RNA 3D Hub

JAR3D Query RF00230-CCF-3.98 completed
Run on Motif Atlas Version using the Rfam secondary structure. Run with the CaCoFold secondary structure.

Rfam family RF00230 maps to these 12 chains: 4LCK|1|C, 4LCK|1|F, 4TZP|1|C, 4TZP|1|F, 4TZV|1|C, 4TZW|1|C, 4TZZ|1|C, 4TZZ|1|F, 4TZZ|1|I, 4TZZ|1|L, 6PMO|1|A, 6POM|1|A See more about them at RNA 3D Hub by filtering on the chain or the Rfam family.

Loop 14 Hairpin loop

Column numbers: 221-235 - This loop does not map to nucleotides in a 3D structure with xyz coordinates. 
    Scored sequences and counts

    
    AUUAGGCCU---UAU    2

    
    GUAGUUUA----UAC    2

    
    GCCGC-------UUC    2

    
    GGUUC-------CGC    2

    
    GUGAU-------AAC    2

    
    UUAG--------CUG    2

    
    GUAGAUCUCGUCUAU    1

    
    UUUUUAUUAC--UUG    1

    
    GAGUAAUU----CCA    1

    
    GGAAUCCG----GCC    1

    
    CACAUUU-----AAG    1

    
    GAUUAGU-----ACA    1

    
    GUCAAAU-----GAU    1

    
    GUCAGAU-----GAU    1

    
    GCUGUC------CCC    1

    
    GUGUUG------AGC    1

    
    GUUAUA------GAC    1

    
    UCAAAA------ACG    1

    
    GAUCG-------CUC    1

    
    GAUCU-------UUC    1

    
    GAUUU-------GUC    1

    
    GGAGC-------UCC    1

    
    GGUGC-------UCC    1

    
    GGUUC-------GCC    1

    
    GUAGG-------AAC    1

    
    GUCAU-------GUC    1

    
    GUGAC-------GAC    1

    
    UAAGC-------ACA    1

    
    UAAUC-------UCG    1

    
    UAUUC-------AGG    1

    
    UGCGC-------ACA    1

    
    UGUUU-------GAG    1

    
    UUCGC-------CUG    1

    
    UUUAC-------CCG    1

    
    UUUAC-------CUA    1

    
    GUAG--------CUC    1

    
    GUAG--------UUA    1

    
    UAUC--------CCG    1

    
    UUAA--------CUG    1

    
    UUUU--------CCG    1

    
    ------------AA-    1

    
    Omitted sequenced and counts

    
    ---------------    1
Click on headings to reorder table
# Matching motif group Acceptance Rate Mean Cutoff Score Full Edit Distance Interior Edit Distance Basepair Diagram and most common annotation
1

Motif group HL_22622.1

Basepair signature:
cWW-F-F-F-F-F

14.89 -445.18 5 4

2

Motif group HL_13529.1

Basepair signature:
cWW-F-F-F-F

10.64 -106.02 5 4

3

Motif group HL_64690.6

Basepair signature:
cWW-cSW-F-F-F-F

10.64 -240.39 4 4

4

Motif group HL_50537.6

Basepair signature:
cWW-F-F-F

10.64 -258.59 5 4

tRNA anticodon loop with synthetase

5

Motif group HL_77082.1

Basepair signature:
cWW-F-F-F-F-F-F

10.64 -282.87 4 3

Pseudoknot geometry

6

Motif group HL_78197.1

Basepair signature:
cWW-F-F-F-F-F-F

10.64 -303.69 4 3

7

Motif group HL_50006.2

Basepair signature:
cWW-F-F

10.64 -324.12 4 4

8

Motif group HL_09452.1

Basepair signature:
cWW-F-F-F

10.64 -447.71 5 4

9

Motif group HL_04259.3

Basepair signature:
cWW-F-F-F-F-F-F

8.51 -146.48 5 4

GNRA with extra cWW

10

Motif group HL_27670.2

Basepair signature:
cWW-tWH-F-F

8.51 -258.65 4 4

T-loop with unstacked turn

11

Motif group HL_20535.2

Basepair signature:
cWW-F-F-F-F

8.51 -292.57 4 4

12

Motif group HL_29762.1

Basepair signature:
cWW-F-F-F-F-F

6.38 -208.04 6 5

13

Motif group HL_38046.1

Basepair signature:
cWW-F-F-F-F-F-F

6.38 -215.94 6 5

14

Motif group HL_01609.3

Basepair signature:
cWW-tWH-F-F-F

6.38 -276.37 4 3

T-loop with 2 bulged bases not stacked

15

Motif group HL_42046.2

Basepair signature:
cWW-tSS-F-F-F

6.38 -313.71 5 4

16

Motif group HL_87553.1

Basepair signature:
cWW-F-F-F-F-F

6.38 -315.73 4 3

17

Motif group HL_31585.4

Basepair signature:
cWW-F-F-F-F-F

6.38 -326.28 4 3

Purine riboswitch

18

Motif group HL_20167.2

Basepair signature:
cWW-F-F-F-F-F-F

4.26 -78.48 4 4

19

Motif group HL_18565.1

Basepair signature:
cWW-cWW-F-F-F-F

4.26 -79.90 6 5

20

Motif group HL_68257.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F

4.26 -80.47 6 6

21

Motif group HL_67079.1

Basepair signature:
cWW-F-F-F-F-F-F-F

4.26 -88.70 6 5

22

Motif group HL_41464.2

Basepair signature:
cWW-F-F-F-F-F

4.26 -101.40 5 4

23

Motif group HL_48417.5

Basepair signature:
cWW-F-F

4.26 -115.01 4 3

24

Motif group HL_15802.1

Basepair signature:
cWW-cWW-F-F-F

4.26 -206.50 7 5

25

Motif group HL_99769.3

Basepair signature:
cWW-cWW-F-F-F-F

4.26 -208.10 6 5

26

Motif group HL_98252.1

Basepair signature:
cWW-tWW-F-F-F-F

4.26 -208.52 7 6

27

Motif group HL_33983.1

Basepair signature:
cWW-F-F-F-F-F

4.26 -218.36 6 5

28

Motif group HL_25061.1

Basepair signature:
cWW-F-F-F-F

4.26 -230.19 6 5

29

Motif group HL_85367.2

Basepair signature:
cWW-F-F-F-F-F-F

4.26 -240.14 5 4

30

Motif group HL_83632.1

Basepair signature:
cWW-F-F-F-F-F-F

4.26 -247.02 5 4

tRNA anticodon loop

31

Motif group HL_80008.1

Basepair signature:
cWW-F-F-F-cSH-F

4.26 -258.30 6 5

32

Motif group HL_21372.1

Basepair signature:
cWW-F-cSH-F-F

4.26 -272.41 5 4

33

Motif group HL_25967.2

Basepair signature:
cWW-cWW-F-F-F

4.26 -284.17 4 4

34

Motif group HL_28075.1

Basepair signature:
cWW-F-F-F-F-F

4.26 -305.21 5 4

35

Motif group HL_93324.4

Basepair signature:
cWW-F-F-F-F-F-F

4.26 -335.28 3 3

Pseudoknot geometry

36

Motif group HL_80362.1

Basepair signature:
cWW-F-F-F

4.26 -374.29 6 5

37

Motif group HL_99748.1

Basepair signature:
cWW-F-F-cSH

4.26 -409.06 6 4

Other HL

38

Motif group HL_51447.1

Basepair signature:
cWW-F-F-F-F-F

4.26 -966.70 5 4

39

Motif group HL_69752.2

Basepair signature:
cWW-F

4.26 -1286.30 5 3

40

Motif group HL_94376.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F-F

4.26 -3581.62 6 6

Pseudoknot geometry

41

Motif group HL_86012.1

Basepair signature:
cWW-tWH-F-F-F-F

2.13 -65.30 5 4

T-loop with unstacked turn

42

Motif group HL_26934.1

Basepair signature:
cWW-F-F-F-F-F-F

2.13 -66.55 5 4

43

Motif group HL_86769.4

Basepair signature:
cWW-cWW-cSH-F

2.13 -86.74 5 4

44

Motif group HL_50860.2

Basepair signature:
cWW-F-cWH-F-F-F-F

2.13 -97.48 5 5

45

Motif group HL_30068.2

Basepair signature:
cWW-F-F-F-F

2.13 -157.21 4 3

46

Motif group HL_04641.1

Basepair signature:
cWW-F-F-F-F-F

2.13 -206.28 7 5

47

Motif group HL_38808.1

Basepair signature:
cWW-cWW

2.13 -229.45 6 4

48

Motif group HL_73255.1

Basepair signature:
cWW-F-F-F-F-F-F

2.13 -240.21 6 5

49

Motif group HL_75293.5

Basepair signature:
cWW-F-F-F-F-F-F-F-F

2.13 -247.97 5 5

50

Motif group HL_53454.2

Basepair signature:
cWW-tSH-F-F-F-F-F

2.13 -268.25 6 5

51

Motif group HL_97917.2

Basepair signature:
cWW-F-F-F-F

2.13 -318.22 4 4

52

Motif group HL_81538.2

Basepair signature:
cWW-tSH-F-F-F-F

2.13 -321.69 4 3

GNRA with tandem sheared

53

Motif group HL_04783.2

Basepair signature:
cWW-F-F-F

2.13 -362.63 4 4

54

Motif group HL_47787.2

Basepair signature:
cWW-F-F-F-F

2.13 -390.93 4 3

55

Motif group HL_87954.2

Basepair signature:
cWW-tSW-F

2.13 -397.87 4 3

56

Motif group HL_47854.1

Basepair signature:
cWW-F-F-F-F

2.13 -464.46 6 5

57

Motif group HL_59330.1

Basepair signature:
cWW-F-F-F-F-F

2.13 -467.72 6 4

58

Motif group HL_30680.3

Basepair signature:
cWW-F-F-F-F-F

2.13 -554.11 3 3

Pseudoknot geometry

59

Motif group HL_67667.2

Basepair signature:
cWW-F-F

2.13 -943.38 5 4

60

Motif group HL_08510.1

Basepair signature:
cWW-F-F-cSH-F-F

2.13 -1176.57 6 4

61

Motif group HL_70782.2

Basepair signature:
cWW-F

2.13 -1263.16 4 4

62

Motif group HL_59735.5

Basepair signature:
cWW-F-F-F-F-F

2.13 -1282.87 5 4

63

Motif group HL_48778.2

Basepair signature:
cWW-F

2.13 -1335.02 4 3

Mini UNCG

64

Motif group HL_42998.2

Basepair signature:
cWW-F-F-F-F-F-F

2.13 -1801.45 5 4

65

Motif group HL_93438.2

Basepair signature:
cWW-F-F-F-F-F-F-F-F

0.00 -82.67 5 4

66

Motif group HL_45175.1

Basepair signature:
cWW-cWS-F-F

0.00 -85.20 6 5

tRNA D-loop

67

Motif group HL_41543.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F

0.00 -88.18 6 6

68

Motif group HL_81545.2

Basepair signature:
cWW-tWH-F-F-F-F

0.00 -94.09 5 4

69

Motif group HL_20743.5

Basepair signature:
cWW-cWW-F-F-F-F

0.00 -96.34 5 4

70

Motif group HL_61996.2

Basepair signature:
cWW-tWH-F-F-F

0.00 -97.87 5 4

71

Motif group HL_78347.4

Basepair signature:
cWW-F-F-F-F

0.00 -111.94 4 3

72

Motif group HL_04171.7

Basepair signature:
cWW-cWW-F-F-F-F-F-F

0.00 -113.85 6 5

73

Motif group HL_36335.1

Basepair signature:
cWW-F-F-cSS-cSS-F

0.00 -119.52 8 6

74

Motif group HL_56131.2

Basepair signature:
cWW-F-F

0.00 -122.31 4 4

75

Motif group HL_37344.1

Basepair signature:
cWW-F-F

0.00 -123.49 6 4

76

Motif group HL_41902.1

Basepair signature:
cWW-cWW-cWH-F-F-F-F-F

0.00 -130.01 8 8

77

Motif group HL_07583.1

Basepair signature:
cWW-cWW-F-F-F-F-F-F-F-F

0.00 -138.24 8 7

78

Motif group HL_08602.1

Basepair signature:
cWW-cSS-F-cSS-F-F-F-F-F

0.00 -144.70 8 7

79

Motif group HL_53504.3

Basepair signature:
cWW-tSH-F-F-F-F-F-F

0.00 -147.74 6 5

80

Motif group HL_88205.2

Basepair signature:
cWW-cWS-tSW-F-F

0.00 -175.70 5 5

81

Motif group HL_98864.1

Basepair signature:
cWW-tWH-F-F-F-F-F-F

0.00 -177.08 5 5

T-loop with unstacked turn

82

Motif group HL_83808.4

Basepair signature:
cWW-tWW-F-F-F

0.00 -178.14 6 5

Pseudoknot

83

Motif group HL_68767.1

Basepair signature:
cWW-cWS-tSH-cWS-F

0.00 -179.02 8 7

tRNA D-loop

84

Motif group HL_13971.1

Basepair signature:
cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F

0.00 -180.25 9 8

85

Motif group HL_74055.2

Basepair signature:
cWW-tWH-cWH-tSH-tHW-tHW-tSW

0.00 -181.63 9 8

86

Motif group HL_18978.1

Basepair signature:
cWW-F-F-tHW-F-F-F

0.00 -181.98 6 5

87

Motif group HL_02887.3

Basepair signature:
cWW-tWH-F-F-F-F-F-F

0.00 -184.25 6 5

T-loop with 3 stacked bulged bases

88

Motif group HL_89881.5

Basepair signature:
cWW-tHW-F-F-F-F-F-F

0.00 -189.44 5 5

89

Motif group HL_04642.1

Basepair signature:
cWW-F-F-F-F-F

0.00 -190.58 6 5

tRNA D-loop

90

Motif group HL_57863.1

Basepair signature:
cWW-F-F-cWH-cWH-F

0.00 -192.39 6 5

G-quadruplex fragment

91

Motif group HL_59843.1

Basepair signature:
cWW-F-F-F-F

0.00 -193.51 5 4

92

Motif group HL_85434.1

Basepair signature:
cWW-cWW-F-F-F-F-F-F

0.00 -194.53 6 5

93

Motif group HL_58224.1

Basepair signature:
cWW-F-F-F-F-F

0.00 -195.86 6 5

94

Motif group HL_87463.1

Basepair signature:
cWW-cWW-F-F-F-F-F

0.00 -196.90 6 5

95

Motif group HL_45785.1

Basepair signature:
cWW-F-F-F-F-cSH-F-F

0.00 -201.70 7 6

96

Motif group HL_80599.2

Basepair signature:
cWW-F-F-F-F-F-F-F

0.00 -203.79 6 4

97

Motif group HL_66853.7

Basepair signature:
cWW-cWS-F-cSH

0.00 -206.27 6 4

98

Motif group HL_97733.1

Basepair signature:
cWW-F-F-F-cSH-F

0.00 -210.56 7 6

99

Motif group HL_02483.1

Basepair signature:
cWW-tWH-F-cSH-F-F-F

0.00 -210.90 7 6

100

Motif group HL_06226.4

Basepair signature:
cWW-F-F-F-F-F-F-F

0.00 -215.37 6 6

101

Motif group HL_16991.1

Basepair signature:
cWW-cWH-cWH-F-cWH-F

0.00 -218.38 8 7

G-quadruplex fragment

102

Motif group HL_74379.3

Basepair signature:
cWW-F-F-cSS-cSS-F-F-F

0.00 -220.42 7 7

103

Motif group HL_93135.1

Basepair signature:
cWW-F-F-F-F-F-F

0.00 -221.27 7 5

Pseudoknot

104

Motif group HL_91503.7

Basepair signature:
cWW-F-F-F-F-F-F-F

0.00 -223.51 6 6

105

Motif group HL_37824.7

Basepair signature:
cWW-F-F-F-F

0.00 -224.04 3 3

GNRA

106

Motif group HL_23509.1

Basepair signature:
cSH-F-F-F-F-F-F-F-F-F

0.00 -225.16 7 7

107

Motif group HL_49941.1

Basepair signature:
cWW-F-F-F-F-F

0.00 -225.31 7 5

tRNA D-loop

108

Motif group HL_29129.3

Basepair signature:
cWW-tWH-F-F-F-F

0.00 -225.61 6 6

109

Motif group HL_23115.1

Basepair signature:
cWW-F-F-F-F-F

0.00 -227.82 7 6

tRNA D-loop

110

Motif group HL_18423.1

Basepair signature:
cWW-tSH-tHS-F

0.00 -232.31 6 6

111

Motif group HL_80411.1

Basepair signature:
cWW-F-cSH-F-F-F-F

0.00 -232.91 8 6

tRNA D-loop

112

Motif group HL_35677.3

Basepair signature:
cWW-F-F-F-F-F-F-F

0.00 -234.09 5 4

113

Motif group HL_91939.2

Basepair signature:
cWW-tSH-tHH-tWW-F-F-F

0.00 -235.94 7 6

114

Motif group HL_70658.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F-F

0.00 -238.05 8 7

115

Motif group HL_23010.1

Basepair signature:
cWW-F-F-F-F-F-F

0.00 -238.07 8 6

116

Motif group HL_69139.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F

0.00 -238.57 7 6

117

Motif group HL_84299.4

Basepair signature:
cWW-F-F-F-F-F-F

0.00 -240.50 4 4

118

Motif group HL_93616.2

Basepair signature:
cWW-cWS-F-F-F-F

0.00 -240.54 7 6

tRNA D-loop

119

Motif group HL_05304.3

Basepair signature:
cWW-cWW-F-F-tSH-F-F-F-F-F

0.00 -240.57 7 6

120

Motif group HL_88558.1

Basepair signature:
cWW-tSH-F-F-F-F-F-F-F

0.00 -248.98 8 6

121

Motif group HL_40252.4

Basepair signature:
cWW-tSH-cWS-F

0.00 -249.69 7 6

122

Motif group HL_01962.2

Basepair signature:
cWW-tWH-tWH-F

0.00 -251.19 6 5

123

Motif group HL_32735.2

Basepair signature:
cWW-tSH-F-F-F-F-F

0.00 -253.11 5 4

124

Motif group HL_07480.2

Basepair signature:
cWW-tSH-F-F-F

0.00 -253.80 8 6

125

Motif group HL_90620.1

Basepair signature:
cWW-F-F-F-F-cSW-cSH-F

0.00 -255.31 8 6

126

Motif group HL_28252.8

Basepair signature:
cWW-tWH-F-F-F-F-F

0.00 -258.71 4 3

T-loop with 2 stacked bulged bases

127

Motif group HL_86109.1

Basepair signature:
cWW-F-tWH-F-F-F-F-F-F-F

0.00 -259.13 8 8

128

Motif group HL_25847.2

Basepair signature:
cWW-F-cSH-tHW-F-F-F

0.00 -260.21 6 5

129

Motif group HL_60266.1

Basepair signature:
cWW-cWW-tWH-F-F-F-F

0.00 -272.87 7 6

130

Motif group HL_84847.1

Basepair signature:
cWW-F-F-F-F-tWW-F-F-F-F-F-F

0.00 -273.47 8 8

131

Motif group HL_81205.3

Basepair signature:
cWW-cWW-tWH-F-tWH-F-F-F-F-F

0.00 -274.00 9 8

132

Motif group HL_34964.1

Basepair signature:
cWW-F-F-F-F-F

0.00 -275.08 6 5

133

Motif group HL_72628.1

Basepair signature:
cWW-tSH-F-F-F-F

0.00 -275.28 6 5

134

Motif group HL_73266.9

Basepair signature:
cWW-F-F-cSW-cSH-F

0.00 -277.10 5 5

135

Motif group HL_14757.1

Basepair signature:
cWW-cWW-F-F-tSW-tWW-cWW-tHW-tSW-F-cWH-F

0.00 -280.47 12 11

136

Motif group HL_11542.1

Basepair signature:
cWW-tSH-F-F-F-F-F-F

0.00 -286.61 9 8

137

Motif group HL_10453.3

Basepair signature:
cWW-F-F-F-F-F

0.00 -287.22 4 3

tRNA anticodon loop

138

Motif group HL_20751.2

Basepair signature:
cWW-tHW-F-F-F-F-F-F-F-F-F

0.00 -288.52 9 8

139

Motif group HL_06059.6

Basepair signature:
cWW-F-F-F-F-F-F-F

0.00 -300.40 4 3

tRNA anticodon loop

140

Motif group HL_73247.1

Basepair signature:
cWW-F-tWH-F-F-F-F-F-F-F-F-F-F

0.00 -301.02 10 8

Pseudoknot geometry

141

Motif group HL_97756.2

Basepair signature:
cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F

0.00 -303.36 9 8

142

Motif group HL_02581.1

Basepair signature:
cWW-tSH-cWS-tSW-F-F-F

0.00 -308.56 10 9

tRNA D-loop

143

Motif group HL_98870.1

Basepair signature:
cWW-tSH-tWW-F-F-F-F-F

0.00 -308.76 10 9

144

Motif group HL_89567.2

Basepair signature:
cWW-F-F-F

0.00 -323.56 5 4

145

Motif group HL_77436.5

Basepair signature:
cWW-F-F-F-F-F

0.00 -324.11 4 3

T-loop related

146

Motif group HL_37369.2

Basepair signature:
cWW-tSH-F-F-F

0.00 -327.37 5 4

147

Motif group HL_91641.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F-cSW-F-F-F-F

0.00 -340.79 12 10

148

Motif group HL_10540.1

Basepair signature:
cWW-F-F-F-F-F

0.00 -342.61 6 5

149

Motif group HL_10456.1

Basepair signature:
cWW-F-cWW-tWW-F-tHW-F-F-F-F-F-F-F

0.00 -350.22 13 12

150

Motif group HL_80922.2

Basepair signature:
cWW-tSH-F

0.00 -359.52 5 4

151

Motif group HL_20811.4

Basepair signature:
cWW-cWS-F

0.00 -361.91 5 4

tRNA D-loop

152

Motif group HL_13963.3

Basepair signature:
cWW-F-F

0.00 -362.34 5 4

153

Motif group HL_50318.1

Basepair signature:
cWW-cSH-F-F

0.00 -362.82 6 4

154

Motif group HL_92488.1

Basepair signature:
cWW-cWW-F-cSS-F-F-F-F-F-F

0.00 -368.01 11 10

155

Motif group HL_66482.1

Basepair signature:
cWW-cWW-tWW-F-F-tWH-F-F-F-F-F-F-F-F

0.00 -368.69 12 11

156

Motif group HL_86870.2

Basepair signature:
cWW-F-F-F

0.00 -375.05 4 4

157

Motif group HL_53890.2

Basepair signature:
cWW-F-F-F

0.00 -376.36 4 3

158

Motif group HL_08100.1

Basepair signature:
cWW-F-F-F

0.00 -380.63 5 3

159

Motif group HL_93535.1

Basepair signature:
cWW-F-F-F-F

0.00 -384.72 5 4

160

Motif group HL_22584.6

Basepair signature:
cWW-tSW-F

0.00 -392.30 4 4

Fab BL3-6 binding hairpin with tSW

161

Motif group HL_51921.1

Basepair signature:
cWW-tSH-tSS-tHS-F-F-F-F-F-F-F-F-F-F-F

0.00 -392.47 14 13

162

Motif group HL_27483.1

Basepair signature:
cWW-F

0.00 -393.87 5 4

163

Motif group HL_07886.3

Basepair signature:
cWW-F-F-F

0.00 -394.11 5 4

164

Motif group HL_13189.1

Basepair signature:
cWW-F-F

0.00 -399.84 5 4

165

Motif group HL_62934.1

Basepair signature:
cWW-tSH-F

0.00 -404.98 5 4

166

Motif group HL_49922.4

Basepair signature:
cWW-F-F-F

0.00 -414.04 4 4

167

Motif group HL_56676.1

Basepair signature:
cWW-F-F

0.00 -446.02 5 4

168

Motif group HL_34617.5

Basepair signature:
cWW-tSW-F

0.00 -465.28 4 3

UNCG

169

Motif group HL_89893.1

Basepair signature:
cWW-F-F-F-F

0.00 -466.85 6 4

170

Motif group HL_02817.2

Basepair signature:
cWW-F-F-F-F

0.00 -477.13 5 4

171

Motif group HL_00914.1

Basepair signature:
cWW-F-F-F-F

0.00 -497.03 5 5

172

Motif group HL_39243.1

Basepair signature:
cWW-F-F-F-F

0.00 -562.18 5 4

173

Motif group HL_66103.1

Basepair signature:
cWW-F-F

0.00 -581.50 5 3

174

Motif group HL_15574.1

Basepair signature:
cWW-F-F-F-F-F

0.00 -603.03 5 4

175

Motif group HL_43517.1

Basepair signature:
cWW-F-F-F

0.00 -617.91 4 3

176

Motif group HL_57875.1

Basepair signature:
cWW-F-F

0.00 -621.57 4 3

177

Motif group HL_85993.1

Basepair signature:
cWW-F-F-F-F-F

0.00 -621.76 6 5

178

Motif group HL_82710.2

Basepair signature:
cWW-F-F-F

0.00 -650.97 4 4

179

Motif group HL_46501.1

Basepair signature:
cWW-cWS

0.00 -661.69 5 4

180

Motif group HL_32392.1

Basepair signature:
cWW-F-F

0.00 -662.17 5 4

181

Motif group HL_71391.1

Basepair signature:
cWW-F-F-F-F

0.00 -671.34 4 4

182

Motif group HL_33074.4

Basepair signature:
cWW-F-F-F-F-F-F-F-F

0.00 -791.25 7 6

U1 small nuclear ribonucleoprotein A binding hairpin

183

Motif group HL_65794.5

Basepair signature:
cWW-F-F-F-F

0.00 -828.51 4 3

Pseudoknot geometry

184

Motif group HL_89346.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F

0.00 -867.55 13 12

185

Motif group HL_38901.2

Basepair signature:
cWW-F-cSH

0.00 -879.45 4 4

tRNA D-loop

186

Motif group HL_67407.5

Basepair signature:
cWW-F-F-F-F-F-F-F-F

0.00 -950.23 6 5

187

Motif group HL_19210.3

Basepair signature:
cWW-F-F-F-F-F-F-F-F

0.00 -1010.06 5 5

188

Motif group HL_81312.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F-F

0.00 -1017.81 8 7

189

Motif group HL_55305.1

Basepair signature:
cWW-F-F-F-F-F

0.00 -1041.84 7 6

190

Motif group HL_73183.1

Basepair signature:
cWW-tSH-tHW-F-F-F-F-F-F-F-F-F

0.00 -1056.49 10 9

Pseudoknot geometry with G-bulge

191

Motif group HL_01255.1

Basepair signature:
F-F-F-F-F-F-F-F

0.00 -1071.32 8 7

192

Motif group HL_38649.1

Basepair signature:
cWW-tSH-F-F-F-F-F-F

0.00 -1116.37 6 5

193

Motif group HL_16398.2

Basepair signature:
cWW-F-F-F-F-F-F

0.00 -1138.72 8 7

194

Motif group HL_55436.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F

0.00 -1146.85 6 5

195

Motif group HL_47732.1

Basepair signature:
cWW-F-F-F-F-F-F

0.00 -1187.73 9 7

196

Motif group HL_29958.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F

0.00 -1248.27 9 8

197

Motif group HL_38168.1

Basepair signature:
cWW-F

0.00 -1259.83 5 4

198

Motif group HL_57176.2

Basepair signature:
cWW-F-F-F

0.00 -1275.22 4 3

Pseudoknot geometry with 3' bulge

199

Motif group HL_64292.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F

0.00 -1284.35 10 10

200

Motif group HL_75660.5

Basepair signature:
cWW-F

0.00 -1302.24 4 3

201

Motif group HL_20781.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F

0.00 -1393.53 8 7

202

Motif group HL_97983.1

Basepair signature:
cWW-F-F

0.00 -1540.62 7 5

203

Motif group HL_74292.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F

0.00 -1759.24 6 6

204

Motif group HL_99040.1

Basepair signature:
F-F-F-F-F-F

0.00 -1833.06 6 4

205

Motif group HL_99867.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F

0.00 -1930.20 5 4

206

Motif group HL_89199.2

Basepair signature:
cWW-F-F-F

0.00 -1941.42 5 4

Mini UNCG

207

Motif group HL_77600.2

Basepair signature:
cWW-F-F-F-F-F

0.00 -1966.80 4 4

208

Motif group HL_56334.1

Basepair signature:
cWW-F

0.00 -2170.49 4 3

Mini UNCG

209

Motif group HL_29966.1

Basepair signature:
cWW-F-F-F

0.00 -2180.09 6 5

210

Motif group HL_65313.1

Basepair signature:
cWW-F-F-F

0.00 -2189.34 6 4

211

Motif group HL_86883.1

Basepair signature:
cWW-F-F-F

0.00 -2198.22 5 4

212

Motif group HL_52953.3

Basepair signature:
cWW-F-F-F-F

0.00 -2204.10 4 4

213

Motif group HL_32346.4

Basepair signature:
cWW-F

0.00 -2209.06 4 3

214

Motif group HL_80709.3

Basepair signature:
cWW-F-F-F

0.00 -2209.87 5 3

215

Motif group HL_28791.1

Basepair signature:
cWW-F-F-F-F

0.00 -2212.21 6 4

216

Motif group HL_55195.3

Basepair signature:
cWW-F

0.00 -2215.38 4 4

217

Motif group HL_58539.1

Basepair signature:
cWW-tWS-F-tHW-F-F-F-F-F-F-F-F

0.00 -2710.14 10 9

218

Motif group HL_50779.4

Basepair signature:
cWW-F-F-F-F-F-F-F

0.00 -2868.32 5 5

219

Motif group HL_22135.1

Basepair signature:
cWW-F-F

0.00 -2902.08 6 5

220

Motif group HL_50851.1

Basepair signature:
cWW-cWH-cWH-cWH-cWH-F

0.00 -2959.88 8 7

G-quadruplex fragment

221

Motif group HL_35941.1

Basepair signature:
cWW-F

0.00 -3086.58 6 4

222

Motif group HL_78677.1

Basepair signature:
cWW-F-F

0.00 -3091.40 4 4

223

Motif group HL_60914.1

Basepair signature:
cWW-F

0.00 -3125.63 6 5

224

Motif group HL_26631.1

Basepair signature:
cWW-F-F-F

0.00 -3135.39 6 4

225

Motif group HL_04725.1

Basepair signature:
cWW-cWS-cWW-cWW-cWS

0.00 -3167.22 7 6

226

Motif group HL_31581.6

Basepair signature:
cWW-cHS-F-F-F-cWW-F-F-F

0.00 -3304.43 7 6

227

Motif group HL_07903.1

Basepair signature:
cWW-cWW-F-F-F-F-F-F-F-F-F

0.00 -3311.13 9 8

228

Motif group HL_63355.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F-F-F-F

0.00 -3361.51 8 8

229

Motif group HL_15118.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F-F

0.00 -3532.76 7 6

230

Motif group HL_93383.1

Basepair signature:
cWW-cSH-F-F-F-F-F-F

0.00 -3569.09 6 5

231

Motif group HL_59564.1

Basepair signature:
cWW-F-cSS-F-cSS-F-F-F-F-F-F-F-F-F-F-F-F

0.00 -3738.91 15 14

232

Motif group HL_94980.1

Basepair signature:
cWW-F-F

0.00 -3809.92 6 4

233

Motif group HL_99324.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F

0.00 -3831.45 12 10

234

Motif group HL_24792.1

Basepair signature:
cWW-cWS-F-F-F

0.00 -3841.61 6 6

235

Motif group HL_00317.1

Basepair signature:
cWW-F-cSS-F-F-F-F-F-F-F-F-F-F-F-F-F-F

0.00 -3879.86 15 14

236

Motif group HL_81100.2

Basepair signature:
cWW

0.00 -3903.06 5 4

237

Motif group HL_85461.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F-F-F-F-F-F

0.00 -3924.41 13 13

238

Motif group HL_60293.1

Basepair signature:
cWW-cWH-F-cWH-cHW-cHW-cWH-cHW-cWH-F-cWH-cWH-cWH-F

0.00 -3963.86 16 15

G-quadruplex

239

Motif group HL_21400.1

Basepair signature:
cWW-tWH-tSW-cWW-cWH-cHW-cWH-cWH-cHW-cWH-cHW-cWH-cWH-cWH-cWH-cWH

0.00 -4050.26 18 17

G-quadruplex

240

Motif group HL_35354.1

Basepair signature:
cWW-cWH-cHW-F-cWH-cHW-F-F-tHH-cWH-tWW-cWH-F-tWW-cWH-F-cWH

0.00 -4055.93 18 17

241

Motif group HL_12758.3

Basepair signature:
cWW-tSH-F-cHW-F-F-cWH-cHW-cWH-cHW-cWH-cWH-F-tSH-F-cHW-F-cWH-cWH

0.00 -4081.46 19 18

G-quadruplex

242

Motif group HL_80241.1

Basepair signature:
cWW-F-F-F-F-F-F-F

0.00 -4145.18 5 4

243

Motif group HL_70751.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F-F

0.00 -4147.47 7 6

244

Motif group HL_88364.2

Basepair signature:
cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

0.00 -4192.07 10 9

245

Motif group HL_36684.4

Basepair signature:
cWW-F-F-F-F-F-F-F-F-F

0.00 -4257.08 5 5

246

Motif group HL_78284.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F-F-F

0.00 -4286.59 7 6

247

Motif group HL_50418.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F-F

0.00 -4348.65 6 5

248

Motif group HL_73916.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F

0.00 -4516.08 32 32

249

Motif group HL_68572.1

Basepair signature:
cWW-F-F-F-F-F-F-F

0.00 -4924.32 8 7

250

Motif group HL_12870.1

Basepair signature:
cWW-tHW-F-F-F-F-F-F-F-F-F

0.00 -6682.19 8 8

251

Motif group HL_76094.1

Basepair signature:
cWW-cWS-F-F

0.00 -8848.55 6 5

252

Motif group HL_07951.3

Basepair signature:
cWW-F-F

0.00 -9999.00 6 5

tRNA D-loop

253

Motif group HL_09260.2

Basepair signature:
cWW-F-F-F-F

0.00 -9999.00 7 6

tRNA D-loop

Coloring options: