JAR3D
Query RF00230-CCF-3.98 completed
Run on Motif Atlas Version
using the Rfam secondary structure. Run with the CaCoFold secondary structure.
Loop 15 Hairpin loop
Column numbers: 412-498 - View nucleotides in PDB file(s)
Scored sequences and counts
U-----------------------------------------------------------------------------------UUU 3
U------------------------------------------------------------------------------------UU 3
A-------------------------------------------------------------------------------------U 3
AGGUUUAGUGUAUCUUUA---------------------------------------------------------------UAACUU 2
GAGAUGAAGCAUUUCAAAUUUCACGAUGAUAGUAUUGGUAUGAUUAUUCCAAUUAUGUUAAAAGAGUGAAUUUGAUAUUAAACAUCC 1
GUGUCGCCGUUUAUCGGC---------------------------------------------------------------GCAUGC 1
UAUAGACUCAUU---------------------------------------------------------------------UCUACA 1
CAAAUUCCUG-----------------------------------------------------------------------GAUUUG 1
GUUUGGCAU------------------------------------------------------------------------AAUAAC 1
UGAUUUUU-------------------------------------------------------------------------AAAUUG 1
AUCAAUA--------------------------------------------------------------------------AAUGAU 1
GUGUUG---------------------------------------------------------------------------AAUUGC 1
CAUGA----------------------------------------------------------------------------CAUAUG 1
ACAU-----------------------------------------------------------------------------UUUAGU 1
AUCG-----------------------------------------------------------------------------UGAGAU 1
UCAG-----------------------------------------------------------------------------CGAUGG 1
UUAA-----------------------------------------------------------------------------UUUUAG 1
UUUG-----------------------------------------------------------------------------UGAAAA 1
AGG------------------------------------------------------------------------------UAUUUA 1
AA-------------------------------------------------------------------------------UUACUU 1
AU-------------------------------------------------------------------------------ACUUGU 1
CG-------------------------------------------------------------------------------AAACUG 1
UU-------------------------------------------------------------------------------UCUUAU 1
G--------------------------------------------------------------------------------AAAGAA 1
G--------------------------------------------------------------------------------AUAGUC 1
U--------------------------------------------------------------------------------AUUAAU 1
U---------------------------------------------------------------------------------ACUUA 1
A----------------------------------------------------------------------------------AAUU 1
C----------------------------------------------------------------------------------UUUG 1
G----------------------------------------------------------------------------------UACA 1
U----------------------------------------------------------------------------------UGGU 1
U----------------------------------------------------------------------------------UUAU 1
A-----------------------------------------------------------------------------------UUU 1
G-----------------------------------------------------------------------------------UAU 1
U-----------------------------------------------------------------------------------ACG 1
U-----------------------------------------------------------------------------------AUG 1
U-----------------------------------------------------------------------------------CAU 1
U-----------------------------------------------------------------------------------UAG 1
U------------------------------------------------------------------------------------UA 1
C-------------------------------------------------------------------------------------A 1
U-------------------------------------------------------------------------------------U 1
Click on headings to reorder table
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group HL_56131.2
Basepair signature:
|
31.25 | -1260.30 | 3.5 | 2 |
|
| 2 |
Motif group HL_78677.1
Basepair signature:
|
31.25 | -4769.33 | 4.5 | 3 |
|
| 3 |
Motif group HL_32346.4
Basepair signature:
|
29.17 | -3686.72 | 3 | 2 |
|
| 4 |
Motif group HL_56334.1
Basepair signature:
|
29.17 | -3691.33 | 3 | 3 |
Mini UNCG |
| 5 |
Motif group HL_48778.2
Basepair signature:
|
25.00 | -3472.24 | 3 | 2 |
Mini UNCG |
| 6 |
Motif group HL_70782.2
Basepair signature:
|
22.92 | -3459.90 | 4 | 3 |
|
| 7 |
Motif group HL_13189.1
Basepair signature:
|
20.83 | -1944.97 | 4.5 | 3 |
|
| 8 |
Motif group HL_48417.5
Basepair signature:
|
16.67 | -1065.17 | 4 | 2 |
|
| 9 |
Motif group HL_46501.1
Basepair signature:
|
16.67 | -2168.62 | 4 | 3 |
|
| 10 |
Motif group HL_94980.1
Basepair signature:
|
16.67 | -4772.78 | 4 | 2.5 |
|
| 11 |
Motif group HL_27483.1
Basepair signature:
|
12.50 | -1733.38 | 4 | 3 |
|
| 12 |
Motif group HL_75660.5
Basepair signature:
|
12.50 | -4359.96 | 3 | 2.5 |
|
| 13 |
Motif group HL_69752.2
Basepair signature:
|
12.50 | -4371.50 | 4 | 3 |
|
| 14 |
Motif group HL_32392.1
Basepair signature:
|
8.33 | -2198.35 | 4 | 3 |
|
| 15 |
Motif group HL_53890.2
Basepair signature:
|
8.33 | -2421.74 | 4 | 3 |
|
| 16 |
Motif group HL_57875.1
Basepair signature:
|
8.33 | -3040.96 | 4 | 3 |
|
| 17 |
Motif group HL_38901.2
Basepair signature:
|
8.33 | -3270.18 | 4 | 3 |
tRNA D-loop |
| 18 |
Motif group HL_50318.1
Basepair signature:
|
6.25 | -2000.51 | 5 | 5 |
|
| 19 |
Motif group HL_04783.2
Basepair signature:
|
6.25 | -2210.72 | 4 | 3 |
|
| 20 |
Motif group HL_86870.2
Basepair signature:
|
6.25 | -2418.71 | 4 | 3 |
|
| 21 |
Motif group HL_20535.2
Basepair signature:
|
6.25 | -3041.46 | 5 | 4 |
|
| 22 |
Motif group HL_43517.1
Basepair signature:
|
6.25 | -3053.92 | 4 | 3 |
|
| 23 |
Motif group HL_35941.1
Basepair signature:
|
6.25 | -4797.89 | 5 | 3 |
|
| 24 |
Motif group HL_57176.2
Basepair signature:
|
6.25 | -5452.11 | 4 | 3 |
Pseudoknot geometry with 3' bulge |
| 25 |
Motif group HL_50860.2
Basepair signature:
|
4.17 | -716.81 | 6 | 5 |
|
| 26 |
Motif group HL_77436.5
Basepair signature:
|
4.17 | -1580.91 | 4 | 3.5 |
T-loop related |
| 27 |
Motif group HL_28075.1
Basepair signature:
|
4.17 | -2130.71 | 5 | 4 |
|
| 28 |
Motif group HL_80922.2
Basepair signature:
|
4.17 | -2445.81 | 5 | 4 |
|
| 29 |
Motif group HL_50006.2
Basepair signature:
|
4.17 | -2603.34 | 5 | 3 |
|
| 30 |
Motif group HL_53454.2
Basepair signature:
|
4.17 | -2896.00 | 7 | 6 |
|
| 31 |
Motif group HL_89893.1
Basepair signature:
|
4.17 | -3052.63 | 6 | 5 |
|
| 32 |
Motif group HL_91503.7
Basepair signature:
|
4.17 | -3382.47 | 7 | 7 |
|
| 33 |
Motif group HL_29762.1
Basepair signature:
|
4.17 | -3545.55 | 7 | 7 |
|
| 34 |
Motif group HL_55436.1
Basepair signature:
|
4.17 | -4045.19 | 7 | 7 |
|
| 35 |
Motif group HL_38168.1
Basepair signature:
|
4.17 | -4368.55 | 4 | 3 |
|
| 36 |
Motif group HL_55195.3
Basepair signature:
|
4.17 | -4629.28 | 4 | 3 |
|
| 37 |
Motif group HL_76094.1
Basepair signature:
|
4.17 | -4858.33 | 4 | 3 |
|
| 38 |
Motif group HL_99867.1
Basepair signature:
|
4.17 | -5011.41 | 6 | 6 |
|
| 39 |
Motif group HL_39243.1
Basepair signature:
|
4.17 | -5026.18 | 6 | 4 |
|
| 40 |
Motif group HL_29966.1
Basepair signature:
|
4.17 | -5670.45 | 4 | 3.5 |
|
| 41 |
Motif group HL_65313.1
Basepair signature:
|
4.17 | -5675.37 | 5 | 4 |
|
| 42 |
Motif group HL_60914.1
Basepair signature:
|
4.17 | -5698.90 | 5 | 3.5 |
|
| 43 |
Motif group HL_26631.1
Basepair signature:
|
4.17 | -6758.83 | 4.5 | 3 |
|
| 44 |
Motif group HL_81100.2
Basepair signature:
|
4.17 | -7771.54 | 5 | 4 |
|
| 45 |
Motif group HL_67079.1
Basepair signature:
|
2.08 | -362.57 | 7 | 7 |
|
| 46 |
Motif group HL_41464.2
Basepair signature:
|
2.08 | -504.50 | 7 | 5 |
|
| 47 |
Motif group HL_13529.1
Basepair signature:
|
2.08 | -964.99 | 4.5 | 4 |
|
| 48 |
Motif group HL_78347.4
Basepair signature:
|
2.08 | -1114.06 | 4 | 3 |
|
| 49 |
Motif group HL_04259.3
Basepair signature:
|
2.08 | -1221.54 | 6 | 5 |
GNRA with extra cWW |
| 50 |
Motif group HL_25847.2
Basepair signature:
|
2.08 | -1460.15 | 7 | 7 |
|
| 51 |
Motif group HL_98864.1
Basepair signature:
|
2.08 | -1521.42 | 7 | 6 |
T-loop with unstacked turn |
| 52 |
Motif group HL_89567.2
Basepair signature:
|
2.08 | -1944.21 | 6 | 5 |
|
| 53 |
Motif group HL_22584.6
Basepair signature:
|
2.08 | -2273.53 | 5 | 3 |
Fab BL3-6 binding hairpin with tSW |
| 54 |
Motif group HL_29129.3
Basepair signature:
|
2.08 | -2388.88 | 7 | 6 |
|
| 55 |
Motif group HL_07886.3
Basepair signature:
|
2.08 | -2417.56 | 3 | 3 |
|
| 56 |
Motif group HL_08100.1
Basepair signature:
|
2.08 | -2608.25 | 5 | 4 |
|
| 57 |
Motif group HL_87463.1
Basepair signature:
|
2.08 | -2661.27 | 7 | 6 |
|
| 58 |
Motif group HL_34964.1
Basepair signature:
|
2.08 | -2717.98 | 7 | 7 |
|
| 59 |
Motif group HL_99748.1
Basepair signature:
|
2.08 | -2772.38 | 6 | 5 |
Other HL |
| 60 |
Motif group HL_21372.1
Basepair signature:
|
2.08 | -2851.91 | 6 | 5 |
|
| 61 |
Motif group HL_47854.1
Basepair signature:
|
2.08 | -2958.55 | 7 | 6 |
|
| 62 |
Motif group HL_66103.1
Basepair signature:
|
2.08 | -3066.04 | 5 | 4 |
|
| 63 |
Motif group HL_80008.1
Basepair signature:
|
2.08 | -3067.73 | 7 | 6 |
|
| 64 |
Motif group HL_82710.2
Basepair signature:
|
2.08 | -3081.20 | 5 | 3 |
|
| 65 |
Motif group HL_25967.2
Basepair signature:
|
2.08 | -3390.04 | 5 | 4 |
|
| 66 |
Motif group HL_97733.1
Basepair signature:
|
2.08 | -3658.17 | 8 | 7 |
|
| 67 |
Motif group HL_93135.1
Basepair signature:
|
2.08 | -3721.32 | 7 | 7 |
Pseudoknot |
| 68 |
Motif group HL_69139.1
Basepair signature:
|
2.08 | -3917.54 | 7 | 6 |
|
| 69 |
Motif group HL_85367.2
Basepair signature:
|
2.08 | -4135.38 | 5 | 4.5 |
|
| 70 |
Motif group HL_27670.2
Basepair signature:
|
2.08 | -4137.87 | 5 | 4 |
T-loop with unstacked turn |
| 71 |
Motif group HL_78284.1
Basepair signature:
|
2.08 | -4378.21 | 9 | 8 |
|
| 72 |
Motif group HL_22135.1
Basepair signature:
|
2.08 | -4593.11 | 5 | 3.5 |
|
| 73 |
Motif group HL_50418.1
Basepair signature:
|
2.08 | -5165.07 | 8 | 7 |
|
| 74 |
Motif group HL_09452.1
Basepair signature:
|
2.08 | -5169.91 | 6 | 5 |
|
| 75 |
Motif group HL_65794.5
Basepair signature:
|
2.08 | -5236.52 | 4 | 3 |
Pseudoknot geometry |
| 76 |
Motif group HL_97983.1
Basepair signature:
|
2.08 | -5509.62 | 6 | 6 |
|
| 77 |
Motif group HL_80709.3
Basepair signature:
|
2.08 | -5675.75 | 4 | 3 |
|
| 78 |
Motif group HL_15574.1
Basepair signature:
|
2.08 | -5684.93 | 6 | 5 |
|
| 79 |
Motif group HL_93324.4
Basepair signature:
|
2.08 | -6296.00 | 4.5 | 4 |
Pseudoknot geometry |
| 80 |
Motif group HL_41902.1
Basepair signature:
|
0.00 | -342.47 | 10 | 9 |
|
| 81 |
Motif group HL_41543.1
Basepair signature:
|
0.00 | -345.16 | 8 | 7 |
|
| 82 |
Motif group HL_81545.2
Basepair signature:
|
0.00 | -349.62 | 6 | 6 |
|
| 83 |
Motif group HL_74055.2
Basepair signature:
|
0.00 | -358.40 | 11 | 10 |
|
| 84 |
Motif group HL_08602.1
Basepair signature:
|
0.00 | -358.54 | 10 | 9 |
|
| 85 |
Motif group HL_93438.2
Basepair signature:
|
0.00 | -359.96 | 6 | 6 |
|
| 86 |
Motif group HL_07583.1
Basepair signature:
|
0.00 | -383.42 | 9 | 8.5 |
|
| 87 |
Motif group HL_14757.1
Basepair signature:
|
0.00 | -398.58 | 13.5 | 13 |
|
| 88 |
Motif group HL_68767.1
Basepair signature:
|
0.00 | -400.80 | 9.5 | 9 |
tRNA D-loop |
| 89 |
Motif group HL_20167.2
Basepair signature:
|
0.00 | -407.06 | 5 | 5 |
|
| 90 |
Motif group HL_36335.1
Basepair signature:
|
0.00 | -426.59 | 8.5 | 7 |
|
| 91 |
Motif group HL_53504.3
Basepair signature:
|
0.00 | -454.92 | 8 | 7 |
|
| 92 |
Motif group HL_86769.4
Basepair signature:
|
0.00 | -483.57 | 5.5 | 5 |
|
| 93 |
Motif group HL_04171.7
Basepair signature:
|
0.00 | -488.09 | 7 | 7 |
|
| 94 |
Motif group HL_13971.1
Basepair signature:
|
0.00 | -586.14 | 10 | 10 |
|
| 95 |
Motif group HL_86012.1
Basepair signature:
|
0.00 | -615.67 | 6 | 5 |
T-loop with unstacked turn |
| 96 |
Motif group HL_92488.1
Basepair signature:
|
0.00 | -681.30 | 12 | 12 |
|
| 97 |
Motif group HL_26934.1
Basepair signature:
|
0.00 | -704.02 | 6 | 5 |
|
| 98 |
Motif group HL_68257.1
Basepair signature:
|
0.00 | -738.18 | 7 | 7 |
|
| 99 |
Motif group HL_61996.2
Basepair signature:
|
0.00 | -747.27 | 6 | 5 |
|
| 100 |
Motif group HL_20743.5
Basepair signature:
|
0.00 | -749.42 | 6 | 5 |
|
| 101 |
Motif group HL_81205.3
Basepair signature:
|
0.00 | -845.70 | 11 | 10 |
|
| 102 |
Motif group HL_02887.3
Basepair signature:
|
0.00 | -849.21 | 8 | 6 |
T-loop with 3 stacked bulged bases |
| 103 |
Motif group HL_86109.1
Basepair signature:
|
0.00 | -856.97 | 10 | 9 |
|
| 104 |
Motif group HL_73247.1
Basepair signature:
|
0.00 | -871.61 | 11 | 10 |
Pseudoknot geometry |
| 105 |
Motif group HL_74379.3
Basepair signature:
|
0.00 | -873.98 | 9 | 8 |
|
| 106 |
Motif group HL_84847.1
Basepair signature:
|
0.00 | -879.64 | 11 | 10 |
|
| 107 |
Motif group HL_70658.1
Basepair signature:
|
0.00 | -888.18 | 9 | 8 |
|
| 108 |
Motif group HL_91641.1
Basepair signature:
|
0.00 | -902.58 | 12 | 12 |
|
| 109 |
Motif group HL_98870.1
Basepair signature:
|
0.00 | -905.04 | 11 | 11 |
|
| 110 |
Motif group HL_97756.2
Basepair signature:
|
0.00 | -922.62 | 11 | 10 |
|
| 111 |
Motif group HL_90620.1
Basepair signature:
|
0.00 | -966.74 | 9 | 7 |
|
| 112 |
Motif group HL_88205.2
Basepair signature:
|
0.00 | -976.16 | 7 | 6 |
|
| 113 |
Motif group HL_40252.4
Basepair signature:
|
0.00 | -1039.96 | 8 | 7 |
|
| 114 |
Motif group HL_60266.1
Basepair signature:
|
0.00 | -1042.79 | 8 | 7 |
|
| 115 |
Motif group HL_51921.1
Basepair signature:
|
0.00 | -1183.45 | 15.5 | 15.5 |
|
| 116 |
Motif group HL_37824.7
Basepair signature:
|
0.00 | -1206.80 | 4 | 3 |
GNRA |
| 117 |
Motif group HL_83808.4
Basepair signature:
|
0.00 | -1211.94 | 7 | 6 |
Pseudoknot |
| 118 |
Motif group HL_23509.1
Basepair signature:
|
0.00 | -1239.42 | 8 | 8 |
|
| 119 |
Motif group HL_49941.1
Basepair signature:
|
0.00 | -1261.60 | 8 | 7 |
tRNA D-loop |
| 120 |
Motif group HL_45175.1
Basepair signature:
|
0.00 | -1294.81 | 6 | 5 |
tRNA D-loop |
| 121 |
Motif group HL_01962.2
Basepair signature:
|
0.00 | -1351.60 | 7 | 7 |
|
| 122 |
Motif group HL_18423.1
Basepair signature:
|
0.00 | -1356.25 | 7 | 7 |
|
| 123 |
Motif group HL_18565.1
Basepair signature:
|
0.00 | -1436.81 | 6 | 6 |
|
| 124 |
Motif group HL_28252.8
Basepair signature:
|
0.00 | -1471.11 | 5.5 | 5 |
T-loop with 2 stacked bulged bases |
| 125 |
Motif group HL_73266.9
Basepair signature:
|
0.00 | -1491.64 | 6 | 5 |
|
| 126 |
Motif group HL_16991.1
Basepair signature:
|
0.00 | -1534.05 | 9 | 8 |
G-quadruplex fragment |
| 127 |
Motif group HL_57863.1
Basepair signature:
|
0.00 | -1667.04 | 7 | 6 |
G-quadruplex fragment |
| 128 |
Motif group HL_04642.1
Basepair signature:
|
0.00 | -1677.46 | 7 | 6 |
tRNA D-loop |
| 129 |
Motif group HL_01609.3
Basepair signature:
|
0.00 | -1760.46 | 5 | 4 |
T-loop with 2 bulged bases not stacked |
| 130 |
Motif group HL_98252.1
Basepair signature:
|
0.00 | -1761.69 | 8 | 7 |
|
| 131 |
Motif group HL_02581.1
Basepair signature:
|
0.00 | -1771.78 | 11 | 10.5 |
tRNA D-loop |
| 132 |
Motif group HL_66853.7
Basepair signature:
|
0.00 | -1830.35 | 6 | 5 |
|
| 133 |
Motif group HL_91939.2
Basepair signature:
|
0.00 | -1852.70 | 8 | 7 |
|
| 134 |
Motif group HL_42046.2
Basepair signature:
|
0.00 | -1856.82 | 5 | 4 |
|
| 135 |
Motif group HL_06226.4
Basepair signature:
|
0.00 | -1871.01 | 8 | 7 |
|
| 136 |
Motif group HL_37344.1
Basepair signature:
|
0.00 | -1995.59 | 5 | 4 |
|
| 137 |
Motif group HL_75293.5
Basepair signature:
|
0.00 | -2031.73 | 7 | 6 |
|
| 138 |
Motif group HL_93616.2
Basepair signature:
|
0.00 | -2054.21 | 8 | 7 |
tRNA D-loop |
| 139 |
Motif group HL_10540.1
Basepair signature:
|
0.00 | -2070.04 | 6 | 5 |
|
| 140 |
Motif group HL_73255.1
Basepair signature:
|
0.00 | -2106.93 | 7 | 6 |
|
| 141 |
Motif group HL_20811.4
Basepair signature:
|
0.00 | -2121.39 | 5 | 4 |
tRNA D-loop |
| 142 |
Motif group HL_85434.1
Basepair signature:
|
0.00 | -2126.53 | 8 | 6 |
|
| 143 |
Motif group HL_84299.4
Basepair signature:
|
0.00 | -2146.46 | 6 | 5 |
|
| 144 |
Motif group HL_02483.1
Basepair signature:
|
0.00 | -2168.37 | 9 | 8 |
|
| 145 |
Motif group HL_18978.1
Basepair signature:
|
0.00 | -2173.25 | 7 | 6 |
|
| 146 |
Motif group HL_07480.2
Basepair signature:
|
0.00 | -2224.79 | 8 | 7 |
|
| 147 |
Motif group HL_05304.3
Basepair signature:
|
0.00 | -2234.89 | 9 | 8 |
|
| 148 |
Motif group HL_87553.1
Basepair signature:
|
0.00 | -2236.06 | 5 | 4 |
|
| 149 |
Motif group HL_30068.2
Basepair signature:
|
0.00 | -2271.49 | 4 | 4 |
|
| 150 |
Motif group HL_64690.6
Basepair signature:
|
0.00 | -2300.67 | 6 | 5 |
|
| 151 |
Motif group HL_10456.1
Basepair signature:
|
0.00 | -2332.45 | 14 | 13.5 |
|
| 152 |
Motif group HL_66482.1
Basepair signature:
|
0.00 | -2346.83 | 14 | 13 |
|
| 153 |
Motif group HL_13963.3
Basepair signature:
|
0.00 | -2416.78 | 5 | 4 |
|
| 154 |
Motif group HL_89881.5
Basepair signature:
|
0.00 | -2428.57 | 7 | 7 |
|
| 155 |
Motif group HL_59843.1
Basepair signature:
|
0.00 | -2468.41 | 5 | 4 |
|
| 156 |
Motif group HL_49922.4
Basepair signature:
|
0.00 | -2487.22 | 4 | 3 |
|
| 157 |
Motif group HL_89346.1
Basepair signature:
|
0.00 | -2499.72 | 14 | 14 |
|
| 158 |
Motif group HL_45785.1
Basepair signature:
|
0.00 | -2502.65 | 8 | 8 |
|
| 159 |
Motif group HL_50537.6
Basepair signature:
|
0.00 | -2575.53 | 5 | 4.5 |
tRNA anticodon loop with synthetase |
| 160 |
Motif group HL_24792.1
Basepair signature:
|
0.00 | -2595.17 | 7 | 6 |
|
| 161 |
Motif group HL_34617.5
Basepair signature:
|
0.00 | -2600.72 | 4 | 3 |
UNCG |
| 162 |
Motif group HL_15802.1
Basepair signature:
|
0.00 | -2651.47 | 6 | 6 |
|
| 163 |
Motif group HL_56676.1
Basepair signature:
|
0.00 | -2679.38 | 5 | 3 |
|
| 164 |
Motif group HL_33074.4
Basepair signature:
|
0.00 | -2680.64 | 9 | 8 |
U1 small nuclear ribonucleoprotein A binding hairpin |
| 165 |
Motif group HL_62934.1
Basepair signature:
|
0.00 | -2687.67 | 5.5 | 4 |
|
| 166 |
Motif group HL_87954.2
Basepair signature:
|
0.00 | -2703.97 | 5 | 4 |
|
| 167 |
Motif group HL_77082.1
Basepair signature:
|
0.00 | -2727.74 | 5 | 4 |
Pseudoknot geometry |
| 168 |
Motif group HL_20751.2
Basepair signature:
|
0.00 | -2778.63 | 10 | 9 |
|
| 169 |
Motif group HL_58224.1
Basepair signature:
|
0.00 | -2820.36 | 7 | 6 |
|
| 170 |
Motif group HL_99769.3
Basepair signature:
|
0.00 | -2822.46 | 7 | 7 |
|
| 171 |
Motif group HL_81538.2
Basepair signature:
|
0.00 | -2828.69 | 4 | 4 |
GNRA with tandem sheared |
| 172 |
Motif group HL_23010.1
Basepair signature:
|
0.00 | -2868.31 | 8 | 7 |
|
| 173 |
Motif group HL_71391.1
Basepair signature:
|
0.00 | -2913.69 | 5 | 4 |
|
| 174 |
Motif group HL_04641.1
Basepair signature:
|
0.00 | -2954.22 | 8 | 7 |
|
| 175 |
Motif group HL_80599.2
Basepair signature:
|
0.00 | -2960.84 | 6 | 5 |
|
| 176 |
Motif group HL_11542.1
Basepair signature:
|
0.00 | -2964.09 | 11 | 9.5 |
|
| 177 |
Motif group HL_72628.1
Basepair signature:
|
0.00 | -3089.04 | 7 | 6 |
|
| 178 |
Motif group HL_73183.1
Basepair signature:
|
0.00 | -3110.71 | 11 | 11 |
Pseudoknot geometry with G-bulge |
| 179 |
Motif group HL_32735.2
Basepair signature:
|
0.00 | -3166.06 | 5.5 | 5 |
|
| 180 |
Motif group HL_97917.2
Basepair signature:
|
0.00 | -3257.06 | 6 | 4 |
|
| 181 |
Motif group HL_50851.1
Basepair signature:
|
0.00 | -3301.43 | 9 | 8 |
G-quadruplex fragment |
| 182 |
Motif group HL_93535.1
Basepair signature:
|
0.00 | -3303.11 | 5 | 4 |
|
| 183 |
Motif group HL_23115.1
Basepair signature:
|
0.00 | -3348.00 | 8 | 7 |
tRNA D-loop |
| 184 |
Motif group HL_37369.2
Basepair signature:
|
0.00 | -3369.88 | 5 | 4 |
|
| 185 |
Motif group HL_59564.1
Basepair signature:
|
0.00 | -3394.66 | 16 | 15 |
|
| 186 |
Motif group HL_88558.1
Basepair signature:
|
0.00 | -3403.66 | 8 | 8 |
|
| 187 |
Motif group HL_07903.1
Basepair signature:
|
0.00 | -3418.73 | 10.5 | 10 |
|
| 188 |
Motif group HL_00317.1
Basepair signature:
|
0.00 | -3447.31 | 16 | 15 |
|
| 189 |
Motif group HL_47787.2
Basepair signature:
|
0.00 | -3471.29 | 4 | 3 |
|
| 190 |
Motif group HL_63355.1
Basepair signature:
|
0.00 | -3475.94 | 11 | 10 |
|
| 191 |
Motif group HL_99324.1
Basepair signature:
|
0.00 | -3481.25 | 12 | 12 |
|
| 192 |
Motif group HL_25061.1
Basepair signature:
|
0.00 | -3482.07 | 7 | 6 |
|
| 193 |
Motif group HL_67407.5
Basepair signature:
|
0.00 | -3521.98 | 8 | 7 |
|
| 194 |
Motif group HL_80411.1
Basepair signature:
|
0.00 | -3522.88 | 9 | 8 |
tRNA D-loop |
| 195 |
Motif group HL_04725.1
Basepair signature:
|
0.00 | -3537.66 | 8 | 7.5 |
|
| 196 |
Motif group HL_81312.1
Basepair signature:
|
0.00 | -3563.14 | 8 | 8 |
|
| 197 |
Motif group HL_85461.1
Basepair signature:
|
0.00 | -3567.68 | 15 | 14.5 |
|
| 198 |
Motif group HL_33983.1
Basepair signature:
|
0.00 | -3569.45 | 7 | 5 |
|
| 199 |
Motif group HL_16398.2
Basepair signature:
|
0.00 | -3602.68 | 10 | 9 |
|
| 200 |
Motif group HL_60293.1
Basepair signature:
|
0.00 | -3607.92 | 17 | 17 |
G-quadruplex |
| 201 |
Motif group HL_55305.1
Basepair signature:
|
0.00 | -3683.78 | 8 | 8 |
|
| 202 |
Motif group HL_21400.1
Basepair signature:
|
0.00 | -3688.81 | 18 | 18 |
G-quadruplex |
| 203 |
Motif group HL_06059.6
Basepair signature:
|
0.00 | -3692.55 | 5 | 5 |
tRNA anticodon loop |
| 204 |
Motif group HL_19210.3
Basepair signature:
|
0.00 | -3699.00 | 7 | 6 |
|
| 205 |
Motif group HL_31581.6
Basepair signature:
|
0.00 | -3706.37 | 8 | 8 |
|
| 206 |
Motif group HL_12758.3
Basepair signature:
|
0.00 | -3738.54 | 21 | 20 |
G-quadruplex |
| 207 |
Motif group HL_01255.1
Basepair signature:
|
0.00 | -3777.62 | 9 | 8 |
|
| 208 |
Motif group HL_59330.1
Basepair signature:
|
0.00 | -3787.88 | 6 | 5 |
|
| 209 |
Motif group HL_64292.1
Basepair signature:
|
0.00 | -3803.18 | 12 | 11.5 |
|
| 210 |
Motif group HL_35354.1
Basepair signature:
|
0.00 | -3844.71 | 19 | 19 |
|
| 211 |
Motif group HL_38649.1
Basepair signature:
|
0.00 | -3880.30 | 8 | 7 |
|
| 212 |
Motif group HL_50779.4
Basepair signature:
|
0.00 | -3958.22 | 8 | 6 |
|
| 213 |
Motif group HL_15118.1
Basepair signature:
|
0.00 | -3964.65 | 9 | 8 |
|
| 214 |
Motif group HL_94376.1
Basepair signature:
|
0.00 | -4020.59 | 8 | 7 |
Pseudoknot geometry |
| 215 |
Motif group HL_93383.1
Basepair signature:
|
0.00 | -4033.72 | 7 | 6 |
|
| 216 |
Motif group HL_35677.3
Basepair signature:
|
0.00 | -4046.91 | 6 | 6 |
|
| 217 |
Motif group HL_88364.2
Basepair signature:
|
0.00 | -4070.65 | 11 | 11 |
|
| 218 |
Motif group HL_47732.1
Basepair signature:
|
0.00 | -4074.33 | 9 | 8 |
|
| 219 |
Motif group HL_73916.1
Basepair signature:
|
0.00 | -4084.10 | 34.5 | 34.5 |
|
| 220 |
Motif group HL_38046.1
Basepair signature:
|
0.00 | -4212.03 | 7 | 6 |
|
| 221 |
Motif group HL_08510.1
Basepair signature:
|
0.00 | -4234.28 | 6 | 6 |
|
| 222 |
Motif group HL_29958.1
Basepair signature:
|
0.00 | -4238.28 | 10 | 9 |
|
| 223 |
Motif group HL_22622.1
Basepair signature:
|
0.00 | -4270.41 | 6 | 5 |
|
| 224 |
Motif group HL_80362.1
Basepair signature:
|
0.00 | -4319.63 | 8 | 6 |
|
| 225 |
Motif group HL_83632.1
Basepair signature:
|
0.00 | -4421.96 | 6 | 5 |
tRNA anticodon loop |
| 226 |
Motif group HL_10453.3
Basepair signature:
|
0.00 | -4485.16 | 5 | 4 |
tRNA anticodon loop |
| 227 |
Motif group HL_74292.1
Basepair signature:
|
0.00 | -4522.74 | 8 | 7 |
|
| 228 |
Motif group HL_02817.2
Basepair signature:
|
0.00 | -4576.51 | 6 | 5 |
|
| 229 |
Motif group HL_38808.1
Basepair signature:
|
0.00 | -4633.11 | 6 | 5 |
|
| 230 |
Motif group HL_99040.1
Basepair signature:
|
0.00 | -4757.43 | 5 | 4 |
|
| 231 |
Motif group HL_00914.1
Basepair signature:
|
0.00 | -4815.56 | 7 | 5 |
|
| 232 |
Motif group HL_85993.1
Basepair signature:
|
0.00 | -4848.35 | 6 | 5 |
|
| 233 |
Motif group HL_70751.1
Basepair signature:
|
0.00 | -4917.06 | 8 | 7 |
|
| 234 |
Motif group HL_89199.2
Basepair signature:
|
0.00 | -5016.16 | 4.5 | 4 |
Mini UNCG |
| 235 |
Motif group HL_20781.1
Basepair signature:
|
0.00 | -5033.80 | 9 | 8 |
|
| 236 |
Motif group HL_51447.1
Basepair signature:
|
0.00 | -5037.71 | 6 | 4 |
|
| 237 |
Motif group HL_36684.4
Basepair signature:
|
0.00 | -5055.02 | 7 | 6 |
|
| 238 |
Motif group HL_68572.1
Basepair signature:
|
0.00 | -5135.04 | 10 | 9.5 |
|
| 239 |
Motif group HL_31585.4
Basepair signature:
|
0.00 | -5231.18 | 4 | 4 |
Purine riboswitch |
| 240 |
Motif group HL_52953.3
Basepair signature:
|
0.00 | -5675.14 | 4.5 | 3 |
|
| 241 |
Motif group HL_86883.1
Basepair signature:
|
0.00 | -5695.37 | 4 | 3 |
|
| 242 |
Motif group HL_28791.1
Basepair signature:
|
0.00 | -5699.84 | 5 | 4 |
|
| 243 |
Motif group HL_67667.2
Basepair signature:
|
0.00 | -5701.90 | 5 | 4.5 |
|
| 244 |
Motif group HL_30680.3
Basepair signature:
|
0.00 | -5869.07 | 5 | 4 |
Pseudoknot geometry |
| 245 |
Motif group HL_80241.1
Basepair signature:
|
0.00 | -5875.87 | 6 | 5 |
|
| 246 |
Motif group HL_42998.2
Basepair signature:
|
0.00 | -5926.43 | 6 | 5 |
|
| 247 |
Motif group HL_78197.1
Basepair signature:
|
0.00 | -5986.01 | 5 | 4 |
|
| 248 |
Motif group HL_58539.1
Basepair signature:
|
0.00 | -6010.39 | 12 | 11 |
|
| 249 |
Motif group HL_77600.2
Basepair signature:
|
0.00 | -6159.06 | 5 | 5 |
|
| 250 |
Motif group HL_12870.1
Basepair signature:
|
0.00 | -6509.59 | 10 | 9 |
|
| 251 |
Motif group HL_59735.5
Basepair signature:
|
0.00 | -6526.14 | 5 | 4 |
|
| 252 |
Motif group HL_07951.3
Basepair signature:
|
0.00 | -9999.00 | 7 | 6 |
tRNA D-loop |
| 253 |
Motif group HL_09260.2
Basepair signature:
|
0.00 | -9999.00 | 8 | 7 |
tRNA D-loop |