JAR3D
Query RF00168-CCF-3.98 completed
Run on Motif Atlas Version
using the Rfam secondary structure. Run with the CaCoFold secondary structure.
Loop 12 Hairpin loop
Column numbers: 157-165 - View nucleotides in PDB file(s)
Scored sequences and counts
GCUGAAU-C 7
U--GAAUAA 6
U--UAAGAG 6
CC-GAAA-G 4
UC-GAAA-G 4
UC-GAAUAG 3
CC-UAAA-G 3
CU-GAAA-G 3
AA-CAAUAA 1
CU-GAAUAA 1
A--AAAUAU 1
C--GAACAG 1
C--GAAUAG 1
G--AAAAAC 1
G--GAAAAC 1
U--AAAUAA 1
U--CAAUAG 1
U--GAACAA 1
-A-CAAA-- 1
Click on headings to reorder table
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group HL_80922.2
Basepair signature:
|
65.96 | 13.35 | 2 | 2 |
|
| 2 |
Motif group HL_53890.2
Basepair signature:
|
57.45 | 8.27 | 2 | 1 |
|
| 3 |
Motif group HL_50006.2
Basepair signature:
|
57.45 | 7.00 | 3 | 2 |
|
| 4 |
Motif group HL_28075.1
Basepair signature:
|
55.32 | -0.51 | 3 | 2 |
|
| 5 |
Motif group HL_04783.2
Basepair signature:
|
53.19 | 3.27 | 3 | 2 |
|
| 6 |
Motif group HL_20535.2
Basepair signature:
|
51.06 | -2.88 | 4 | 2 |
|
| 7 |
Motif group HL_18565.1
Basepair signature:
|
51.06 | -15.57 | 4 | 2 |
|
| 8 |
Motif group HL_65794.5
Basepair signature:
|
51.06 | -243.95 | 2 | 1 |
Pseudoknot geometry |
| 9 |
Motif group HL_87954.2
Basepair signature:
|
48.94 | -13.73 | 2 | 2 |
|
| 10 |
Motif group HL_82710.2
Basepair signature:
|
46.81 | -25.39 | 3 | 2 |
|
| 11 |
Motif group HL_31585.4
Basepair signature:
|
44.68 | -8.02 | 2 | 2 |
Purine riboswitch |
| 12 |
Motif group HL_30068.2
Basepair signature:
|
44.68 | -13.43 | 3 | 2 |
|
| 13 |
Motif group HL_97917.2
Basepair signature:
|
40.43 | -9.12 | 4 | 3 |
|
| 14 |
Motif group HL_20167.2
Basepair signature:
|
40.43 | -17.71 | 3 | 2 |
|
| 15 |
Motif group HL_87553.1
Basepair signature:
|
38.30 | -9.10 | 4 | 3 |
|
| 16 |
Motif group HL_04259.3
Basepair signature:
|
38.30 | -18.45 | 3 | 2 |
GNRA with extra cWW |
| 17 |
Motif group HL_50318.1
Basepair signature:
|
38.30 | -25.45 | 4 | 4 |
|
| 18 |
Motif group HL_33983.1
Basepair signature:
|
36.17 | -13.67 | 4 | 3 |
|
| 19 |
Motif group HL_02817.2
Basepair signature:
|
34.04 | -14.50 | 3 | 2 |
|
| 20 |
Motif group HL_75660.5
Basepair signature:
|
31.91 | -32.12 | 2 | 1 |
|
| 21 |
Motif group HL_10540.1
Basepair signature:
|
29.79 | -0.17 | 4 | 2 |
|
| 22 |
Motif group HL_10453.3
Basepair signature:
|
29.79 | -20.82 | 4 | 2 |
tRNA anticodon loop |
| 23 |
Motif group HL_86769.4
Basepair signature:
|
29.79 | -25.43 | 4 | 3 |
|
| 24 |
Motif group HL_59843.1
Basepair signature:
|
27.66 | -21.32 | 3 | 2 |
|
| 25 |
Motif group HL_93535.1
Basepair signature:
|
27.66 | -23.50 | 2 | 2 |
|
| 26 |
Motif group HL_59735.5
Basepair signature:
|
27.66 | -31.74 | 3 | 2 |
|
| 27 |
Motif group HL_57176.2
Basepair signature:
|
25.53 | -13.33 | 2 | 2 |
Pseudoknot geometry with 3' bulge |
| 28 |
Motif group HL_66103.1
Basepair signature:
|
25.53 | -28.28 | 3 | 3 |
|
| 29 |
Motif group HL_57875.1
Basepair signature:
|
25.53 | -34.79 | 3 | 2 |
|
| 30 |
Motif group HL_62934.1
Basepair signature:
|
25.53 | -41.21 | 3 | 3 |
|
| 31 |
Motif group HL_01609.3
Basepair signature:
|
23.40 | -42.01 | 3 | 2 |
T-loop with 2 bulged bases not stacked |
| 32 |
Motif group HL_77436.5
Basepair signature:
|
21.28 | -22.36 | 3 | 2 |
T-loop related |
| 33 |
Motif group HL_37824.7
Basepair signature:
|
21.28 | -39.68 | 1 | 1 |
GNRA |
| 34 |
Motif group HL_49922.4
Basepair signature:
|
21.28 | -45.17 | 3 | 3 |
|
| 35 |
Motif group HL_77082.1
Basepair signature:
|
21.28 | -61.97 | 4 | 2 |
Pseudoknot geometry |
| 36 |
Motif group HL_50537.6
Basepair signature:
|
17.02 | -23.52 | 4 | 3 |
tRNA anticodon loop with synthetase |
| 37 |
Motif group HL_07886.3
Basepair signature:
|
17.02 | -41.12 | 3 | 2 |
|
| 38 |
Motif group HL_85993.1
Basepair signature:
|
14.89 | -33.86 | 5 | 3 |
|
| 39 |
Motif group HL_51447.1
Basepair signature:
|
14.89 | -40.59 | 4 | 4 |
|
| 40 |
Motif group HL_13189.1
Basepair signature:
|
14.89 | -77.00 | 4 | 3 |
|
| 41 |
Motif group HL_22622.1
Basepair signature:
|
14.89 | -246.02 | 5 | 4 |
|
| 42 |
Motif group HL_15574.1
Basepair signature:
|
12.77 | -34.32 | 4 | 2 |
|
| 43 |
Motif group HL_69752.2
Basepair signature:
|
12.77 | -53.51 | 4 | 3 |
|
| 44 |
Motif group HL_99748.1
Basepair signature:
|
10.64 | -21.30 | 5 | 4 |
Other HL |
| 45 |
Motif group HL_41464.2
Basepair signature:
|
10.64 | -36.91 | 4 | 3 |
|
| 46 |
Motif group HL_22584.6
Basepair signature:
|
10.64 | -54.28 | 3 | 2 |
Fab BL3-6 binding hairpin with tSW |
| 47 |
Motif group HL_00914.1
Basepair signature:
|
8.51 | -35.62 | 5 | 3 |
|
| 48 |
Motif group HL_39243.1
Basepair signature:
|
8.51 | -259.76 | 5 | 3 |
|
| 49 |
Motif group HL_13529.1
Basepair signature:
|
6.38 | -32.40 | 4 | 3 |
|
| 50 |
Motif group HL_47854.1
Basepair signature:
|
6.38 | -48.28 | 5 | 4 |
|
| 51 |
Motif group HL_37344.1
Basepair signature:
|
6.38 | -48.90 | 5 | 3 |
|
| 52 |
Motif group HL_89567.2
Basepair signature:
|
6.38 | -54.42 | 4 | 3 |
|
| 53 |
Motif group HL_70782.2
Basepair signature:
|
6.38 | -55.04 | 4 | 3 |
|
| 54 |
Motif group HL_46501.1
Basepair signature:
|
6.38 | -83.47 | 3 | 2 |
|
| 55 |
Motif group HL_78197.1
Basepair signature:
|
6.38 | -335.60 | 4 | 3 |
|
| 56 |
Motif group HL_38168.1
Basepair signature:
|
4.26 | -48.91 | 3 | 2 |
|
| 57 |
Motif group HL_26934.1
Basepair signature:
|
2.13 | -44.53 | 5 | 4 |
|
| 58 |
Motif group HL_56131.2
Basepair signature:
|
2.13 | -70.79 | 3 | 3 |
|
| 59 |
Motif group HL_89893.1
Basepair signature:
|
0.00 | -42.76 | 5 | 4 |
|
| 60 |
Motif group HL_50860.2
Basepair signature:
|
0.00 | -43.09 | 4 | 3 |
|
| 61 |
Motif group HL_78347.4
Basepair signature:
|
0.00 | -48.70 | 4 | 3 |
|
| 62 |
Motif group HL_48417.5
Basepair signature:
|
0.00 | -50.04 | 3 | 3 |
|
| 63 |
Motif group HL_13963.3
Basepair signature:
|
0.00 | -50.46 | 5 | 3 |
|
| 64 |
Motif group HL_20743.5
Basepair signature:
|
0.00 | -51.14 | 4 | 3 |
|
| 65 |
Motif group HL_73266.9
Basepair signature:
|
0.00 | -52.47 | 4 | 3 |
|
| 66 |
Motif group HL_30680.3
Basepair signature:
|
0.00 | -53.74 | 4 | 3 |
Pseudoknot geometry |
| 67 |
Motif group HL_15802.1
Basepair signature:
|
0.00 | -54.29 | 6 | 5 |
|
| 68 |
Motif group HL_61996.2
Basepair signature:
|
0.00 | -60.68 | 4 | 3 |
|
| 69 |
Motif group HL_59330.1
Basepair signature:
|
0.00 | -62.70 | 6 | 5 |
|
| 70 |
Motif group HL_04641.1
Basepair signature:
|
0.00 | -63.52 | 6 | 5 |
|
| 71 |
Motif group HL_37369.2
Basepair signature:
|
0.00 | -64.45 | 4 | 3 |
|
| 72 |
Motif group HL_93438.2
Basepair signature:
|
0.00 | -65.12 | 5 | 4 |
|
| 73 |
Motif group HL_25061.1
Basepair signature:
|
0.00 | -65.12 | 5 | 4 |
|
| 74 |
Motif group HL_57863.1
Basepair signature:
|
0.00 | -66.69 | 6 | 5 |
G-quadruplex fragment |
| 75 |
Motif group HL_86012.1
Basepair signature:
|
0.00 | -67.75 | 6 | 4 |
T-loop with unstacked turn |
| 76 |
Motif group HL_25967.2
Basepair signature:
|
0.00 | -68.35 | 5 | 4 |
|
| 77 |
Motif group HL_80599.2
Basepair signature:
|
0.00 | -69.66 | 5 | 4 |
|
| 78 |
Motif group HL_38901.2
Basepair signature:
|
0.00 | -69.87 | 3 | 2 |
tRNA D-loop |
| 79 |
Motif group HL_75293.5
Basepair signature:
|
0.00 | -70.99 | 4 | 3 |
|
| 80 |
Motif group HL_02887.3
Basepair signature:
|
0.00 | -71.42 | 5 | 4 |
T-loop with 3 stacked bulged bases |
| 81 |
Motif group HL_87463.1
Basepair signature:
|
0.00 | -71.86 | 6 | 5 |
|
| 82 |
Motif group HL_27670.2
Basepair signature:
|
0.00 | -72.07 | 4 | 3 |
T-loop with unstacked turn |
| 83 |
Motif group HL_21372.1
Basepair signature:
|
0.00 | -76.09 | 5 | 4 |
|
| 84 |
Motif group HL_98864.1
Basepair signature:
|
0.00 | -79.12 | 6 | 5 |
T-loop with unstacked turn |
| 85 |
Motif group HL_81538.2
Basepair signature:
|
0.00 | -79.27 | 2 | 2 |
GNRA with tandem sheared |
| 86 |
Motif group HL_36335.1
Basepair signature:
|
0.00 | -81.75 | 5 | 4 |
|
| 87 |
Motif group HL_84299.4
Basepair signature:
|
0.00 | -81.91 | 4 | 3 |
|
| 88 |
Motif group HL_08100.1
Basepair signature:
|
0.00 | -82.74 | 4 | 3 |
|
| 89 |
Motif group HL_58224.1
Basepair signature:
|
0.00 | -83.06 | 6 | 5 |
|
| 90 |
Motif group HL_64690.6
Basepair signature:
|
0.00 | -83.26 | 5 | 3 |
|
| 91 |
Motif group HL_81545.2
Basepair signature:
|
0.00 | -85.75 | 5 | 4 |
|
| 92 |
Motif group HL_20811.4
Basepair signature:
|
0.00 | -86.04 | 3 | 2 |
tRNA D-loop |
| 93 |
Motif group HL_83808.4
Basepair signature:
|
0.00 | -86.47 | 6 | 6 |
Pseudoknot |
| 94 |
Motif group HL_80709.3
Basepair signature:
|
0.00 | -87.05 | 3 | 2 |
|
| 95 |
Motif group HL_42046.2
Basepair signature:
|
0.00 | -88.49 | 4 | 4 |
|
| 96 |
Motif group HL_66853.7
Basepair signature:
|
0.00 | -89.53 | 5 | 4 |
|
| 97 |
Motif group HL_47787.2
Basepair signature:
|
0.00 | -90.15 | 3 | 2 |
|
| 98 |
Motif group HL_56676.1
Basepair signature:
|
0.00 | -90.26 | 3 | 2 |
|
| 99 |
Motif group HL_28252.8
Basepair signature:
|
0.00 | -91.02 | 4 | 3 |
T-loop with 2 stacked bulged bases |
| 100 |
Motif group HL_18423.1
Basepair signature:
|
0.00 | -91.08 | 6 | 5 |
|
| 101 |
Motif group HL_18978.1
Basepair signature:
|
0.00 | -93.58 | 6 | 6 |
|
| 102 |
Motif group HL_06059.6
Basepair signature:
|
0.00 | -96.73 | 3 | 2 |
tRNA anticodon loop |
| 103 |
Motif group HL_55195.3
Basepair signature:
|
0.00 | -100.33 | 3 | 2 |
|
| 104 |
Motif group HL_86870.2
Basepair signature:
|
0.00 | -103.51 | 3 | 3 |
|
| 105 |
Motif group HL_90620.1
Basepair signature:
|
0.00 | -103.69 | 6 | 5 |
|
| 106 |
Motif group HL_04642.1
Basepair signature:
|
0.00 | -106.21 | 6 | 5 |
tRNA D-loop |
| 107 |
Motif group HL_56334.1
Basepair signature:
|
0.00 | -106.51 | 3 | 2 |
Mini UNCG |
| 108 |
Motif group HL_29966.1
Basepair signature:
|
0.00 | -108.82 | 5 | 3 |
|
| 109 |
Motif group HL_01962.2
Basepair signature:
|
0.00 | -109.10 | 6 | 4 |
|
| 110 |
Motif group HL_06226.4
Basepair signature:
|
0.00 | -109.69 | 5 | 5 |
|
| 111 |
Motif group HL_68257.1
Basepair signature:
|
0.00 | -109.84 | 6 | 6 |
|
| 112 |
Motif group HL_43517.1
Basepair signature:
|
0.00 | -110.44 | 5 | 4 |
|
| 113 |
Motif group HL_25847.2
Basepair signature:
|
0.00 | -111.87 | 6 | 5 |
|
| 114 |
Motif group HL_67079.1
Basepair signature:
|
0.00 | -112.46 | 6 | 5 |
|
| 115 |
Motif group HL_71391.1
Basepair signature:
|
0.00 | -113.28 | 4 | 3 |
|
| 116 |
Motif group HL_89199.2
Basepair signature:
|
0.00 | -113.83 | 4 | 3 |
Mini UNCG |
| 117 |
Motif group HL_04171.7
Basepair signature:
|
0.00 | -116.18 | 6 | 5 |
|
| 118 |
Motif group HL_89881.5
Basepair signature:
|
0.00 | -117.36 | 6 | 6 |
|
| 119 |
Motif group HL_53454.2
Basepair signature:
|
0.00 | -117.88 | 4 | 4 |
|
| 120 |
Motif group HL_32735.2
Basepair signature:
|
0.00 | -120.61 | 4 | 4 |
|
| 121 |
Motif group HL_60266.1
Basepair signature:
|
0.00 | -121.61 | 6 | 5 |
|
| 122 |
Motif group HL_02483.1
Basepair signature:
|
0.00 | -122.19 | 7 | 6 |
|
| 123 |
Motif group HL_45785.1
Basepair signature:
|
0.00 | -122.87 | 8 | 7 |
|
| 124 |
Motif group HL_53504.3
Basepair signature:
|
0.00 | -122.95 | 6 | 4 |
|
| 125 |
Motif group HL_98252.1
Basepair signature:
|
0.00 | -123.75 | 8 | 6 |
|
| 126 |
Motif group HL_41543.1
Basepair signature:
|
0.00 | -124.89 | 8 | 7 |
|
| 127 |
Motif group HL_91939.2
Basepair signature:
|
0.00 | -126.26 | 6 | 5 |
|
| 128 |
Motif group HL_23010.1
Basepair signature:
|
0.00 | -126.78 | 7 | 6 |
|
| 129 |
Motif group HL_48778.2
Basepair signature:
|
0.00 | -127.45 | 3 | 3 |
Mini UNCG |
| 130 |
Motif group HL_34617.5
Basepair signature:
|
0.00 | -128.58 | 3 | 2 |
UNCG |
| 131 |
Motif group HL_74379.3
Basepair signature:
|
0.00 | -129.10 | 8 | 6 |
|
| 132 |
Motif group HL_16991.1
Basepair signature:
|
0.00 | -130.60 | 7 | 7 |
G-quadruplex fragment |
| 133 |
Motif group HL_45175.1
Basepair signature:
|
0.00 | -130.76 | 5 | 5 |
tRNA D-loop |
| 134 |
Motif group HL_65313.1
Basepair signature:
|
0.00 | -132.36 | 5 | 4 |
|
| 135 |
Motif group HL_41902.1
Basepair signature:
|
0.00 | -138.79 | 8 | 7 |
|
| 136 |
Motif group HL_86883.1
Basepair signature:
|
0.00 | -141.44 | 5 | 3 |
|
| 137 |
Motif group HL_27483.1
Basepair signature:
|
0.00 | -142.52 | 4 | 4 |
|
| 138 |
Motif group HL_78677.1
Basepair signature:
|
0.00 | -143.67 | 4 | 3 |
|
| 139 |
Motif group HL_49941.1
Basepair signature:
|
0.00 | -149.34 | 7 | 6 |
tRNA D-loop |
| 140 |
Motif group HL_32346.4
Basepair signature:
|
0.00 | -151.73 | 4 | 3 |
|
| 141 |
Motif group HL_70658.1
Basepair signature:
|
0.00 | -154.63 | 8 | 7 |
|
| 142 |
Motif group HL_22135.1
Basepair signature:
|
0.00 | -156.44 | 4 | 4 |
|
| 143 |
Motif group HL_05304.3
Basepair signature:
|
0.00 | -158.97 | 8 | 6 |
|
| 144 |
Motif group HL_23509.1
Basepair signature:
|
0.00 | -159.90 | 9 | 8 |
|
| 145 |
Motif group HL_86109.1
Basepair signature:
|
0.00 | -163.57 | 8 | 7 |
|
| 146 |
Motif group HL_81100.2
Basepair signature:
|
0.00 | -164.13 | 5 | 4 |
|
| 147 |
Motif group HL_32392.1
Basepair signature:
|
0.00 | -169.12 | 5 | 4 |
|
| 148 |
Motif group HL_07583.1
Basepair signature:
|
0.00 | -174.68 | 8 | 7 |
|
| 149 |
Motif group HL_84847.1
Basepair signature:
|
0.00 | -183.60 | 9 | 7 |
|
| 150 |
Motif group HL_81205.3
Basepair signature:
|
0.00 | -185.36 | 8 | 7 |
|
| 151 |
Motif group HL_40252.4
Basepair signature:
|
0.00 | -186.12 | 7 | 6 |
|
| 152 |
Motif group HL_35941.1
Basepair signature:
|
0.00 | -186.57 | 5 | 5 |
|
| 153 |
Motif group HL_13971.1
Basepair signature:
|
0.00 | -188.74 | 10 | 9 |
|
| 154 |
Motif group HL_80362.1
Basepair signature:
|
0.00 | -192.70 | 5 | 4 |
|
| 155 |
Motif group HL_60914.1
Basepair signature:
|
0.00 | -195.93 | 5 | 4 |
|
| 156 |
Motif group HL_26631.1
Basepair signature:
|
0.00 | -208.10 | 4 | 4 |
|
| 157 |
Motif group HL_74055.2
Basepair signature:
|
0.00 | -208.56 | 8 | 8 |
|
| 158 |
Motif group HL_83632.1
Basepair signature:
|
0.00 | -210.03 | 4 | 2 |
tRNA anticodon loop |
| 159 |
Motif group HL_29762.1
Basepair signature:
|
0.00 | -212.11 | 5 | 5 |
|
| 160 |
Motif group HL_68767.1
Basepair signature:
|
0.00 | -212.13 | 7 | 6 |
tRNA D-loop |
| 161 |
Motif group HL_07480.2
Basepair signature:
|
0.00 | -215.16 | 8 | 6 |
|
| 162 |
Motif group HL_73255.1
Basepair signature:
|
0.00 | -216.70 | 6 | 5 |
|
| 163 |
Motif group HL_38046.1
Basepair signature:
|
0.00 | -220.77 | 6 | 4 |
|
| 164 |
Motif group HL_97733.1
Basepair signature:
|
0.00 | -224.86 | 7 | 5 |
|
| 165 |
Motif group HL_73247.1
Basepair signature:
|
0.00 | -225.64 | 9 | 9 |
Pseudoknot geometry |
| 166 |
Motif group HL_08602.1
Basepair signature:
|
0.00 | -227.66 | 9 | 8 |
|
| 167 |
Motif group HL_38808.1
Basepair signature:
|
0.00 | -227.91 | 5 | 3 |
|
| 168 |
Motif group HL_91503.7
Basepair signature:
|
0.00 | -230.82 | 6 | 5 |
|
| 169 |
Motif group HL_98870.1
Basepair signature:
|
0.00 | -231.59 | 9 | 9 |
|
| 170 |
Motif group HL_02581.1
Basepair signature:
|
0.00 | -233.80 | 10 | 8 |
tRNA D-loop |
| 171 |
Motif group HL_29129.3
Basepair signature:
|
0.00 | -233.95 | 6 | 5 |
|
| 172 |
Motif group HL_80008.1
Basepair signature:
|
0.00 | -234.29 | 4 | 3 |
|
| 173 |
Motif group HL_85367.2
Basepair signature:
|
0.00 | -234.80 | 4 | 3 |
|
| 174 |
Motif group HL_34964.1
Basepair signature:
|
0.00 | -242.43 | 7 | 6 |
|
| 175 |
Motif group HL_09452.1
Basepair signature:
|
0.00 | -245.79 | 5 | 4 |
|
| 176 |
Motif group HL_72628.1
Basepair signature:
|
0.00 | -247.98 | 4 | 4 |
|
| 177 |
Motif group HL_99769.3
Basepair signature:
|
0.00 | -248.93 | 7 | 6 |
|
| 178 |
Motif group HL_85434.1
Basepair signature:
|
0.00 | -248.96 | 7 | 5 |
|
| 179 |
Motif group HL_69139.1
Basepair signature:
|
0.00 | -258.27 | 6 | 6 |
|
| 180 |
Motif group HL_23115.1
Basepair signature:
|
0.00 | -259.16 | 8 | 6 |
tRNA D-loop |
| 181 |
Motif group HL_93135.1
Basepair signature:
|
0.00 | -260.84 | 7 | 6 |
Pseudoknot |
| 182 |
Motif group HL_91641.1
Basepair signature:
|
0.00 | -262.83 | 10 | 10 |
|
| 183 |
Motif group HL_35677.3
Basepair signature:
|
0.00 | -262.91 | 5 | 4 |
|
| 184 |
Motif group HL_80411.1
Basepair signature:
|
0.00 | -264.34 | 8 | 6 |
tRNA D-loop |
| 185 |
Motif group HL_14757.1
Basepair signature:
|
0.00 | -267.75 | 11 | 11 |
|
| 186 |
Motif group HL_94980.1
Basepair signature:
|
0.00 | -268.92 | 5 | 4 |
|
| 187 |
Motif group HL_88558.1
Basepair signature:
|
0.00 | -272.03 | 6 | 6 |
|
| 188 |
Motif group HL_93616.2
Basepair signature:
|
0.00 | -288.59 | 7 | 6 |
tRNA D-loop |
| 189 |
Motif group HL_52953.3
Basepair signature:
|
0.00 | -291.69 | 3 | 2 |
|
| 190 |
Motif group HL_99040.1
Basepair signature:
|
0.00 | -308.24 | 5 | 4 |
|
| 191 |
Motif group HL_20751.2
Basepair signature:
|
0.00 | -308.50 | 9 | 8 |
|
| 192 |
Motif group HL_11542.1
Basepair signature:
|
0.00 | -311.35 | 8 | 7 |
|
| 193 |
Motif group HL_67667.2
Basepair signature:
|
0.00 | -311.59 | 5 | 4 |
|
| 194 |
Motif group HL_97756.2
Basepair signature:
|
0.00 | -311.62 | 10 | 9 |
|
| 195 |
Motif group HL_88205.2
Basepair signature:
|
0.00 | -345.88 | 4 | 3 |
|
| 196 |
Motif group HL_51921.1
Basepair signature:
|
0.00 | -346.34 | 15 | 14 |
|
| 197 |
Motif group HL_66482.1
Basepair signature:
|
0.00 | -359.14 | 11 | 11 |
|
| 198 |
Motif group HL_93324.4
Basepair signature:
|
0.00 | -362.92 | 3 | 3 |
Pseudoknot geometry |
| 199 |
Motif group HL_10456.1
Basepair signature:
|
0.00 | -365.04 | 12 | 11 |
|
| 200 |
Motif group HL_28791.1
Basepair signature:
|
0.00 | -369.87 | 5 | 4 |
|
| 201 |
Motif group HL_92488.1
Basepair signature:
|
0.00 | -400.02 | 11 | 10 |
|
| 202 |
Motif group HL_50779.4
Basepair signature:
|
0.00 | -1538.79 | 6 | 4 |
|
| 203 |
Motif group HL_93383.1
Basepair signature:
|
0.00 | -1657.10 | 4 | 4 |
|
| 204 |
Motif group HL_80241.1
Basepair signature:
|
0.00 | -2196.92 | 5 | 4 |
|
| 205 |
Motif group HL_12870.1
Basepair signature:
|
0.00 | -2492.51 | 8 | 7 |
|
| 206 |
Motif group HL_76094.1
Basepair signature:
|
0.00 | -2878.24 | 4 | 3 |
|
| 207 |
Motif group HL_33074.4
Basepair signature:
|
0.00 | -3029.92 | 8 | 7 |
U1 small nuclear ribonucleoprotein A binding hairpin |
| 208 |
Motif group HL_89346.1
Basepair signature:
|
0.00 | -3083.52 | 12 | 12 |
|
| 209 |
Motif group HL_73183.1
Basepair signature:
|
0.00 | -3834.94 | 9 | 8 |
Pseudoknot geometry with G-bulge |
| 210 |
Motif group HL_67407.5
Basepair signature:
|
0.00 | -3860.28 | 7 | 6 |
|
| 211 |
Motif group HL_99324.1
Basepair signature:
|
0.00 | -3998.39 | 11 | 11 |
|
| 212 |
Motif group HL_85461.1
Basepair signature:
|
0.00 | -4013.02 | 14 | 13 |
|
| 213 |
Motif group HL_81312.1
Basepair signature:
|
0.00 | -4032.95 | 7 | 6 |
|
| 214 |
Motif group HL_00317.1
Basepair signature:
|
0.00 | -4037.88 | 15 | 14 |
|
| 215 |
Motif group HL_21400.1
Basepair signature:
|
0.00 | -4046.95 | 17 | 16 |
G-quadruplex |
| 216 |
Motif group HL_19210.3
Basepair signature:
|
0.00 | -4047.98 | 5 | 5 |
|
| 217 |
Motif group HL_60293.1
Basepair signature:
|
0.00 | -4048.50 | 16 | 16 |
G-quadruplex |
| 218 |
Motif group HL_35354.1
Basepair signature:
|
0.00 | -4059.77 | 19 | 17 |
|
| 219 |
Motif group HL_12758.3
Basepair signature:
|
0.00 | -4060.87 | 19 | 18 |
G-quadruplex |
| 220 |
Motif group HL_59564.1
Basepair signature:
|
0.00 | -4073.14 | 15 | 14 |
|
| 221 |
Motif group HL_55305.1
Basepair signature:
|
0.00 | -4153.68 | 7 | 6 |
|
| 222 |
Motif group HL_01255.1
Basepair signature:
|
0.00 | -4263.32 | 7 | 6 |
|
| 223 |
Motif group HL_08510.1
Basepair signature:
|
0.00 | -4391.59 | 7 | 5 |
|
| 224 |
Motif group HL_16398.2
Basepair signature:
|
0.00 | -4446.43 | 8 | 7 |
|
| 225 |
Motif group HL_50851.1
Basepair signature:
|
0.00 | -4449.50 | 9 | 8 |
G-quadruplex fragment |
| 226 |
Motif group HL_38649.1
Basepair signature:
|
0.00 | -4456.68 | 6 | 5 |
|
| 227 |
Motif group HL_74292.1
Basepair signature:
|
0.00 | -4528.07 | 6 | 4 |
|
| 228 |
Motif group HL_47732.1
Basepair signature:
|
0.00 | -4595.82 | 7 | 6 |
|
| 229 |
Motif group HL_73916.1
Basepair signature:
|
0.00 | -4634.58 | 33 | 33 |
|
| 230 |
Motif group HL_55436.1
Basepair signature:
|
0.00 | -4665.59 | 5 | 4 |
|
| 231 |
Motif group HL_64292.1
Basepair signature:
|
0.00 | -4686.50 | 10 | 10 |
|
| 232 |
Motif group HL_04725.1
Basepair signature:
|
0.00 | -4767.81 | 8 | 7 |
|
| 233 |
Motif group HL_29958.1
Basepair signature:
|
0.00 | -4787.18 | 10 | 8 |
|
| 234 |
Motif group HL_07903.1
Basepair signature:
|
0.00 | -4960.08 | 10 | 9 |
|
| 235 |
Motif group HL_31581.6
Basepair signature:
|
0.00 | -4980.61 | 8 | 7 |
|
| 236 |
Motif group HL_63355.1
Basepair signature:
|
0.00 | -5003.86 | 8 | 7 |
|
| 237 |
Motif group HL_88364.2
Basepair signature:
|
0.00 | -5042.83 | 12 | 11 |
|
| 238 |
Motif group HL_99867.1
Basepair signature:
|
0.00 | -5048.16 | 5 | 5 |
|
| 239 |
Motif group HL_15118.1
Basepair signature:
|
0.00 | -5332.35 | 8 | 7 |
|
| 240 |
Motif group HL_94376.1
Basepair signature:
|
0.00 | -5396.96 | 7 | 6 |
Pseudoknot geometry |
| 241 |
Motif group HL_20781.1
Basepair signature:
|
0.00 | -5505.05 | 6 | 5 |
|
| 242 |
Motif group HL_70751.1
Basepair signature:
|
0.00 | -5532.34 | 6 | 5 |
|
| 243 |
Motif group HL_36684.4
Basepair signature:
|
0.00 | -5687.45 | 6 | 5 |
|
| 244 |
Motif group HL_78284.1
Basepair signature:
|
0.00 | -5704.67 | 6 | 5 |
|
| 245 |
Motif group HL_50418.1
Basepair signature:
|
0.00 | -5803.53 | 5 | 5 |
|
| 246 |
Motif group HL_24792.1
Basepair signature:
|
0.00 | -5845.54 | 7 | 6 |
|
| 247 |
Motif group HL_42998.2
Basepair signature:
|
0.00 | -5910.81 | 4 | 3 |
|
| 248 |
Motif group HL_68572.1
Basepair signature:
|
0.00 | -5914.05 | 8 | 7 |
|
| 249 |
Motif group HL_58539.1
Basepair signature:
|
0.00 | -6310.57 | 11 | 10 |
|
| 250 |
Motif group HL_97983.1
Basepair signature:
|
0.00 | -6330.57 | 7 | 5 |
|
| 251 |
Motif group HL_77600.2
Basepair signature:
|
0.00 | -7132.23 | 4 | 3 |
|
| 252 |
Motif group HL_07951.3
Basepair signature:
|
0.00 | -9999.00 | 5 | 4 |
tRNA D-loop |
| 253 |
Motif group HL_09260.2
Basepair signature:
|
0.00 | -9999.00 | 7 | 6 |
tRNA D-loop |