6YAM Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
# | loop id | location | annotation | motif |
---|---|---|---|---|
1 | ➜ | 1/2/23:25,1/2/639:641 | NA | NA |
2 | ➜ | 1/2/37:40,1/2/504:508 | NA | NA |
3 | ➜ | 1/2/41:47,1/2/469:471 | NA | NA |
4 | ➜ | 1/2/49:51,1/2/466:467 | NA | NA |
5 | ➜ | 1/2/57:62,1/2/86:88 | NA | NA |
6 | ➜ | 1/2/63:68,1/2/81:85 | NA | NA |
7 | ➜ | 1/2/108:110,1/2/341:343 | NA | NA |
8 | ➜ | 1/2/110:112,1/2/339:341 | NA | NA |
9 | ➜ | 1/2/112:115,1/2/338:339 | NA | NA |
10 | ➜ | 1/2/116:121,1/2/333:337 | NA | NA |
11 | ➜ | 1/2/145:151,1/2/167:174 | NA | NA |
12 | ➜ | 1/2/152:154,1/2/164:166 | NA | NA |
13 | ➜ | 1/2/187:191,1/2/204:208 | NA | NA |
14 | ➜ | 1/2/192:194,1/2/201:203 | NA | NA |
15 | ➜ | 1/2/213:216,1/2/293:300 | NA | NA |
16 | ➜ | 1/2/303:305,1/2/326:327 | NA | NA |
17 | ➜ | 1/2/308:310,1/2/321:323 | NA | NA |
18 | ➜ | 1/2/349:354,1/2/386:393 | NA | NA |
19 | ➜ | 1/2/356:361,1/2/383:384 | NA | NA |
20 | ➜ | 1/2/401:403,1/2/414:419 | NA | NA |
21 | ➜ | 1/2/427:429,1/2/444:446 | NA | NA |
22 | ➜ | 1/2/449:451,1/2/458:460 | NA | NA |
23 | ➜ | 1/2/477:479,1/2/501:502 | NA | NA |
24 | ➜ | 1/2/481:486,1/2/496:499 | NA | NA |
25 | ➜ | 1/2/519:522,1/2/542:546 | NA | NA |
26 | ➜ | 1/2/522:524,1/2/539:542 | NA | NA |
27 | ➜ | 1/2/525:527,1/2/536:538 | NA | NA |
28 | ➜ | 1/2/553:555,1/2/575:582 | NA | NA |
29 | ➜ | 1/2/556:559,1/2/571:574 | NA | NA |
30 | ➜ | 1/2/589:596,1/2/626:627 | NA | NA |
31 | ➜ | 1/2/596:598,1/2/625:626 | NA | NA |
32 | ➜ | 1/2/601:607,1/2/614:622 | NA | NA |
33 | ➜ | 1/2/653:655,1/2/1158:1160 | NA | NA |
34 | ➜ | 1/2/655:661,1/2/1157:1158 | NA | NA |
35 | ➜ | 1/2/663:665,1/2/1026:1028 | NA | NA |
36 | ➜ | 1/2/666:670,1/2/1021:1025 | NA | NA |
37 | ➜ | 1/2/741:748,1/2/788:792 | NA | NA |
38 | ➜ | 1/2/748:751,1/2/785:788 | NA | NA |
39 | ➜ | 1/2/798:799,1/2/856:859 | NA | NA |
40 | ➜ | 1/2/801:803,1/2/852:854 | NA | NA |
41 | ➜ | 1/2/803:812,1/2/844:852 | NA | NA |
42 | ➜ | 1/2/869:870,1/2/907:910 | NA | NA |
43 | ➜ | 1/2/870:872,1/2/906:907 | NA | NA |
44 | ➜ | 1/2/872:875,1/2/903:906 | NA | NA |
45 | ➜ | 1/2/918:919,1/2/1015:1018 | NA | NA |
46 | ➜ | 1/2/920:923,1/2/1010:1014 | NA | NA |
47 | ➜ | 1/2/924:927,1/2/1006:1009 | NA | NA |
48 | ➜ | 1/2/927:931,1/2/1003:1006 | NA | NA |
49 | ➜ | 1/2/938:941,1/2/977:980 | NA | NA |
50 | ➜ | 1/2/948:952,1/2/963:970 | NA | NA |
51 | ➜ | 1/2/1038:1043,1/2/1067:1069 | NA | NA |
52 | ➜ | 1/2/1043:1047,1/2/1063:1067 | NA | NA |
53 | ➜ | 1/2/1087:1089,1/2/1148:1154 | NA | NA |
54 | ➜ | 1/2/1094:1097,1/2/1127:1130 | NA | NA |
55 | ➜ | 1/2/1097:1099,1/2/1125:1127 | NA | NA |
56 | ➜ | 1/2/1104:1106,1/2/1119:1120 | NA | NA |
57 | ➜ | 1/2/1164:1171,1/2/1182:1187 | NA | NA |
58 | ➜ | 1/2/1199:1200,1/2/1689:1691 | NA | NA |
59 | ➜ | 1/2/1202:1204,1/2/1686:1687 | NA | NA |
60 | ➜ | 1/2/1210:1213,1/2/1676:1680 | NA | NA |
61 | ➜ | 1/2/1226:1228,1/2/1521:1523 | NA | NA |
62 | ➜ | 1/2/1231:1232,1/2/1516:1518 | NA | NA |
63 | ➜ | 1/2/1266:1268,1/2/1506:1507 | NA | NA |
64 | ➜ | 1/2/1277:1283,1/2/1310:1312 | NA | NA |
65 | ➜ | 1/2/1283:1286,1/2/1305:1310 | NA | NA |
66 | ➜ | 1/2/1287:1289,1/2/1302:1304 | NA | NA |
67 | ➜ | 1/2/1321:1323,1/2/1498:1499 | NA | NA |
68 | ➜ | 1/2/1325:1329,1/2/1494:1496 | NA | NA |
69 | ➜ | 1/2/1329:1331,1/2/1488:1494 | NA | NA |
70 | ➜ | 1/2/1333:1334,1/2/1484:1486 | NA | NA |
71 | ➜ | 1/2/1343:1345,1/2/1376:1378 | NA | NA |
72 | ➜ | 1/2/1359:1361,1/2/1370:1371 | NA | NA |
73 | ➜ | 1/2/1391:1395,1/2/1443:1446 | NA | NA |
74 | ➜ | 1/2/1398:1401,1/2/1437:1440 | NA | NA |
75 | ➜ | 1/2/1404:1407,1/2/1430:1434 | NA | NA |
76 | ➜ | 1/2/1407:1409,1/2/1429:1430 | NA | NA |
77 | ➜ | 1/2/1411:1413,1/2/1425:1427 | NA | NA |
78 | ➜ | 1/2/1413:1415,1/2/1424:1425 | NA | NA |
79 | ➜ | 1/2/1449:1452,1/2/1466:1471 | NA | NA |
80 | ➜ | 1/2/1532:1534,1/2/1589:1591 | NA | NA |
81 | ➜ | 1/2/1545:1553,1/2/1572:1577 | NA | NA |
82 | ➜ | 1/2/1555:1557,1/2/1568:1570 | NA | NA |
83 | ➜ | 1/2/1599:1605,1/2/1624:1630 | NA | NA |
84 | ➜ | 1/2/1695:1697,1/2/1827:1830 | NA | NA |
85 | ➜ | 1/2/1697:1700,1/2/1823:1827 | NA | NA |
86 | ➜ | 1/2/1701:1703,1/2/1820:1822 | NA | NA |
87 | ➜ | 1/2/1703:1708,1/2/1814:1820 | NA | NA |
88 | ➜ | 1/2/1709:1711,1/2/1811:1813 | NA | NA |
89 | ➜ | 1/2/1712:1715,1/2/1807:1810 | NA | NA |
90 | ➜ | 1/2/1715:1717,1/2/1806:1807 | NA | NA |
91 | ➜ | 1/2/1724:1726,1/2/1797:1799 | NA | NA |
92 | ➜ | 1/2/1728:1731,1/2/1792:1795 | NA | NA |
93 | ➜ | 1/2/1734:1736,1/2/1787:1789 | NA | NA |
94 | ➜ | 1/2/1737:1741,1/2/1782:1786 | NA | NA |
95 | ➜ | 1/2/1745:1746,1/2/1776:1778 | NA | NA |
96 | ➜ | 1/2/1746:1747,1/2/1774:1776 | NA | NA |
97 | ➜ | 1/2/1747:1748,1/2/1772:1774 | NA | NA |
Problematic loops
No problematic loops
Valid loops
# | loop id | location | annotation | motif |
---|---|---|---|---|
1 | ➜ | 1/1/14:22 | NA | NA |
2 | ➜ | 1/1/31:39 | NA | NA |
3 | ➜ | 1/1/53:61 | NA | NA |
4 | ➜ | 1/2/7:17 | NA | NA |
5 | ➜ | 1/2/69:80 | NA | NA |
6 | ➜ | 1/2/156:162 | NA | NA |
7 | ➜ | 1/2/194:201 | NA | NA |
8 | ➜ | 1/2/279:286 | NA | NA |
9 | ➜ | 1/2/312:319 | NA | NA |
10 | ➜ | 1/2/367:377 | NA | NA |
11 | ➜ | 1/2/406:411 | NA | NA |
12 | ➜ | 1/2/431:442 | NA | NA |
13 | ➜ | 1/2/452:457 | NA | NA |
14 | ➜ | 1/2/488:494 | NA | NA |
15 | ➜ | 1/2/529:534 | NA | NA |
16 | ➜ | 1/2/559:571 | NA | NA |
17 | ➜ | 1/2/608:613 | NA | NA |
18 | ➜ | 1/2/816:824 | NA | NA |
19 | ➜ | 1/2/829:837 | NA | NA |
20 | ➜ | 1/2/881:897 | NA | NA |
21 | ➜ | 1/2/953:962 | NA | NA |
22 | ➜ | 1/2/990:995 | NA | NA |
23 | ➜ | 1/2/1050:1060 | NA | NA |
24 | ➜ | 1/2/1108:1117 | NA | NA |
25 | ➜ | 1/2/1137:1142 | NA | NA |
26 | ➜ | 1/2/1174:1179 | NA | NA |
27 | ➜ | 1/2/1241:1250 | NA | NA |
28 | ➜ | 1/2/1291:1300 | NA | NA |
29 | ➜ | 1/2/1349:1354 | NA | NA |
30 | ➜ | 1/2/1362:1369 | NA | NA |
31 | ➜ | 1/2/1417:1422 | NA | NA |
32 | ➜ | 1/2/1456:1462 | NA | NA |
33 | ➜ | 1/2/1560:1565 | NA | NA |
34 | ➜ | 1/2/1609:1620 | NA | NA |
35 | ➜ | 1/2/1653:1661 | NA | NA |
36 | ➜ | 1/2/1841:1846 | NA | NA |
Problematic loops
Valid loops
# | loop id | location | annotation | motif |
---|---|---|---|---|
1 | ➜ | 1/2/40:41,1/2/471:477,1/2/502:504 | NA | NA |
2 | ➜ | 1/2/672:675,1/2/913:918,1/2/1018:1019 | NA | NA |
3 | ➜ | 1/2/812:815,1/2/825:827,1/2/839:844 | NA | NA |
4 | ➜ | 1/2/934:937,1/2/981:989,1/2/996:1000 | NA | NA |
5 | ➜ | 1/2/1090:1092,1/2/1132:1136,1/2/1143:1147 | NA | NA |
6 | ➜ | 1/2/1214:1217,1/2/1640:1646,1/2/1668:1675 | NA | NA |
7 | ➜ | 1/2/1221:1224,1/2/1525:1527,1/2/1633:1636 | NA | NA |
8 | ➜ | 1/2/1233:1240,1/2/1251:1262,1/2/1511:1515 | NA | NA |
9 | ➜ | 1/2/1268:1273,1/2/1316:1320,1/2/1500:1506 | NA | NA |
10 | ➜ | 1/2/1336:1341,1/2/1380:1385,1/2/1477:1482 | NA | NA |
11 | ➜ | 1/2/1346:1347,1/2/1356:1359,1/2/1371:1375 | NA | NA |
12 | ➜ | 1/2/1387:1391,1/2/1446:1449,1/2/1471:1475 | NA | NA |
13 | ➜ | 1/2/1527:1531,1/2/1592:1599,1/2/1630:1633 | NA | NA |
Problematic loops
No problematic loops
Coloring options: