JAR3D
Query RF00230-CCF-3.98 completed
Run on Motif Atlas Version
using the Rfam secondary structure. Run with the CaCoFold secondary structure.
Loop 13 Hairpin loop
Column numbers: 181-202 - This loop does not map to nucleotides in a 3D structure with xyz coordinates.
Scored sequences and counts
UUA-----------------UU 3
--------------------AC 3
--------------------UU 3
--------------------AU 2
--------------------GU 2
GGUCGUUGUCGAUUGACGAUCC 1
UUUAUCUUUUAUAAAGAAG-AU 1
GUAUUUGUAUUUAUACU---AU 1
AAGAUAGUAUUUAU------CU 1
AUCUGCAUUAGUAG------AU 1
AAUCUUGUAU----------UC 1
ACUUUAAAAA----------GU 1
AUCUUAAUG-----------AU 1
CCUGUU--------------AA 1
CUUUUU--------------AU 1
AUAUA---------------CG 1
GAAUU---------------UC 1
AUAG----------------UU 1
AUU-----------------UU 1
UAA-----------------CA 1
UU------------------UU 1
A-------------------UU 1
--------------------AA 1
--------------------CU 1
--------------------UA 1
Omitted sequenced and counts
---------------------- 13
---------------------A 1
---------------------C 1
Click on headings to reorder table
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group HL_56131.2
Basepair signature:
|
21.21 | -1091.26 | 3 | 2 |
|
| 2 |
Motif group HL_32346.4
Basepair signature:
|
21.21 | -6813.47 | 3 | 2 |
|
| 3 |
Motif group HL_56334.1
Basepair signature:
|
21.21 | -6825.05 | 3 | 2 |
Mini UNCG |
| 4 |
Motif group HL_75660.5
Basepair signature:
|
21.21 | -6841.38 | 3 | 2 |
|
| 5 |
Motif group HL_86870.2
Basepair signature:
|
18.18 | -5301.95 | 4 | 2 |
|
| 6 |
Motif group HL_48778.2
Basepair signature:
|
18.18 | -6498.28 | 2 | 1 |
Mini UNCG |
| 7 |
Motif group HL_76094.1
Basepair signature:
|
15.15 | -3352.51 | 4 | 2 |
|
| 8 |
Motif group HL_69752.2
Basepair signature:
|
15.15 | -6860.85 | 4 | 2 |
|
| 9 |
Motif group HL_53890.2
Basepair signature:
|
12.12 | -5263.40 | 4 | 3 |
|
| 10 |
Motif group HL_70782.2
Basepair signature:
|
12.12 | -6513.15 | 4 | 2 |
|
| 11 |
Motif group HL_48417.5
Basepair signature:
|
9.09 | -815.15 | 4 | 2 |
|
| 12 |
Motif group HL_57875.1
Basepair signature:
|
9.09 | -5855.18 | 4 | 3 |
|
| 13 |
Motif group HL_38901.2
Basepair signature:
|
9.09 | -5859.65 | 4 | 2 |
tRNA D-loop |
| 14 |
Motif group HL_78677.1
Basepair signature:
|
9.09 | -6833.87 | 3 | 2 |
|
| 15 |
Motif group HL_29966.1
Basepair signature:
|
9.09 | -7143.55 | 5 | 3 |
|
| 16 |
Motif group HL_13189.1
Basepair signature:
|
6.06 | -1731.06 | 4 | 2 |
|
| 17 |
Motif group HL_46501.1
Basepair signature:
|
6.06 | -1745.97 | 4 | 2 |
|
| 18 |
Motif group HL_94980.1
Basepair signature:
|
6.06 | -2998.83 | 4 | 2 |
|
| 19 |
Motif group HL_28075.1
Basepair signature:
|
6.06 | -4222.01 | 6 | 5 |
|
| 20 |
Motif group HL_99748.1
Basepair signature:
|
6.06 | -4632.72 | 6 | 5 |
Other HL |
| 21 |
Motif group HL_04783.2
Basepair signature:
|
6.06 | -5307.10 | 4 | 2 |
|
| 22 |
Motif group HL_50006.2
Basepair signature:
|
6.06 | -5846.93 | 5 | 3 |
|
| 23 |
Motif group HL_43517.1
Basepair signature:
|
6.06 | -5862.61 | 4 | 3 |
|
| 24 |
Motif group HL_38168.1
Basepair signature:
|
6.06 | -6860.97 | 4 | 3 |
|
| 25 |
Motif group HL_26631.1
Basepair signature:
|
6.06 | -7136.30 | 4 | 2 |
|
| 26 |
Motif group HL_81100.2
Basepair signature:
|
6.06 | -7378.83 | 5 | 4 |
|
| 27 |
Motif group HL_26934.1
Basepair signature:
|
3.03 | -559.05 | 6 | 5 |
|
| 28 |
Motif group HL_78347.4
Basepair signature:
|
3.03 | -575.43 | 4 | 3 |
|
| 29 |
Motif group HL_37344.1
Basepair signature:
|
3.03 | -1360.25 | 6 | 4 |
|
| 30 |
Motif group HL_30068.2
Basepair signature:
|
3.03 | -1557.38 | 5 | 4 |
|
| 31 |
Motif group HL_27483.1
Basepair signature:
|
3.03 | -1735.46 | 4 | 2 |
|
| 32 |
Motif group HL_32392.1
Basepair signature:
|
3.03 | -1775.18 | 4 | 3 |
|
| 33 |
Motif group HL_77082.1
Basepair signature:
|
3.03 | -4151.34 | 6 | 5 |
Pseudoknot geometry |
| 34 |
Motif group HL_33983.1
Basepair signature:
|
3.03 | -4277.09 | 7 | 6 |
|
| 35 |
Motif group HL_25967.2
Basepair signature:
|
3.03 | -4333.95 | 5 | 4 |
|
| 36 |
Motif group HL_42046.2
Basepair signature:
|
3.03 | -4375.58 | 5 | 4 |
|
| 37 |
Motif group HL_50537.6
Basepair signature:
|
3.03 | -4678.62 | 6 | 5 |
tRNA anticodon loop with synthetase |
| 38 |
Motif group HL_07886.3
Basepair signature:
|
3.03 | -5260.26 | 4 | 3 |
|
| 39 |
Motif group HL_80922.2
Basepair signature:
|
3.03 | -5354.23 | 5 | 4 |
|
| 40 |
Motif group HL_82710.2
Basepair signature:
|
3.03 | -5886.79 | 4 | 3 |
|
| 41 |
Motif group HL_66103.1
Basepair signature:
|
3.03 | -5894.66 | 5 | 4 |
|
| 42 |
Motif group HL_31585.4
Basepair signature:
|
3.03 | -5903.09 | 5 | 4 |
Purine riboswitch |
| 43 |
Motif group HL_62934.1
Basepair signature:
|
3.03 | -5968.32 | 5 | 4 |
|
| 44 |
Motif group HL_57176.2
Basepair signature:
|
3.03 | -6839.07 | 4 | 3 |
Pseudoknot geometry with 3' bulge |
| 45 |
Motif group HL_35941.1
Basepair signature:
|
3.03 | -6860.17 | 4 | 3 |
|
| 46 |
Motif group HL_80709.3
Basepair signature:
|
3.03 | -7129.33 | 4 | 2 |
|
| 47 |
Motif group HL_65313.1
Basepair signature:
|
3.03 | -7147.95 | 5 | 4 |
|
| 48 |
Motif group HL_86883.1
Basepair signature:
|
3.03 | -7160.89 | 4 | 3 |
|
| 49 |
Motif group HL_60914.1
Basepair signature:
|
3.03 | -7195.41 | 5 | 3 |
|
| 50 |
Motif group HL_59735.5
Basepair signature:
|
3.03 | -7455.72 | 5 | 4 |
|
| 51 |
Motif group HL_39243.1
Basepair signature:
|
3.03 | -7805.43 | 5 | 4 |
|
| 52 |
Motif group HL_52953.3
Basepair signature:
|
3.03 | -8703.86 | 4 | 3 |
|
| 53 |
Motif group HL_41543.1
Basepair signature:
|
0.00 | -228.53 | 9 | 8 |
|
| 54 |
Motif group HL_67079.1
Basepair signature:
|
0.00 | -235.59 | 8 | 8 |
|
| 55 |
Motif group HL_81545.2
Basepair signature:
|
0.00 | -235.77 | 8 | 7 |
|
| 56 |
Motif group HL_93438.2
Basepair signature:
|
0.00 | -239.68 | 8 | 7 |
|
| 57 |
Motif group HL_50860.2
Basepair signature:
|
0.00 | -239.80 | 7 | 6 |
|
| 58 |
Motif group HL_41902.1
Basepair signature:
|
0.00 | -247.02 | 11 | 9 |
|
| 59 |
Motif group HL_20167.2
Basepair signature:
|
0.00 | -253.45 | 7 | 6 |
|
| 60 |
Motif group HL_61996.2
Basepair signature:
|
0.00 | -258.73 | 7 | 6 |
|
| 61 |
Motif group HL_08602.1
Basepair signature:
|
0.00 | -263.24 | 10 | 10 |
|
| 62 |
Motif group HL_07583.1
Basepair signature:
|
0.00 | -267.19 | 10 | 10 |
|
| 63 |
Motif group HL_74055.2
Basepair signature:
|
0.00 | -279.06 | 12 | 11 |
|
| 64 |
Motif group HL_86769.4
Basepair signature:
|
0.00 | -282.18 | 6 | 5 |
|
| 65 |
Motif group HL_36335.1
Basepair signature:
|
0.00 | -288.12 | 9 | 7 |
|
| 66 |
Motif group HL_14757.1
Basepair signature:
|
0.00 | -308.22 | 13 | 13 |
|
| 67 |
Motif group HL_53504.3
Basepair signature:
|
0.00 | -308.62 | 8 | 7 |
|
| 68 |
Motif group HL_68767.1
Basepair signature:
|
0.00 | -312.75 | 11 | 10 |
tRNA D-loop |
| 69 |
Motif group HL_41464.2
Basepair signature:
|
0.00 | -314.06 | 7 | 6 |
|
| 70 |
Motif group HL_04171.7
Basepair signature:
|
0.00 | -326.86 | 8 | 8 |
|
| 71 |
Motif group HL_86012.1
Basepair signature:
|
0.00 | -345.67 | 7 | 6 |
T-loop with unstacked turn |
| 72 |
Motif group HL_68257.1
Basepair signature:
|
0.00 | -375.38 | 9 | 8 |
|
| 73 |
Motif group HL_20743.5
Basepair signature:
|
0.00 | -425.67 | 7 | 6 |
|
| 74 |
Motif group HL_13971.1
Basepair signature:
|
0.00 | -492.59 | 11 | 10 |
|
| 75 |
Motif group HL_92488.1
Basepair signature:
|
0.00 | -525.82 | 13 | 12 |
|
| 76 |
Motif group HL_04259.3
Basepair signature:
|
0.00 | -693.19 | 6 | 5 |
GNRA with extra cWW |
| 77 |
Motif group HL_13529.1
Basepair signature:
|
0.00 | -765.64 | 5 | 4 |
|
| 78 |
Motif group HL_97756.2
Basepair signature:
|
0.00 | -779.27 | 12 | 11 |
|
| 79 |
Motif group HL_88205.2
Basepair signature:
|
0.00 | -898.89 | 8 | 7 |
|
| 80 |
Motif group HL_37824.7
Basepair signature:
|
0.00 | -958.23 | 4 | 3 |
GNRA |
| 81 |
Motif group HL_18565.1
Basepair signature:
|
0.00 | -995.48 | 7 | 6 |
|
| 82 |
Motif group HL_45175.1
Basepair signature:
|
0.00 | -1001.35 | 7 | 6 |
tRNA D-loop |
| 83 |
Motif group HL_50318.1
Basepair signature:
|
0.00 | -1865.43 | 6 | 5 |
|
| 84 |
Motif group HL_51921.1
Basepair signature:
|
0.00 | -2038.90 | 16 | 16 |
|
| 85 |
Motif group HL_81205.3
Basepair signature:
|
0.00 | -2079.99 | 11 | 11 |
|
| 86 |
Motif group HL_73247.1
Basepair signature:
|
0.00 | -2107.09 | 12 | 11 |
Pseudoknot geometry |
| 87 |
Motif group HL_59843.1
Basepair signature:
|
0.00 | -2136.22 | 5 | 4 |
|
| 88 |
Motif group HL_56676.1
Basepair signature:
|
0.00 | -2136.61 | 4 | 3 |
|
| 89 |
Motif group HL_86109.1
Basepair signature:
|
0.00 | -2165.58 | 11 | 10 |
|
| 90 |
Motif group HL_91641.1
Basepair signature:
|
0.00 | -2189.58 | 13 | 12 |
|
| 91 |
Motif group HL_84847.1
Basepair signature:
|
0.00 | -2193.93 | 11 | 10 |
|
| 92 |
Motif group HL_98870.1
Basepair signature:
|
0.00 | -2212.55 | 12 | 11 |
|
| 93 |
Motif group HL_02887.3
Basepair signature:
|
0.00 | -2232.89 | 8 | 7 |
T-loop with 3 stacked bulged bases |
| 94 |
Motif group HL_74379.3
Basepair signature:
|
0.00 | -2265.87 | 10 | 9 |
|
| 95 |
Motif group HL_23509.1
Basepair signature:
|
0.00 | -2297.25 | 9 | 9 |
|
| 96 |
Motif group HL_70658.1
Basepair signature:
|
0.00 | -2299.30 | 10 | 10 |
|
| 97 |
Motif group HL_16991.1
Basepair signature:
|
0.00 | -2310.47 | 10 | 9 |
G-quadruplex fragment |
| 98 |
Motif group HL_02581.1
Basepair signature:
|
0.00 | -2313.19 | 13 | 11 |
tRNA D-loop |
| 99 |
Motif group HL_98864.1
Basepair signature:
|
0.00 | -2316.41 | 8 | 7 |
T-loop with unstacked turn |
| 100 |
Motif group HL_91939.2
Basepair signature:
|
0.00 | -2435.93 | 9 | 8 |
|
| 101 |
Motif group HL_49941.1
Basepair signature:
|
0.00 | -2440.88 | 9 | 8 |
tRNA D-loop |
| 102 |
Motif group HL_02483.1
Basepair signature:
|
0.00 | -2464.33 | 10 | 9 |
|
| 103 |
Motif group HL_18978.1
Basepair signature:
|
0.00 | -2465.17 | 8 | 7 |
|
| 104 |
Motif group HL_06226.4
Basepair signature:
|
0.00 | -2467.50 | 9 | 8 |
|
| 105 |
Motif group HL_45785.1
Basepair signature:
|
0.00 | -2507.19 | 9 | 8 |
|
| 106 |
Motif group HL_90620.1
Basepair signature:
|
0.00 | -2507.53 | 9 | 8 |
|
| 107 |
Motif group HL_05304.3
Basepair signature:
|
0.00 | -2536.54 | 9 | 9 |
|
| 108 |
Motif group HL_89881.5
Basepair signature:
|
0.00 | -2581.15 | 9 | 8 |
|
| 109 |
Motif group HL_01962.2
Basepair signature:
|
0.00 | -2625.12 | 9 | 8 |
|
| 110 |
Motif group HL_18423.1
Basepair signature:
|
0.00 | -2633.22 | 9 | 8 |
|
| 111 |
Motif group HL_40252.4
Basepair signature:
|
0.00 | -2678.68 | 9 | 8 |
|
| 112 |
Motif group HL_83808.4
Basepair signature:
|
0.00 | -2680.04 | 7 | 6 |
Pseudoknot |
| 113 |
Motif group HL_04642.1
Basepair signature:
|
0.00 | -2715.25 | 8 | 7 |
tRNA D-loop |
| 114 |
Motif group HL_60266.1
Basepair signature:
|
0.00 | -2740.50 | 9 | 8 |
|
| 115 |
Motif group HL_24792.1
Basepair signature:
|
0.00 | -2780.02 | 8 | 7 |
|
| 116 |
Motif group HL_66482.1
Basepair signature:
|
0.00 | -2784.04 | 14 | 13 |
|
| 117 |
Motif group HL_10456.1
Basepair signature:
|
0.00 | -2786.10 | 15 | 14 |
|
| 118 |
Motif group HL_66853.7
Basepair signature:
|
0.00 | -2797.48 | 7 | 6 |
|
| 119 |
Motif group HL_07480.2
Basepair signature:
|
0.00 | -2824.09 | 9 | 8 |
|
| 120 |
Motif group HL_98252.1
Basepair signature:
|
0.00 | -2843.60 | 8 | 8 |
|
| 121 |
Motif group HL_28252.8
Basepair signature:
|
0.00 | -2854.40 | 7 | 6 |
T-loop with 2 stacked bulged bases |
| 122 |
Motif group HL_57863.1
Basepair signature:
|
0.00 | -2855.25 | 7 | 6 |
G-quadruplex fragment |
| 123 |
Motif group HL_89346.1
Basepair signature:
|
0.00 | -2936.56 | 14 | 14 |
|
| 124 |
Motif group HL_87463.1
Basepair signature:
|
0.00 | -2979.74 | 8 | 7 |
|
| 125 |
Motif group HL_23010.1
Basepair signature:
|
0.00 | -3042.85 | 9 | 8 |
|
| 126 |
Motif group HL_22135.1
Basepair signature:
|
0.00 | -3049.01 | 5 | 3 |
|
| 127 |
Motif group HL_73266.9
Basepair signature:
|
0.00 | -3078.28 | 7 | 6 |
|
| 128 |
Motif group HL_75293.5
Basepair signature:
|
0.00 | -3079.24 | 8 | 7 |
|
| 129 |
Motif group HL_33074.4
Basepair signature:
|
0.00 | -3111.67 | 10 | 9 |
U1 small nuclear ribonucleoprotein A binding hairpin |
| 130 |
Motif group HL_85434.1
Basepair signature:
|
0.00 | -3190.27 | 8 | 7 |
|
| 131 |
Motif group HL_53454.2
Basepair signature:
|
0.00 | -3296.60 | 8 | 7 |
|
| 132 |
Motif group HL_59564.1
Basepair signature:
|
0.00 | -3302.37 | 16 | 16 |
|
| 133 |
Motif group HL_58224.1
Basepair signature:
|
0.00 | -3329.09 | 8 | 7 |
|
| 134 |
Motif group HL_20751.2
Basepair signature:
|
0.00 | -3341.30 | 11 | 10 |
|
| 135 |
Motif group HL_93616.2
Basepair signature:
|
0.00 | -3346.61 | 9 | 8 |
tRNA D-loop |
| 136 |
Motif group HL_80599.2
Basepair signature:
|
0.00 | -3380.93 | 7 | 6 |
|
| 137 |
Motif group HL_99769.3
Basepair signature:
|
0.00 | -3384.73 | 9 | 8 |
|
| 138 |
Motif group HL_15802.1
Basepair signature:
|
0.00 | -3400.24 | 7 | 6 |
|
| 139 |
Motif group HL_25847.2
Basepair signature:
|
0.00 | -3425.99 | 9 | 8 |
|
| 140 |
Motif group HL_34964.1
Basepair signature:
|
0.00 | -3456.03 | 8 | 8 |
|
| 141 |
Motif group HL_99324.1
Basepair signature:
|
0.00 | -3456.56 | 13 | 12 |
|
| 142 |
Motif group HL_84299.4
Basepair signature:
|
0.00 | -3461.03 | 7 | 6 |
|
| 143 |
Motif group HL_85461.1
Basepair signature:
|
0.00 | -3463.62 | 16 | 15 |
|
| 144 |
Motif group HL_04641.1
Basepair signature:
|
0.00 | -3483.89 | 9 | 7 |
|
| 145 |
Motif group HL_00317.1
Basepair signature:
|
0.00 | -3502.42 | 16 | 16 |
|
| 146 |
Motif group HL_60293.1
Basepair signature:
|
0.00 | -3509.12 | 18 | 17 |
G-quadruplex |
| 147 |
Motif group HL_21400.1
Basepair signature:
|
0.00 | -3516.25 | 19 | 18 |
G-quadruplex |
| 148 |
Motif group HL_11542.1
Basepair signature:
|
0.00 | -3543.10 | 12 | 10 |
|
| 149 |
Motif group HL_73255.1
Basepair signature:
|
0.00 | -3555.30 | 8 | 7 |
|
| 150 |
Motif group HL_12758.3
Basepair signature:
|
0.00 | -3577.47 | 23 | 21 |
G-quadruplex |
| 151 |
Motif group HL_32735.2
Basepair signature:
|
0.00 | -3614.18 | 7 | 6 |
|
| 152 |
Motif group HL_73183.1
Basepair signature:
|
0.00 | -3669.09 | 13 | 12 |
Pseudoknot geometry with G-bulge |
| 153 |
Motif group HL_88558.1
Basepair signature:
|
0.00 | -3716.17 | 10 | 9 |
|
| 154 |
Motif group HL_64690.6
Basepair signature:
|
0.00 | -3716.24 | 7 | 6 |
|
| 155 |
Motif group HL_50851.1
Basepair signature:
|
0.00 | -3804.58 | 10 | 9 |
G-quadruplex fragment |
| 156 |
Motif group HL_07903.1
Basepair signature:
|
0.00 | -3849.39 | 11 | 10 |
|
| 157 |
Motif group HL_35354.1
Basepair signature:
|
0.00 | -3856.97 | 19 | 19 |
|
| 158 |
Motif group HL_01609.3
Basepair signature:
|
0.00 | -3885.91 | 6 | 5 |
T-loop with 2 bulged bases not stacked |
| 159 |
Motif group HL_25061.1
Basepair signature:
|
0.00 | -3889.73 | 7 | 6 |
|
| 160 |
Motif group HL_63355.1
Basepair signature:
|
0.00 | -3904.35 | 12 | 10 |
|
| 161 |
Motif group HL_88364.2
Basepair signature:
|
0.00 | -3904.38 | 11 | 11 |
|
| 162 |
Motif group HL_29129.3
Basepair signature:
|
0.00 | -3920.27 | 8 | 7 |
|
| 163 |
Motif group HL_31581.6
Basepair signature:
|
0.00 | -3992.18 | 9 | 9 |
|
| 164 |
Motif group HL_23115.1
Basepair signature:
|
0.00 | -4004.82 | 9 | 8 |
tRNA D-loop |
| 165 |
Motif group HL_91503.7
Basepair signature:
|
0.00 | -4012.22 | 9 | 8 |
|
| 166 |
Motif group HL_04725.1
Basepair signature:
|
0.00 | -4077.51 | 9 | 9 |
|
| 167 |
Motif group HL_97983.1
Basepair signature:
|
0.00 | -4079.56 | 7 | 6 |
|
| 168 |
Motif group HL_73916.1
Basepair signature:
|
0.00 | -4090.35 | 35 | 35 |
|
| 169 |
Motif group HL_59330.1
Basepair signature:
|
0.00 | -4115.29 | 7 | 5 |
|
| 170 |
Motif group HL_06059.6
Basepair signature:
|
0.00 | -4121.17 | 7 | 6 |
tRNA anticodon loop |
| 171 |
Motif group HL_67407.5
Basepair signature:
|
0.00 | -4134.91 | 9 | 8 |
|
| 172 |
Motif group HL_89567.2
Basepair signature:
|
0.00 | -4135.09 | 6 | 5 |
|
| 173 |
Motif group HL_81312.1
Basepair signature:
|
0.00 | -4142.73 | 9 | 8 |
|
| 174 |
Motif group HL_67667.2
Basepair signature:
|
0.00 | -4165.86 | 5 | 4 |
|
| 175 |
Motif group HL_80411.1
Basepair signature:
|
0.00 | -4209.49 | 9 | 8 |
tRNA D-loop |
| 176 |
Motif group HL_29762.1
Basepair signature:
|
0.00 | -4245.44 | 9 | 8 |
|
| 177 |
Motif group HL_77436.5
Basepair signature:
|
0.00 | -4250.96 | 5 | 4 |
T-loop related |
| 178 |
Motif group HL_16398.2
Basepair signature:
|
0.00 | -4253.06 | 11 | 10 |
|
| 179 |
Motif group HL_69139.1
Basepair signature:
|
0.00 | -4270.79 | 8 | 7 |
|
| 180 |
Motif group HL_19210.3
Basepair signature:
|
0.00 | -4335.27 | 8 | 7 |
|
| 181 |
Motif group HL_97733.1
Basepair signature:
|
0.00 | -4338.19 | 9 | 7 |
|
| 182 |
Motif group HL_93383.1
Basepair signature:
|
0.00 | -4364.58 | 7 | 6 |
|
| 183 |
Motif group HL_01255.1
Basepair signature:
|
0.00 | -4394.56 | 10 | 9 |
|
| 184 |
Motif group HL_87553.1
Basepair signature:
|
0.00 | -4416.82 | 5 | 4 |
|
| 185 |
Motif group HL_35677.3
Basepair signature:
|
0.00 | -4426.12 | 7 | 6 |
|
| 186 |
Motif group HL_78284.1
Basepair signature:
|
0.00 | -4428.84 | 10 | 9 |
|
| 187 |
Motif group HL_55305.1
Basepair signature:
|
0.00 | -4445.52 | 9 | 9 |
|
| 188 |
Motif group HL_93135.1
Basepair signature:
|
0.00 | -4453.92 | 9 | 8 |
Pseudoknot |
| 189 |
Motif group HL_64292.1
Basepair signature:
|
0.00 | -4477.24 | 12 | 12 |
|
| 190 |
Motif group HL_38649.1
Basepair signature:
|
0.00 | -4492.19 | 9 | 9 |
|
| 191 |
Motif group HL_37369.2
Basepair signature:
|
0.00 | -4528.78 | 6 | 4 |
|
| 192 |
Motif group HL_81538.2
Basepair signature:
|
0.00 | -4555.36 | 6 | 5 |
GNRA with tandem sheared |
| 193 |
Motif group HL_15118.1
Basepair signature:
|
0.00 | -4579.43 | 10 | 9 |
|
| 194 |
Motif group HL_50779.4
Basepair signature:
|
0.00 | -4580.07 | 8 | 7 |
|
| 195 |
Motif group HL_10540.1
Basepair signature:
|
0.00 | -4602.09 | 6 | 5 |
|
| 196 |
Motif group HL_94376.1
Basepair signature:
|
0.00 | -4645.65 | 9 | 8 |
Pseudoknot geometry |
| 197 |
Motif group HL_47732.1
Basepair signature:
|
0.00 | -4738.52 | 10 | 9 |
|
| 198 |
Motif group HL_89893.1
Basepair signature:
|
0.00 | -4796.37 | 6 | 5 |
|
| 199 |
Motif group HL_20811.4
Basepair signature:
|
0.00 | -4809.41 | 5 | 3 |
tRNA D-loop |
| 200 |
Motif group HL_55436.1
Basepair signature:
|
0.00 | -4853.48 | 8 | 7 |
|
| 201 |
Motif group HL_08510.1
Basepair signature:
|
0.00 | -4870.81 | 7 | 6 |
|
| 202 |
Motif group HL_85367.2
Basepair signature:
|
0.00 | -4901.44 | 6 | 5 |
|
| 203 |
Motif group HL_47854.1
Basepair signature:
|
0.00 | -4906.02 | 7 | 6 |
|
| 204 |
Motif group HL_29958.1
Basepair signature:
|
0.00 | -4924.17 | 11 | 10 |
|
| 205 |
Motif group HL_68572.1
Basepair signature:
|
0.00 | -4930.42 | 11 | 11 |
|
| 206 |
Motif group HL_27670.2
Basepair signature:
|
0.00 | -4950.11 | 6 | 5 |
T-loop with unstacked turn |
| 207 |
Motif group HL_22584.6
Basepair signature:
|
0.00 | -4967.58 | 5 | 3 |
Fab BL3-6 binding hairpin with tSW |
| 208 |
Motif group HL_80008.1
Basepair signature:
|
0.00 | -5010.38 | 7 | 6 |
|
| 209 |
Motif group HL_21372.1
Basepair signature:
|
0.00 | -5028.10 | 7 | 6 |
|
| 210 |
Motif group HL_72628.1
Basepair signature:
|
0.00 | -5049.12 | 7 | 6 |
|
| 211 |
Motif group HL_10453.3
Basepair signature:
|
0.00 | -5064.94 | 5 | 4 |
tRNA anticodon loop |
| 212 |
Motif group HL_70751.1
Basepair signature:
|
0.00 | -5091.92 | 9 | 8 |
|
| 213 |
Motif group HL_38046.1
Basepair signature:
|
0.00 | -5224.03 | 7 | 6 |
|
| 214 |
Motif group HL_74292.1
Basepair signature:
|
0.00 | -5226.15 | 9 | 7 |
|
| 215 |
Motif group HL_36684.4
Basepair signature:
|
0.00 | -5233.92 | 9 | 8 |
|
| 216 |
Motif group HL_13963.3
Basepair signature:
|
0.00 | -5251.21 | 5 | 3 |
|
| 217 |
Motif group HL_02817.2
Basepair signature:
|
0.00 | -5269.18 | 6 | 5 |
|
| 218 |
Motif group HL_85993.1
Basepair signature:
|
0.00 | -5272.33 | 6 | 5 |
|
| 219 |
Motif group HL_50418.1
Basepair signature:
|
0.00 | -5350.69 | 9 | 8 |
|
| 220 |
Motif group HL_49922.4
Basepair signature:
|
0.00 | -5363.66 | 4 | 3 |
|
| 221 |
Motif group HL_83632.1
Basepair signature:
|
0.00 | -5471.95 | 7 | 6 |
tRNA anticodon loop |
| 222 |
Motif group HL_38808.1
Basepair signature:
|
0.00 | -5498.12 | 7 | 6 |
|
| 223 |
Motif group HL_80362.1
Basepair signature:
|
0.00 | -5529.22 | 8 | 6 |
|
| 224 |
Motif group HL_00914.1
Basepair signature:
|
0.00 | -5539.01 | 7 | 5 |
|
| 225 |
Motif group HL_97917.2
Basepair signature:
|
0.00 | -5549.24 | 6 | 4 |
|
| 226 |
Motif group HL_20535.2
Basepair signature:
|
0.00 | -5552.42 | 6 | 5 |
|
| 227 |
Motif group HL_93535.1
Basepair signature:
|
0.00 | -5588.94 | 5 | 3 |
|
| 228 |
Motif group HL_34617.5
Basepair signature:
|
0.00 | -5712.41 | 4 | 3 |
UNCG |
| 229 |
Motif group HL_51447.1
Basepair signature:
|
0.00 | -5747.23 | 5 | 4 |
|
| 230 |
Motif group HL_08100.1
Basepair signature:
|
0.00 | -5789.40 | 5 | 4 |
|
| 231 |
Motif group HL_99867.1
Basepair signature:
|
0.00 | -5796.12 | 8 | 7 |
|
| 232 |
Motif group HL_20781.1
Basepair signature:
|
0.00 | -5903.01 | 9 | 8 |
|
| 233 |
Motif group HL_71391.1
Basepair signature:
|
0.00 | -5975.10 | 4 | 3 |
|
| 234 |
Motif group HL_87954.2
Basepair signature:
|
0.00 | -5990.51 | 5 | 4 |
|
| 235 |
Motif group HL_12870.1
Basepair signature:
|
0.00 | -6069.20 | 11 | 10 |
|
| 236 |
Motif group HL_47787.2
Basepair signature:
|
0.00 | -6109.65 | 4 | 3 |
|
| 237 |
Motif group HL_89199.2
Basepair signature:
|
0.00 | -6298.34 | 4 | 3 |
Mini UNCG |
| 238 |
Motif group HL_15574.1
Basepair signature:
|
0.00 | -6537.37 | 6 | 5 |
|
| 239 |
Motif group HL_42998.2
Basepair signature:
|
0.00 | -6604.29 | 6 | 5 |
|
| 240 |
Motif group HL_22622.1
Basepair signature:
|
0.00 | -6608.96 | 6 | 5 |
|
| 241 |
Motif group HL_80241.1
Basepair signature:
|
0.00 | -6613.74 | 7 | 6 |
|
| 242 |
Motif group HL_09452.1
Basepair signature:
|
0.00 | -6623.82 | 6 | 5 |
|
| 243 |
Motif group HL_30680.3
Basepair signature:
|
0.00 | -6838.52 | 5 | 4 |
Pseudoknot geometry |
| 244 |
Motif group HL_77600.2
Basepair signature:
|
0.00 | -7070.29 | 7 | 6 |
|
| 245 |
Motif group HL_78197.1
Basepair signature:
|
0.00 | -7096.89 | 6 | 5 |
|
| 246 |
Motif group HL_55195.3
Basepair signature:
|
0.00 | -7206.33 | 4 | 2 |
|
| 247 |
Motif group HL_99040.1
Basepair signature:
|
0.00 | -7294.20 | 5 | 4 |
|
| 248 |
Motif group HL_93324.4
Basepair signature:
|
0.00 | -7475.50 | 6 | 5 |
Pseudoknot geometry |
| 249 |
Motif group HL_58539.1
Basepair signature:
|
0.00 | -7542.44 | 13 | 12 |
|
| 250 |
Motif group HL_65794.5
Basepair signature:
|
0.00 | -7781.80 | 4 | 3 |
Pseudoknot geometry |
| 251 |
Motif group HL_28791.1
Basepair signature:
|
0.00 | -8733.88 | 5 | 4 |
|
| 252 |
Motif group HL_07951.3
Basepair signature:
|
0.00 | -9999.00 | 7 | 6 |
tRNA D-loop |
| 253 |
Motif group HL_09260.2
Basepair signature:
|
0.00 | -9999.00 | 9 | 8 |
tRNA D-loop |