Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6W2S_0011/0/392:399No text annotation
Not in a motif group
geometric
HL_5TBW_021
HL_33817.1
HL_6W2S_0021/0/408:435No text annotation
Not in a motif group
HL_6W2S_0031/0/484:492No text annotation
Not in a motif group
HL_6W2S_0041/0/531:546No text annotation
Not in a motif group
HL_6W2S_0051/0/557:563No text annotation
Not in a motif group
geometric
HL_4WF9_011
HL_75407.1
HL_6W2S_0061/0/625:640No text annotation
Not in a motif group
HL_6W2S_0071/0/647:656No text annotation
Not in a motif group
HL_6W2S_0081/A/7:17No text annotation
Not in a motif group
homologous
HL_4V88_186
HL_89881.2
HL_6W2S_0091/A/69:80No text annotation
Not in a motif group
geometric
HL_2ZZM_002
HL_23083.1
HL_6W2S_0101/A/156:162Other HL
Not in a motif group
homologous
HL_4V88_188
HL_76539.2
HL_6W2S_0111/A/196:203No text annotation
Not in a motif group
geometric
HL_2Y9H_005
HL_47100.1
HL_6W2S_0121/A/288:295T-loop with 1 bulged base
Not in a motif group
homologous
HL_4V88_191
HL_27930.1
HL_6W2S_0131/A/319:332No text annotation
Not in a motif group
HL_6W2S_0141/A/377:387No text annotation
Not in a motif group
HL_6W2S_0151/A/416:421No text annotation
Not in a motif group
homologous
HL_4V88_194
HL_50142.2
HL_6W2S_0161/A/441:452No text annotation
Not in a motif group
homologous
HL_4V88_195
HL_84288.1
HL_6W2S_0171/A/462:467UNCG
Not in a motif group
homologous
HL_4V88_196
HL_03562.2
HL_6W2S_0181/A/498:504No text annotation
Not in a motif group
homologous
HL_4V88_197
HL_09136.1
HL_6W2S_0191/A/539:544No text annotation
Not in a motif group
homologous
HL_4V88_198
HL_56691.2
HL_6W2S_0201/A/569:581No text annotation
Not in a motif group
geometric
HL_4V88_199
HL_06285.2
HL_6W2S_0211/A/618:623Other HL
Not in a motif group
homologous
HL_4V88_200
HL_53845.1
HL_6W2S_0221/A/820:828No text annotation
Not in a motif group
homologous
HL_4V88_203
HL_46766.2
HL_6W2S_0231/A/833:841No text annotation
Not in a motif group
HL_6W2S_0241/A/885:901No text annotation
Not in a motif group
HL_6W2S_0251/A/957:966No text annotation
Not in a motif group
homologous
HL_4V88_206
HL_12326.1
HL_6W2S_0261/A/994:999Other HL
Not in a motif group
homologous
HL_4V88_207
HL_87030.2
HL_6W2S_0271/A/1054:1064No text annotation
Not in a motif group
homologous
HL_4V88_208
HL_12326.1
HL_6W2S_0281/A/1112:1121No text annotation
Not in a motif group
HL_6W2S_0291/A/1141:1146Other HL
Not in a motif group
homologous
HL_4V88_210
HL_42097.1
HL_6W2S_0301/A/1178:1183GNRA
Not in a motif group
homologous
HL_4V88_211
HL_42097.1
HL_6W2S_0311/A/1245:1254No text annotation
Not in a motif group
homologous
HL_4V88_212
HL_73530.2
HL_6W2S_0321/A/1294:1305No text annotation
Not in a motif group
HL_6W2S_0331/A/1353:1358GNRA
Not in a motif group
homologous
HL_4V88_214
HL_42097.1
HL_6W2S_0341/A/1366:1373No text annotation
Not in a motif group
homologous
HL_4V88_215
HL_71554.2
HL_6W2S_0351/A/1416:1424No text annotation
Not in a motif group
HL_6W2S_0361/A/1460:1466No text annotation
Not in a motif group
homologous
HL_4V88_217
HL_42097.1
HL_6W2S_0371/A/1565:1570GNRA
Not in a motif group
homologous
HL_4V88_218
HL_42097.1
HL_6W2S_0381/A/1614:1625No text annotation
Not in a motif group
homologous
HL_4V88_219
HL_22554.1
HL_6W2S_0391/A/1658:1666No text annotation
Not in a motif group
homologous
HL_4V88_220
HL_60812.1
HL_6W2S_0401/A/1759:1773No text annotation
Not in a motif group
HL_6W2S_0411/A/1847:1852Other HL
Not in a motif group
homologous
HL_4V88_222
HL_16173.1

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6W2S_0011/0/362:367,
1/0/457:461
No text annotation
Not in a motif group
IL_6W2S_0021/0/371:373,
1/0/450:453
Isolated non-canonical cWW with bulges
Not in a motif group
geometric
IL_5J7L_340
IL_90933.2
IL_6W2S_0031/0/374:378,
1/0/445:449
Triple sheared
Not in a motif group
geometric
IL_4WFL_001
IL_56467.8
IL_6W2S_0041/0/378:382,
1/0/439:445
No text annotation
Not in a motif group
IL_6W2S_0051/0/390:392,
1/0/399:401
No text annotation
Not in a motif group
geometric
IL_5TBW_110
IL_51629.2
IL_6W2S_0061/0/521:523,
1/0/570:572
No text annotation
Not in a motif group
geometric
IL_7A0S_026
IL_51629.2
IL_6W2S_0071/0/594:600,
1/0/682:689
8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge
Not in a motif group
geometric
IL_4V9F_012
IL_59724.1
IL_6W2S_0081/0/600:605,
1/0/676:682
tSH-tSH-tHH-tHS
Not in a motif group
geometric
IL_4V9F_063
IL_65969.2
IL_6W2S_0091/0/614:616,
1/0/666:667
Single stack bend
Not in a motif group
geometric
IL_5TBW_035
IL_76488.2
IL_6W2S_0101/A/23:25,
1/A/649:651
No text annotation
Not in a motif group
geometric
IL_4M4O_001
IL_95997.1
IL_6W2S_0111/A/34:36,
1/A/519:521
UC cWW
Not in a motif group
homologous
IL_4V88_385
IL_51629.2
IL_6W2S_0121/A/37:40,
1/A/514:518
Double sheared
Not in a motif group
geometric
IL_4WF9_016
IL_09705.9
IL_6W2S_0131/A/41:47,
1/A/479:481
No text annotation
Not in a motif group
geometric
IL_4V88_387
IL_33912.1
IL_6W2S_0141/A/49:51,
1/A/476:477
Minor groove platform
Not in a motif group
homologous
IL_4V88_388
IL_93353.1
IL_6W2S_0151/A/57:62,
1/A/86:88
No text annotation
Not in a motif group
homologous
IL_4V88_389
IL_95004.1
IL_6W2S_0161/A/63:68,
1/A/81:85
No text annotation
Not in a motif group
homologous
IL_4V88_390
IL_77691.1
IL_6W2S_0171/A/108:110,
1/A/351:353
No text annotation
Not in a motif group
geometric
IL_1T0E_002
IL_95997.1
IL_6W2S_0181/A/110:112,
1/A/349:351
No text annotation
Not in a motif group
geometric
IL_4WF9_042
IL_95997.1
IL_6W2S_0191/A/112:115,
1/A/348:349
Multiple bulged bases
Not in a motif group
geometric
IL_4V88_392
IL_44546.1
IL_6W2S_0201/A/116:121,
1/A/343:347
No text annotation
Not in a motif group
homologous
IL_4V88_393
IL_64181.2
IL_6W2S_0211/A/123:124,
1/A/339:341
Minor groove platform
Not in a motif group
geometric
IL_4UYK_001
IL_93353.1
IL_6W2S_0221/A/130:144,
1/A/175:182
No text annotation
Not in a motif group
IL_6W2S_0231/A/145:151,
1/A/167:174
tWH-tWH-tHW-tHW
Not in a motif group
homologous
IL_4V88_394
IL_80604.2
IL_6W2S_0241/A/152:154,
1/A/164:166
No text annotation
Not in a motif group
homologous
IL_4V88_395
IL_53251.2
IL_6W2S_0251/A/188:192,
1/A/207:211
Triple sheared
Not in a motif group
geometric
IL_4WFL_001
IL_56467.8
IL_6W2S_0261/A/193:195,
1/A/205:206
Single stack bend
Not in a motif group
geometric
IL_4LFB_041
IL_76488.2
IL_6W2S_0271/A/195:196,
1/A/203:205
Single stack bend
Not in a motif group
geometric
IL_7A0S_054
IL_76488.2
IL_6W2S_0281/A/216:219,
1/A/302:309
No text annotation
Not in a motif group
IL_6W2S_0291/A/223:288,
1/A/295:298
No text annotation
Not in a motif group
IL_6W2S_0301/A/312:314,
1/A/336:337
Single bulged A
Not in a motif group
homologous
IL_4V88_399
IL_37497.2
IL_6W2S_0311/A/316:319,
1/A/332:334
No text annotation
Not in a motif group
IL_6W2S_0321/A/359:364,
1/A/396:403
Kink-turn with non-sequential stacking
Not in a motif group
homologous
IL_4V88_402
IL_45067.2
IL_6W2S_0331/A/366:371,
1/A/393:394
No text annotation
Not in a motif group
geometric
IL_5Y58_001
IL_48100.2
IL_6W2S_0341/A/411:413,
1/A/424:429
No text annotation
Not in a motif group
homologous
IL_4V88_404
IL_11347.1
IL_6W2S_0351/A/437:439,
1/A/454:456
Isolated cWH basepair
Not in a motif group
homologous
IL_4V88_405
IL_51629.2
IL_6W2S_0361/A/459:461,
1/A/468:470
Isolated near basepair
Not in a motif group
homologous
IL_4V88_406
IL_52767.2
IL_6W2S_0371/A/487:489,
1/A/511:512
Single bulged U
Not in a motif group
geometric
IL_4V88_407
IL_83039.13
IL_6W2S_0381/A/491:495,
1/A/508:509
C-loop
Not in a motif group
geometric
IL_5J7L_018
IL_75255.1
IL_6W2S_0391/A/495:496,
1/A/506:508
Single bulged G
Not in a motif group
geometric
IL_5J7L_019
IL_00225.2
IL_6W2S_0401/A/529:530,
1/A/554:556
Single bulged A
Not in a motif group
homologous
IL_4V88_409
IL_37497.2
IL_6W2S_0411/A/535:537,
1/A/546:549
No text annotation
Not in a motif group
IL_6W2S_0421/A/563:565,
1/A/585:592
No text annotation
Not in a motif group
homologous
IL_8C3A_420
IL_55023.1
IL_6W2S_0431/A/566:569,
1/A/581:584
tSH-tHW
Not in a motif group
geometric
IL_5UNE_005
IL_21270.1
IL_6W2S_0441/A/599:608,
1/A/635:637
No text annotation
Not in a motif group
IL_6W2S_0451/A/611:617,
1/A/624:632
No text annotation
Not in a motif group
homologous
IL_4V88_415
IL_55871.1
IL_6W2S_0461/A/663:665,
1/A/1162:1164
No text annotation
Not in a motif group
geometric
IL_1Y27_001
IL_51629.2
IL_6W2S_0471/A/665:671,
1/A/1161:1162
No text annotation
Not in a motif group
homologous
IL_4V88_416
IL_69996.1
IL_6W2S_0481/A/673:675,
1/A/1030:1032
No text annotation
Not in a motif group
homologous
IL_4V88_417
IL_95997.1
IL_6W2S_0491/A/676:680,
1/A/1025:1029
tSH-tHW-tHS
Not in a motif group
homologous
IL_4V88_418
IL_17136.1
IL_6W2S_0501/A/692:695,
1/A/731:734
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_402D_001
IL_30621.2
IL_6W2S_0511/A/745:749,
1/A/794:796
No text annotation
Not in a motif group
IL_6W2S_0521/A/752:754,
1/A/790:791
No text annotation
Not in a motif group
IL_6W2S_0531/A/802:803,
1/A/860:863
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_4V88_423
IL_09061.6
IL_6W2S_0541/A/805:807,
1/A/856:858
No text annotation
Not in a motif group
homologous
IL_4V88_424
IL_95997.1
IL_6W2S_0551/A/807:816,
1/A/848:856
No text annotation
Not in a motif group
IL_6W2S_0561/A/874:876,
1/A/910:912
No text annotation
Not in a motif group
geometric
IL_5Y85_006
IL_95997.1
IL_6W2S_0571/A/877:879,
1/A/907:909
No text annotation
Not in a motif group
geometric
IL_5TBW_042
IL_95997.1
IL_6W2S_0581/A/922:923,
1/A/1019:1022
Major groove platform; stack outside cWW
Not in a motif group
geometric
IL_6N5P_003
IL_50694.2
IL_6W2S_0591/A/924:927,
1/A/1014:1018
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_4V88_429
IL_30621.2
IL_6W2S_0601/A/928:931,
1/A/1010:1013
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_4V88_430
IL_30621.2
IL_6W2S_0611/A/931:935,
1/A/1007:1010
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_4V88_431
IL_30621.2
IL_6W2S_0621/A/942:945,
1/A/981:984
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_4V88_432
IL_30621.2
IL_6W2S_0631/A/952:956,
1/A/967:974
Kink-turn
Not in a motif group
homologous
IL_4V88_434
IL_45067.2
IL_6W2S_0641/A/1042:1047,
1/A/1071:1073
Other IL
Not in a motif group
geometric
IL_4V88_435
IL_22046.1
IL_6W2S_0651/A/1047:1051,
1/A/1067:1071
tSH-tHW-tHS
Not in a motif group
homologous
IL_4V88_436
IL_17136.1
IL_6W2S_0661/A/1091:1093,
1/A/1152:1158
No text annotation
Not in a motif group
homologous
IL_4V88_437
IL_19557.3
IL_6W2S_0671/A/1098:1101,
1/A/1131:1134
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_4V88_438
IL_30621.2
IL_6W2S_0681/A/1101:1103,
1/A/1129:1131
No text annotation
Not in a motif group
geometric
IL_4V88_465
IL_95997.1
IL_6W2S_0691/A/1108:1110,
1/A/1123:1124
Minor groove platform
Not in a motif group
geometric
IL_4V88_412
IL_93353.1
IL_6W2S_0701/A/1168:1175,
1/A/1186:1191
8x6 Sarcin-Ricin with inserted Y; G-bulge
Not in a motif group
homologous
IL_4V88_440
IL_24606.2
IL_6W2S_0711/A/1203:1204,
1/A/1694:1696
Single bulged A
Not in a motif group
homologous
IL_4V88_441
IL_37497.2
IL_6W2S_0721/A/1206:1208,
1/A/1691:1692
Single bulged G
Not in a motif group
homologous
IL_4V88_442
IL_00225.2
IL_6W2S_0731/A/1214:1217,
1/A/1681:1685
C-loop
Not in a motif group
homologous
IL_4V88_443
IL_63596.6
IL_6W2S_0741/A/1230:1232,
1/A/1526:1528
No text annotation
Not in a motif group
homologous
IL_4V88_444
IL_95997.1
IL_6W2S_0751/A/1235:1236,
1/A/1521:1523
Minor groove platform
Not in a motif group
homologous
IL_4V88_445
IL_42622.2
IL_6W2S_0761/A/1270:1272,
1/A/1510:1512
No text annotation
Not in a motif group
homologous
IL_4V88_446
IL_95997.1
IL_6W2S_0771/A/1281:1290,
1/A/1309:1316
No text annotation
Not in a motif group
IL_6W2S_0781/A/1291:1294,
1/A/1305:1308
No text annotation
Not in a motif group
IL_6W2S_0791/A/1325:1327,
1/A/1502:1503
Single bulged U
Not in a motif group
homologous
IL_4V88_449
IL_83039.13
IL_6W2S_0801/A/1329:1333,
1/A/1498:1500
Isolated cWS basepair
Not in a motif group
geometric
IL_4V88_450
IL_76319.2
IL_6W2S_0811/A/1333:1335,
1/A/1492:1498
Minor groove platform with extra cWW
Not in a motif group
homologous
IL_4V88_451
IL_92788.2
IL_6W2S_0821/A/1337:1338,
1/A/1488:1490
Single bulged A
Not in a motif group
homologous
IL_4V88_452
IL_37497.2
IL_6W2S_0831/A/1347:1349,
1/A/1380:1382
Isolated cWH basepair
Not in a motif group
homologous
IL_4V88_453
IL_51629.2
IL_6W2S_0841/A/1363:1365,
1/A/1374:1375
No text annotation
Not in a motif group
IL_6W2S_0851/A/1395:1399,
1/A/1447:1450
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_5EW4_002
IL_30621.2
IL_6W2S_0861/A/1402:1405,
1/A/1441:1444
Minor groove platform
Not in a motif group
homologous
IL_4V88_456
IL_76458.1
IL_6W2S_0871/A/1412:1414,
1/A/1426:1429
Single bulged G, near cWW
Not in a motif group
geometric
IL_6CZR_128
IL_52767.2
IL_6W2S_0881/A/1537:1539,
1/A/1594:1596
No text annotation
Not in a motif group
geometric
IL_3GM7_006
IL_95997.1
IL_6W2S_0891/A/1550:1558,
1/A/1577:1582
No text annotation
Not in a motif group
geometric
IL_5J7L_055
IL_75461.4
IL_6W2S_0901/A/1560:1562,
1/A/1573:1575
No text annotation
Not in a motif group
geometric
IL_5AOX_001
IL_95997.1
IL_6W2S_0911/A/1604:1610,
1/A/1629:1635
No text annotation
Not in a motif group
homologous
IL_8C3A_469
IL_10092.1
IL_6W2S_0921/A/1700:1702,
1/A/1833:1836
No text annotation
Not in a motif group
homologous
IL_4V88_463
IL_36143.3
IL_6W2S_0931/A/1702:1705,
1/A/1829:1833
No text annotation
Not in a motif group
geometric
IL_4V88_464
IL_99670.1
IL_6W2S_0941/A/1706:1708,
1/A/1826:1828
No text annotation
Not in a motif group
homologous
IL_4V88_465
IL_95997.1
IL_6W2S_0951/A/1708:1711,
1/A/1822:1826
No text annotation
Not in a motif group
geometric
IL_6AZ4_001
IL_69145.1
IL_6W2S_0961/A/1714:1716,
1/A/1817:1819
AA cWW
Not in a motif group
homologous
IL_4V88_467
IL_95997.1
IL_6W2S_0971/A/1717:1720,
1/A/1813:1816
Double sheared
Not in a motif group
homologous
IL_4V88_468
IL_09705.9
IL_6W2S_0981/A/1720:1723,
1/A/1811:1813
Isolated cWS basepair
Not in a motif group
geometric
IL_4TS2_003
IL_52767.2
IL_6W2S_0991/A/1729:1731,
1/A/1803:1805
No text annotation
Not in a motif group
homologous
IL_4V88_470
IL_51629.2
IL_6W2S_1001/A/1733:1736,
1/A/1798:1801
Double sheared
Not in a motif group
homologous
IL_4V88_471
IL_09705.9
IL_6W2S_1011/A/1739:1741,
1/A/1793:1795
No text annotation
Not in a motif group
geometric
IL_1YZ9_002
IL_95997.1
IL_6W2S_1021/A/1742:1746,
1/A/1788:1792
Triple sheared
Not in a motif group
homologous
IL_4V88_474
IL_56467.8
IL_6W2S_1031/A/1750:1753,
1/A/1779:1784
No text annotation
Not in a motif group
IL_6W2S_1041/A/1754:1756,
1/A/1777:1778
Single stack bend
Not in a motif group
geometric
IL_4WF9_089
IL_76488.2
IL_6W2S_1051/A/1756:1757,
1/A/1775:1777
No text annotation
Not in a motif group

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6W2S_0011/0/384:390,
1/0/401:408,
1/0/435:437
No text annotation
Not in a motif group
J3_6W2S_0021/0/523:530,
1/0/547:554,
1/0/566:570
No text annotation
Not in a motif group
J3_6W2S_0031/0/619:623,
1/0/642:647,
1/0/656:663
No text annotation
Not in a motif group
J3_6W2S_0041/A/40:41,
1/A/481:487,
1/A/512:514
No text annotation
Not in a motif group
J3_6W2S_0051/A/682:685,
1/A/917:922,
1/A/1022:1023
No text annotation
Not in a motif group
J3_6W2S_0061/A/816:819,
1/A/829:831,
1/A/843:848
No text annotation
Not in a motif group
homologous
J3_4V88_032
NA
J3_6W2S_0071/A/938:941,
1/A/985:993,
1/A/1000:1004
No text annotation
Not in a motif group
homologous
J3_4V88_033
NA
J3_6W2S_0081/A/1094:1096,
1/A/1136:1140,
1/A/1147:1151
No text annotation
Not in a motif group
J3_6W2S_0091/A/1218:1221,
1/A/1645:1651,
1/A/1673:1680
No text annotation
Not in a motif group
homologous
J3_4V88_035
NA
J3_6W2S_0101/A/1224:1228,
1/A/1530:1532,
1/A/1638:1642
No text annotation
Not in a motif group
J3_6W2S_0111/A/1237:1244,
1/A/1255:1266,
1/A/1516:1520
No text annotation
Not in a motif group
J3_6W2S_0121/A/1272:1277,
1/A/1320:1324,
1/A/1504:1510
No text annotation
Not in a motif group
homologous
J3_4V88_038
NA
J3_6W2S_0131/A/1340:1345,
1/A/1384:1389,
1/A/1481:1486
No text annotation
Not in a motif group
J3_6W2S_0141/A/1350:1351,
1/A/1360:1363,
1/A/1375:1379
No text annotation
Not in a motif group
J3_6W2S_0151/A/1391:1395,
1/A/1450:1456,
1/A/1470:1479
No text annotation
Not in a motif group
J3_6W2S_0161/A/1532:1536,
1/A/1597:1604,
1/A/1635:1638
No text annotation
Not in a motif group

Problematic loops

No problematic loops


Coloring options:
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