JAR3D
Query RF00168-3.98 completed
Run on Motif Atlas Version
using the Rfam secondary structure. Run with the CaCoFold secondary structure.
Loop 5 Hairpin loop
Column numbers: 46-77 - View nucleotides in PDB file(s)
Scored sequences and counts
UU----------GGGGUGAUGCCAAUG---AA 4
GGA---------GGAGCCAGUCCUGUG---AU 3
AGAAGUCGU---AUGGGACAUGUGUUG---A- 2
AGGUGUUAAGGAGAAGAACCUCCAAUA---CU 1
AGAAGCGAA---ACAAAGACGCUGAUG---AC 1
AGAAGUAUUU--AUGGUACAUAAGUUG---A- 1
AGAAGUUAUU--AAGGAACGUGUGUUG---A- 1
CGAGGCGAA---ACAAAGACGCCAAUG---AC 1
CGAGGCGAA---ACAAAGACGCCGACG---AC 1
AGAGGU------AUUUAAGGGCCGAUG---AA 1
CGAGGA------GUAUGGGCUCUUAUG---AA 1
CUA---------GGCUGACAGGGGCUGUUAAA 1
GAUAAU------UUGUCUGCUAACAAU---UA 1
GGAAGU------GGGUCACCACUUAUG---AA 1
GGAGAA------AGAUGAGUUUCCGUG---AA 1
GGAGAA------GAAUGAGCUUCAAUG---AA 1
GGAGAU------UUAAUGGAAUCUGUG---AU 1
GGAGGA------GAAUGAGAUCCGUUG---AG 1
UGAGGA------AGAUGGAUUCCGAUG---AA 1
AGAGG-------AGCCGUGAUCCGCUG---AA 1
AGAGG-------AGCCGUUGUCCAAUG---AC 1
AGAGG-------UGUUAAGGGCCGAUG---AA 1
CGAGU-------UGGAGCACAACAAAG---AC 1
GAAGA-------AUCUGACUGCUAGCA---GC 1
GGAGA-------AAGAUGGAUUCUGUG---AA 1
GGAGA-------UGGGUCACAUUGCUG---AU 1
GGAGG-------AACCGUAAUCCGCUG---AU 1
UGAGG-------CUGAUGGGGCCGAUG---AU 1
GAU---------AAACUGUCUGCAACA---GC 1
GAUUAC------UGUCUGCUAACAG------C 1
GGA---------GGAACCAGUCCGGGG---AA 1
GG----------AGCACAACAAAGACG---CG 1
UU----------GGGGUGAUGCCAAUG---AG 1
A-----------GAGUGGAUAACAAUG---AA 1
A-----------GAGUGGAUAACGAAG---AA 1
G-----------GAGUUAAGUGCUAAG---AA 1
U-----------GAGUGGAAAACGAUG---AA 1
U-----------GAGUGGAAAGCGAUG---AA 1
U-----------GAGUGGAGAACGAGG---AG 1
U-----------GAGUGGAUAACGAAG---AG 1
------------GAGUGGAUAACGAUG---A- 1
Click on headings to reorder table
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group HL_89346.1
Basepair signature:
|
0.00 | -118.75 | 12 | 11 |
|
| 2 |
Motif group HL_51921.1
Basepair signature:
|
0.00 | -136.38 | 11 | 9 |
|
| 3 |
Motif group HL_00317.1
Basepair signature:
|
0.00 | -166.63 | 15 | 14 |
|
| 4 |
Motif group HL_59564.1
Basepair signature:
|
0.00 | -173.95 | 15 | 14 |
|
| 5 |
Motif group HL_60293.1
Basepair signature:
|
0.00 | -218.38 | 12 | 12 |
G-quadruplex |
| 6 |
Motif group HL_10456.1
Basepair signature:
|
0.00 | -219.53 | 13 | 12 |
|
| 7 |
Motif group HL_14757.1
Basepair signature:
|
0.00 | -225.69 | 14 | 12 |
|
| 8 |
Motif group HL_85461.1
Basepair signature:
|
0.00 | -230.43 | 13 | 11 |
|
| 9 |
Motif group HL_91641.1
Basepair signature:
|
0.00 | -231.17 | 12 | 11 |
|
| 10 |
Motif group HL_73183.1
Basepair signature:
|
0.00 | -237.76 | 11 | 10 |
Pseudoknot geometry with G-bulge |
| 11 |
Motif group HL_12758.3
Basepair signature:
|
0.00 | -250.23 | 13 | 11 |
G-quadruplex |
| 12 |
Motif group HL_98870.1
Basepair signature:
|
0.00 | -255.13 | 12 | 10 |
|
| 13 |
Motif group HL_21400.1
Basepair signature:
|
0.00 | -275.45 | 13 | 13 |
G-quadruplex |
| 14 |
Motif group HL_02581.1
Basepair signature:
|
0.00 | -281.81 | 12 | 10 |
tRNA D-loop |
| 15 |
Motif group HL_73247.1
Basepair signature:
|
0.00 | -287.23 | 12 | 11 |
Pseudoknot geometry |
| 16 |
Motif group HL_88364.2
Basepair signature:
|
0.00 | -301.27 | 12 | 12 |
|
| 17 |
Motif group HL_64292.1
Basepair signature:
|
0.00 | -304.59 | 11 | 10 |
|
| 18 |
Motif group HL_74055.2
Basepair signature:
|
0.00 | -307.36 | 12 | 11 |
|
| 19 |
Motif group HL_81205.3
Basepair signature:
|
0.00 | -330.07 | 12 | 11 |
|
| 20 |
Motif group HL_05304.3
Basepair signature:
|
0.00 | -351.22 | 11 | 11 |
|
| 21 |
Motif group HL_70658.1
Basepair signature:
|
0.00 | -354.68 | 12 | 12 |
|
| 22 |
Motif group HL_84847.1
Basepair signature:
|
0.00 | -358.49 | 13 | 13 |
|
| 23 |
Motif group HL_07583.1
Basepair signature:
|
0.00 | -365.36 | 12 | 11 |
|
| 24 |
Motif group HL_68257.1
Basepair signature:
|
0.00 | -373.54 | 13 | 12 |
|
| 25 |
Motif group HL_41902.1
Basepair signature:
|
0.00 | -388.50 | 13 | 12 |
|
| 26 |
Motif group HL_07903.1
Basepair signature:
|
0.00 | -409.23 | 13 | 12 |
|
| 27 |
Motif group HL_91939.2
Basepair signature:
|
0.00 | -442.30 | 12 | 11 |
|
| 28 |
Motif group HL_74379.3
Basepair signature:
|
0.00 | -456.90 | 14 | 13 |
|
| 29 |
Motif group HL_20751.2
Basepair signature:
|
0.00 | -459.78 | 12 | 11 |
|
| 30 |
Motif group HL_41543.1
Basepair signature:
|
0.00 | -466.91 | 13 | 12 |
|
| 31 |
Motif group HL_86109.1
Basepair signature:
|
0.00 | -490.01 | 12 | 11 |
|
| 32 |
Motif group HL_60266.1
Basepair signature:
|
0.00 | -493.44 | 13 | 12 |
|
| 33 |
Motif group HL_11542.1
Basepair signature:
|
0.00 | -502.34 | 13 | 11 |
|
| 34 |
Motif group HL_92488.1
Basepair signature:
|
0.00 | -520.61 | 13 | 12 |
|
| 35 |
Motif group HL_16398.2
Basepair signature:
|
0.00 | -537.75 | 13 | 12 |
|
| 36 |
Motif group HL_23509.1
Basepair signature:
|
0.00 | -542.91 | 13 | 13 |
|
| 37 |
Motif group HL_73916.1
Basepair signature:
|
0.00 | -584.18 | 24 | 23 |
|
| 38 |
Motif group HL_90620.1
Basepair signature:
|
0.00 | -665.61 | 14 | 13 |
|
| 39 |
Motif group HL_67079.1
Basepair signature:
|
0.00 | -676.08 | 13 | 13 |
|
| 40 |
Motif group HL_99324.1
Basepair signature:
|
0.00 | -676.85 | 13 | 12 |
|
| 41 |
Motif group HL_93438.2
Basepair signature:
|
0.00 | -784.83 | 13 | 12 |
|
| 42 |
Motif group HL_53504.3
Basepair signature:
|
0.00 | -809.02 | 13 | 12 |
|
| 43 |
Motif group HL_36335.1
Basepair signature:
|
0.00 | -828.97 | 14 | 13 |
|
| 44 |
Motif group HL_66482.1
Basepair signature:
|
0.00 | -843.16 | 13 | 11 |
|
| 45 |
Motif group HL_08602.1
Basepair signature:
|
0.00 | -1002.37 | 14 | 12 |
|
| 46 |
Motif group HL_68767.1
Basepair signature:
|
0.00 | -1030.05 | 11 | 10 |
tRNA D-loop |
| 47 |
Motif group HL_63355.1
Basepair signature:
|
0.00 | -1157.53 | 14 | 13 |
|
| 48 |
Motif group HL_02483.1
Basepair signature:
|
0.00 | -1176.51 | 13 | 12 |
|
| 49 |
Motif group HL_40252.4
Basepair signature:
|
0.00 | -1213.36 | 12 | 10 |
|
| 50 |
Motif group HL_77436.5
Basepair signature:
|
0.00 | -1246.51 | 14 | 13 |
T-loop related |
| 51 |
Motif group HL_99769.3
Basepair signature:
|
0.00 | -1261.36 | 13 | 11 |
|
| 52 |
Motif group HL_06226.4
Basepair signature:
|
0.00 | -1291.96 | 12 | 12 |
|
| 53 |
Motif group HL_45785.1
Basepair signature:
|
0.00 | -1330.43 | 15 | 14 |
|
| 54 |
Motif group HL_02887.3
Basepair signature:
|
0.00 | -1341.06 | 14 | 14 |
T-loop with 3 stacked bulged bases |
| 55 |
Motif group HL_35354.1
Basepair signature:
|
0.00 | -1353.85 | 12 | 11 |
|
| 56 |
Motif group HL_53454.2
Basepair signature:
|
0.00 | -1395.92 | 13 | 12 |
|
| 57 |
Motif group HL_18423.1
Basepair signature:
|
0.00 | -1447.82 | 13 | 12 |
|
| 58 |
Motif group HL_69139.1
Basepair signature:
|
0.00 | -1543.68 | 13 | 12 |
|
| 59 |
Motif group HL_81545.2
Basepair signature:
|
0.00 | -1545.93 | 14 | 14 |
|
| 60 |
Motif group HL_01962.2
Basepair signature:
|
0.00 | -1549.90 | 14 | 13 |
|
| 61 |
Motif group HL_66853.7
Basepair signature:
|
0.00 | -1585.66 | 14 | 12 |
|
| 62 |
Motif group HL_20167.2
Basepair signature:
|
0.00 | -1664.31 | 14 | 13 |
|
| 63 |
Motif group HL_50860.2
Basepair signature:
|
0.00 | -1693.54 | 14 | 13 |
|
| 64 |
Motif group HL_75293.5
Basepair signature:
|
0.00 | -1733.21 | 13 | 13 |
|
| 65 |
Motif group HL_16991.1
Basepair signature:
|
0.00 | -2149.78 | 13 | 12 |
G-quadruplex fragment |
| 66 |
Motif group HL_04171.7
Basepair signature:
|
0.00 | -2179.54 | 13 | 13 |
|
| 67 |
Motif group HL_98864.1
Basepair signature:
|
0.00 | -2312.28 | 14 | 13 |
T-loop with unstacked turn |
| 68 |
Motif group HL_41464.2
Basepair signature:
|
0.00 | -2312.32 | 13 | 12 |
|
| 69 |
Motif group HL_85434.1
Basepair signature:
|
0.00 | -2350.83 | 13 | 13 |
|
| 70 |
Motif group HL_86769.4
Basepair signature:
|
0.00 | -2365.86 | 14 | 14 |
|
| 71 |
Motif group HL_18978.1
Basepair signature:
|
0.00 | -2409.58 | 14 | 13 |
|
| 72 |
Motif group HL_77082.1
Basepair signature:
|
0.00 | -2422.12 | 14 | 14 |
Pseudoknot geometry |
| 73 |
Motif group HL_88558.1
Basepair signature:
|
0.00 | -2433.68 | 13 | 11 |
|
| 74 |
Motif group HL_78284.1
Basepair signature:
|
0.00 | -2448.13 | 13 | 12 |
|
| 75 |
Motif group HL_49941.1
Basepair signature:
|
0.00 | -2493.46 | 13 | 12 |
tRNA D-loop |
| 76 |
Motif group HL_13971.1
Basepair signature:
|
0.00 | -2508.80 | 13 | 12 |
|
| 77 |
Motif group HL_33074.4
Basepair signature:
|
0.00 | -2514.70 | 14 | 13 |
U1 small nuclear ribonucleoprotein A binding hairpin |
| 78 |
Motif group HL_87553.1
Basepair signature:
|
0.00 | -2758.82 | 14 | 14 |
|
| 79 |
Motif group HL_61996.2
Basepair signature:
|
0.00 | -2955.50 | 13 | 13 |
|
| 80 |
Motif group HL_35677.3
Basepair signature:
|
0.00 | -3010.77 | 13 | 12 |
|
| 81 |
Motif group HL_31581.6
Basepair signature:
|
0.00 | -3056.19 | 13 | 12 |
|
| 82 |
Motif group HL_89881.5
Basepair signature:
|
0.00 | -3112.05 | 13 | 13 |
|
| 83 |
Motif group HL_93616.2
Basepair signature:
|
0.00 | -3114.79 | 13 | 12 |
tRNA D-loop |
| 84 |
Motif group HL_28252.8
Basepair signature:
|
0.00 | -3115.63 | 13 | 13 |
T-loop with 2 stacked bulged bases |
| 85 |
Motif group HL_81312.1
Basepair signature:
|
0.00 | -3312.63 | 14 | 12 |
|
| 86 |
Motif group HL_86012.1
Basepair signature:
|
0.00 | -3413.51 | 15 | 14 |
T-loop with unstacked turn |
| 87 |
Motif group HL_87463.1
Basepair signature:
|
0.00 | -3468.14 | 14 | 14 |
|
| 88 |
Motif group HL_04642.1
Basepair signature:
|
0.00 | -3483.56 | 13 | 12 |
tRNA D-loop |
| 89 |
Motif group HL_01255.1
Basepair signature:
|
0.00 | -3500.12 | 14 | 13 |
|
| 90 |
Motif group HL_83808.4
Basepair signature:
|
0.00 | -3515.13 | 14 | 13 |
Pseudoknot |
| 91 |
Motif group HL_57863.1
Basepair signature:
|
0.00 | -3536.46 | 13 | 13 |
G-quadruplex fragment |
| 92 |
Motif group HL_68572.1
Basepair signature:
|
0.00 | -3560.52 | 11 | 10 |
|
| 93 |
Motif group HL_23010.1
Basepair signature:
|
0.00 | -3644.96 | 14 | 13 |
|
| 94 |
Motif group HL_38649.1
Basepair signature:
|
0.00 | -3662.34 | 12 | 11 |
|
| 95 |
Motif group HL_98252.1
Basepair signature:
|
0.00 | -3665.03 | 15 | 14 |
|
| 96 |
Motif group HL_47732.1
Basepair signature:
|
0.00 | -3771.77 | 14 | 12 |
|
| 97 |
Motif group HL_50851.1
Basepair signature:
|
0.00 | -3782.38 | 12 | 12 |
G-quadruplex fragment |
| 98 |
Motif group HL_97756.2
Basepair signature:
|
0.00 | -3789.09 | 13 | 12 |
|
| 99 |
Motif group HL_07480.2
Basepair signature:
|
0.00 | -4017.38 | 13 | 13 |
|
| 100 |
Motif group HL_26934.1
Basepair signature:
|
0.00 | -4020.30 | 15 | 14 |
|
| 101 |
Motif group HL_04725.1
Basepair signature:
|
0.00 | -4101.36 | 14 | 14 |
|
| 102 |
Motif group HL_91503.7
Basepair signature:
|
0.00 | -4159.88 | 13 | 13 |
|
| 103 |
Motif group HL_20743.5
Basepair signature:
|
0.00 | -4162.00 | 14 | 13 |
|
| 104 |
Motif group HL_73266.9
Basepair signature:
|
0.00 | -4314.40 | 14 | 14 |
|
| 105 |
Motif group HL_29129.3
Basepair signature:
|
0.00 | -4388.44 | 14 | 13 |
|
| 106 |
Motif group HL_84299.4
Basepair signature:
|
0.00 | -4505.45 | 14 | 13 |
|
| 107 |
Motif group HL_15118.1
Basepair signature:
|
0.00 | -4566.09 | 14 | 13 |
|
| 108 |
Motif group HL_28075.1
Basepair signature:
|
0.00 | -4612.47 | 15 | 14 |
|
| 109 |
Motif group HL_29958.1
Basepair signature:
|
0.00 | -4614.11 | 13 | 12 |
|
| 110 |
Motif group HL_94376.1
Basepair signature:
|
0.00 | -4632.51 | 13 | 12 |
Pseudoknot geometry |
| 111 |
Motif group HL_55305.1
Basepair signature:
|
0.00 | -4770.47 | 14 | 13 |
|
| 112 |
Motif group HL_06059.6
Basepair signature:
|
0.00 | -4840.16 | 13 | 13 |
tRNA anticodon loop |
| 113 |
Motif group HL_64690.6
Basepair signature:
|
0.00 | -4842.73 | 13 | 13 |
|
| 114 |
Motif group HL_34964.1
Basepair signature:
|
0.00 | -4926.75 | 12 | 12 |
|
| 115 |
Motif group HL_58224.1
Basepair signature:
|
0.00 | -5072.92 | 14 | 13 |
|
| 116 |
Motif group HL_01609.3
Basepair signature:
|
0.00 | -5124.69 | 14 | 14 |
T-loop with 2 bulged bases not stacked |
| 117 |
Motif group HL_67407.5
Basepair signature:
|
0.00 | -5142.56 | 12 | 11 |
|
| 118 |
Motif group HL_04641.1
Basepair signature:
|
0.00 | -5301.21 | 14 | 13 |
|
| 119 |
Motif group HL_23115.1
Basepair signature:
|
0.00 | -5367.96 | 14 | 12 |
tRNA D-loop |
| 120 |
Motif group HL_55436.1
Basepair signature:
|
0.00 | -5401.30 | 13 | 13 |
|
| 121 |
Motif group HL_25061.1
Basepair signature:
|
0.00 | -5411.04 | 14 | 13 |
|
| 122 |
Motif group HL_19210.3
Basepair signature:
|
0.00 | -5426.72 | 14 | 13 |
|
| 123 |
Motif group HL_50779.4
Basepair signature:
|
0.00 | -5434.36 | 13 | 13 |
|
| 124 |
Motif group HL_45175.1
Basepair signature:
|
0.00 | -5641.42 | 13 | 12 |
tRNA D-loop |
| 125 |
Motif group HL_80411.1
Basepair signature:
|
0.00 | -5655.21 | 14 | 13 |
tRNA D-loop |
| 126 |
Motif group HL_70751.1
Basepair signature:
|
0.00 | -5655.84 | 14 | 12 |
|
| 127 |
Motif group HL_80599.2
Basepair signature:
|
0.00 | -5726.25 | 15 | 14 |
|
| 128 |
Motif group HL_29762.1
Basepair signature:
|
0.00 | -5733.92 | 14 | 13 |
|
| 129 |
Motif group HL_25847.2
Basepair signature:
|
0.00 | -5756.10 | 13 | 12 |
|
| 130 |
Motif group HL_36684.4
Basepair signature:
|
0.00 | -5827.52 | 13 | 12 |
|
| 131 |
Motif group HL_24792.1
Basepair signature:
|
0.00 | -5878.59 | 15 | 14 |
|
| 132 |
Motif group HL_50418.1
Basepair signature:
|
0.00 | -5938.59 | 12 | 12 |
|
| 133 |
Motif group HL_81538.2
Basepair signature:
|
0.00 | -5969.78 | 14 | 13 |
GNRA with tandem sheared |
| 134 |
Motif group HL_93135.1
Basepair signature:
|
0.00 | -6009.02 | 14 | 13 |
Pseudoknot |
| 135 |
Motif group HL_93383.1
Basepair signature:
|
0.00 | -6024.95 | 14 | 14 |
|
| 136 |
Motif group HL_08510.1
Basepair signature:
|
0.00 | -6034.11 | 15 | 14 |
|
| 137 |
Motif group HL_32735.2
Basepair signature:
|
0.00 | -6056.62 | 14 | 13 |
|
| 138 |
Motif group HL_09260.2
Basepair signature:
|
0.00 | -6108.72 | 13 | 12 |
tRNA D-loop |
| 139 |
Motif group HL_97733.1
Basepair signature:
|
0.00 | -6111.24 | 15 | 14 |
|
| 140 |
Motif group HL_74292.1
Basepair signature:
|
0.00 | -6220.25 | 14 | 13 |
|
| 141 |
Motif group HL_15802.1
Basepair signature:
|
0.00 | -6377.73 | 14 | 14 |
|
| 142 |
Motif group HL_59330.1
Basepair signature:
|
0.00 | -6515.00 | 16 | 15 |
|
| 143 |
Motif group HL_13529.1
Basepair signature:
|
0.00 | -6569.67 | 14 | 14 |
|
| 144 |
Motif group HL_78347.4
Basepair signature:
|
0.00 | -6582.54 | 13 | 12 |
|
| 145 |
Motif group HL_73255.1
Basepair signature:
|
0.00 | -6583.80 | 14 | 13 |
|
| 146 |
Motif group HL_18565.1
Basepair signature:
|
0.00 | -6713.83 | 14 | 14 |
|
| 147 |
Motif group HL_88205.2
Basepair signature:
|
0.00 | -6719.47 | 13 | 13 |
|
| 148 |
Motif group HL_04259.3
Basepair signature:
|
0.00 | -6752.24 | 14 | 14 |
GNRA with extra cWW |
| 149 |
Motif group HL_99867.1
Basepair signature:
|
0.00 | -6908.56 | 13 | 13 |
|
| 150 |
Motif group HL_85367.2
Basepair signature:
|
0.00 | -6938.01 | 15 | 13 |
|
| 151 |
Motif group HL_38046.1
Basepair signature:
|
0.00 | -6980.72 | 14 | 14 |
|
| 152 |
Motif group HL_58539.1
Basepair signature:
|
0.00 | -7076.36 | 13 | 12 |
|
| 153 |
Motif group HL_33983.1
Basepair signature:
|
0.00 | -7093.77 | 15 | 14 |
|
| 154 |
Motif group HL_10540.1
Basepair signature:
|
0.00 | -7219.12 | 15 | 14 |
|
| 155 |
Motif group HL_83632.1
Basepair signature:
|
0.00 | -7304.12 | 14 | 13 |
tRNA anticodon loop |
| 156 |
Motif group HL_80008.1
Basepair signature:
|
0.00 | -7349.32 | 16 | 14 |
|
| 157 |
Motif group HL_80362.1
Basepair signature:
|
0.00 | -7358.55 | 15 | 15 |
|
| 158 |
Motif group HL_20781.1
Basepair signature:
|
0.00 | -7358.91 | 14 | 12 |
|
| 159 |
Motif group HL_72628.1
Basepair signature:
|
0.00 | -7372.63 | 15 | 14 |
|
| 160 |
Motif group HL_20811.4
Basepair signature:
|
0.00 | -7478.82 | 13 | 12 |
tRNA D-loop |
| 161 |
Motif group HL_42046.2
Basepair signature:
|
0.00 | -7562.04 | 15 | 14 |
|
| 162 |
Motif group HL_50537.6
Basepair signature:
|
0.00 | -7678.97 | 14 | 14 |
tRNA anticodon loop with synthetase |
| 163 |
Motif group HL_38808.1
Basepair signature:
|
0.00 | -7796.19 | 14 | 13 |
|
| 164 |
Motif group HL_37369.2
Basepair signature:
|
0.00 | -7833.11 | 16 | 15 |
|
| 165 |
Motif group HL_48417.5
Basepair signature:
|
0.00 | -7877.04 | 14 | 12 |
|
| 166 |
Motif group HL_80241.1
Basepair signature:
|
0.00 | -7901.63 | 14 | 13 |
|
| 167 |
Motif group HL_37824.7
Basepair signature:
|
0.00 | -7927.00 | 15 | 14 |
GNRA |
| 168 |
Motif group HL_99748.1
Basepair signature:
|
0.00 | -8097.30 | 16 | 15 |
Other HL |
| 169 |
Motif group HL_42998.2
Basepair signature:
|
0.00 | -8182.45 | 14 | 14 |
|
| 170 |
Motif group HL_89567.2
Basepair signature:
|
0.00 | -8204.91 | 14 | 14 |
|
| 171 |
Motif group HL_27670.2
Basepair signature:
|
0.00 | -8218.01 | 14 | 14 |
T-loop with unstacked turn |
| 172 |
Motif group HL_25967.2
Basepair signature:
|
0.00 | -8228.48 | 15 | 14 |
|
| 173 |
Motif group HL_85993.1
Basepair signature:
|
0.00 | -8322.82 | 15 | 14 |
|
| 174 |
Motif group HL_51447.1
Basepair signature:
|
0.00 | -8387.62 | 16 | 15 |
|
| 175 |
Motif group HL_89893.1
Basepair signature:
|
0.00 | -8391.02 | 16 | 15 |
|
| 176 |
Motif group HL_12870.1
Basepair signature:
|
0.00 | -8511.25 | 14 | 13 |
|
| 177 |
Motif group HL_47854.1
Basepair signature:
|
0.00 | -8521.48 | 15 | 15 |
|
| 178 |
Motif group HL_07951.3
Basepair signature:
|
0.00 | -8538.72 | 14 | 12 |
tRNA D-loop |
| 179 |
Motif group HL_97983.1
Basepair signature:
|
0.00 | -8675.82 | 14 | 14 |
|
| 180 |
Motif group HL_21372.1
Basepair signature:
|
0.00 | -8701.09 | 15 | 14 |
|
| 181 |
Motif group HL_02817.2
Basepair signature:
|
0.00 | -8764.37 | 15 | 15 |
|
| 182 |
Motif group HL_09452.1
Basepair signature:
|
0.00 | -8781.79 | 14 | 13 |
|
| 183 |
Motif group HL_22622.1
Basepair signature:
|
0.00 | -8790.57 | 15 | 14 |
|
| 184 |
Motif group HL_22584.6
Basepair signature:
|
0.00 | -9046.26 | 15 | 15 |
Fab BL3-6 binding hairpin with tSW |
| 185 |
Motif group HL_20535.2
Basepair signature:
|
0.00 | -9099.48 | 15 | 13 |
|
| 186 |
Motif group HL_10453.3
Basepair signature:
|
0.00 | -9127.60 | 15 | 14 |
tRNA anticodon loop |
| 187 |
Motif group HL_99040.1
Basepair signature:
|
0.00 | -9127.70 | 17 | 16 |
|
| 188 |
Motif group HL_04783.2
Basepair signature:
|
0.00 | -9194.64 | 14 | 14 |
|
| 189 |
Motif group HL_00914.1
Basepair signature:
|
0.00 | -9203.24 | 15 | 14 |
|
| 190 |
Motif group HL_37344.1
Basepair signature:
|
0.00 | -9572.14 | 15 | 15 |
|
| 191 |
Motif group HL_89199.2
Basepair signature:
|
0.00 | -9642.23 | 16 | 16 |
Mini UNCG |
| 192 |
Motif group HL_67667.2
Basepair signature:
|
0.00 | -9745.87 | 16 | 15 |
|
| 193 |
Motif group HL_07886.3
Basepair signature:
|
0.00 | -9999.00 | 15 | 14 |
|
| 194 |
Motif group HL_08100.1
Basepair signature:
|
0.00 | -9999.00 | 15 | 15 |
|
| 195 |
Motif group HL_13189.1
Basepair signature:
|
0.00 | -9999.00 | 17 | 16 |
|
| 196 |
Motif group HL_13963.3
Basepair signature:
|
0.00 | -9999.00 | 14 | 14 |
|
| 197 |
Motif group HL_15574.1
Basepair signature:
|
0.00 | -9999.00 | 15 | 15 |
|
| 198 |
Motif group HL_22135.1
Basepair signature:
|
0.00 | -9999.00 | 17 | 17 |
|
| 199 |
Motif group HL_26631.1
Basepair signature:
|
0.00 | -9999.00 | 17 | 17 |
|
| 200 |
Motif group HL_27483.1
Basepair signature:
|
0.00 | -9999.00 | 15 | 14 |
|
| 201 |
Motif group HL_28791.1
Basepair signature:
|
0.00 | -9999.00 | 16 | 16 |
|
| 202 |
Motif group HL_29966.1
Basepair signature:
|
0.00 | -9999.00 | 16 | 16 |
|
| 203 |
Motif group HL_30068.2
Basepair signature:
|
0.00 | -9999.00 | 14 | 14 |
|
| 204 |
Motif group HL_30680.3
Basepair signature:
|
0.00 | -9999.00 | 14 | 14 |
Pseudoknot geometry |
| 205 |
Motif group HL_31585.4
Basepair signature:
|
0.00 | -9999.00 | 14 | 14 |
Purine riboswitch |
| 206 |
Motif group HL_32346.4
Basepair signature:
|
0.00 | -9999.00 | 17 | 16 |
|
| 207 |
Motif group HL_32392.1
Basepair signature:
|
0.00 | -9999.00 | 16 | 16 |
|
| 208 |
Motif group HL_34617.5
Basepair signature:
|
0.00 | -9999.00 | 16 | 16 |
UNCG |
| 209 |
Motif group HL_35941.1
Basepair signature:
|
0.00 | -9999.00 | 17 | 17 |
|
| 210 |
Motif group HL_38168.1
Basepair signature:
|
0.00 | -9999.00 | 16 | 15 |
|
| 211 |
Motif group HL_38901.2
Basepair signature:
|
0.00 | -9999.00 | 16 | 16 |
tRNA D-loop |
| 212 |
Motif group HL_39243.1
Basepair signature:
|
0.00 | -9999.00 | 15 | 14 |
|
| 213 |
Motif group HL_43517.1
Basepair signature:
|
0.00 | -9999.00 | 16 | 16 |
|
| 214 |
Motif group HL_46501.1
Basepair signature:
|
0.00 | -9999.00 | 16 | 16 |
|
| 215 |
Motif group HL_47787.2
Basepair signature:
|
0.00 | -9999.00 | 15 | 14 |
|
| 216 |
Motif group HL_48778.2
Basepair signature:
|
0.00 | -9999.00 | 16 | 16 |
Mini UNCG |
| 217 |
Motif group HL_49922.4
Basepair signature:
|
0.00 | -9999.00 | 16 | 15 |
|
| 218 |
Motif group HL_50006.2
Basepair signature:
|
0.00 | -9999.00 | 14 | 14 |
|
| 219 |
Motif group HL_50318.1
Basepair signature:
|
0.00 | -9999.00 | 15 | 15 |
|
| 220 |
Motif group HL_52953.3
Basepair signature:
|
0.00 | -9999.00 | 16 | 16 |
|
| 221 |
Motif group HL_53890.2
Basepair signature:
|
0.00 | -9999.00 | 15 | 15 |
|
| 222 |
Motif group HL_55195.3
Basepair signature:
|
0.00 | -9999.00 | 16 | 16 |
|
| 223 |
Motif group HL_56131.2
Basepair signature:
|
0.00 | -9999.00 | 15 | 14 |
|
| 224 |
Motif group HL_56334.1
Basepair signature:
|
0.00 | -9999.00 | 16 | 16 |
Mini UNCG |
| 225 |
Motif group HL_56676.1
Basepair signature:
|
0.00 | -9999.00 | 16 | 16 |
|
| 226 |
Motif group HL_57176.2
Basepair signature:
|
0.00 | -9999.00 | 15 | 15 |
Pseudoknot geometry with 3' bulge |
| 227 |
Motif group HL_57875.1
Basepair signature:
|
0.00 | -9999.00 | 15 | 15 |
|
| 228 |
Motif group HL_59735.5
Basepair signature:
|
0.00 | -9999.00 | 16 | 15 |
|
| 229 |
Motif group HL_59843.1
Basepair signature:
|
0.00 | -9999.00 | 16 | 15 |
|
| 230 |
Motif group HL_60914.1
Basepair signature:
|
0.00 | -9999.00 | 17 | 17 |
|
| 231 |
Motif group HL_62934.1
Basepair signature:
|
0.00 | -9999.00 | 16 | 15 |
|
| 232 |
Motif group HL_65313.1
Basepair signature:
|
0.00 | -9999.00 | 16 | 16 |
|
| 233 |
Motif group HL_65794.5
Basepair signature:
|
0.00 | -9999.00 | 15 | 15 |
Pseudoknot geometry |
| 234 |
Motif group HL_66103.1
Basepair signature:
|
0.00 | -9999.00 | 16 | 15 |
|
| 235 |
Motif group HL_69752.2
Basepair signature:
|
0.00 | -9999.00 | 16 | 16 |
|
| 236 |
Motif group HL_70782.2
Basepair signature:
|
0.00 | -9999.00 | 16 | 16 |
|
| 237 |
Motif group HL_71391.1
Basepair signature:
|
0.00 | -9999.00 | 16 | 16 |
|
| 238 |
Motif group HL_75660.5
Basepair signature:
|
0.00 | -9999.00 | 16 | 15 |
|
| 239 |
Motif group HL_76094.1
Basepair signature:
|
0.00 | -9999.00 | 17 | 17 |
|
| 240 |
Motif group HL_77600.2
Basepair signature:
|
0.00 | -9999.00 | 13 | 13 |
|
| 241 |
Motif group HL_78197.1
Basepair signature:
|
0.00 | -9999.00 | 14 | 13 |
|
| 242 |
Motif group HL_78677.1
Basepair signature:
|
0.00 | -9999.00 | 17 | 17 |
|
| 243 |
Motif group HL_80709.3
Basepair signature:
|
0.00 | -9999.00 | 16 | 16 |
|
| 244 |
Motif group HL_80922.2
Basepair signature:
|
0.00 | -9999.00 | 14 | 13 |
|
| 245 |
Motif group HL_81100.2
Basepair signature:
|
0.00 | -9999.00 | 16 | 16 |
|
| 246 |
Motif group HL_82710.2
Basepair signature:
|
0.00 | -9999.00 | 16 | 16 |
|
| 247 |
Motif group HL_86870.2
Basepair signature:
|
0.00 | -9999.00 | 15 | 14 |
|
| 248 |
Motif group HL_86883.1
Basepair signature:
|
0.00 | -9999.00 | 17 | 16 |
|
| 249 |
Motif group HL_87954.2
Basepair signature:
|
0.00 | -9999.00 | 15 | 15 |
|
| 250 |
Motif group HL_93324.4
Basepair signature:
|
0.00 | -9999.00 | 14 | 13 |
Pseudoknot geometry |
| 251 |
Motif group HL_93535.1
Basepair signature:
|
0.00 | -9999.00 | 16 | 15 |
|
| 252 |
Motif group HL_94980.1
Basepair signature:
|
0.00 | -9999.00 | 18 | 18 |
|
| 253 |
Motif group HL_97917.2
Basepair signature:
|
0.00 | -9999.00 | 15 | 14 |
|