RNA 3D Hub

JAR3D Query RF00168-3.98 completed
Run on Motif Atlas Version using the Rfam secondary structure. Run with the CaCoFold secondary structure.

Rfam family RF00168 maps to these 16 chains: 3D0U|1|A, 3D0X|1|A, 3DIG|1|X, 3DIL|1|A, 3DIM|1|A, 3DIO|1|X, 3DIQ|1|A, 3DIR|1|A, 3DIS|1|A, 3DIX|1|A, 3DIY|1|A, 3DIZ|1|A, 3DJ0|1|A, 3DJ2|1|A, 4ERJ|1|A, 4ERL|1|A See more about them at RNA 3D Hub by filtering on the chain or the Rfam family.

Loop 7 Hairpin loop

Column numbers: 119-133 - View nucleotides in PDB file(s) 
    Scored sequences and counts

    
    C---GUCA------U    4

    
    GGCUGGCC-A----C    3

    
    UCU-CUUU-GUUUAG    2

    
    UUC-CAUA-A----A    2

    
    AU--AGCA-G----U    2

    
    A---GUCA------U    2

    
    U---AUCA------A    2

    
    UUU-CUUU-GUAUCG    1

    
    CUUCCUUAAG----G    1

    
    AAUACUUU-A----A    1

    
    GAAUCUCA-U----G    1

    
    GUCUGGUC-A----C    1

    
    UUCCUUAA-A----G    1

    
    AAC-CAUC-U----U    1

    
    AGCCGAUC------C    1

    
    AUC-CACU-C----G    1

    
    CAGUGACC------G    1

    
    CCCCAUCG------G    1

    
    UUU-GACC-G----G    1

    
    A---CUCAUU----U    1

    
    ACC-AUAA------A    1

    
    AU--CGCA-G----C    1

    
    AUU-CGGC------U    1

    
    CC--CUUA-A----U    1

    
    GCC-AUUC------A    1

    
    GCU-CAUA------U    1

    
    GUG-CGGC------A    1

    
    UCU-CAUU------U    1

    
    UG--UUCU-U----G    1

    
    C---GCUC-A----G    1

    
    U---AGCA-G----C    1

    
    UUC-GGCC-------    1

    
    A---GUCG------U    1

    
    C---AUCA------A    1

    
    U---AUCG------A    1

    
    U---AUCU------A    1

    
    U---GCUC------A    1
Click on headings to reorder table
# Matching motif group Acceptance Rate Mean Cutoff Score Full Edit Distance Interior Edit Distance Basepair Diagram and most common annotation
1

Motif group HL_78347.4

Basepair signature:
cWW-F-F-F-F

27.66 -84.69 5 3

2

Motif group HL_53890.2

Basepair signature:
cWW-F-F-F

27.66 -129.25 4 3

3

Motif group HL_70782.2

Basepair signature:
cWW-F

27.66 -775.23 4 3

4

Motif group HL_48417.5

Basepair signature:
cWW-F-F

25.53 -88.63 3 2

5

Motif group HL_93535.1

Basepair signature:
cWW-F-F-F-F

25.53 -142.78 5 3

6

Motif group HL_56676.1

Basepair signature:
cWW-F-F

25.53 -190.87 5 3

7

Motif group HL_71391.1

Basepair signature:
cWW-F-F-F-F

23.40 -188.81 5 3

8

Motif group HL_65794.5

Basepair signature:
cWW-F-F-F-F

23.40 -782.53 4 3

Pseudoknot geometry

9

Motif group HL_75660.5

Basepair signature:
cWW-F

23.40 -834.89 4 3

10

Motif group HL_47787.2

Basepair signature:
cWW-F-F-F-F

21.28 -159.78 4 3

11

Motif group HL_50006.2

Basepair signature:
cWW-F-F

19.15 -88.98 5 3

12

Motif group HL_13963.3

Basepair signature:
cWW-F-F

19.15 -95.49 5 3

13

Motif group HL_34617.5

Basepair signature:
cWW-tSW-F

19.15 -200.99 4 3

UNCG

14

Motif group HL_04783.2

Basepair signature:
cWW-F-F-F

17.02 -112.65 4 3

15

Motif group HL_13189.1

Basepair signature:
cWW-F-F

17.02 -148.44 5 4

16

Motif group HL_57875.1

Basepair signature:
cWW-F-F

17.02 -170.81 4 3

17

Motif group HL_50318.1

Basepair signature:
cWW-cSH-F-F

14.89 -127.44 6 5

18

Motif group HL_43517.1

Basepair signature:
cWW-F-F-F

14.89 -164.56 5 4

19

Motif group HL_52953.3

Basepair signature:
cWW-F-F-F-F

12.77 -1091.69 5 4

20

Motif group HL_33983.1

Basepair signature:
cWW-F-F-F-F-F

10.64 -78.85 6 4

21

Motif group HL_56131.2

Basepair signature:
cWW-F-F

10.64 -80.50 4 3

22

Motif group HL_38901.2

Basepair signature:
cWW-F-cSH

10.64 -853.79 5 4

tRNA D-loop

23

Motif group HL_30680.3

Basepair signature:
cWW-F-F-F-F-F

8.51 -2985.75 4 3

Pseudoknot geometry

24

Motif group HL_18565.1

Basepair signature:
cWW-cWW-F-F-F-F

6.38 -73.68 5 4

25

Motif group HL_20535.2

Basepair signature:
cWW-F-F-F-F

6.38 -76.69 5 4

26

Motif group HL_20167.2

Basepair signature:
cWW-F-F-F-F-F-F

6.38 -86.97 5 4

27

Motif group HL_77082.1

Basepair signature:
cWW-F-F-F-F-F-F

6.38 -90.39 4 3

Pseudoknot geometry

28

Motif group HL_85434.1

Basepair signature:
cWW-cWW-F-F-F-F-F-F

6.38 -91.46 6 5

29

Motif group HL_21372.1

Basepair signature:
cWW-F-cSH-F-F

6.38 -110.81 5 4

30

Motif group HL_72628.1

Basepair signature:
cWW-tSH-F-F-F-F

6.38 -112.60 6 4

31

Motif group HL_62934.1

Basepair signature:
cWW-tSH-F

6.38 -145.86 5 3

32

Motif group HL_82710.2

Basepair signature:
cWW-F-F-F

6.38 -193.91 5 4

33

Motif group HL_48778.2

Basepair signature:
cWW-F

6.38 -869.24 4 3

Mini UNCG

34

Motif group HL_80362.1

Basepair signature:
cWW-F-F-F

6.38 -2011.14 6 4

35

Motif group HL_81100.2

Basepair signature:
cWW

6.38 -4311.17 5 4

36

Motif group HL_15802.1

Basepair signature:
cWW-cWW-F-F-F

4.26 -62.50 6 4

37

Motif group HL_97733.1

Basepair signature:
cWW-F-F-F-cSH-F

4.26 -66.46 6 5

38

Motif group HL_86012.1

Basepair signature:
cWW-tWH-F-F-F-F

4.26 -69.67 5 4

T-loop with unstacked turn

39

Motif group HL_45175.1

Basepair signature:
cWW-cWS-F-F

4.26 -90.25 5 4

tRNA D-loop

40

Motif group HL_87553.1

Basepair signature:
cWW-F-F-F-F-F

4.26 -91.41 4 3

41

Motif group HL_80008.1

Basepair signature:
cWW-F-F-F-cSH-F

4.26 -93.79 6 4

42

Motif group HL_10453.3

Basepair signature:
cWW-F-F-F-F-F

4.26 -98.31 4 3

tRNA anticodon loop

43

Motif group HL_78197.1

Basepair signature:
cWW-F-F-F-F-F-F

4.26 -101.41 4 3

44

Motif group HL_73266.9

Basepair signature:
cWW-F-F-cSW-cSH-F

4.26 -116.05 5 4

45

Motif group HL_93324.4

Basepair signature:
cWW-F-F-F-F-F-F

4.26 -122.86 4 3

Pseudoknot geometry

46

Motif group HL_73255.1

Basepair signature:
cWW-F-F-F-F-F-F

4.26 -124.33 6 5

47

Motif group HL_25847.2

Basepair signature:
cWW-F-cSH-tHW-F-F-F

4.26 -126.50 7 6

48

Motif group HL_66103.1

Basepair signature:
cWW-F-F

4.26 -130.17 5 3

49

Motif group HL_06059.6

Basepair signature:
cWW-F-F-F-F-F-F-F

4.26 -141.81 4 3

tRNA anticodon loop

50

Motif group HL_42046.2

Basepair signature:
cWW-tSS-F-F-F

4.26 -142.67 5 4

51

Motif group HL_59843.1

Basepair signature:
cWW-F-F-F-F

4.26 -167.54 5 4

52

Motif group HL_32392.1

Basepair signature:
cWW-F-F

4.26 -844.19 5 4

53

Motif group HL_56334.1

Basepair signature:
cWW-F

4.26 -1058.34 4 3

Mini UNCG

54

Motif group HL_55195.3

Basepair signature:
cWW-F

4.26 -1081.03 5 3

55

Motif group HL_28791.1

Basepair signature:
cWW-F-F-F-F

4.26 -1087.41 5 4

56

Motif group HL_35941.1

Basepair signature:
cWW-F

4.26 -2610.31 5 4

57

Motif group HL_78677.1

Basepair signature:
cWW-F-F

4.26 -2615.97 5 4

58

Motif group HL_83808.4

Basepair signature:
cWW-tWW-F-F-F

2.13 -61.48 6 5

Pseudoknot

59

Motif group HL_98864.1

Basepair signature:
cWW-tWH-F-F-F-F-F-F

2.13 -74.33 6 5

T-loop with unstacked turn

60

Motif group HL_66853.7

Basepair signature:
cWW-cWS-F-cSH

2.13 -76.56 6 4

61

Motif group HL_86769.4

Basepair signature:
cWW-cWW-cSH-F

2.13 -77.63 4 3

62

Motif group HL_38808.1

Basepair signature:
cWW-cWW

2.13 -78.92 5 4

63

Motif group HL_93438.2

Basepair signature:
cWW-F-F-F-F-F-F-F-F

2.13 -87.59 5 4

64

Motif group HL_45785.1

Basepair signature:
cWW-F-F-F-F-cSH-F-F

2.13 -96.18 7 6

65

Motif group HL_97917.2

Basepair signature:
cWW-F-F-F-F

2.13 -98.92 5 3

66

Motif group HL_49941.1

Basepair signature:
cWW-F-F-F-F-F

2.13 -104.82 6 5

tRNA D-loop

67

Motif group HL_75293.5

Basepair signature:
cWW-F-F-F-F-F-F-F-F

2.13 -115.55 6 5

68

Motif group HL_39243.1

Basepair signature:
cWW-F-F-F-F

2.13 -126.42 5 4

69

Motif group HL_89567.2

Basepair signature:
cWW-F-F-F

2.13 -130.03 5 3

70

Motif group HL_89893.1

Basepair signature:
cWW-F-F-F-F

2.13 -139.54 6 4

71

Motif group HL_31585.4

Basepair signature:
cWW-F-F-F-F-F

2.13 -143.09 4 3

Purine riboswitch

72

Motif group HL_86870.2

Basepair signature:
cWW-F-F-F

2.13 -143.91 4 3

73

Motif group HL_27483.1

Basepair signature:
cWW-F

2.13 -161.46 5 4

74

Motif group HL_57176.2

Basepair signature:
cWW-F-F-F

2.13 -816.74 4 3

Pseudoknot geometry with 3' bulge

75

Motif group HL_99040.1

Basepair signature:
F-F-F-F-F-F

2.13 -901.13 5 4

76

Motif group HL_65313.1

Basepair signature:
cWW-F-F-F

2.13 -1063.90 5 5

77

Motif group HL_29966.1

Basepair signature:
cWW-F-F-F

2.13 -1085.22 5 4

78

Motif group HL_32346.4

Basepair signature:
cWW-F

2.13 -1106.42 5 4

79

Motif group HL_91503.7

Basepair signature:
cWW-F-F-F-F-F-F-F

2.13 -1619.66 6 5

80

Motif group HL_35677.3

Basepair signature:
cWW-F-F-F-F-F-F-F

2.13 -1923.87 5 4

81

Motif group HL_01255.1

Basepair signature:
F-F-F-F-F-F-F-F

2.13 -2002.32 7 6

82

Motif group HL_59330.1

Basepair signature:
cWW-F-F-F-F-F

2.13 -2185.99 6 4

83

Motif group HL_09452.1

Basepair signature:
cWW-F-F-F

2.13 -2431.64 6 4

84

Motif group HL_77600.2

Basepair signature:
cWW-F-F-F-F-F

2.13 -3427.43 4 4

85

Motif group HL_26934.1

Basepair signature:
cWW-F-F-F-F-F-F

0.00 -71.37 5 4

86

Motif group HL_04642.1

Basepair signature:
cWW-F-F-F-F-F

0.00 -75.28 6 4

tRNA D-loop

87

Motif group HL_58224.1

Basepair signature:
cWW-F-F-F-F-F

0.00 -80.38 6 5

88

Motif group HL_50537.6

Basepair signature:
cWW-F-F-F

0.00 -80.90 5 4

tRNA anticodon loop with synthetase

89

Motif group HL_99748.1

Basepair signature:
cWW-F-F-cSH

0.00 -82.00 5 4

Other HL

90

Motif group HL_18978.1

Basepair signature:
cWW-F-F-tHW-F-F-F

0.00 -82.86 6 5

91

Motif group HL_64690.6

Basepair signature:
cWW-cSW-F-F-F-F

0.00 -84.55 5 4

92

Motif group HL_02887.3

Basepair signature:
cWW-tWH-F-F-F-F-F-F

0.00 -87.27 6 5

T-loop with 3 stacked bulged bases

93

Motif group HL_83632.1

Basepair signature:
cWW-F-F-F-F-F-F

0.00 -87.39 5 4

tRNA anticodon loop

94

Motif group HL_38046.1

Basepair signature:
cWW-F-F-F-F-F-F

0.00 -88.81 6 5

95

Motif group HL_68257.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F

0.00 -88.92 6 6

96

Motif group HL_57863.1

Basepair signature:
cWW-F-F-cWH-cWH-F

0.00 -90.15 7 6

G-quadruplex fragment

97

Motif group HL_50860.2

Basepair signature:
cWW-F-cWH-F-F-F-F

0.00 -92.64 5 4

98

Motif group HL_87463.1

Basepair signature:
cWW-cWW-F-F-F-F-F

0.00 -94.37 7 6

99

Motif group HL_25061.1

Basepair signature:
cWW-F-F-F-F

0.00 -95.29 6 5

100

Motif group HL_18423.1

Basepair signature:
cWW-tSH-tHS-F

0.00 -97.87 6 5

101

Motif group HL_67079.1

Basepair signature:
cWW-F-F-F-F-F-F-F

0.00 -98.97 6 5

102

Motif group HL_20743.5

Basepair signature:
cWW-cWW-F-F-F-F

0.00 -102.15 6 4

103

Motif group HL_89881.5

Basepair signature:
cWW-tHW-F-F-F-F-F-F

0.00 -102.24 6 5

104

Motif group HL_04641.1

Basepair signature:
cWW-F-F-F-F-F

0.00 -105.75 7 5

105

Motif group HL_98252.1

Basepair signature:
cWW-tWW-F-F-F-F

0.00 -106.32 7 6

106

Motif group HL_41543.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F

0.00 -108.08 7 6

107

Motif group HL_99769.3

Basepair signature:
cWW-cWW-F-F-F-F

0.00 -109.00 6 6

108

Motif group HL_85367.2

Basepair signature:
cWW-F-F-F-F-F-F

0.00 -110.09 5 4

109

Motif group HL_61996.2

Basepair signature:
cWW-tWH-F-F-F

0.00 -110.39 5 4

110

Motif group HL_37344.1

Basepair signature:
cWW-F-F

0.00 -110.50 5 4

111

Motif group HL_29129.3

Basepair signature:
cWW-tWH-F-F-F-F

0.00 -110.99 7 6

112

Motif group HL_41464.2

Basepair signature:
cWW-F-F-F-F-F

0.00 -112.26 6 4

113

Motif group HL_84299.4

Basepair signature:
cWW-F-F-F-F-F-F

0.00 -115.21 5 4

114

Motif group HL_93616.2

Basepair signature:
cWW-cWS-F-F-F-F

0.00 -115.60 7 6

tRNA D-loop

115

Motif group HL_01609.3

Basepair signature:
cWW-tWH-F-F-F

0.00 -117.07 4 3

T-loop with 2 bulged bases not stacked

116

Motif group HL_06226.4

Basepair signature:
cWW-F-F-F-F-F-F-F

0.00 -117.71 7 5

117

Motif group HL_23010.1

Basepair signature:
cWW-F-F-F-F-F-F

0.00 -119.45 7 6

118

Motif group HL_02483.1

Basepair signature:
cWW-tWH-F-cSH-F-F-F

0.00 -120.13 8 6

119

Motif group HL_81545.2

Basepair signature:
cWW-tWH-F-F-F-F

0.00 -121.94 6 6

120

Motif group HL_80922.2

Basepair signature:
cWW-tSH-F

0.00 -122.39 5 4

121

Motif group HL_01962.2

Basepair signature:
cWW-tWH-tWH-F

0.00 -124.54 6 5

122

Motif group HL_28075.1

Basepair signature:
cWW-F-F-F-F-F

0.00 -124.98 5 4

123

Motif group HL_74379.3

Basepair signature:
cWW-F-F-cSS-cSS-F-F-F

0.00 -125.73 8 7

124

Motif group HL_27670.2

Basepair signature:
cWW-tWH-F-F

0.00 -126.14 5 4

T-loop with unstacked turn

125

Motif group HL_90620.1

Basepair signature:
cWW-F-F-F-F-cSW-cSH-F

0.00 -126.81 7 6

126

Motif group HL_00914.1

Basepair signature:
cWW-F-F-F-F

0.00 -128.59 5 4

127

Motif group HL_40252.4

Basepair signature:
cWW-tSH-cWS-F

0.00 -130.05 7 6

128

Motif group HL_10540.1

Basepair signature:
cWW-F-F-F-F-F

0.00 -130.92 5 4

129

Motif group HL_16991.1

Basepair signature:
cWW-cWH-cWH-F-cWH-F

0.00 -131.12 8 7

G-quadruplex fragment

130

Motif group HL_13529.1

Basepair signature:
cWW-F-F-F-F

0.00 -131.34 5 4

131

Motif group HL_25967.2

Basepair signature:
cWW-cWW-F-F-F

0.00 -131.73 5 4

132

Motif group HL_20811.4

Basepair signature:
cWW-cWS-F

0.00 -133.21 5 4

tRNA D-loop

133

Motif group HL_23509.1

Basepair signature:
cSH-F-F-F-F-F-F-F-F-F

0.00 -133.73 8 7

134

Motif group HL_36335.1

Basepair signature:
cWW-F-F-cSS-cSS-F

0.00 -134.02 7 6

135

Motif group HL_28252.8

Basepair signature:
cWW-tWH-F-F-F-F-F

0.00 -134.36 5 4

T-loop with 2 stacked bulged bases

136

Motif group HL_53454.2

Basepair signature:
cWW-tSH-F-F-F-F-F

0.00 -134.66 6 5

137

Motif group HL_47854.1

Basepair signature:
cWW-F-F-F-F

0.00 -138.63 6 5

138

Motif group HL_04171.7

Basepair signature:
cWW-cWW-F-F-F-F-F-F

0.00 -139.18 6 6

139

Motif group HL_81538.2

Basepair signature:
cWW-tSH-F-F-F-F

0.00 -139.32 4 3

GNRA with tandem sheared

140

Motif group HL_70658.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F-F

0.00 -139.82 8 7

141

Motif group HL_91939.2

Basepair signature:
cWW-tSH-tHH-tWW-F-F-F

0.00 -140.39 7 6

142

Motif group HL_07480.2

Basepair signature:
cWW-tSH-F-F-F

0.00 -141.53 7 6

143

Motif group HL_77436.5

Basepair signature:
cWW-F-F-F-F-F

0.00 -142.77 4 3

T-loop related

144

Motif group HL_02817.2

Basepair signature:
cWW-F-F-F-F

0.00 -145.22 5 4

145

Motif group HL_41902.1

Basepair signature:
cWW-cWW-cWH-F-F-F-F-F

0.00 -147.76 9 8

146

Motif group HL_04259.3

Basepair signature:
cWW-F-F-F-F-F-F

0.00 -148.12 4 3

GNRA with extra cWW

147

Motif group HL_08100.1

Basepair signature:
cWW-F-F-F

0.00 -148.53 5 3

148

Motif group HL_08602.1

Basepair signature:
cWW-cSS-F-cSS-F-F-F-F-F

0.00 -150.05 8 7

149

Motif group HL_60266.1

Basepair signature:
cWW-cWW-tWH-F-F-F-F

0.00 -151.18 8 6

150

Motif group HL_37369.2

Basepair signature:
cWW-tSH-F-F-F

0.00 -152.42 4 3

151

Motif group HL_05304.3

Basepair signature:
cWW-cWW-F-F-tSH-F-F-F-F-F

0.00 -155.05 8 7

152

Motif group HL_34964.1

Basepair signature:
cWW-F-F-F-F-F

0.00 -157.72 7 6

153

Motif group HL_86109.1

Basepair signature:
cWW-F-tWH-F-F-F-F-F-F-F

0.00 -163.47 9 8

154

Motif group HL_53504.3

Basepair signature:
cWW-tSH-F-F-F-F-F-F

0.00 -164.64 7 6

155

Motif group HL_07583.1

Basepair signature:
cWW-cWW-F-F-F-F-F-F-F-F

0.00 -165.45 9 7

156

Motif group HL_07886.3

Basepair signature:
cWW-F-F-F

0.00 -167.91 5 4

157

Motif group HL_30068.2

Basepair signature:
cWW-F-F-F-F

0.00 -171.60 4 3

158

Motif group HL_11542.1

Basepair signature:
cWW-tSH-F-F-F-F-F-F

0.00 -172.35 9 8

159

Motif group HL_87954.2

Basepair signature:
cWW-tSW-F

0.00 -173.37 4 3

160

Motif group HL_68767.1

Basepair signature:
cWW-cWS-tSH-cWS-F

0.00 -178.20 8 7

tRNA D-loop

161

Motif group HL_84847.1

Basepair signature:
cWW-F-F-F-F-tWW-F-F-F-F-F-F

0.00 -180.25 9 8

162

Motif group HL_81205.3

Basepair signature:
cWW-cWW-tWH-F-tWH-F-F-F-F-F

0.00 -186.29 9 8

163

Motif group HL_22584.6

Basepair signature:
cWW-tSW-F

0.00 -189.35 5 4

Fab BL3-6 binding hairpin with tSW

164

Motif group HL_49922.4

Basepair signature:
cWW-F-F-F

0.00 -190.08 4 3

165

Motif group HL_74055.2

Basepair signature:
cWW-tWH-cWH-tSH-tHW-tHW-tSW

0.00 -191.23 9 8

166

Motif group HL_15574.1

Basepair signature:
cWW-F-F-F-F-F

0.00 -196.30 6 4

167

Motif group HL_88205.2

Basepair signature:
cWW-cWS-tSW-F-F

0.00 -203.14 5 4

168

Motif group HL_73247.1

Basepair signature:
cWW-F-tWH-F-F-F-F-F-F-F-F-F-F

0.00 -206.13 9 8

Pseudoknot geometry

169

Motif group HL_02581.1

Basepair signature:
cWW-tSH-cWS-tSW-F-F-F

0.00 -207.28 9 9

tRNA D-loop

170

Motif group HL_37824.7

Basepair signature:
cWW-F-F-F-F

0.00 -210.37 3 3

GNRA

171

Motif group HL_13971.1

Basepair signature:
cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F

0.00 -215.11 8 7

172

Motif group HL_98870.1

Basepair signature:
cWW-tSH-tWW-F-F-F-F-F

0.00 -229.31 10 9

173

Motif group HL_91641.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F-cSW-F-F-F-F

0.00 -241.80 11 10

174

Motif group HL_14757.1

Basepair signature:
cWW-cWW-F-F-tSW-tWW-cWW-tHW-tSW-F-cWH-F

0.00 -290.26 12 11

175

Motif group HL_51921.1

Basepair signature:
cWW-tSH-tSS-tHS-F-F-F-F-F-F-F-F-F-F-F

0.00 -325.48 14 14

176

Motif group HL_97756.2

Basepair signature:
cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F

0.00 -362.35 9 8

177

Motif group HL_92488.1

Basepair signature:
cWW-cWW-F-cSS-F-F-F-F-F-F

0.00 -374.31 11 10

178

Motif group HL_08510.1

Basepair signature:
cWW-F-F-cSH-F-F

0.00 -456.98 6 5

179

Motif group HL_55436.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F

0.00 -494.65 6 5

180

Motif group HL_38649.1

Basepair signature:
cWW-tSH-F-F-F-F-F-F

0.00 -514.90 6 6

181

Motif group HL_67667.2

Basepair signature:
cWW-F-F

0.00 -748.78 5 4

182

Motif group HL_38168.1

Basepair signature:
cWW-F

0.00 -823.84 5 4

183

Motif group HL_69752.2

Basepair signature:
cWW-F

0.00 -849.88 5 4

184

Motif group HL_46501.1

Basepair signature:
cWW-cWS

0.00 -852.12 5 4

185

Motif group HL_89199.2

Basepair signature:
cWW-F-F-F

0.00 -976.17 5 4

Mini UNCG

186

Motif group HL_80709.3

Basepair signature:
cWW-F-F-F

0.00 -1095.22 5 3

187

Motif group HL_86883.1

Basepair signature:
cWW-F-F-F

0.00 -1108.28 5 4

188

Motif group HL_42998.2

Basepair signature:
cWW-F-F-F-F-F-F

0.00 -1145.37 5 4

189

Motif group HL_10456.1

Basepair signature:
cWW-F-cWW-tWW-F-tHW-F-F-F-F-F-F-F

0.00 -1344.63 13 12

190

Motif group HL_66482.1

Basepair signature:
cWW-cWW-tWW-F-F-tWH-F-F-F-F-F-F-F-F

0.00 -1350.99 12 11

191

Motif group HL_33074.4

Basepair signature:
cWW-F-F-F-F-F-F-F-F

0.00 -1450.70 7 6

U1 small nuclear ribonucleoprotein A binding hairpin

192

Motif group HL_20751.2

Basepair signature:
cWW-tHW-F-F-F-F-F-F-F-F-F

0.00 -1524.31 9 8

193

Motif group HL_89346.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F

0.00 -1530.71 13 12

194

Motif group HL_23115.1

Basepair signature:
cWW-F-F-F-F-F

0.00 -1558.13 7 6

tRNA D-loop

195

Motif group HL_80599.2

Basepair signature:
cWW-F-F-F-F-F-F-F

0.00 -1622.30 5 4

196

Motif group HL_80411.1

Basepair signature:
cWW-F-cSH-F-F-F-F

0.00 -1623.93 7 6

tRNA D-loop

197

Motif group HL_88558.1

Basepair signature:
cWW-tSH-F-F-F-F-F-F-F

0.00 -1642.82 7 6

198

Motif group HL_29762.1

Basepair signature:
cWW-F-F-F-F-F

0.00 -1648.57 7 6

199

Motif group HL_93135.1

Basepair signature:
cWW-F-F-F-F-F-F

0.00 -1724.31 6 6

Pseudoknot

200

Motif group HL_32735.2

Basepair signature:
cWW-tSH-F-F-F-F-F

0.00 -1742.94 5 4

201

Motif group HL_67407.5

Basepair signature:
cWW-F-F-F-F-F-F-F-F

0.00 -1800.81 6 5

202

Motif group HL_69139.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F

0.00 -1872.68 7 6

203

Motif group HL_73183.1

Basepair signature:
cWW-tSH-tHW-F-F-F-F-F-F-F-F-F

0.00 -1885.69 10 10

Pseudoknot geometry with G-bulge

204

Motif group HL_81312.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F-F

0.00 -1909.47 8 7

205

Motif group HL_19210.3

Basepair signature:
cWW-F-F-F-F-F-F-F-F

0.00 -1910.86 6 5

206

Motif group HL_93383.1

Basepair signature:
cWW-cSH-F-F-F-F-F-F

0.00 -1965.19 6 4

207

Motif group HL_55305.1

Basepair signature:
cWW-F-F-F-F-F

0.00 -1975.80 8 7

208

Motif group HL_16398.2

Basepair signature:
cWW-F-F-F-F-F-F

0.00 -2121.05 9 7

209

Motif group HL_47732.1

Basepair signature:
cWW-F-F-F-F-F-F

0.00 -2198.19 8 7

210

Motif group HL_64292.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F

0.00 -2286.45 10 9

211

Motif group HL_29958.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F

0.00 -2301.85 9 8

212

Motif group HL_22622.1

Basepair signature:
cWW-F-F-F-F-F

0.00 -2434.66 5 4

213

Motif group HL_22135.1

Basepair signature:
cWW-F-F

0.00 -2618.79 5 4

214

Motif group HL_20781.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F

0.00 -2620.65 8 7

215

Motif group HL_60914.1

Basepair signature:
cWW-F

0.00 -2660.04 5 5

216

Motif group HL_50851.1

Basepair signature:
cWW-cWH-cWH-cWH-cWH-F

0.00 -2686.91 8 7

G-quadruplex fragment

217

Motif group HL_26631.1

Basepair signature:
cWW-F-F-F

0.00 -2687.58 6 5

218

Motif group HL_85993.1

Basepair signature:
cWW-F-F-F-F-F

0.00 -2815.93 6 4

219

Motif group HL_51447.1

Basepair signature:
cWW-F-F-F-F-F

0.00 -2854.31 5 4

220

Motif group HL_50779.4

Basepair signature:
cWW-F-F-F-F-F-F-F

0.00 -2856.03 6 4

221

Motif group HL_04725.1

Basepair signature:
cWW-cWS-cWW-cWW-cWS

0.00 -2877.94 8 7

222

Motif group HL_31581.6

Basepair signature:
cWW-cHS-F-F-F-cWW-F-F-F

0.00 -3001.40 7 6

223

Motif group HL_07903.1

Basepair signature:
cWW-cWW-F-F-F-F-F-F-F-F-F

0.00 -3022.53 9 8

224

Motif group HL_97983.1

Basepair signature:
cWW-F-F

0.00 -3031.39 7 5

225

Motif group HL_63355.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F-F-F-F

0.00 -3058.83 10 8

226

Motif group HL_74292.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F

0.00 -3153.65 7 6

227

Motif group HL_15118.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F-F

0.00 -3207.20 7 6

228

Motif group HL_94376.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F-F

0.00 -3247.80 6 5

Pseudoknot geometry

229

Motif group HL_58539.1

Basepair signature:
cWW-tWS-F-tHW-F-F-F-F-F-F-F-F

0.00 -3273.91 11 10

230

Motif group HL_99867.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F

0.00 -3481.40 6 4

231

Motif group HL_24792.1

Basepair signature:
cWW-cWS-F-F-F

0.00 -3493.42 6 5

232

Motif group HL_59735.5

Basepair signature:
cWW-F-F-F-F-F

0.00 -3727.68 5 4

233

Motif group HL_99324.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F

0.00 -3751.14 12 11

234

Motif group HL_00317.1

Basepair signature:
cWW-F-cSS-F-F-F-F-F-F-F-F-F-F-F-F-F-F

0.00 -3800.69 15 14

235

Motif group HL_59564.1

Basepair signature:
cWW-F-cSS-F-cSS-F-F-F-F-F-F-F-F-F-F-F-F

0.00 -3824.61 15 14

236

Motif group HL_85461.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F-F-F-F-F-F

0.00 -4008.23 14 13

237

Motif group HL_60293.1

Basepair signature:
cWW-cWH-F-cWH-cHW-cHW-cWH-cHW-cWH-F-cWH-cWH-cWH-F

0.00 -4054.80 17 16

G-quadruplex

238

Motif group HL_21400.1

Basepair signature:
cWW-tWH-tSW-cWW-cWH-cHW-cWH-cWH-cHW-cWH-cHW-cWH-cWH-cWH-cWH-cWH

0.00 -4057.47 18 17

G-quadruplex

239

Motif group HL_35354.1

Basepair signature:
cWW-cWH-cHW-F-cWH-cHW-F-F-tHH-cWH-tWW-cWH-F-tWW-cWH-F-cWH

0.00 -4065.95 18 18

240

Motif group HL_12758.3

Basepair signature:
cWW-tSH-F-cHW-F-F-cWH-cHW-cWH-cHW-cWH-cWH-F-tSH-F-cHW-F-cWH-cWH

0.00 -4084.42 19 19

G-quadruplex

241

Motif group HL_80241.1

Basepair signature:
cWW-F-F-F-F-F-F-F

0.00 -4149.11 6 4

242

Motif group HL_70751.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F-F

0.00 -4156.62 7 6

243

Motif group HL_36684.4

Basepair signature:
cWW-F-F-F-F-F-F-F-F-F

0.00 -4262.55 6 5

244

Motif group HL_50418.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F-F

0.00 -4354.80 7 5

245

Motif group HL_78284.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F-F-F

0.00 -4414.45 7 7

246

Motif group HL_94980.1

Basepair signature:
cWW-F-F

0.00 -4437.15 6 5

247

Motif group HL_88364.2

Basepair signature:
cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

0.00 -4603.36 10 10

248

Motif group HL_73916.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F

0.00 -4609.99 32 32

249

Motif group HL_12870.1

Basepair signature:
cWW-tHW-F-F-F-F-F-F-F-F-F

0.00 -5136.15 9 8

250

Motif group HL_68572.1

Basepair signature:
cWW-F-F-F-F-F-F-F

0.00 -5417.73 8 7

251

Motif group HL_76094.1

Basepair signature:
cWW-cWS-F-F

0.00 -7089.61 5 5

252

Motif group HL_07951.3

Basepair signature:
cWW-F-F

0.00 -9999.00 6 4

tRNA D-loop

253

Motif group HL_09260.2

Basepair signature:
cWW-F-F-F-F

0.00 -9999.00 6 6

tRNA D-loop

Coloring options: