JAR3D
Query RF00168-CCF-3.98 completed
Run on Motif Atlas Version
using the Rfam secondary structure. Run with the CaCoFold secondary structure.
Loop 10 Hairpin loop
Column numbers: 120-128 - View nucleotides in PDB file(s)
Scored sequences and counts
---GUCA-- 6
GCUGGCC-A 3
---AUCA-- 3
CU-CUUU-G 2
UC-CAUA-A 2
U--AGCA-G 2
UUCCUUAAG 1
AAUCUCA-U 1
AUACUUU-A 1
UCCUUAA-A 1
UCUGGUC-A 1
AC-CAUC-U 1
AGUGACC-- 1
CCCAUCG-- 1
GCCGAUC-- 1
UC-CACU-C 1
UU-CUUU-G 1
UU-GACC-G 1
---CUCAUU 1
C--CUUA-A 1
CC-AUAA-- 1
CC-AUUC-- 1
CU-CAUA-- 1
CU-CAUU-- 1
G--UUCU-U 1
U--CGCA-G 1
UC-GGCC-- 1
UG-CGGC-- 1
UU-CGGC-- 1
---AGCA-G 1
---GCUC-A 1
---AUCG-- 1
---AUCU-- 1
---GCUC-- 1
---GUCG-- 1
Click on headings to reorder table
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group HL_70782.2
Basepair signature:
|
42.55 | -18.87 | 3 | 2 |
|
| 2 |
Motif group HL_48417.5
Basepair signature:
|
29.79 | -35.69 | 3 | 2 |
|
| 3 |
Motif group HL_13189.1
Basepair signature:
|
29.79 | -41.28 | 3 | 3 |
|
| 4 |
Motif group HL_48778.2
Basepair signature:
|
27.66 | -72.50 | 2 | 2 |
Mini UNCG |
| 5 |
Motif group HL_56131.2
Basepair signature:
|
25.53 | -25.06 | 3 | 2 |
|
| 6 |
Motif group HL_78677.1
Basepair signature:
|
25.53 | -92.23 | 3 | 3 |
|
| 7 |
Motif group HL_53890.2
Basepair signature:
|
23.40 | -50.45 | 3 | 2 |
|
| 8 |
Motif group HL_66103.1
Basepair signature:
|
14.89 | -79.44 | 4 | 3 |
|
| 9 |
Motif group HL_50318.1
Basepair signature:
|
12.77 | -80.32 | 5 | 4 |
|
| 10 |
Motif group HL_78347.4
Basepair signature:
|
10.64 | -57.45 | 4 | 3 |
|
| 11 |
Motif group HL_86870.2
Basepair signature:
|
10.64 | -90.20 | 3 | 3 |
|
| 12 |
Motif group HL_28075.1
Basepair signature:
|
10.64 | -135.50 | 5 | 4 |
|
| 13 |
Motif group HL_99748.1
Basepair signature:
|
8.51 | -68.66 | 5 | 3 |
Other HL |
| 14 |
Motif group HL_93535.1
Basepair signature:
|
8.51 | -70.05 | 4 | 3 |
|
| 15 |
Motif group HL_50537.6
Basepair signature:
|
8.51 | -71.75 | 5 | 3 |
tRNA anticodon loop with synthetase |
| 16 |
Motif group HL_75660.5
Basepair signature:
|
8.51 | -74.86 | 2 | 2 |
|
| 17 |
Motif group HL_86769.4
Basepair signature:
|
8.51 | -76.73 | 4 | 3 |
|
| 18 |
Motif group HL_62934.1
Basepair signature:
|
8.51 | -79.84 | 4 | 3 |
|
| 19 |
Motif group HL_59843.1
Basepair signature:
|
8.51 | -99.24 | 4 | 3 |
|
| 20 |
Motif group HL_87553.1
Basepair signature:
|
8.51 | -113.28 | 4 | 3 |
|
| 21 |
Motif group HL_65794.5
Basepair signature:
|
8.51 | -515.35 | 3 | 2 |
Pseudoknot geometry |
| 22 |
Motif group HL_10453.3
Basepair signature:
|
8.51 | -2551.09 | 4 | 3 |
tRNA anticodon loop |
| 23 |
Motif group HL_22622.1
Basepair signature:
|
8.51 | -2802.86 | 5 | 4 |
|
| 24 |
Motif group HL_56334.1
Basepair signature:
|
6.38 | -70.86 | 3 | 2 |
Mini UNCG |
| 25 |
Motif group HL_32346.4
Basepair signature:
|
6.38 | -97.97 | 3 | 3 |
|
| 26 |
Motif group HL_99040.1
Basepair signature:
|
6.38 | -465.67 | 5 | 3 |
|
| 27 |
Motif group HL_25967.2
Basepair signature:
|
6.38 | -2318.18 | 4 | 3 |
|
| 28 |
Motif group HL_02817.2
Basepair signature:
|
6.38 | -2430.28 | 5 | 4 |
|
| 29 |
Motif group HL_57176.2
Basepair signature:
|
6.38 | -2961.70 | 3 | 2 |
Pseudoknot geometry with 3' bulge |
| 30 |
Motif group HL_65313.1
Basepair signature:
|
6.38 | -2976.94 | 4 | 3 |
|
| 31 |
Motif group HL_50006.2
Basepair signature:
|
4.26 | -64.99 | 4 | 3 |
|
| 32 |
Motif group HL_13963.3
Basepair signature:
|
4.26 | -69.19 | 4 | 3 |
|
| 33 |
Motif group HL_37344.1
Basepair signature:
|
4.26 | -81.52 | 5 | 3 |
|
| 34 |
Motif group HL_80922.2
Basepair signature:
|
4.26 | -93.55 | 4 | 3 |
|
| 35 |
Motif group HL_08100.1
Basepair signature:
|
4.26 | -102.23 | 4 | 3 |
|
| 36 |
Motif group HL_35941.1
Basepair signature:
|
4.26 | -102.32 | 3 | 3 |
|
| 37 |
Motif group HL_20811.4
Basepair signature:
|
4.26 | -116.18 | 4 | 3 |
tRNA D-loop |
| 38 |
Motif group HL_49922.4
Basepair signature:
|
4.26 | -118.52 | 3 | 3 |
|
| 39 |
Motif group HL_52953.3
Basepair signature:
|
4.26 | -563.91 | 4 | 3 |
|
| 40 |
Motif group HL_33983.1
Basepair signature:
|
4.26 | -1961.26 | 6 | 4 |
|
| 41 |
Motif group HL_80709.3
Basepair signature:
|
4.26 | -2991.54 | 3 | 2 |
|
| 42 |
Motif group HL_67667.2
Basepair signature:
|
4.26 | -3107.95 | 4 | 3 |
|
| 43 |
Motif group HL_81100.2
Basepair signature:
|
4.26 | -3167.41 | 4 | 3 |
|
| 44 |
Motif group HL_04783.2
Basepair signature:
|
2.13 | -70.95 | 4 | 3 |
|
| 45 |
Motif group HL_57875.1
Basepair signature:
|
2.13 | -81.25 | 4 | 2 |
|
| 46 |
Motif group HL_86012.1
Basepair signature:
|
2.13 | -83.74 | 5 | 4 |
T-loop with unstacked turn |
| 47 |
Motif group HL_20535.2
Basepair signature:
|
2.13 | -89.13 | 5 | 4 |
|
| 48 |
Motif group HL_89893.1
Basepair signature:
|
2.13 | -89.66 | 5 | 4 |
|
| 49 |
Motif group HL_69752.2
Basepair signature:
|
2.13 | -90.77 | 4 | 3 |
|
| 50 |
Motif group HL_27483.1
Basepair signature:
|
2.13 | -91.06 | 4 | 3 |
|
| 51 |
Motif group HL_43517.1
Basepair signature:
|
2.13 | -95.70 | 4 | 3 |
|
| 52 |
Motif group HL_56676.1
Basepair signature:
|
2.13 | -97.37 | 4 | 3 |
|
| 53 |
Motif group HL_83808.4
Basepair signature:
|
2.13 | -97.82 | 6 | 4 |
Pseudoknot |
| 54 |
Motif group HL_32392.1
Basepair signature:
|
2.13 | -101.86 | 4 | 3 |
|
| 55 |
Motif group HL_13529.1
Basepair signature:
|
2.13 | -103.70 | 5 | 4 |
|
| 56 |
Motif group HL_55195.3
Basepair signature:
|
2.13 | -106.59 | 4 | 3 |
|
| 57 |
Motif group HL_34617.5
Basepair signature:
|
2.13 | -107.21 | 3 | 2 |
UNCG |
| 58 |
Motif group HL_22135.1
Basepair signature:
|
2.13 | -117.96 | 4 | 3 |
|
| 59 |
Motif group HL_77082.1
Basepair signature:
|
2.13 | -118.10 | 4 | 3 |
Pseudoknot geometry |
| 60 |
Motif group HL_73266.9
Basepair signature:
|
2.13 | -136.55 | 5 | 4 |
|
| 61 |
Motif group HL_21372.1
Basepair signature:
|
2.13 | -153.24 | 5 | 4 |
|
| 62 |
Motif group HL_94980.1
Basepair signature:
|
2.13 | -392.62 | 4 | 4 |
|
| 63 |
Motif group HL_39243.1
Basepair signature:
|
2.13 | -570.67 | 5 | 4 |
|
| 64 |
Motif group HL_15802.1
Basepair signature:
|
2.13 | -1804.98 | 6 | 4 |
|
| 65 |
Motif group HL_97733.1
Basepair signature:
|
2.13 | -1998.00 | 6 | 5 |
|
| 66 |
Motif group HL_83632.1
Basepair signature:
|
2.13 | -2333.35 | 5 | 4 |
tRNA anticodon loop |
| 67 |
Motif group HL_07951.3
Basepair signature:
|
2.13 | -9999.00 | 6 | 5 |
tRNA D-loop |
| 68 |
Motif group HL_26934.1
Basepair signature:
|
0.00 | -68.42 | 5 | 3 |
|
| 69 |
Motif group HL_38168.1
Basepair signature:
|
0.00 | -77.59 | 4 | 3 |
|
| 70 |
Motif group HL_46501.1
Basepair signature:
|
0.00 | -85.32 | 3 | 3 |
|
| 71 |
Motif group HL_97917.2
Basepair signature:
|
0.00 | -93.71 | 5 | 3 |
|
| 72 |
Motif group HL_38901.2
Basepair signature:
|
0.00 | -96.87 | 3 | 2 |
tRNA D-loop |
| 73 |
Motif group HL_18565.1
Basepair signature:
|
0.00 | -102.71 | 5 | 4 |
|
| 74 |
Motif group HL_71391.1
Basepair signature:
|
0.00 | -104.09 | 4 | 3 |
|
| 75 |
Motif group HL_82710.2
Basepair signature:
|
0.00 | -104.15 | 4 | 3 |
|
| 76 |
Motif group HL_98864.1
Basepair signature:
|
0.00 | -104.72 | 6 | 5 |
T-loop with unstacked turn |
| 77 |
Motif group HL_20167.2
Basepair signature:
|
0.00 | -106.22 | 5 | 4 |
|
| 78 |
Motif group HL_66853.7
Basepair signature:
|
0.00 | -107.31 | 6 | 4 |
|
| 79 |
Motif group HL_87954.2
Basepair signature:
|
0.00 | -111.13 | 4 | 3 |
|
| 80 |
Motif group HL_50860.2
Basepair signature:
|
0.00 | -111.51 | 5 | 4 |
|
| 81 |
Motif group HL_04642.1
Basepair signature:
|
0.00 | -112.22 | 6 | 5 |
tRNA D-loop |
| 82 |
Motif group HL_02887.3
Basepair signature:
|
0.00 | -113.11 | 6 | 5 |
T-loop with 3 stacked bulged bases |
| 83 |
Motif group HL_57863.1
Basepair signature:
|
0.00 | -114.05 | 7 | 6 |
G-quadruplex fragment |
| 84 |
Motif group HL_47787.2
Basepair signature:
|
0.00 | -114.51 | 3 | 2 |
|
| 85 |
Motif group HL_22584.6
Basepair signature:
|
0.00 | -117.89 | 4 | 3 |
Fab BL3-6 binding hairpin with tSW |
| 86 |
Motif group HL_93438.2
Basepair signature:
|
0.00 | -118.39 | 6 | 5 |
|
| 87 |
Motif group HL_89567.2
Basepair signature:
|
0.00 | -120.46 | 5 | 3 |
|
| 88 |
Motif group HL_20743.5
Basepair signature:
|
0.00 | -121.15 | 6 | 4 |
|
| 89 |
Motif group HL_37824.7
Basepair signature:
|
0.00 | -124.08 | 3 | 2 |
GNRA |
| 90 |
Motif group HL_30068.2
Basepair signature:
|
0.00 | -124.09 | 4 | 3 |
|
| 91 |
Motif group HL_64690.6
Basepair signature:
|
0.00 | -125.54 | 5 | 4 |
|
| 92 |
Motif group HL_07886.3
Basepair signature:
|
0.00 | -126.81 | 4 | 3 |
|
| 93 |
Motif group HL_68257.1
Basepair signature:
|
0.00 | -129.02 | 7 | 6 |
|
| 94 |
Motif group HL_47854.1
Basepair signature:
|
0.00 | -130.02 | 6 | 5 |
|
| 95 |
Motif group HL_42046.2
Basepair signature:
|
0.00 | -130.72 | 5 | 3 |
|
| 96 |
Motif group HL_61996.2
Basepair signature:
|
0.00 | -136.76 | 5 | 4 |
|
| 97 |
Motif group HL_45175.1
Basepair signature:
|
0.00 | -138.81 | 6 | 4 |
tRNA D-loop |
| 98 |
Motif group HL_60914.1
Basepair signature:
|
0.00 | -139.94 | 4 | 3 |
|
| 99 |
Motif group HL_10540.1
Basepair signature:
|
0.00 | -140.84 | 5 | 4 |
|
| 100 |
Motif group HL_01609.3
Basepair signature:
|
0.00 | -149.11 | 5 | 3 |
T-loop with 2 bulged bases not stacked |
| 101 |
Motif group HL_67079.1
Basepair signature:
|
0.00 | -149.70 | 7 | 5 |
|
| 102 |
Motif group HL_84299.4
Basepair signature:
|
0.00 | -150.20 | 5 | 4 |
|
| 103 |
Motif group HL_41543.1
Basepair signature:
|
0.00 | -152.11 | 7 | 6 |
|
| 104 |
Motif group HL_81545.2
Basepair signature:
|
0.00 | -152.25 | 6 | 6 |
|
| 105 |
Motif group HL_41464.2
Basepair signature:
|
0.00 | -152.39 | 6 | 5 |
|
| 106 |
Motif group HL_04259.3
Basepair signature:
|
0.00 | -157.95 | 5 | 3 |
GNRA with extra cWW |
| 107 |
Motif group HL_98252.1
Basepair signature:
|
0.00 | -161.41 | 8 | 7 |
|
| 108 |
Motif group HL_28252.8
Basepair signature:
|
0.00 | -161.78 | 5 | 4 |
T-loop with 2 stacked bulged bases |
| 109 |
Motif group HL_49941.1
Basepair signature:
|
0.00 | -161.80 | 7 | 5 |
tRNA D-loop |
| 110 |
Motif group HL_75293.5
Basepair signature:
|
0.00 | -163.63 | 6 | 5 |
|
| 111 |
Motif group HL_74379.3
Basepair signature:
|
0.00 | -164.62 | 9 | 7 |
|
| 112 |
Motif group HL_81538.2
Basepair signature:
|
0.00 | -165.10 | 4 | 3 |
GNRA with tandem sheared |
| 113 |
Motif group HL_18423.1
Basepair signature:
|
0.00 | -165.50 | 7 | 6 |
|
| 114 |
Motif group HL_25847.2
Basepair signature:
|
0.00 | -169.41 | 7 | 6 |
|
| 115 |
Motif group HL_77436.5
Basepair signature:
|
0.00 | -171.72 | 4 | 3 |
T-loop related |
| 116 |
Motif group HL_90620.1
Basepair signature:
|
0.00 | -171.88 | 8 | 6 |
|
| 117 |
Motif group HL_23509.1
Basepair signature:
|
0.00 | -172.75 | 8 | 7 |
|
| 118 |
Motif group HL_01962.2
Basepair signature:
|
0.00 | -176.61 | 7 | 5 |
|
| 119 |
Motif group HL_41902.1
Basepair signature:
|
0.00 | -181.07 | 9 | 8 |
|
| 120 |
Motif group HL_36335.1
Basepair signature:
|
0.00 | -181.98 | 8 | 6 |
|
| 121 |
Motif group HL_16991.1
Basepair signature:
|
0.00 | -182.78 | 9 | 8 |
G-quadruplex fragment |
| 122 |
Motif group HL_04171.7
Basepair signature:
|
0.00 | -190.69 | 7 | 6 |
|
| 123 |
Motif group HL_73255.1
Basepair signature:
|
0.00 | -192.09 | 6 | 5 |
|
| 124 |
Motif group HL_70658.1
Basepair signature:
|
0.00 | -192.45 | 8 | 7 |
|
| 125 |
Motif group HL_40252.4
Basepair signature:
|
0.00 | -203.89 | 7 | 6 |
|
| 126 |
Motif group HL_08602.1
Basepair signature:
|
0.00 | -209.18 | 8 | 7 |
|
| 127 |
Motif group HL_60266.1
Basepair signature:
|
0.00 | -209.41 | 8 | 7 |
|
| 128 |
Motif group HL_86109.1
Basepair signature:
|
0.00 | -214.48 | 9 | 8 |
|
| 129 |
Motif group HL_53504.3
Basepair signature:
|
0.00 | -217.20 | 7 | 6 |
|
| 130 |
Motif group HL_07583.1
Basepair signature:
|
0.00 | -224.93 | 9 | 8 |
|
| 131 |
Motif group HL_74055.2
Basepair signature:
|
0.00 | -229.36 | 9 | 9 |
|
| 132 |
Motif group HL_81205.3
Basepair signature:
|
0.00 | -231.09 | 10 | 8 |
|
| 133 |
Motif group HL_84847.1
Basepair signature:
|
0.00 | -231.25 | 10 | 8 |
|
| 134 |
Motif group HL_68767.1
Basepair signature:
|
0.00 | -237.10 | 9 | 8 |
tRNA D-loop |
| 135 |
Motif group HL_13971.1
Basepair signature:
|
0.00 | -251.68 | 9 | 8 |
|
| 136 |
Motif group HL_73247.1
Basepair signature:
|
0.00 | -261.47 | 10 | 9 |
Pseudoknot geometry |
| 137 |
Motif group HL_98870.1
Basepair signature:
|
0.00 | -288.27 | 11 | 10 |
|
| 138 |
Motif group HL_91641.1
Basepair signature:
|
0.00 | -300.34 | 12 | 11 |
|
| 139 |
Motif group HL_14757.1
Basepair signature:
|
0.00 | -300.56 | 12 | 11 |
|
| 140 |
Motif group HL_88205.2
Basepair signature:
|
0.00 | -319.02 | 6 | 4 |
|
| 141 |
Motif group HL_85434.1
Basepair signature:
|
0.00 | -344.01 | 7 | 5 |
|
| 142 |
Motif group HL_93616.2
Basepair signature:
|
0.00 | -373.28 | 7 | 6 |
tRNA D-loop |
| 143 |
Motif group HL_51921.1
Basepair signature:
|
0.00 | -374.21 | 16 | 15 |
|
| 144 |
Motif group HL_29129.3
Basepair signature:
|
0.00 | -408.18 | 7 | 6 |
|
| 145 |
Motif group HL_97756.2
Basepair signature:
|
0.00 | -415.32 | 10 | 9 |
|
| 146 |
Motif group HL_80008.1
Basepair signature:
|
0.00 | -441.01 | 6 | 4 |
|
| 147 |
Motif group HL_72628.1
Basepair signature:
|
0.00 | -448.43 | 6 | 4 |
|
| 148 |
Motif group HL_92488.1
Basepair signature:
|
0.00 | -462.02 | 11 | 11 |
|
| 149 |
Motif group HL_28791.1
Basepair signature:
|
0.00 | -573.67 | 5 | 3 |
|
| 150 |
Motif group HL_89881.5
Basepair signature:
|
0.00 | -1494.07 | 7 | 5 |
|
| 151 |
Motif group HL_02483.1
Basepair signature:
|
0.00 | -1521.75 | 8 | 7 |
|
| 152 |
Motif group HL_45785.1
Basepair signature:
|
0.00 | -1525.66 | 7 | 6 |
|
| 153 |
Motif group HL_02581.1
Basepair signature:
|
0.00 | -1564.47 | 10 | 9 |
tRNA D-loop |
| 154 |
Motif group HL_18978.1
Basepair signature:
|
0.00 | -1579.66 | 6 | 5 |
|
| 155 |
Motif group HL_05304.3
Basepair signature:
|
0.00 | -1598.53 | 9 | 7 |
|
| 156 |
Motif group HL_91939.2
Basepair signature:
|
0.00 | -1610.67 | 8 | 6 |
|
| 157 |
Motif group HL_06226.4
Basepair signature:
|
0.00 | -1616.57 | 7 | 6 |
|
| 158 |
Motif group HL_87463.1
Basepair signature:
|
0.00 | -1628.69 | 7 | 6 |
|
| 159 |
Motif group HL_07480.2
Basepair signature:
|
0.00 | -1682.65 | 8 | 6 |
|
| 160 |
Motif group HL_58224.1
Basepair signature:
|
0.00 | -1698.00 | 6 | 5 |
|
| 161 |
Motif group HL_23010.1
Basepair signature:
|
0.00 | -1759.66 | 7 | 6 |
|
| 162 |
Motif group HL_04641.1
Basepair signature:
|
0.00 | -1782.64 | 7 | 5 |
|
| 163 |
Motif group HL_99769.3
Basepair signature:
|
0.00 | -1831.10 | 7 | 6 |
|
| 164 |
Motif group HL_11542.1
Basepair signature:
|
0.00 | -1933.95 | 9 | 8 |
|
| 165 |
Motif group HL_53454.2
Basepair signature:
|
0.00 | -2017.80 | 6 | 5 |
|
| 166 |
Motif group HL_76094.1
Basepair signature:
|
0.00 | -2046.02 | 4 | 4 |
|
| 167 |
Motif group HL_34964.1
Basepair signature:
|
0.00 | -2069.38 | 8 | 6 |
|
| 168 |
Motif group HL_25061.1
Basepair signature:
|
0.00 | -2101.51 | 6 | 5 |
|
| 169 |
Motif group HL_37369.2
Basepair signature:
|
0.00 | -2189.25 | 4 | 3 |
|
| 170 |
Motif group HL_38046.1
Basepair signature:
|
0.00 | -2228.05 | 6 | 4 |
|
| 171 |
Motif group HL_06059.6
Basepair signature:
|
0.00 | -2234.80 | 4 | 3 |
tRNA anticodon loop |
| 172 |
Motif group HL_85367.2
Basepair signature:
|
0.00 | -2272.93 | 5 | 4 |
|
| 173 |
Motif group HL_27670.2
Basepair signature:
|
0.00 | -2295.80 | 5 | 4 |
T-loop with unstacked turn |
| 174 |
Motif group HL_38808.1
Basepair signature:
|
0.00 | -2527.59 | 5 | 4 |
|
| 175 |
Motif group HL_00914.1
Basepair signature:
|
0.00 | -2538.64 | 5 | 4 |
|
| 176 |
Motif group HL_66482.1
Basepair signature:
|
0.00 | -2616.45 | 12 | 12 |
|
| 177 |
Motif group HL_10456.1
Basepair signature:
|
0.00 | -2616.83 | 13 | 12 |
|
| 178 |
Motif group HL_93383.1
Basepair signature:
|
0.00 | -2619.52 | 5 | 4 |
|
| 179 |
Motif group HL_89199.2
Basepair signature:
|
0.00 | -2647.42 | 4 | 3 |
Mini UNCG |
| 180 |
Motif group HL_31585.4
Basepair signature:
|
0.00 | -2985.98 | 4 | 3 |
Purine riboswitch |
| 181 |
Motif group HL_29966.1
Basepair signature:
|
0.00 | -3002.11 | 5 | 3 |
|
| 182 |
Motif group HL_15574.1
Basepair signature:
|
0.00 | -3017.36 | 5 | 4 |
|
| 183 |
Motif group HL_86883.1
Basepair signature:
|
0.00 | -3020.61 | 4 | 4 |
|
| 184 |
Motif group HL_26631.1
Basepair signature:
|
0.00 | -3055.70 | 4 | 4 |
|
| 185 |
Motif group HL_20751.2
Basepair signature:
|
0.00 | -3113.06 | 10 | 8 |
|
| 186 |
Motif group HL_80599.2
Basepair signature:
|
0.00 | -3177.89 | 5 | 4 |
|
| 187 |
Motif group HL_78197.1
Basepair signature:
|
0.00 | -3247.49 | 4 | 2 |
|
| 188 |
Motif group HL_23115.1
Basepair signature:
|
0.00 | -3261.11 | 7 | 6 |
tRNA D-loop |
| 189 |
Motif group HL_08510.1
Basepair signature:
|
0.00 | -3283.40 | 6 | 4 |
|
| 190 |
Motif group HL_33074.4
Basepair signature:
|
0.00 | -3355.82 | 8 | 6 |
U1 small nuclear ribonucleoprotein A binding hairpin |
| 191 |
Motif group HL_32735.2
Basepair signature:
|
0.00 | -3391.75 | 5 | 4 |
|
| 192 |
Motif group HL_38649.1
Basepair signature:
|
0.00 | -3399.87 | 7 | 6 |
|
| 193 |
Motif group HL_91503.7
Basepair signature:
|
0.00 | -3403.38 | 7 | 6 |
|
| 194 |
Motif group HL_80411.1
Basepair signature:
|
0.00 | -3420.55 | 7 | 6 |
tRNA D-loop |
| 195 |
Motif group HL_88558.1
Basepair signature:
|
0.00 | -3430.21 | 8 | 7 |
|
| 196 |
Motif group HL_93324.4
Basepair signature:
|
0.00 | -3441.10 | 4 | 3 |
Pseudoknot geometry |
| 197 |
Motif group HL_89346.1
Basepair signature:
|
0.00 | -3446.56 | 14 | 13 |
|
| 198 |
Motif group HL_29762.1
Basepair signature:
|
0.00 | -3464.31 | 8 | 6 |
|
| 199 |
Motif group HL_59330.1
Basepair signature:
|
0.00 | -3501.96 | 5 | 4 |
|
| 200 |
Motif group HL_55436.1
Basepair signature:
|
0.00 | -3517.14 | 6 | 5 |
|
| 201 |
Motif group HL_93135.1
Basepair signature:
|
0.00 | -3627.79 | 7 | 6 |
Pseudoknot |
| 202 |
Motif group HL_69139.1
Basepair signature:
|
0.00 | -3955.99 | 7 | 6 |
|
| 203 |
Motif group HL_50779.4
Basepair signature:
|
0.00 | -3987.73 | 6 | 5 |
|
| 204 |
Motif group HL_99324.1
Basepair signature:
|
0.00 | -4021.00 | 12 | 11 |
|
| 205 |
Motif group HL_85461.1
Basepair signature:
|
0.00 | -4021.98 | 14 | 14 |
|
| 206 |
Motif group HL_12870.1
Basepair signature:
|
0.00 | -4048.15 | 9 | 8 |
|
| 207 |
Motif group HL_35677.3
Basepair signature:
|
0.00 | -4060.15 | 6 | 4 |
|
| 208 |
Motif group HL_60293.1
Basepair signature:
|
0.00 | -4061.77 | 18 | 17 |
G-quadruplex |
| 209 |
Motif group HL_00317.1
Basepair signature:
|
0.00 | -4067.97 | 16 | 14 |
|
| 210 |
Motif group HL_21400.1
Basepair signature:
|
0.00 | -4071.28 | 19 | 18 |
G-quadruplex |
| 211 |
Motif group HL_35354.1
Basepair signature:
|
0.00 | -4081.54 | 20 | 19 |
|
| 212 |
Motif group HL_59564.1
Basepair signature:
|
0.00 | -4103.38 | 16 | 14 |
|
| 213 |
Motif group HL_12758.3
Basepair signature:
|
0.00 | -4106.29 | 21 | 19 |
G-quadruplex |
| 214 |
Motif group HL_24792.1
Basepair signature:
|
0.00 | -4200.26 | 6 | 5 |
|
| 215 |
Motif group HL_73183.1
Basepair signature:
|
0.00 | -4283.26 | 11 | 10 |
Pseudoknot geometry with G-bulge |
| 216 |
Motif group HL_67407.5
Basepair signature:
|
0.00 | -4283.30 | 7 | 5 |
|
| 217 |
Motif group HL_80362.1
Basepair signature:
|
0.00 | -4296.37 | 5 | 4 |
|
| 218 |
Motif group HL_50851.1
Basepair signature:
|
0.00 | -4348.11 | 9 | 7 |
G-quadruplex fragment |
| 219 |
Motif group HL_42998.2
Basepair signature:
|
0.00 | -4465.60 | 5 | 4 |
|
| 220 |
Motif group HL_81312.1
Basepair signature:
|
0.00 | -4495.85 | 8 | 7 |
|
| 221 |
Motif group HL_85993.1
Basepair signature:
|
0.00 | -4502.13 | 5 | 4 |
|
| 222 |
Motif group HL_19210.3
Basepair signature:
|
0.00 | -4507.85 | 6 | 5 |
|
| 223 |
Motif group HL_51447.1
Basepair signature:
|
0.00 | -4510.21 | 4 | 3 |
|
| 224 |
Motif group HL_55305.1
Basepair signature:
|
0.00 | -4632.19 | 8 | 7 |
|
| 225 |
Motif group HL_73916.1
Basepair signature:
|
0.00 | -4658.43 | 34 | 33 |
|
| 226 |
Motif group HL_04725.1
Basepair signature:
|
0.00 | -4667.35 | 8 | 7 |
|
| 227 |
Motif group HL_01255.1
Basepair signature:
|
0.00 | -4754.80 | 8 | 7 |
|
| 228 |
Motif group HL_07903.1
Basepair signature:
|
0.00 | -4871.04 | 10 | 9 |
|
| 229 |
Motif group HL_31581.6
Basepair signature:
|
0.00 | -4873.76 | 8 | 6 |
|
| 230 |
Motif group HL_63355.1
Basepair signature:
|
0.00 | -4930.38 | 10 | 9 |
|
| 231 |
Motif group HL_16398.2
Basepair signature:
|
0.00 | -4964.89 | 9 | 7 |
|
| 232 |
Motif group HL_88364.2
Basepair signature:
|
0.00 | -5045.17 | 11 | 10 |
|
| 233 |
Motif group HL_47732.1
Basepair signature:
|
0.00 | -5128.80 | 8 | 7 |
|
| 234 |
Motif group HL_09452.1
Basepair signature:
|
0.00 | -5163.39 | 5 | 4 |
|
| 235 |
Motif group HL_74292.1
Basepair signature:
|
0.00 | -5196.17 | 7 | 6 |
|
| 236 |
Motif group HL_64292.1
Basepair signature:
|
0.00 | -5215.04 | 11 | 10 |
|
| 237 |
Motif group HL_15118.1
Basepair signature:
|
0.00 | -5215.09 | 8 | 6 |
|
| 238 |
Motif group HL_94376.1
Basepair signature:
|
0.00 | -5285.73 | 7 | 5 |
Pseudoknot geometry |
| 239 |
Motif group HL_29958.1
Basepair signature:
|
0.00 | -5321.57 | 10 | 8 |
|
| 240 |
Motif group HL_70751.1
Basepair signature:
|
0.00 | -5435.49 | 7 | 6 |
|
| 241 |
Motif group HL_36684.4
Basepair signature:
|
0.00 | -5580.83 | 7 | 5 |
|
| 242 |
Motif group HL_50418.1
Basepair signature:
|
0.00 | -5700.98 | 7 | 5 |
|
| 243 |
Motif group HL_78284.1
Basepair signature:
|
0.00 | -5743.52 | 8 | 7 |
|
| 244 |
Motif group HL_99867.1
Basepair signature:
|
0.00 | -5749.31 | 6 | 4 |
|
| 245 |
Motif group HL_80241.1
Basepair signature:
|
0.00 | -5762.53 | 6 | 4 |
|
| 246 |
Motif group HL_30680.3
Basepair signature:
|
0.00 | -5834.74 | 4 | 3 |
Pseudoknot geometry |
| 247 |
Motif group HL_59735.5
Basepair signature:
|
0.00 | -5871.91 | 5 | 3 |
|
| 248 |
Motif group HL_68572.1
Basepair signature:
|
0.00 | -5926.42 | 9 | 8 |
|
| 249 |
Motif group HL_20781.1
Basepair signature:
|
0.00 | -6160.94 | 8 | 7 |
|
| 250 |
Motif group HL_58539.1
Basepair signature:
|
0.00 | -7078.39 | 12 | 10 |
|
| 251 |
Motif group HL_97983.1
Basepair signature:
|
0.00 | -7176.47 | 7 | 5 |
|
| 252 |
Motif group HL_77600.2
Basepair signature:
|
0.00 | -7810.67 | 5 | 4 |
|
| 253 |
Motif group HL_09260.2
Basepair signature:
|
0.00 | -9999.00 | 7 | 6 |
tRNA D-loop |