JAR3D
Query RF00230-3.98 completed
Run on Motif Atlas Version
using the Rfam secondary structure. Run with the CaCoFold secondary structure.
Loop 8 Hairpin loop
Column numbers: 90-107 - View nucleotides in PDB file(s)
Scored sequences and counts
CGGUU---GGUGAAA--G 3
UGGUU---AGUGUGA--A 2
UGGUU---GGUGUGA--A 2
AGUCGGAGACUGAAAGCU 1
GGUCUAUGGCUGAGAGCC 1
GUUCACAGGCUGAAAGAC 1
UGUCUUAGGCUGAAAACA 1
CCAUUUG-GCUGAAA--G 1
CUACUA--GCUGAAA-UG 1
CCGUUG--GCUGGAA--G 1
CGAUUU--GCUGAAA--G 1
GGAUA---GGUGGGA-GC 1
GGCUA---GCUGGGA-AC 1
GGGAA---GGUGUGA-GC 1
GGGUU---GGUGUAA-GC 1
UCACCG--GCUGAAA--G 1
UGAUUU--GGUGUGA--G 1
AGGAU---GGUGUGA--U 1
AGUUU---GGUGAAA--U 1
CAUUA---GCUGGGA--G 1
CCUAG---GCUGGGA--G 1
CGGUC---GGUGCGA--A 1
CGGUC---GGUGUAA--G 1
CGGUU---GGUGCAA--G 1
CGGUU---GGUGGGA--G 1
CGUUU---GGUGCGA--G 1
GGAC----GGUGAGA-GC 1
GGAU----GGUGGAA-GC 1
UAGUA---GCUGAGA--G 1
UGCUU---GGUGCAA--A 1
UGGAU---GGUGAAA--A 1
UGGUA---GCUGAAA--A 1
UGGUA---GGUGUGA--A 1
UGGUC---GGUGUGA--A 1
UGGUG---AUUGUGA--A 1
UGGUU---GCUGGAA--A 1
UGGUU---GGUGAAA--A 1
UGGUU---GGUGCAA--A 1
UGGUU---GGUGGAA--A 1
UGGUU---GGUGGGA--A 1
AAAU----GCUGGAA--G 1
CGGU----GGUGAGA--G 1
UGGU----UGUGCAA--A 1
--GUU---GCUGAGA--A 1
Click on headings to reorder table
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group HL_86109.1
Basepair signature:
|
18.75 | -39.20 | 6 | 4 |
|
| 2 |
Motif group HL_68572.1
Basepair signature:
|
6.25 | -44.36 | 6.5 | 5 |
|
| 3 |
Motif group HL_68767.1
Basepair signature:
|
4.17 | -49.16 | 7 | 5 |
tRNA D-loop |
| 4 |
Motif group HL_40252.4
Basepair signature:
|
4.17 | -59.53 | 6 | 4 |
|
| 5 |
Motif group HL_16991.1
Basepair signature:
|
4.17 | -65.13 | 7 | 6 |
G-quadruplex fragment |
| 6 |
Motif group HL_29958.1
Basepair signature:
|
2.08 | -73.98 | 7 | 5.5 |
|
| 7 |
Motif group HL_41543.1
Basepair signature:
|
2.08 | -84.86 | 7 | 6 |
|
| 8 |
Motif group HL_12870.1
Basepair signature:
|
2.08 | -1320.63 | 7 | 6 |
|
| 9 |
Motif group HL_70658.1
Basepair signature:
|
0.00 | -61.65 | 8 | 6.5 |
|
| 10 |
Motif group HL_07583.1
Basepair signature:
|
0.00 | -67.65 | 7 | 6 |
|
| 11 |
Motif group HL_05304.3
Basepair signature:
|
0.00 | -69.34 | 8 | 6 |
|
| 12 |
Motif group HL_11542.1
Basepair signature:
|
0.00 | -74.72 | 7 | 6 |
|
| 13 |
Motif group HL_20751.2
Basepair signature:
|
0.00 | -81.65 | 8 | 7 |
|
| 14 |
Motif group HL_98870.1
Basepair signature:
|
0.00 | -84.23 | 7 | 7 |
|
| 15 |
Motif group HL_02581.1
Basepair signature:
|
0.00 | -84.81 | 7 | 6 |
tRNA D-loop |
| 16 |
Motif group HL_78284.1
Basepair signature:
|
0.00 | -86.13 | 8 | 7 |
|
| 17 |
Motif group HL_08602.1
Basepair signature:
|
0.00 | -86.33 | 9 | 7 |
|
| 18 |
Motif group HL_99769.3
Basepair signature:
|
0.00 | -89.19 | 7 | 6 |
|
| 19 |
Motif group HL_91503.7
Basepair signature:
|
0.00 | -90.24 | 6 | 5 |
|
| 20 |
Motif group HL_02483.1
Basepair signature:
|
0.00 | -91.58 | 8 | 7 |
|
| 21 |
Motif group HL_50851.1
Basepair signature:
|
0.00 | -92.85 | 8 | 6.5 |
G-quadruplex fragment |
| 22 |
Motif group HL_73247.1
Basepair signature:
|
0.00 | -94.26 | 8 | 7 |
Pseudoknot geometry |
| 23 |
Motif group HL_74379.3
Basepair signature:
|
0.00 | -95.70 | 8 | 7 |
|
| 24 |
Motif group HL_69139.1
Basepair signature:
|
0.00 | -97.99 | 8 | 6 |
|
| 25 |
Motif group HL_53454.2
Basepair signature:
|
0.00 | -100.39 | 5 | 4 |
|
| 26 |
Motif group HL_31581.6
Basepair signature:
|
0.00 | -102.83 | 8 | 7 |
|
| 27 |
Motif group HL_68257.1
Basepair signature:
|
0.00 | -104.11 | 8 | 7 |
|
| 28 |
Motif group HL_63355.1
Basepair signature:
|
0.00 | -104.42 | 9 | 8 |
|
| 29 |
Motif group HL_01255.1
Basepair signature:
|
0.00 | -104.98 | 8 | 7 |
|
| 30 |
Motif group HL_49941.1
Basepair signature:
|
0.00 | -106.74 | 6 | 5 |
tRNA D-loop |
| 31 |
Motif group HL_23010.1
Basepair signature:
|
0.00 | -112.09 | 7.5 | 6 |
|
| 32 |
Motif group HL_07903.1
Basepair signature:
|
0.00 | -113.73 | 10 | 8 |
|
| 33 |
Motif group HL_41902.1
Basepair signature:
|
0.00 | -113.75 | 8 | 8 |
|
| 34 |
Motif group HL_91641.1
Basepair signature:
|
0.00 | -113.92 | 9 | 8 |
|
| 35 |
Motif group HL_04642.1
Basepair signature:
|
0.00 | -113.96 | 7 | 5 |
tRNA D-loop |
| 36 |
Motif group HL_88558.1
Basepair signature:
|
0.00 | -114.23 | 8 | 7 |
|
| 37 |
Motif group HL_16398.2
Basepair signature:
|
0.00 | -115.98 | 9 | 8 |
|
| 38 |
Motif group HL_29129.3
Basepair signature:
|
0.00 | -116.05 | 6 | 5 |
|
| 39 |
Motif group HL_81312.1
Basepair signature:
|
0.00 | -117.77 | 8 | 7 |
|
| 40 |
Motif group HL_89346.1
Basepair signature:
|
0.00 | -117.97 | 10.5 | 10 |
|
| 41 |
Motif group HL_74055.2
Basepair signature:
|
0.00 | -119.35 | 9 | 8 |
|
| 42 |
Motif group HL_91939.2
Basepair signature:
|
0.00 | -119.45 | 8 | 7 |
|
| 43 |
Motif group HL_15118.1
Basepair signature:
|
0.00 | -120.97 | 9 | 8 |
|
| 44 |
Motif group HL_38649.1
Basepair signature:
|
0.00 | -121.47 | 7 | 6 |
|
| 45 |
Motif group HL_81205.3
Basepair signature:
|
0.00 | -122.30 | 10 | 9 |
|
| 46 |
Motif group HL_58224.1
Basepair signature:
|
0.00 | -123.38 | 7 | 5 |
|
| 47 |
Motif group HL_73183.1
Basepair signature:
|
0.00 | -123.88 | 8 | 7 |
Pseudoknot geometry with G-bulge |
| 48 |
Motif group HL_55305.1
Basepair signature:
|
0.00 | -124.03 | 8 | 7.5 |
|
| 49 |
Motif group HL_94376.1
Basepair signature:
|
0.00 | -125.16 | 8 | 7 |
Pseudoknot geometry |
| 50 |
Motif group HL_07480.2
Basepair signature:
|
0.00 | -126.23 | 9 | 7 |
|
| 51 |
Motif group HL_18423.1
Basepair signature:
|
0.00 | -130.15 | 7 | 6 |
|
| 52 |
Motif group HL_93616.2
Basepair signature:
|
0.00 | -131.43 | 7 | 6 |
tRNA D-loop |
| 53 |
Motif group HL_06226.4
Basepair signature:
|
0.00 | -131.51 | 8 | 7 |
|
| 54 |
Motif group HL_67079.1
Basepair signature:
|
0.00 | -131.71 | 8 | 7 |
|
| 55 |
Motif group HL_84847.1
Basepair signature:
|
0.00 | -136.41 | 10 | 9 |
|
| 56 |
Motif group HL_64292.1
Basepair signature:
|
0.00 | -137.38 | 9 | 8 |
|
| 57 |
Motif group HL_89881.5
Basepair signature:
|
0.00 | -137.90 | 8 | 7 |
|
| 58 |
Motif group HL_60266.1
Basepair signature:
|
0.00 | -138.27 | 8 | 7 |
|
| 59 |
Motif group HL_34964.1
Basepair signature:
|
0.00 | -142.58 | 7 | 6 |
|
| 60 |
Motif group HL_18978.1
Basepair signature:
|
0.00 | -143.51 | 8 | 6 |
|
| 61 |
Motif group HL_04725.1
Basepair signature:
|
0.00 | -144.45 | 9 | 8 |
|
| 62 |
Motif group HL_88364.2
Basepair signature:
|
0.00 | -148.13 | 9 | 8 |
|
| 63 |
Motif group HL_33074.4
Basepair signature:
|
0.00 | -153.40 | 9 | 8 |
U1 small nuclear ribonucleoprotein A binding hairpin |
| 64 |
Motif group HL_66853.7
Basepair signature:
|
0.00 | -155.65 | 7 | 5 |
|
| 65 |
Motif group HL_90620.1
Basepair signature:
|
0.00 | -158.26 | 9 | 7 |
|
| 66 |
Motif group HL_23509.1
Basepair signature:
|
0.00 | -158.76 | 10 | 8 |
|
| 67 |
Motif group HL_98252.1
Basepair signature:
|
0.00 | -158.79 | 9 | 8 |
|
| 68 |
Motif group HL_25061.1
Basepair signature:
|
0.00 | -159.73 | 7 | 6 |
|
| 69 |
Motif group HL_45785.1
Basepair signature:
|
0.00 | -159.79 | 9 | 8 |
|
| 70 |
Motif group HL_87463.1
Basepair signature:
|
0.00 | -166.42 | 8 | 7 |
|
| 71 |
Motif group HL_01962.2
Basepair signature:
|
0.00 | -170.44 | 7 | 6 |
|
| 72 |
Motif group HL_85434.1
Basepair signature:
|
0.00 | -170.70 | 8 | 7 |
|
| 73 |
Motif group HL_10456.1
Basepair signature:
|
0.00 | -174.07 | 10.5 | 10 |
|
| 74 |
Motif group HL_98864.1
Basepair signature:
|
0.00 | -174.19 | 7 | 6 |
T-loop with unstacked turn |
| 75 |
Motif group HL_75293.5
Basepair signature:
|
0.00 | -177.31 | 6 | 5 |
|
| 76 |
Motif group HL_14757.1
Basepair signature:
|
0.00 | -178.26 | 11 | 10 |
|
| 77 |
Motif group HL_57863.1
Basepair signature:
|
0.00 | -180.81 | 8 | 7 |
G-quadruplex fragment |
| 78 |
Motif group HL_45175.1
Basepair signature:
|
0.00 | -181.74 | 6 | 5 |
tRNA D-loop |
| 79 |
Motif group HL_53504.3
Basepair signature:
|
0.00 | -184.16 | 7 | 6 |
|
| 80 |
Motif group HL_47732.1
Basepair signature:
|
0.00 | -187.74 | 9.5 | 8 |
|
| 81 |
Motif group HL_04641.1
Basepair signature:
|
0.00 | -194.94 | 9 | 8 |
|
| 82 |
Motif group HL_35677.3
Basepair signature:
|
0.00 | -195.61 | 7 | 6 |
|
| 83 |
Motif group HL_02887.3
Basepair signature:
|
0.00 | -197.88 | 9 | 9 |
T-loop with 3 stacked bulged bases |
| 84 |
Motif group HL_55436.1
Basepair signature:
|
0.00 | -199.55 | 7 | 6 |
|
| 85 |
Motif group HL_51921.1
Basepair signature:
|
0.00 | -202.97 | 12 | 11 |
|
| 86 |
Motif group HL_25847.2
Basepair signature:
|
0.00 | -212.07 | 8 | 7 |
|
| 87 |
Motif group HL_86012.1
Basepair signature:
|
0.00 | -214.16 | 8 | 7 |
T-loop with unstacked turn |
| 88 |
Motif group HL_13971.1
Basepair signature:
|
0.00 | -216.14 | 9 | 8 |
|
| 89 |
Motif group HL_83808.4
Basepair signature:
|
0.00 | -221.56 | 9 | 8 |
Pseudoknot |
| 90 |
Motif group HL_92488.1
Basepair signature:
|
0.00 | -222.96 | 11 | 10 |
|
| 91 |
Motif group HL_93438.2
Basepair signature:
|
0.00 | -229.43 | 7 | 7 |
|
| 92 |
Motif group HL_41464.2
Basepair signature:
|
0.00 | -241.00 | 6 | 6 |
|
| 93 |
Motif group HL_81545.2
Basepair signature:
|
0.00 | -241.24 | 8 | 7 |
|
| 94 |
Motif group HL_61996.2
Basepair signature:
|
0.00 | -241.61 | 7 | 6 |
|
| 95 |
Motif group HL_36335.1
Basepair signature:
|
0.00 | -244.28 | 9 | 8 |
|
| 96 |
Motif group HL_50860.2
Basepair signature:
|
0.00 | -247.75 | 7 | 6 |
|
| 97 |
Motif group HL_84299.4
Basepair signature:
|
0.00 | -259.26 | 7 | 6 |
|
| 98 |
Motif group HL_04171.7
Basepair signature:
|
0.00 | -265.71 | 8 | 6 |
|
| 99 |
Motif group HL_26934.1
Basepair signature:
|
0.00 | -271.33 | 8 | 7 |
|
| 100 |
Motif group HL_20743.5
Basepair signature:
|
0.00 | -271.79 | 7 | 6 |
|
| 101 |
Motif group HL_20167.2
Basepair signature:
|
0.00 | -271.99 | 7 | 6 |
|
| 102 |
Motif group HL_64690.6
Basepair signature:
|
0.00 | -275.73 | 7 | 6 |
|
| 103 |
Motif group HL_59564.1
Basepair signature:
|
0.00 | -276.49 | 12 | 12 |
|
| 104 |
Motif group HL_66482.1
Basepair signature:
|
0.00 | -278.75 | 9.5 | 8 |
|
| 105 |
Motif group HL_86769.4
Basepair signature:
|
0.00 | -281.82 | 7 | 6 |
|
| 106 |
Motif group HL_50537.6
Basepair signature:
|
0.00 | -292.13 | 7 | 6 |
tRNA anticodon loop with synthetase |
| 107 |
Motif group HL_06059.6
Basepair signature:
|
0.00 | -295.97 | 6 | 5 |
tRNA anticodon loop |
| 108 |
Motif group HL_20811.4
Basepair signature:
|
0.00 | -296.14 | 6 | 4 |
tRNA D-loop |
| 109 |
Motif group HL_28252.8
Basepair signature:
|
0.00 | -297.13 | 6 | 5.5 |
T-loop with 2 stacked bulged bases |
| 110 |
Motif group HL_48417.5
Basepair signature:
|
0.00 | -302.00 | 6 | 5 |
|
| 111 |
Motif group HL_77436.5
Basepair signature:
|
0.00 | -304.45 | 6 | 5 |
T-loop related |
| 112 |
Motif group HL_73266.9
Basepair signature:
|
0.00 | -312.77 | 7 | 6 |
|
| 113 |
Motif group HL_01609.3
Basepair signature:
|
0.00 | -344.02 | 6 | 6 |
T-loop with 2 bulged bases not stacked |
| 114 |
Motif group HL_20535.2
Basepair signature:
|
0.00 | -344.52 | 7 | 6 |
|
| 115 |
Motif group HL_77082.1
Basepair signature:
|
0.00 | -345.15 | 7 | 6 |
Pseudoknot geometry |
| 116 |
Motif group HL_81538.2
Basepair signature:
|
0.00 | -347.08 | 6 | 6 |
GNRA with tandem sheared |
| 117 |
Motif group HL_78347.4
Basepair signature:
|
0.00 | -360.87 | 7 | 6 |
|
| 118 |
Motif group HL_97756.2
Basepair signature:
|
0.00 | -366.13 | 9 | 8 |
|
| 119 |
Motif group HL_10540.1
Basepair signature:
|
0.00 | -370.22 | 7 | 6 |
|
| 120 |
Motif group HL_87553.1
Basepair signature:
|
0.00 | -394.40 | 8 | 7 |
|
| 121 |
Motif group HL_28075.1
Basepair signature:
|
0.00 | -407.86 | 8 | 7 |
|
| 122 |
Motif group HL_42046.2
Basepair signature:
|
0.00 | -425.12 | 7 | 6 |
|
| 123 |
Motif group HL_13529.1
Basepair signature:
|
0.00 | -438.28 | 9 | 9 |
|
| 124 |
Motif group HL_04783.2
Basepair signature:
|
0.00 | -471.06 | 7.5 | 7 |
|
| 125 |
Motif group HL_04259.3
Basepair signature:
|
0.00 | -499.77 | 7 | 6 |
GNRA with extra cWW |
| 126 |
Motif group HL_00317.1
Basepair signature:
|
0.00 | -501.38 | 12 | 12 |
|
| 127 |
Motif group HL_23115.1
Basepair signature:
|
0.00 | -537.37 | 7 | 6 |
tRNA D-loop |
| 128 |
Motif group HL_67407.5
Basepair signature:
|
0.00 | -538.34 | 7 | 6 |
|
| 129 |
Motif group HL_80411.1
Basepair signature:
|
0.00 | -575.89 | 8 | 7 |
tRNA D-loop |
| 130 |
Motif group HL_29762.1
Basepair signature:
|
0.00 | -576.05 | 7 | 6 |
|
| 131 |
Motif group HL_36684.4
Basepair signature:
|
0.00 | -581.62 | 6 | 5 |
|
| 132 |
Motif group HL_70751.1
Basepair signature:
|
0.00 | -582.88 | 8 | 7 |
|
| 133 |
Motif group HL_09260.2
Basepair signature:
|
0.00 | -591.53 | 6 | 6 |
tRNA D-loop |
| 134 |
Motif group HL_19210.3
Basepair signature:
|
0.00 | -597.66 | 8 | 6 |
|
| 135 |
Motif group HL_93135.1
Basepair signature:
|
0.00 | -609.47 | 8 | 7 |
Pseudoknot |
| 136 |
Motif group HL_50418.1
Basepair signature:
|
0.00 | -609.71 | 7.5 | 7 |
|
| 137 |
Motif group HL_80599.2
Basepair signature:
|
0.00 | -657.01 | 7 | 7 |
|
| 138 |
Motif group HL_97733.1
Basepair signature:
|
0.00 | -657.14 | 9 | 7 |
|
| 139 |
Motif group HL_15802.1
Basepair signature:
|
0.00 | -689.84 | 8 | 6 |
|
| 140 |
Motif group HL_37824.7
Basepair signature:
|
0.00 | -697.49 | 7 | 7 |
GNRA |
| 141 |
Motif group HL_73255.1
Basepair signature:
|
0.00 | -736.60 | 8 | 8 |
|
| 142 |
Motif group HL_88205.2
Basepair signature:
|
0.00 | -747.41 | 6 | 6 |
|
| 143 |
Motif group HL_18565.1
Basepair signature:
|
0.00 | -750.55 | 9 | 7 |
|
| 144 |
Motif group HL_32735.2
Basepair signature:
|
0.00 | -757.82 | 8 | 6 |
|
| 145 |
Motif group HL_33983.1
Basepair signature:
|
0.00 | -763.95 | 8 | 6.5 |
|
| 146 |
Motif group HL_85367.2
Basepair signature:
|
0.00 | -772.40 | 6.5 | 6 |
|
| 147 |
Motif group HL_20781.1
Basepair signature:
|
0.00 | -784.95 | 8 | 7 |
|
| 148 |
Motif group HL_38046.1
Basepair signature:
|
0.00 | -825.61 | 11 | 9 |
|
| 149 |
Motif group HL_80008.1
Basepair signature:
|
0.00 | -828.15 | 7 | 7 |
|
| 150 |
Motif group HL_50779.4
Basepair signature:
|
0.00 | -836.77 | 9 | 8 |
|
| 151 |
Motif group HL_83632.1
Basepair signature:
|
0.00 | -845.28 | 7 | 6 |
tRNA anticodon loop |
| 152 |
Motif group HL_72628.1
Basepair signature:
|
0.00 | -858.92 | 8.5 | 7 |
|
| 153 |
Motif group HL_58539.1
Basepair signature:
|
0.00 | -863.22 | 11 | 9 |
|
| 154 |
Motif group HL_07951.3
Basepair signature:
|
0.00 | -868.64 | 6 | 5 |
tRNA D-loop |
| 155 |
Motif group HL_38808.1
Basepair signature:
|
0.00 | -891.79 | 8 | 7 |
|
| 156 |
Motif group HL_74292.1
Basepair signature:
|
0.00 | -910.12 | 8 | 7 |
|
| 157 |
Motif group HL_24792.1
Basepair signature:
|
0.00 | -918.41 | 9 | 8 |
|
| 158 |
Motif group HL_21372.1
Basepair signature:
|
0.00 | -949.14 | 7 | 6 |
|
| 159 |
Motif group HL_27670.2
Basepair signature:
|
0.00 | -991.08 | 8 | 7 |
T-loop with unstacked turn |
| 160 |
Motif group HL_99867.1
Basepair signature:
|
0.00 | -995.77 | 6 | 5 |
|
| 161 |
Motif group HL_89567.2
Basepair signature:
|
0.00 | -1039.28 | 8 | 7 |
|
| 162 |
Motif group HL_10453.3
Basepair signature:
|
0.00 | -1042.82 | 7 | 6 |
tRNA anticodon loop |
| 163 |
Motif group HL_37369.2
Basepair signature:
|
0.00 | -1056.49 | 8 | 7 |
|
| 164 |
Motif group HL_25967.2
Basepair signature:
|
0.00 | -1065.24 | 8 | 8 |
|
| 165 |
Motif group HL_99324.1
Basepair signature:
|
0.00 | -1078.37 | 9 | 9 |
|
| 166 |
Motif group HL_78197.1
Basepair signature:
|
0.00 | -1126.36 | 7 | 6 |
|
| 167 |
Motif group HL_37344.1
Basepair signature:
|
0.00 | -1173.59 | 8 | 7 |
|
| 168 |
Motif group HL_56131.2
Basepair signature:
|
0.00 | -1219.26 | 7 | 6 |
|
| 169 |
Motif group HL_97917.2
Basepair signature:
|
0.00 | -1225.65 | 8 | 7 |
|
| 170 |
Motif group HL_93324.4
Basepair signature:
|
0.00 | -1231.81 | 6 | 6 |
Pseudoknot geometry |
| 171 |
Motif group HL_13963.3
Basepair signature:
|
0.00 | -1242.08 | 8 | 7 |
|
| 172 |
Motif group HL_80922.2
Basepair signature:
|
0.00 | -1245.55 | 8 | 7 |
|
| 173 |
Motif group HL_99748.1
Basepair signature:
|
0.00 | -1254.06 | 8 | 7 |
Other HL |
| 174 |
Motif group HL_31585.4
Basepair signature:
|
0.00 | -1266.76 | 7 | 6 |
Purine riboswitch |
| 175 |
Motif group HL_50006.2
Basepair signature:
|
0.00 | -1292.05 | 8 | 7 |
|
| 176 |
Motif group HL_07886.3
Basepair signature:
|
0.00 | -1317.63 | 8 | 7 |
|
| 177 |
Motif group HL_22584.6
Basepair signature:
|
0.00 | -1326.61 | 9 | 8 |
Fab BL3-6 binding hairpin with tSW |
| 178 |
Motif group HL_86870.2
Basepair signature:
|
0.00 | -1329.24 | 8 | 7 |
|
| 179 |
Motif group HL_47787.2
Basepair signature:
|
0.00 | -1341.17 | 8 | 7 |
|
| 180 |
Motif group HL_08100.1
Basepair signature:
|
0.00 | -1348.45 | 8 | 7 |
|
| 181 |
Motif group HL_93535.1
Basepair signature:
|
0.00 | -1374.16 | 8 | 7 |
|
| 182 |
Motif group HL_47854.1
Basepair signature:
|
0.00 | -1398.17 | 10 | 9 |
|
| 183 |
Motif group HL_62934.1
Basepair signature:
|
0.00 | -1404.00 | 9 | 8 |
|
| 184 |
Motif group HL_53890.2
Basepair signature:
|
0.00 | -1408.43 | 8 | 7 |
|
| 185 |
Motif group HL_59843.1
Basepair signature:
|
0.00 | -1412.97 | 8 | 8 |
|
| 186 |
Motif group HL_30068.2
Basepair signature:
|
0.00 | -1420.12 | 7.5 | 7 |
|
| 187 |
Motif group HL_49922.4
Basepair signature:
|
0.00 | -1422.57 | 8 | 8 |
|
| 188 |
Motif group HL_87954.2
Basepair signature:
|
0.00 | -1428.86 | 8 | 7 |
|
| 189 |
Motif group HL_02817.2
Basepair signature:
|
0.00 | -1449.05 | 8 | 7 |
|
| 190 |
Motif group HL_34617.5
Basepair signature:
|
0.00 | -1469.17 | 8 | 7 |
UNCG |
| 191 |
Motif group HL_00914.1
Basepair signature:
|
0.00 | -1475.10 | 8 | 7 |
|
| 192 |
Motif group HL_77600.2
Basepair signature:
|
0.00 | -1518.65 | 6 | 6 |
|
| 193 |
Motif group HL_30680.3
Basepair signature:
|
0.00 | -1693.69 | 8 | 7 |
Pseudoknot geometry |
| 194 |
Motif group HL_27483.1
Basepair signature:
|
0.00 | -1754.59 | 8 | 7 |
|
| 195 |
Motif group HL_15574.1
Basepair signature:
|
0.00 | -1820.53 | 9 | 8.5 |
|
| 196 |
Motif group HL_08510.1
Basepair signature:
|
0.00 | -1878.76 | 8 | 7 |
|
| 197 |
Motif group HL_71391.1
Basepair signature:
|
0.00 | -1882.86 | 8 | 7 |
|
| 198 |
Motif group HL_56676.1
Basepair signature:
|
0.00 | -1906.34 | 8 | 7 |
|
| 199 |
Motif group HL_80362.1
Basepair signature:
|
0.00 | -2292.13 | 10 | 9 |
|
| 200 |
Motif group HL_80241.1
Basepair signature:
|
0.00 | -2450.03 | 7 | 6 |
|
| 201 |
Motif group HL_97983.1
Basepair signature:
|
0.00 | -2686.04 | 9 | 7 |
|
| 202 |
Motif group HL_89893.1
Basepair signature:
|
0.00 | -2694.28 | 9 | 9 |
|
| 203 |
Motif group HL_09452.1
Basepair signature:
|
0.00 | -2724.22 | 7 | 7 |
|
| 204 |
Motif group HL_22622.1
Basepair signature:
|
0.00 | -2732.95 | 7.5 | 7 |
|
| 205 |
Motif group HL_73916.1
Basepair signature:
|
0.00 | -3403.51 | 28 | 27 |
|
| 206 |
Motif group HL_39243.1
Basepair signature:
|
0.00 | -3417.76 | 8 | 7 |
|
| 207 |
Motif group HL_66103.1
Basepair signature:
|
0.00 | -3450.31 | 8 | 7 |
|
| 208 |
Motif group HL_85461.1
Basepair signature:
|
0.00 | -3491.29 | 11 | 10 |
|
| 209 |
Motif group HL_50318.1
Basepair signature:
|
0.00 | -3496.24 | 8 | 7 |
|
| 210 |
Motif group HL_13189.1
Basepair signature:
|
0.00 | -3497.13 | 8 | 8 |
|
| 211 |
Motif group HL_43517.1
Basepair signature:
|
0.00 | -3501.17 | 8 | 8 |
|
| 212 |
Motif group HL_57875.1
Basepair signature:
|
0.00 | -3521.90 | 8 | 7 |
|
| 213 |
Motif group HL_82710.2
Basepair signature:
|
0.00 | -3530.12 | 8 | 7 |
|
| 214 |
Motif group HL_60293.1
Basepair signature:
|
0.00 | -3539.46 | 13 | 12 |
G-quadruplex |
| 215 |
Motif group HL_21400.1
Basepair signature:
|
0.00 | -3672.71 | 12 | 11 |
G-quadruplex |
| 216 |
Motif group HL_12758.3
Basepair signature:
|
0.00 | -3710.30 | 15 | 14 |
G-quadruplex |
| 217 |
Motif group HL_35354.1
Basepair signature:
|
0.00 | -3998.85 | 14 | 12 |
|
| 218 |
Motif group HL_93383.1
Basepair signature:
|
0.00 | -5781.62 | 9 | 8 |
|
| 219 |
Motif group HL_59330.1
Basepair signature:
|
0.00 | -5853.24 | 8 | 7 |
|
| 220 |
Motif group HL_42998.2
Basepair signature:
|
0.00 | -7364.36 | 7 | 6 |
|
| 221 |
Motif group HL_85993.1
Basepair signature:
|
0.00 | -7495.42 | 9 | 7 |
|
| 222 |
Motif group HL_51447.1
Basepair signature:
|
0.00 | -8039.17 | 9 | 8 |
|
| 223 |
Motif group HL_99040.1
Basepair signature:
|
0.00 | -8914.45 | 8 | 8 |
|
| 224 |
Motif group HL_67667.2
Basepair signature:
|
0.00 | -9317.29 | 9 | 8 |
|
| 225 |
Motif group HL_89199.2
Basepair signature:
|
0.00 | -9418.13 | 9 | 8 |
Mini UNCG |
| 226 |
Motif group HL_65794.5
Basepair signature:
|
0.00 | -9789.06 | 7 | 7 |
Pseudoknot geometry |
| 227 |
Motif group HL_38901.2
Basepair signature:
|
0.00 | -9797.80 | 7 | 7 |
tRNA D-loop |
| 228 |
Motif group HL_46501.1
Basepair signature:
|
0.00 | -9804.24 | 9 | 8 |
|
| 229 |
Motif group HL_32392.1
Basepair signature:
|
0.00 | -9847.06 | 8 | 8 |
|
| 230 |
Motif group HL_22135.1
Basepair signature:
|
0.00 | -9999.00 | 10 | 10 |
|
| 231 |
Motif group HL_26631.1
Basepair signature:
|
0.00 | -9999.00 | 9 | 9 |
|
| 232 |
Motif group HL_28791.1
Basepair signature:
|
0.00 | -9999.00 | 9 | 8 |
|
| 233 |
Motif group HL_29966.1
Basepair signature:
|
0.00 | -9999.00 | 10 | 9 |
|
| 234 |
Motif group HL_32346.4
Basepair signature:
|
0.00 | -9999.00 | 8 | 8 |
|
| 235 |
Motif group HL_35941.1
Basepair signature:
|
0.00 | -9999.00 | 10 | 9 |
|
| 236 |
Motif group HL_38168.1
Basepair signature:
|
0.00 | -9999.00 | 9 | 8 |
|
| 237 |
Motif group HL_48778.2
Basepair signature:
|
0.00 | -9999.00 | 8 | 8 |
Mini UNCG |
| 238 |
Motif group HL_52953.3
Basepair signature:
|
0.00 | -9999.00 | 8 | 7 |
|
| 239 |
Motif group HL_55195.3
Basepair signature:
|
0.00 | -9999.00 | 8 | 8 |
|
| 240 |
Motif group HL_56334.1
Basepair signature:
|
0.00 | -9999.00 | 8 | 7 |
Mini UNCG |
| 241 |
Motif group HL_57176.2
Basepair signature:
|
0.00 | -9999.00 | 8 | 7 |
Pseudoknot geometry with 3' bulge |
| 242 |
Motif group HL_59735.5
Basepair signature:
|
0.00 | -9999.00 | 9 | 8 |
|
| 243 |
Motif group HL_60914.1
Basepair signature:
|
0.00 | -9999.00 | 9 | 8 |
|
| 244 |
Motif group HL_65313.1
Basepair signature:
|
0.00 | -9999.00 | 9 | 8 |
|
| 245 |
Motif group HL_69752.2
Basepair signature:
|
0.00 | -9999.00 | 8 | 8 |
|
| 246 |
Motif group HL_70782.2
Basepair signature:
|
0.00 | -9999.00 | 8 | 8 |
|
| 247 |
Motif group HL_75660.5
Basepair signature:
|
0.00 | -9999.00 | 8 | 7 |
|
| 248 |
Motif group HL_76094.1
Basepair signature:
|
0.00 | -9999.00 | 10 | 10 |
|
| 249 |
Motif group HL_78677.1
Basepair signature:
|
0.00 | -9999.00 | 9 | 8 |
|
| 250 |
Motif group HL_80709.3
Basepair signature:
|
0.00 | -9999.00 | 8 | 8 |
|
| 251 |
Motif group HL_81100.2
Basepair signature:
|
0.00 | -9999.00 | 9 | 8 |
|
| 252 |
Motif group HL_86883.1
Basepair signature:
|
0.00 | -9999.00 | 9 | 9 |
|
| 253 |
Motif group HL_94980.1
Basepair signature:
|
0.00 | -9999.00 | 10 | 9 |
|