330, 1/A/1391:1392, 1/A/1587:1593 | No text annotation | homologous J4_5J7L_023 NA | |
| J4_6SPB_007 | 1/A/1431:1432, 1/A/1453:1454, 1/A/1512:1513, 1/A/1536:1537 | No text annotation | homologous J4_5J7L_024 NA | |
| J4_6SPB_008 | 1/A/1759:1763, 1/A/1775:1779, 1/A/1814:1817, 1/A/1962:1966 | No text annotation | homologous J4_5J7L_025 NA | |
| J4_6SPB_009 | 1/A/1820:1822, 1/A/1892:1893, 1/A/1911:1920, 1/A/1954:1959 | No text annotation | homologous J4_9DFE_008 J4_42306.1 | |
| J4_6SPB_010 | 1/A/2272:2276, 1/A/2330:2334, 1/A/2357:2359, 1/A/2368:2370 | No text annotation | homologous J4_5J7L_027 NA | |
| J4_6SPB_011 | 1/A/2630:2633, 1/A/2661:2663, 1/A/2718:2722, 1/A/2756:2758 | No text annotation | homologous J4_5J7L_028 NA | |
| J5_6SPB_001 | 1/A/47:54, 1/A/116:121, 1/A/130:131, 1/A/148:150, 1/A/176:178 | No text annotation | homologous J5_5J7L_013 NA | |
| J5_6SPB_002 | 1/A/522:524, 1/A/550:554, 1/A/567:569, 1/A/1248:1249, 1/A/2004:2005 | No text annotation | homologous J5_5J7L_014 NA | |
| J5_6SPB_003 | 1/A/574:579, 1/A/658:661, 1/A/799:802, 1/A/1182:1183, 1/A/1237:1243 | No text annotation | homologous J5_5J7L_015 NA | |
| J5_6SPB_004 | 1/A/1664:1672, 1/A/1696:1697, 1/A/1738:1739, 1/A/1743:1751, 1/A/1975:1977 | No text annotation | homologous J5_5J7L_016 NA | |
| J5_6SPB_005 | 1/A/2044:2051, 1/A/2433:2440, 1/A/2487:2493, 1/A/2570:2575, 1/A/2593:2598 | No text annotation | ||
| J5_6SPB_006 | 1/A/2061:2064, 1/A/2230:2233, 1/A/2245:2246, 1/A/2268:2269, 1/A/2414:2422 | No text annotation | homologous J5_4WF9_007 J5_39529.2 | |
| J6_6SPB_001 | 1/A/45:46, 1/A/179:183, 1/A/214:224, 1/A/231:235, 1/A/262:266, 1/A/417:424 | No text annotation | ||
| J6_6SPB_002 | 1/A/2061:2064, 1/A/2230:2233, 1/A/2245:2246, 1/A/2268:2271, 1/A/2371:2382, 1/A/2408:2422 | No text annotation | ||
| J7_6SPB_001 | 1/A/8:15, 1/A/516:522, 1/A/2005:2010, 1/A/2027:2030, 1/A/2612:2617, 1/A/2775:2776, 1/A/2881:2882 | No text annotation | ||
| J7_6SPB_002 | 1/A/807:812, 1/A/825:828, 1/A/930:936, 1/A/961:966, 1/A/977:981, 1/A/1154:1155, 1/A/1172:1177 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6SPB_013 | No text annotation |
Coloring options: