JAR3D
Query RF00168-CCF-3.98 completed
Run on Motif Atlas Version
using the Rfam secondary structure. Run with the CaCoFold secondary structure.
Loop 14 Hairpin loop
Column numbers: 189-195 - View nucleotides in PDB file(s)
Scored sequences and counts
CGUUCGC 4
UGUCGAA 3
UUUACAU 2
CGUCCUG 1
CGUUCCU 1
UAAUGUA 1
UAUUCAC 1
UCCCCAG 1
UGUCCGU 1
UUUCCCG 1
UUUUGAU 1
AAUUUU- 1
UCUGAU- 1
UAAUA-- 1
AAGA--- 1
UAAU--- 1
UGUU--- 1
UUUU--- 1
U-AU--- 1
Omitted sequenced and counts
A------ 10
U------ 10
C------ 1
G------ 1
Click on headings to reorder table
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group HL_50006.2
Basepair signature:
|
24.00 | -34.66 | 4 | 2 |
|
| 2 |
Motif group HL_53890.2
Basepair signature:
|
24.00 | -37.76 | 3 | 2 |
|
| 3 |
Motif group HL_13189.1
Basepair signature:
|
24.00 | -41.87 | 3 | 2 |
|
| 4 |
Motif group HL_08100.1
Basepair signature:
|
24.00 | -55.69 | 4 | 2 |
|
| 5 |
Motif group HL_48778.2
Basepair signature:
|
24.00 | -68.26 | 3 | 2 |
Mini UNCG |
| 6 |
Motif group HL_50318.1
Basepair signature:
|
20.00 | -48.97 | 5 | 3 |
|
| 7 |
Motif group HL_56334.1
Basepair signature:
|
20.00 | -70.63 | 3 | 2 |
Mini UNCG |
| 8 |
Motif group HL_37344.1
Basepair signature:
|
20.00 | -424.12 | 4 | 3 |
|
| 9 |
Motif group HL_37369.2
Basepair signature:
|
20.00 | -1279.38 | 4 | 3 |
|
| 10 |
Motif group HL_57176.2
Basepair signature:
|
20.00 | -1717.67 | 3 | 2 |
Pseudoknot geometry with 3' bulge |
| 11 |
Motif group HL_30680.3
Basepair signature:
|
20.00 | -2967.70 | 3 | 2 |
Pseudoknot geometry |
| 12 |
Motif group HL_66103.1
Basepair signature:
|
16.00 | -46.35 | 4 | 3 |
|
| 13 |
Motif group HL_32346.4
Basepair signature:
|
16.00 | -89.19 | 3 | 2 |
|
| 14 |
Motif group HL_75660.5
Basepair signature:
|
16.00 | -476.89 | 3 | 2 |
|
| 15 |
Motif group HL_97917.2
Basepair signature:
|
16.00 | -481.87 | 4 | 4 |
|
| 16 |
Motif group HL_47787.2
Basepair signature:
|
16.00 | -481.96 | 3 | 2 |
|
| 17 |
Motif group HL_70782.2
Basepair signature:
|
12.00 | -31.79 | 3 | 2 |
|
| 18 |
Motif group HL_48417.5
Basepair signature:
|
12.00 | -42.49 | 3 | 2 |
|
| 19 |
Motif group HL_57875.1
Basepair signature:
|
12.00 | -43.91 | 3 | 2 |
|
| 20 |
Motif group HL_56131.2
Basepair signature:
|
12.00 | -47.32 | 4 | 3 |
|
| 21 |
Motif group HL_26934.1
Basepair signature:
|
12.00 | -63.22 | 5 | 4 |
|
| 22 |
Motif group HL_42046.2
Basepair signature:
|
12.00 | -65.84 | 4 | 2 |
|
| 23 |
Motif group HL_13963.3
Basepair signature:
|
12.00 | -66.62 | 5 | 3 |
|
| 24 |
Motif group HL_80922.2
Basepair signature:
|
12.00 | -67.54 | 4 | 3 |
|
| 25 |
Motif group HL_86870.2
Basepair signature:
|
12.00 | -92.77 | 4 | 3 |
|
| 26 |
Motif group HL_29966.1
Basepair signature:
|
12.00 | -1781.74 | 5 | 4 |
|
| 27 |
Motif group HL_00914.1
Basepair signature:
|
12.00 | -1853.06 | 5 | 4 |
|
| 28 |
Motif group HL_78347.4
Basepair signature:
|
8.00 | -53.37 | 4 | 2 |
|
| 29 |
Motif group HL_13529.1
Basepair signature:
|
8.00 | -82.84 | 5 | 4 |
|
| 30 |
Motif group HL_38901.2
Basepair signature:
|
8.00 | -93.17 | 3 | 3 |
tRNA D-loop |
| 31 |
Motif group HL_76094.1
Basepair signature:
|
8.00 | -299.36 | 4 | 4 |
|
| 32 |
Motif group HL_38168.1
Basepair signature:
|
8.00 | -477.69 | 4 | 3 |
|
| 33 |
Motif group HL_69752.2
Basepair signature:
|
8.00 | -495.07 | 4 | 2 |
|
| 34 |
Motif group HL_94980.1
Basepair signature:
|
8.00 | -585.92 | 4 | 3 |
|
| 35 |
Motif group HL_31585.4
Basepair signature:
|
8.00 | -2147.53 | 3 | 2 |
Purine riboswitch |
| 36 |
Motif group HL_04783.2
Basepair signature:
|
4.00 | -77.04 | 3 | 3 |
|
| 37 |
Motif group HL_87954.2
Basepair signature:
|
4.00 | -77.92 | 4 | 2 |
|
| 38 |
Motif group HL_27483.1
Basepair signature:
|
4.00 | -83.28 | 4 | 3 |
|
| 39 |
Motif group HL_07886.3
Basepair signature:
|
4.00 | -85.83 | 4 | 3 |
|
| 40 |
Motif group HL_46501.1
Basepair signature:
|
4.00 | -89.90 | 4 | 3 |
|
| 41 |
Motif group HL_87553.1
Basepair signature:
|
4.00 | -90.39 | 4 | 3 |
|
| 42 |
Motif group HL_28075.1
Basepair signature:
|
4.00 | -98.95 | 4 | 3 |
|
| 43 |
Motif group HL_78677.1
Basepair signature:
|
4.00 | -99.77 | 3 | 3 |
|
| 44 |
Motif group HL_82710.2
Basepair signature:
|
4.00 | -109.41 | 4 | 3 |
|
| 45 |
Motif group HL_39243.1
Basepair signature:
|
4.00 | -944.39 | 5 | 4 |
|
| 46 |
Motif group HL_65313.1
Basepair signature:
|
4.00 | -1766.33 | 4 | 3 |
|
| 47 |
Motif group HL_26631.1
Basepair signature:
|
4.00 | -1840.33 | 4 | 4 |
|
| 48 |
Motif group HL_10453.3
Basepair signature:
|
4.00 | -1853.43 | 4 | 3 |
tRNA anticodon loop |
| 49 |
Motif group HL_59735.5
Basepair signature:
|
4.00 | -3003.91 | 4 | 3 |
|
| 50 |
Motif group HL_32392.1
Basepair signature:
|
0.00 | -68.12 | 3 | 2 |
|
| 51 |
Motif group HL_43517.1
Basepair signature:
|
0.00 | -68.23 | 4 | 2 |
|
| 52 |
Motif group HL_86769.4
Basepair signature:
|
0.00 | -76.04 | 5 | 3 |
|
| 53 |
Motif group HL_86012.1
Basepair signature:
|
0.00 | -81.59 | 5 | 4 |
T-loop with unstacked turn |
| 54 |
Motif group HL_34617.5
Basepair signature:
|
0.00 | -83.77 | 3 | 2 |
UNCG |
| 55 |
Motif group HL_71391.1
Basepair signature:
|
0.00 | -87.95 | 4 | 2 |
|
| 56 |
Motif group HL_83808.4
Basepair signature:
|
0.00 | -91.48 | 5 | 4 |
Pseudoknot |
| 57 |
Motif group HL_62934.1
Basepair signature:
|
0.00 | -91.66 | 5 | 3 |
|
| 58 |
Motif group HL_20167.2
Basepair signature:
|
0.00 | -93.52 | 5 | 4 |
|
| 59 |
Motif group HL_22584.6
Basepair signature:
|
0.00 | -95.92 | 4 | 3 |
Fab BL3-6 binding hairpin with tSW |
| 60 |
Motif group HL_35941.1
Basepair signature:
|
0.00 | -97.55 | 4 | 3 |
|
| 61 |
Motif group HL_20743.5
Basepair signature:
|
0.00 | -105.61 | 6 | 4 |
|
| 62 |
Motif group HL_93438.2
Basepair signature:
|
0.00 | -113.87 | 6 | 5 |
|
| 63 |
Motif group HL_77436.5
Basepair signature:
|
0.00 | -114.71 | 4 | 3 |
T-loop related |
| 64 |
Motif group HL_89567.2
Basepair signature:
|
0.00 | -115.86 | 5 | 4 |
|
| 65 |
Motif group HL_02887.3
Basepair signature:
|
0.00 | -116.04 | 7 | 6 |
T-loop with 3 stacked bulged bases |
| 66 |
Motif group HL_49922.4
Basepair signature:
|
0.00 | -116.23 | 3 | 3 |
|
| 67 |
Motif group HL_50860.2
Basepair signature:
|
0.00 | -116.89 | 6 | 5 |
|
| 68 |
Motif group HL_41464.2
Basepair signature:
|
0.00 | -118.78 | 5 | 4 |
|
| 69 |
Motif group HL_37824.7
Basepair signature:
|
0.00 | -121.61 | 3 | 2 |
GNRA |
| 70 |
Motif group HL_20811.4
Basepair signature:
|
0.00 | -123.23 | 4 | 3 |
tRNA D-loop |
| 71 |
Motif group HL_61996.2
Basepair signature:
|
0.00 | -123.91 | 5 | 4 |
|
| 72 |
Motif group HL_10540.1
Basepair signature:
|
0.00 | -126.45 | 5 | 4 |
|
| 73 |
Motif group HL_67079.1
Basepair signature:
|
0.00 | -135.03 | 6 | 5 |
|
| 74 |
Motif group HL_73266.9
Basepair signature:
|
0.00 | -139.01 | 5 | 5 |
|
| 75 |
Motif group HL_41543.1
Basepair signature:
|
0.00 | -142.13 | 6 | 6 |
|
| 76 |
Motif group HL_81545.2
Basepair signature:
|
0.00 | -146.79 | 6 | 5 |
|
| 77 |
Motif group HL_28252.8
Basepair signature:
|
0.00 | -147.73 | 4 | 4 |
T-loop with 2 stacked bulged bases |
| 78 |
Motif group HL_01609.3
Basepair signature:
|
0.00 | -149.92 | 4 | 4 |
T-loop with 2 bulged bases not stacked |
| 79 |
Motif group HL_49941.1
Basepair signature:
|
0.00 | -150.32 | 7 | 6 |
tRNA D-loop |
| 80 |
Motif group HL_18423.1
Basepair signature:
|
0.00 | -152.96 | 7 | 5 |
|
| 81 |
Motif group HL_04171.7
Basepair signature:
|
0.00 | -162.09 | 6 | 6 |
|
| 82 |
Motif group HL_04259.3
Basepair signature:
|
0.00 | -162.45 | 4 | 3 |
GNRA with extra cWW |
| 83 |
Motif group HL_25847.2
Basepair signature:
|
0.00 | -162.52 | 7 | 6 |
|
| 84 |
Motif group HL_74379.3
Basepair signature:
|
0.00 | -169.22 | 9 | 7 |
|
| 85 |
Motif group HL_36335.1
Basepair signature:
|
0.00 | -171.50 | 8 | 6 |
|
| 86 |
Motif group HL_90620.1
Basepair signature:
|
0.00 | -173.41 | 8 | 7 |
|
| 87 |
Motif group HL_41902.1
Basepair signature:
|
0.00 | -178.51 | 9 | 8 |
|
| 88 |
Motif group HL_01962.2
Basepair signature:
|
0.00 | -180.59 | 7 | 6 |
|
| 89 |
Motif group HL_60266.1
Basepair signature:
|
0.00 | -187.87 | 7 | 6 |
|
| 90 |
Motif group HL_70658.1
Basepair signature:
|
0.00 | -189.34 | 8 | 7 |
|
| 91 |
Motif group HL_40252.4
Basepair signature:
|
0.00 | -200.88 | 7 | 7 |
|
| 92 |
Motif group HL_86109.1
Basepair signature:
|
0.00 | -206.75 | 9 | 7 |
|
| 93 |
Motif group HL_53504.3
Basepair signature:
|
0.00 | -211.35 | 7 | 6 |
|
| 94 |
Motif group HL_07583.1
Basepair signature:
|
0.00 | -212.75 | 9 | 8 |
|
| 95 |
Motif group HL_13971.1
Basepair signature:
|
0.00 | -213.42 | 8 | 7 |
|
| 96 |
Motif group HL_68767.1
Basepair signature:
|
0.00 | -227.96 | 9 | 7 |
tRNA D-loop |
| 97 |
Motif group HL_84847.1
Basepair signature:
|
0.00 | -232.58 | 9 | 9 |
|
| 98 |
Motif group HL_08602.1
Basepair signature:
|
0.00 | -233.62 | 8 | 8 |
|
| 99 |
Motif group HL_81205.3
Basepair signature:
|
0.00 | -235.30 | 10 | 9 |
|
| 100 |
Motif group HL_74055.2
Basepair signature:
|
0.00 | -241.62 | 10 | 10 |
|
| 101 |
Motif group HL_98870.1
Basepair signature:
|
0.00 | -267.23 | 10 | 9 |
|
| 102 |
Motif group HL_73247.1
Basepair signature:
|
0.00 | -270.09 | 10 | 9 |
Pseudoknot geometry |
| 103 |
Motif group HL_14757.1
Basepair signature:
|
0.00 | -296.49 | 12 | 12 |
|
| 104 |
Motif group HL_91641.1
Basepair signature:
|
0.00 | -301.64 | 12 | 11 |
|
| 105 |
Motif group HL_98864.1
Basepair signature:
|
0.00 | -307.28 | 6 | 5 |
T-loop with unstacked turn |
| 106 |
Motif group HL_57863.1
Basepair signature:
|
0.00 | -325.68 | 7 | 5 |
G-quadruplex fragment |
| 107 |
Motif group HL_04642.1
Basepair signature:
|
0.00 | -330.57 | 6 | 5 |
tRNA D-loop |
| 108 |
Motif group HL_68257.1
Basepair signature:
|
0.00 | -335.83 | 6 | 6 |
|
| 109 |
Motif group HL_66853.7
Basepair signature:
|
0.00 | -342.32 | 5 | 4 |
|
| 110 |
Motif group HL_97756.2
Basepair signature:
|
0.00 | -362.09 | 10 | 9 |
|
| 111 |
Motif group HL_23509.1
Basepair signature:
|
0.00 | -363.79 | 8 | 7 |
|
| 112 |
Motif group HL_18565.1
Basepair signature:
|
0.00 | -364.05 | 6 | 4 |
|
| 113 |
Motif group HL_16991.1
Basepair signature:
|
0.00 | -369.79 | 8 | 7 |
G-quadruplex fragment |
| 114 |
Motif group HL_45175.1
Basepair signature:
|
0.00 | -372.90 | 5 | 4 |
tRNA D-loop |
| 115 |
Motif group HL_99748.1
Basepair signature:
|
0.00 | -382.06 | 5 | 4 |
Other HL |
| 116 |
Motif group HL_98252.1
Basepair signature:
|
0.00 | -383.89 | 8 | 7 |
|
| 117 |
Motif group HL_89893.1
Basepair signature:
|
0.00 | -394.88 | 5 | 4 |
|
| 118 |
Motif group HL_88205.2
Basepair signature:
|
0.00 | -409.58 | 6 | 5 |
|
| 119 |
Motif group HL_50537.6
Basepair signature:
|
0.00 | -412.57 | 4 | 3 |
tRNA anticodon loop with synthetase |
| 120 |
Motif group HL_75293.5
Basepair signature:
|
0.00 | -425.25 | 6 | 5 |
|
| 121 |
Motif group HL_84299.4
Basepair signature:
|
0.00 | -426.86 | 5 | 4 |
|
| 122 |
Motif group HL_64690.6
Basepair signature:
|
0.00 | -434.46 | 5 | 4 |
|
| 123 |
Motif group HL_47854.1
Basepair signature:
|
0.00 | -447.77 | 6 | 5 |
|
| 124 |
Motif group HL_21372.1
Basepair signature:
|
0.00 | -461.29 | 5 | 4 |
|
| 125 |
Motif group HL_92488.1
Basepair signature:
|
0.00 | -473.37 | 12 | 11 |
|
| 126 |
Motif group HL_93535.1
Basepair signature:
|
0.00 | -476.11 | 4 | 3 |
|
| 127 |
Motif group HL_20535.2
Basepair signature:
|
0.00 | -485.85 | 5 | 3 |
|
| 128 |
Motif group HL_56676.1
Basepair signature:
|
0.00 | -493.36 | 3 | 2 |
|
| 129 |
Motif group HL_77082.1
Basepair signature:
|
0.00 | -495.45 | 4 | 3 |
Pseudoknot geometry |
| 130 |
Motif group HL_73255.1
Basepair signature:
|
0.00 | -504.29 | 7 | 5 |
|
| 131 |
Motif group HL_59843.1
Basepair signature:
|
0.00 | -514.69 | 4 | 3 |
|
| 132 |
Motif group HL_30068.2
Basepair signature:
|
0.00 | -520.22 | 3 | 3 |
|
| 133 |
Motif group HL_51921.1
Basepair signature:
|
0.00 | -526.97 | 15 | 14 |
|
| 134 |
Motif group HL_55195.3
Basepair signature:
|
0.00 | -527.41 | 3 | 2 |
|
| 135 |
Motif group HL_85434.1
Basepair signature:
|
0.00 | -544.20 | 6 | 4 |
|
| 136 |
Motif group HL_81538.2
Basepair signature:
|
0.00 | -548.39 | 4 | 3 |
GNRA with tandem sheared |
| 137 |
Motif group HL_22135.1
Basepair signature:
|
0.00 | -550.95 | 4 | 3 |
|
| 138 |
Motif group HL_60914.1
Basepair signature:
|
0.00 | -565.34 | 5 | 3 |
|
| 139 |
Motif group HL_93616.2
Basepair signature:
|
0.00 | -586.26 | 7 | 6 |
tRNA D-loop |
| 140 |
Motif group HL_29129.3
Basepair signature:
|
0.00 | -612.80 | 7 | 6 |
|
| 141 |
Motif group HL_80008.1
Basepair signature:
|
0.00 | -720.42 | 6 | 5 |
|
| 142 |
Motif group HL_72628.1
Basepair signature:
|
0.00 | -730.74 | 6 | 5 |
|
| 143 |
Motif group HL_99040.1
Basepair signature:
|
0.00 | -778.63 | 4 | 3 |
|
| 144 |
Motif group HL_65794.5
Basepair signature:
|
0.00 | -902.11 | 3 | 2 |
Pseudoknot geometry |
| 145 |
Motif group HL_18978.1
Basepair signature:
|
0.00 | -933.16 | 5 | 4 |
|
| 146 |
Motif group HL_52953.3
Basepair signature:
|
0.00 | -941.25 | 3 | 3 |
|
| 147 |
Motif group HL_28791.1
Basepair signature:
|
0.00 | -961.04 | 5 | 3 |
|
| 148 |
Motif group HL_06226.4
Basepair signature:
|
0.00 | -1002.83 | 7 | 6 |
|
| 149 |
Motif group HL_91939.2
Basepair signature:
|
0.00 | -1009.70 | 7 | 7 |
|
| 150 |
Motif group HL_02581.1
Basepair signature:
|
0.00 | -1016.01 | 10 | 9 |
tRNA D-loop |
| 151 |
Motif group HL_15802.1
Basepair signature:
|
0.00 | -1078.96 | 6 | 4 |
|
| 152 |
Motif group HL_07480.2
Basepair signature:
|
0.00 | -1098.38 | 8 | 7 |
|
| 153 |
Motif group HL_89881.5
Basepair signature:
|
0.00 | -1104.53 | 6 | 5 |
|
| 154 |
Motif group HL_02483.1
Basepair signature:
|
0.00 | -1128.24 | 8 | 6 |
|
| 155 |
Motif group HL_45785.1
Basepair signature:
|
0.00 | -1141.66 | 7 | 6 |
|
| 156 |
Motif group HL_87463.1
Basepair signature:
|
0.00 | -1199.14 | 6 | 5 |
|
| 157 |
Motif group HL_05304.3
Basepair signature:
|
0.00 | -1207.14 | 8 | 7 |
|
| 158 |
Motif group HL_58224.1
Basepair signature:
|
0.00 | -1248.54 | 6 | 5 |
|
| 159 |
Motif group HL_23010.1
Basepair signature:
|
0.00 | -1318.30 | 8 | 7 |
|
| 160 |
Motif group HL_04641.1
Basepair signature:
|
0.00 | -1319.02 | 7 | 6 |
|
| 161 |
Motif group HL_34964.1
Basepair signature:
|
0.00 | -1339.07 | 7 | 6 |
|
| 162 |
Motif group HL_25967.2
Basepair signature:
|
0.00 | -1355.08 | 4 | 3 |
|
| 163 |
Motif group HL_93383.1
Basepair signature:
|
0.00 | -1379.64 | 6 | 5 |
|
| 164 |
Motif group HL_99769.3
Basepair signature:
|
0.00 | -1404.57 | 6 | 6 |
|
| 165 |
Motif group HL_33983.1
Basepair signature:
|
0.00 | -1446.11 | 6 | 5 |
|
| 166 |
Motif group HL_22622.1
Basepair signature:
|
0.00 | -1466.34 | 5 | 4 |
|
| 167 |
Motif group HL_53454.2
Basepair signature:
|
0.00 | -1487.83 | 6 | 5 |
|
| 168 |
Motif group HL_11542.1
Basepair signature:
|
0.00 | -1524.01 | 10 | 8 |
|
| 169 |
Motif group HL_66482.1
Basepair signature:
|
0.00 | -1530.18 | 13 | 12 |
|
| 170 |
Motif group HL_25061.1
Basepair signature:
|
0.00 | -1538.02 | 6 | 4 |
|
| 171 |
Motif group HL_97733.1
Basepair signature:
|
0.00 | -1551.97 | 7 | 5 |
|
| 172 |
Motif group HL_10456.1
Basepair signature:
|
0.00 | -1555.63 | 14 | 13 |
|
| 173 |
Motif group HL_89199.2
Basepair signature:
|
0.00 | -1592.74 | 4 | 3 |
Mini UNCG |
| 174 |
Motif group HL_06059.6
Basepair signature:
|
0.00 | -1637.30 | 3 | 3 |
tRNA anticodon loop |
| 175 |
Motif group HL_80599.2
Basepair signature:
|
0.00 | -1637.50 | 5 | 4 |
|
| 176 |
Motif group HL_27670.2
Basepair signature:
|
0.00 | -1684.01 | 5 | 4 |
T-loop with unstacked turn |
| 177 |
Motif group HL_38046.1
Basepair signature:
|
0.00 | -1701.77 | 6 | 5 |
|
| 178 |
Motif group HL_85367.2
Basepair signature:
|
0.00 | -1740.53 | 5 | 3 |
|
| 179 |
Motif group HL_32735.2
Basepair signature:
|
0.00 | -1763.08 | 4 | 3 |
|
| 180 |
Motif group HL_20751.2
Basepair signature:
|
0.00 | -1781.19 | 10 | 8 |
|
| 181 |
Motif group HL_02817.2
Basepair signature:
|
0.00 | -1783.90 | 5 | 4 |
|
| 182 |
Motif group HL_50779.4
Basepair signature:
|
0.00 | -1784.33 | 6 | 5 |
|
| 183 |
Motif group HL_83632.1
Basepair signature:
|
0.00 | -1784.99 | 4 | 4 |
tRNA anticodon loop |
| 184 |
Motif group HL_59330.1
Basepair signature:
|
0.00 | -1795.54 | 5 | 4 |
|
| 185 |
Motif group HL_80709.3
Basepair signature:
|
0.00 | -1800.87 | 4 | 3 |
|
| 186 |
Motif group HL_86883.1
Basepair signature:
|
0.00 | -1805.49 | 4 | 3 |
|
| 187 |
Motif group HL_23115.1
Basepair signature:
|
0.00 | -1818.12 | 8 | 7 |
tRNA D-loop |
| 188 |
Motif group HL_91503.7
Basepair signature:
|
0.00 | -1890.00 | 6 | 6 |
|
| 189 |
Motif group HL_80411.1
Basepair signature:
|
0.00 | -1902.73 | 7 | 6 |
tRNA D-loop |
| 190 |
Motif group HL_29762.1
Basepair signature:
|
0.00 | -1909.53 | 7 | 6 |
|
| 191 |
Motif group HL_38808.1
Basepair signature:
|
0.00 | -1917.27 | 5 | 4 |
|
| 192 |
Motif group HL_88558.1
Basepair signature:
|
0.00 | -1922.46 | 8 | 7 |
|
| 193 |
Motif group HL_93135.1
Basepair signature:
|
0.00 | -2015.89 | 7 | 6 |
Pseudoknot |
| 194 |
Motif group HL_80362.1
Basepair signature:
|
0.00 | -2072.60 | 6 | 5 |
|
| 195 |
Motif group HL_12870.1
Basepair signature:
|
0.00 | -2119.94 | 8 | 8 |
|
| 196 |
Motif group HL_81100.2
Basepair signature:
|
0.00 | -2151.50 | 4 | 3 |
|
| 197 |
Motif group HL_69139.1
Basepair signature:
|
0.00 | -2185.61 | 7 | 6 |
|
| 198 |
Motif group HL_15574.1
Basepair signature:
|
0.00 | -2194.13 | 5 | 4 |
|
| 199 |
Motif group HL_35677.3
Basepair signature:
|
0.00 | -2211.96 | 5 | 4 |
|
| 200 |
Motif group HL_51447.1
Basepair signature:
|
0.00 | -2306.27 | 5 | 4 |
|
| 201 |
Motif group HL_85993.1
Basepair signature:
|
0.00 | -2321.35 | 6 | 5 |
|
| 202 |
Motif group HL_67667.2
Basepair signature:
|
0.00 | -2335.42 | 4 | 3 |
|
| 203 |
Motif group HL_09452.1
Basepair signature:
|
0.00 | -2473.77 | 5 | 4 |
|
| 204 |
Motif group HL_78197.1
Basepair signature:
|
0.00 | -2512.64 | 4 | 3 |
|
| 205 |
Motif group HL_80241.1
Basepair signature:
|
0.00 | -2523.67 | 5 | 3 |
|
| 206 |
Motif group HL_93324.4
Basepair signature:
|
0.00 | -2666.33 | 4 | 3 |
Pseudoknot geometry |
| 207 |
Motif group HL_33074.4
Basepair signature:
|
0.00 | -4017.00 | 7 | 7 |
U1 small nuclear ribonucleoprotein A binding hairpin |
| 208 |
Motif group HL_99324.1
Basepair signature:
|
0.00 | -4020.29 | 12 | 11 |
|
| 209 |
Motif group HL_85461.1
Basepair signature:
|
0.00 | -4026.21 | 14 | 13 |
|
| 210 |
Motif group HL_60293.1
Basepair signature:
|
0.00 | -4059.71 | 17 | 16 |
G-quadruplex |
| 211 |
Motif group HL_00317.1
Basepair signature:
|
0.00 | -4063.10 | 16 | 14 |
|
| 212 |
Motif group HL_21400.1
Basepair signature:
|
0.00 | -4065.61 | 19 | 17 |
G-quadruplex |
| 213 |
Motif group HL_35354.1
Basepair signature:
|
0.00 | -4076.76 | 20 | 18 |
|
| 214 |
Motif group HL_89346.1
Basepair signature:
|
0.00 | -4092.31 | 14 | 13 |
|
| 215 |
Motif group HL_59564.1
Basepair signature:
|
0.00 | -4100.23 | 16 | 14 |
|
| 216 |
Motif group HL_12758.3
Basepair signature:
|
0.00 | -4104.96 | 21 | 20 |
G-quadruplex |
| 217 |
Motif group HL_50851.1
Basepair signature:
|
0.00 | -4438.34 | 9 | 7 |
G-quadruplex fragment |
| 218 |
Motif group HL_73916.1
Basepair signature:
|
0.00 | -4656.67 | 33 | 33 |
|
| 219 |
Motif group HL_04725.1
Basepair signature:
|
0.00 | -4766.46 | 8 | 7 |
|
| 220 |
Motif group HL_24792.1
Basepair signature:
|
0.00 | -4774.60 | 7 | 5 |
|
| 221 |
Motif group HL_07903.1
Basepair signature:
|
0.00 | -4972.42 | 10 | 9 |
|
| 222 |
Motif group HL_31581.6
Basepair signature:
|
0.00 | -4980.72 | 7 | 7 |
|
| 223 |
Motif group HL_88364.2
Basepair signature:
|
0.00 | -5043.14 | 10 | 10 |
|
| 224 |
Motif group HL_63355.1
Basepair signature:
|
0.00 | -5043.26 | 10 | 9 |
|
| 225 |
Motif group HL_73183.1
Basepair signature:
|
0.00 | -5111.15 | 11 | 10 |
Pseudoknot geometry with G-bulge |
| 226 |
Motif group HL_67407.5
Basepair signature:
|
0.00 | -5145.79 | 6 | 5 |
|
| 227 |
Motif group HL_15118.1
Basepair signature:
|
0.00 | -5329.48 | 7 | 7 |
|
| 228 |
Motif group HL_81312.1
Basepair signature:
|
0.00 | -5386.85 | 8 | 7 |
|
| 229 |
Motif group HL_08510.1
Basepair signature:
|
0.00 | -5397.65 | 5 | 4 |
|
| 230 |
Motif group HL_94376.1
Basepair signature:
|
0.00 | -5402.53 | 7 | 6 |
Pseudoknot geometry |
| 231 |
Motif group HL_19210.3
Basepair signature:
|
0.00 | -5412.90 | 6 | 5 |
|
| 232 |
Motif group HL_38649.1
Basepair signature:
|
0.00 | -5543.15 | 7 | 6 |
|
| 233 |
Motif group HL_70751.1
Basepair signature:
|
0.00 | -5543.53 | 7 | 5 |
|
| 234 |
Motif group HL_55305.1
Basepair signature:
|
0.00 | -5559.23 | 8 | 7 |
|
| 235 |
Motif group HL_36684.4
Basepair signature:
|
0.00 | -5695.28 | 6 | 4 |
|
| 236 |
Motif group HL_01255.1
Basepair signature:
|
0.00 | -5707.34 | 8 | 7 |
|
| 237 |
Motif group HL_78284.1
Basepair signature:
|
0.00 | -5751.52 | 8 | 7 |
|
| 238 |
Motif group HL_55436.1
Basepair signature:
|
0.00 | -5770.11 | 5 | 4 |
|
| 239 |
Motif group HL_50418.1
Basepair signature:
|
0.00 | -5828.96 | 7 | 6 |
|
| 240 |
Motif group HL_68572.1
Basepair signature:
|
0.00 | -5931.95 | 9 | 8 |
|
| 241 |
Motif group HL_16398.2
Basepair signature:
|
0.00 | -5940.18 | 9 | 7 |
|
| 242 |
Motif group HL_74292.1
Basepair signature:
|
0.00 | -6093.85 | 7 | 6 |
|
| 243 |
Motif group HL_47732.1
Basepair signature:
|
0.00 | -6145.04 | 9 | 8 |
|
| 244 |
Motif group HL_64292.1
Basepair signature:
|
0.00 | -6209.20 | 11 | 10 |
|
| 245 |
Motif group HL_29958.1
Basepair signature:
|
0.00 | -6364.42 | 9 | 8 |
|
| 246 |
Motif group HL_99867.1
Basepair signature:
|
0.00 | -6747.71 | 6 | 5 |
|
| 247 |
Motif group HL_42998.2
Basepair signature:
|
0.00 | -7318.71 | 5 | 4 |
|
| 248 |
Motif group HL_20781.1
Basepair signature:
|
0.00 | -7387.78 | 8 | 7 |
|
| 249 |
Motif group HL_58539.1
Basepair signature:
|
0.00 | -8443.17 | 12 | 11 |
|
| 250 |
Motif group HL_97983.1
Basepair signature:
|
0.00 | -8556.23 | 7 | 5 |
|
| 251 |
Motif group HL_77600.2
Basepair signature:
|
0.00 | -9496.50 | 4 | 4 |
|
| 252 |
Motif group HL_07951.3
Basepair signature:
|
0.00 | -9999.00 | 6 | 5 |
tRNA D-loop |
| 253 |
Motif group HL_09260.2
Basepair signature:
|
0.00 | -9999.00 | 7 | 6 |
tRNA D-loop |