JAR3D
Query RF02032-3.98 completed
Run on Motif Atlas Version
using the Rfam secondary structure. Run with the CaCoFold secondary structure.
Rfam family RF02032 maps to these 73 chains: 9L0R|1|A, 9L0R|1|B, 9L0R|1|C, 9L0R|1|D, 9L0R|1|E, 9L0R|1|F, 9L0R|1|G, 9L0R|1|H, 9L0R|1|I, 9L0R|1|J, 9L0R|1|K, 9L0R|1|L, 9LEC|1|J, 9LEE|1|A, 9LEE|1|B, 9LEE|1|C, 9LEE|1|D, 9LEE|1|E, 9LEE|1|F, 9LEE|1|G, 9LEE|1|H, 9LEE|1|I, 9LEE|1|J, 9LEL|1|J, 9LEM|1|A, 9LEM|1|B, 9LEM|1|C, 9LEM|1|D, 9LEM|1|E, 9LEM|1|F, 9LEM|1|G, 9LEM|1|H, 9LEM|1|I, 9LEM|1|J, 9LHK|1|G, 9LHL|1|A, 9LHL|1|B, 9LHL|1|C, 9LHL|1|D, 9LHL|1|E, 9LHL|1|F, 9LHL|1|G, 9LHL|1|H, 9LHL|1|I, 9LHL|1|J, 9LHL|1|K, 9LHL|1|L, 9LHL|1|M, 9LHL|1|N, 9LMF|1|A, 9LMF|1|B, 9LMF|1|C, 9LMF|1|D, 9LMF|1|E, 9LMF|1|F, 9LMF|1|G, 9LMF|1|H, 9LMF|1|I, 9LMF|1|J, 9MEE|1|A, 9MEE|1|B, 9MEE|1|C, 9MEE|1|D, 9MEE|1|E, 9MEE|1|F, 9MEE|1|G, 9MEE|1|H, 9MEE|1|I, 9MEE|1|J, 9MEE|1|K, 9MEE|1|L, 9MEE|1|M, 9MEE|1|N See more about them at RNA 3D Hub by filtering on the chain or the Rfam family.
Loop 18 Hairpin loop
Column numbers: 495-519 - View nucleotides in PDB file(s)
Scored sequences and counts
------------CAAA-------A- 13
G-----------GCAA--------C 4
A-----------GGAA--------U 3
G-----------GCAA--------U 2
GAGCAUCCUUGA----UGG-AUGGC 1
UUCUCU-AAGCG---AUG---AGAA 1
UUGU----GGCU----UCGGCCUGG 1
GA---------AGUGAUGA-GCUAC 1
GCA-------GUGAGAGC----CGC 1
AUA-------CCGAAAG-----GGU 1
AUA-------CCGCAAG-----GGU 1
G----------AGUAA-------UC 1
A-----------GGGA--------U 1
C-----------GCAA--------G 1
------------GUCA-------A- 1
------------AUGA--------- 1
------------GGGA--------- 1
Click on headings to reorder table
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group HL_04783.2
Basepair signature:
|
71.43 | -397.95 | 2 | 2 |
|
| 2 |
Motif group HL_53890.2
Basepair signature:
|
68.57 | -962.32 | 2 | 1 |
|
| 3 |
Motif group HL_75660.5
Basepair signature:
|
68.57 | -2143.13 | 1 | 2 |
|
| 4 |
Motif group HL_38168.1
Basepair signature:
|
37.14 | -2164.06 | 4 | 2 |
|
| 5 |
Motif group HL_37824.7
Basepair signature:
|
34.29 | -487.98 | 2 | 1 |
GNRA |
| 6 |
Motif group HL_56334.1
Basepair signature:
|
34.29 | -2162.81 | 3 | 3 |
Mini UNCG |
| 7 |
Motif group HL_50006.2
Basepair signature:
|
31.43 | -983.04 | 3 | 2 |
|
| 8 |
Motif group HL_13963.3
Basepair signature:
|
31.43 | -998.42 | 5 | 4 |
|
| 9 |
Motif group HL_93535.1
Basepair signature:
|
31.43 | -1019.36 | 3 | 2 |
|
| 10 |
Motif group HL_82710.2
Basepair signature:
|
31.43 | -1562.66 | 3 | 2 |
|
| 11 |
Motif group HL_38901.2
Basepair signature:
|
31.43 | -2145.81 | 3 | 2 |
tRNA D-loop |
| 12 |
Motif group HL_65794.5
Basepair signature:
|
31.43 | -6316.61 | 3 | 1 |
Pseudoknot geometry |
| 13 |
Motif group HL_52953.3
Basepair signature:
|
31.43 | -6332.41 | 3 | 2 |
|
| 14 |
Motif group HL_62934.1
Basepair signature:
|
28.57 | -1028.98 | 3 | 3 |
|
| 15 |
Motif group HL_56676.1
Basepair signature:
|
28.57 | -1362.40 | 4 | 3 |
|
| 16 |
Motif group HL_80709.3
Basepair signature:
|
28.57 | -2761.34 | 2 | 2 |
|
| 17 |
Motif group HL_59843.1
Basepair signature:
|
25.71 | -1034.01 | 4 | 2 |
|
| 18 |
Motif group HL_71391.1
Basepair signature:
|
22.86 | -1346.24 | 4 | 3 |
|
| 19 |
Motif group HL_66103.1
Basepair signature:
|
20.00 | -1613.02 | 4 | 3 |
|
| 20 |
Motif group HL_28791.1
Basepair signature:
|
17.14 | -6393.35 | 5 | 5 |
|
| 21 |
Motif group HL_48417.5
Basepair signature:
|
14.29 | -401.54 | 3 | 2 |
|
| 22 |
Motif group HL_56131.2
Basepair signature:
|
14.29 | -996.60 | 4 | 4 |
|
| 23 |
Motif group HL_20811.4
Basepair signature:
|
11.43 | -411.37 | 3 | 3 |
tRNA D-loop |
| 24 |
Motif group HL_80922.2
Basepair signature:
|
11.43 | -725.24 | 3 | 2 |
|
| 25 |
Motif group HL_97917.2
Basepair signature:
|
11.43 | -1021.94 | 5 | 3 |
|
| 26 |
Motif group HL_49922.4
Basepair signature:
|
11.43 | -1042.43 | 3 | 2 |
|
| 27 |
Motif group HL_50318.1
Basepair signature:
|
11.43 | -1669.03 | 5 | 4 |
|
| 28 |
Motif group HL_57176.2
Basepair signature:
|
11.43 | -2756.66 | 2 | 2 |
Pseudoknot geometry with 3' bulge |
| 29 |
Motif group HL_07886.3
Basepair signature:
|
8.57 | -737.38 | 4 | 3 |
|
| 30 |
Motif group HL_57875.1
Basepair signature:
|
8.57 | -1594.40 | 3 | 3 |
|
| 31 |
Motif group HL_46501.1
Basepair signature:
|
8.57 | -2177.07 | 3 | 3 |
|
| 32 |
Motif group HL_55195.3
Basepair signature:
|
8.57 | -2185.96 | 3 | 2 |
|
| 33 |
Motif group HL_57863.1
Basepair signature:
|
2.86 | -145.46 | 7 | 6 |
G-quadruplex fragment |
| 34 |
Motif group HL_66853.7
Basepair signature:
|
2.86 | -163.26 | 5 | 5 |
|
| 35 |
Motif group HL_77436.5
Basepair signature:
|
2.86 | -195.83 | 4 | 2 |
T-loop related |
| 36 |
Motif group HL_01609.3
Basepair signature:
|
2.86 | -198.99 | 4 | 3 |
T-loop with 2 bulged bases not stacked |
| 37 |
Motif group HL_04259.3
Basepair signature:
|
2.86 | -221.49 | 4 | 2 |
GNRA with extra cWW |
| 38 |
Motif group HL_20535.2
Basepair signature:
|
2.86 | -476.25 | 4 | 4 |
|
| 39 |
Motif group HL_73255.1
Basepair signature:
|
2.86 | -584.59 | 7 | 6 |
|
| 40 |
Motif group HL_27670.2
Basepair signature:
|
2.86 | -1283.47 | 5 | 3 |
T-loop with unstacked turn |
| 41 |
Motif group HL_13189.1
Basepair signature:
|
2.86 | -1600.80 | 3 | 4 |
|
| 42 |
Motif group HL_70782.2
Basepair signature:
|
2.86 | -2174.49 | 4 | 3 |
|
| 43 |
Motif group HL_81100.2
Basepair signature:
|
2.86 | -2807.36 | 5 | 4 |
|
| 44 |
Motif group HL_85993.1
Basepair signature:
|
2.86 | -4671.18 | 5 | 4 |
|
| 45 |
Motif group HL_50860.2
Basepair signature:
|
0.00 | -142.10 | 4 | 4 |
|
| 46 |
Motif group HL_98864.1
Basepair signature:
|
0.00 | -142.21 | 7 | 5 |
T-loop with unstacked turn |
| 47 |
Motif group HL_02887.3
Basepair signature:
|
0.00 | -143.75 | 7 | 5 |
T-loop with 3 stacked bulged bases |
| 48 |
Motif group HL_68257.1
Basepair signature:
|
0.00 | -147.48 | 7 | 5 |
|
| 49 |
Motif group HL_93438.2
Basepair signature:
|
0.00 | -149.30 | 5 | 4 |
|
| 50 |
Motif group HL_86012.1
Basepair signature:
|
0.00 | -152.33 | 7 | 5 |
T-loop with unstacked turn |
| 51 |
Motif group HL_20167.2
Basepair signature:
|
0.00 | -155.27 | 5 | 3 |
|
| 52 |
Motif group HL_26934.1
Basepair signature:
|
0.00 | -163.46 | 7 | 5 |
|
| 53 |
Motif group HL_04642.1
Basepair signature:
|
0.00 | -164.50 | 7 | 6 |
tRNA D-loop |
| 54 |
Motif group HL_73266.9
Basepair signature:
|
0.00 | -164.98 | 4 | 4 |
|
| 55 |
Motif group HL_61996.2
Basepair signature:
|
0.00 | -166.76 | 6 | 4 |
|
| 56 |
Motif group HL_41543.1
Basepair signature:
|
0.00 | -166.85 | 8 | 7 |
|
| 57 |
Motif group HL_86769.4
Basepair signature:
|
0.00 | -166.92 | 5 | 3 |
|
| 58 |
Motif group HL_18423.1
Basepair signature:
|
0.00 | -167.49 | 7 | 5 |
|
| 59 |
Motif group HL_83808.4
Basepair signature:
|
0.00 | -168.07 | 8 | 6 |
Pseudoknot |
| 60 |
Motif group HL_90620.1
Basepair signature:
|
0.00 | -171.45 | 6 | 6 |
|
| 61 |
Motif group HL_41464.2
Basepair signature:
|
0.00 | -172.48 | 5 | 4 |
|
| 62 |
Motif group HL_74379.3
Basepair signature:
|
0.00 | -173.15 | 7 | 6 |
|
| 63 |
Motif group HL_41902.1
Basepair signature:
|
0.00 | -173.58 | 8 | 7 |
|
| 64 |
Motif group HL_20743.5
Basepair signature:
|
0.00 | -174.75 | 5 | 4 |
|
| 65 |
Motif group HL_87553.1
Basepair signature:
|
0.00 | -180.62 | 4 | 3 |
|
| 66 |
Motif group HL_81545.2
Basepair signature:
|
0.00 | -182.17 | 6 | 5 |
|
| 67 |
Motif group HL_36335.1
Basepair signature:
|
0.00 | -182.47 | 6 | 5 |
|
| 68 |
Motif group HL_16991.1
Basepair signature:
|
0.00 | -185.23 | 8 | 8 |
G-quadruplex fragment |
| 69 |
Motif group HL_67079.1
Basepair signature:
|
0.00 | -185.37 | 7 | 6 |
|
| 70 |
Motif group HL_70658.1
Basepair signature:
|
0.00 | -186.14 | 9 | 7 |
|
| 71 |
Motif group HL_78347.4
Basepair signature:
|
0.00 | -188.42 | 5 | 3 |
|
| 72 |
Motif group HL_60266.1
Basepair signature:
|
0.00 | -191.26 | 7 | 6 |
|
| 73 |
Motif group HL_75293.5
Basepair signature:
|
0.00 | -192.67 | 6 | 4 |
|
| 74 |
Motif group HL_86109.1
Basepair signature:
|
0.00 | -193.74 | 9 | 7 |
|
| 75 |
Motif group HL_01962.2
Basepair signature:
|
0.00 | -198.61 | 7 | 6 |
|
| 76 |
Motif group HL_23509.1
Basepair signature:
|
0.00 | -199.22 | 9 | 8 |
|
| 77 |
Motif group HL_49941.1
Basepair signature:
|
0.00 | -200.71 | 8 | 7 |
tRNA D-loop |
| 78 |
Motif group HL_98252.1
Basepair signature:
|
0.00 | -201.47 | 9 | 7 |
|
| 79 |
Motif group HL_77082.1
Basepair signature:
|
0.00 | -202.18 | 3 | 3 |
Pseudoknot geometry |
| 80 |
Motif group HL_84299.4
Basepair signature:
|
0.00 | -203.40 | 5 | 4 |
|
| 81 |
Motif group HL_40252.4
Basepair signature:
|
0.00 | -203.44 | 6 | 6 |
|
| 82 |
Motif group HL_28252.8
Basepair signature:
|
0.00 | -203.82 | 5 | 3 |
T-loop with 2 stacked bulged bases |
| 83 |
Motif group HL_64690.6
Basepair signature:
|
0.00 | -209.78 | 5 | 4 |
|
| 84 |
Motif group HL_28075.1
Basepair signature:
|
0.00 | -215.63 | 4 | 3 |
|
| 85 |
Motif group HL_81205.3
Basepair signature:
|
0.00 | -216.86 | 9 | 8 |
|
| 86 |
Motif group HL_53504.3
Basepair signature:
|
0.00 | -217.52 | 6 | 4 |
|
| 87 |
Motif group HL_84847.1
Basepair signature:
|
0.00 | -217.78 | 10 | 8 |
|
| 88 |
Motif group HL_08602.1
Basepair signature:
|
0.00 | -219.17 | 9 | 9 |
|
| 89 |
Motif group HL_07583.1
Basepair signature:
|
0.00 | -223.97 | 10 | 8 |
|
| 90 |
Motif group HL_81538.2
Basepair signature:
|
0.00 | -226.28 | 4 | 2 |
GNRA with tandem sheared |
| 91 |
Motif group HL_68767.1
Basepair signature:
|
0.00 | -228.75 | 9 | 7 |
tRNA D-loop |
| 92 |
Motif group HL_04171.7
Basepair signature:
|
0.00 | -232.12 | 8 | 6 |
|
| 93 |
Motif group HL_74055.2
Basepair signature:
|
0.00 | -233.22 | 10 | 9 |
|
| 94 |
Motif group HL_73247.1
Basepair signature:
|
0.00 | -240.57 | 10 | 9 |
Pseudoknot geometry |
| 95 |
Motif group HL_98870.1
Basepair signature:
|
0.00 | -255.46 | 10 | 8 |
|
| 96 |
Motif group HL_91641.1
Basepair signature:
|
0.00 | -267.50 | 12 | 10 |
|
| 97 |
Motif group HL_14757.1
Basepair signature:
|
0.00 | -271.23 | 13 | 11 |
|
| 98 |
Motif group HL_13971.1
Basepair signature:
|
0.00 | -307.52 | 11 | 9 |
|
| 99 |
Motif group HL_51921.1
Basepair signature:
|
0.00 | -345.69 | 16 | 14 |
|
| 100 |
Motif group HL_25847.2
Basepair signature:
|
0.00 | -385.55 | 7 | 6 |
|
| 101 |
Motif group HL_45175.1
Basepair signature:
|
0.00 | -399.43 | 6 | 6 |
tRNA D-loop |
| 102 |
Motif group HL_50537.6
Basepair signature:
|
0.00 | -404.44 | 5 | 4 |
tRNA anticodon loop with synthetase |
| 103 |
Motif group HL_13529.1
Basepair signature:
|
0.00 | -412.61 | 5 | 4 |
|
| 104 |
Motif group HL_92488.1
Basepair signature:
|
0.00 | -419.74 | 12 | 10 |
|
| 105 |
Motif group HL_10540.1
Basepair signature:
|
0.00 | -437.11 | 4 | 3 |
|
| 106 |
Motif group HL_02483.1
Basepair signature:
|
0.00 | -441.69 | 8 | 6 |
|
| 107 |
Motif group HL_89881.5
Basepair signature:
|
0.00 | -461.45 | 8 | 7 |
|
| 108 |
Motif group HL_06226.4
Basepair signature:
|
0.00 | -463.02 | 7 | 6 |
|
| 109 |
Motif group HL_18978.1
Basepair signature:
|
0.00 | -468.56 | 8 | 7 |
|
| 110 |
Motif group HL_45785.1
Basepair signature:
|
0.00 | -471.12 | 9 | 7 |
|
| 111 |
Motif group HL_87463.1
Basepair signature:
|
0.00 | -471.59 | 8 | 6 |
|
| 112 |
Motif group HL_91939.2
Basepair signature:
|
0.00 | -476.94 | 7 | 6 |
|
| 113 |
Motif group HL_05304.3
Basepair signature:
|
0.00 | -479.53 | 9 | 7 |
|
| 114 |
Motif group HL_42046.2
Basepair signature:
|
0.00 | -479.70 | 5 | 4 |
|
| 115 |
Motif group HL_18565.1
Basepair signature:
|
0.00 | -487.81 | 5 | 3 |
|
| 116 |
Motif group HL_97756.2
Basepair signature:
|
0.00 | -492.48 | 10 | 9 |
|
| 117 |
Motif group HL_23010.1
Basepair signature:
|
0.00 | -512.93 | 6 | 6 |
|
| 118 |
Motif group HL_02581.1
Basepair signature:
|
0.00 | -515.35 | 10 | 9 |
tRNA D-loop |
| 119 |
Motif group HL_53454.2
Basepair signature:
|
0.00 | -586.53 | 6 | 4 |
|
| 120 |
Motif group HL_89567.2
Basepair signature:
|
0.00 | -615.35 | 4 | 3 |
|
| 121 |
Motif group HL_58224.1
Basepair signature:
|
0.00 | -650.89 | 7 | 6 |
|
| 122 |
Motif group HL_07480.2
Basepair signature:
|
0.00 | -659.22 | 8 | 7 |
|
| 123 |
Motif group HL_04641.1
Basepair signature:
|
0.00 | -665.79 | 6 | 5 |
|
| 124 |
Motif group HL_06059.6
Basepair signature:
|
0.00 | -672.38 | 4 | 3 |
tRNA anticodon loop |
| 125 |
Motif group HL_86870.2
Basepair signature:
|
0.00 | -743.40 | 3 | 3 |
|
| 126 |
Motif group HL_25061.1
Basepair signature:
|
0.00 | -781.67 | 7 | 5 |
|
| 127 |
Motif group HL_34964.1
Basepair signature:
|
0.00 | -801.43 | 9 | 7 |
|
| 128 |
Motif group HL_15802.1
Basepair signature:
|
0.00 | -841.81 | 7 | 5 |
|
| 129 |
Motif group HL_88205.2
Basepair signature:
|
0.00 | -885.07 | 5 | 4 |
|
| 130 |
Motif group HL_22584.6
Basepair signature:
|
0.00 | -898.52 | 3 | 2 |
Fab BL3-6 binding hairpin with tSW |
| 131 |
Motif group HL_21372.1
Basepair signature:
|
0.00 | -939.70 | 6 | 4 |
|
| 132 |
Motif group HL_37344.1
Basepair signature:
|
0.00 | -959.26 | 5 | 4 |
|
| 133 |
Motif group HL_99748.1
Basepair signature:
|
0.00 | -1005.25 | 5 | 4 |
Other HL |
| 134 |
Motif group HL_87954.2
Basepair signature:
|
0.00 | -1034.07 | 3 | 2 |
|
| 135 |
Motif group HL_34617.5
Basepair signature:
|
0.00 | -1047.33 | 3 | 2 |
UNCG |
| 136 |
Motif group HL_08100.1
Basepair signature:
|
0.00 | -1069.41 | 5 | 3 |
|
| 137 |
Motif group HL_47787.2
Basepair signature:
|
0.00 | -1072.94 | 3 | 2 |
|
| 138 |
Motif group HL_30068.2
Basepair signature:
|
0.00 | -1073.29 | 4 | 2 |
|
| 139 |
Motif group HL_47854.1
Basepair signature:
|
0.00 | -1074.99 | 4 | 4 |
|
| 140 |
Motif group HL_33983.1
Basepair signature:
|
0.00 | -1097.47 | 6 | 4 |
|
| 141 |
Motif group HL_10453.3
Basepair signature:
|
0.00 | -1170.15 | 4 | 2 |
tRNA anticodon loop |
| 142 |
Motif group HL_37369.2
Basepair signature:
|
0.00 | -1245.60 | 5 | 3 |
|
| 143 |
Motif group HL_89893.1
Basepair signature:
|
0.00 | -1274.67 | 5 | 4 |
|
| 144 |
Motif group HL_25967.2
Basepair signature:
|
0.00 | -1330.77 | 6 | 4 |
|
| 145 |
Motif group HL_27483.1
Basepair signature:
|
0.00 | -1369.95 | 4 | 5 |
|
| 146 |
Motif group HL_02817.2
Basepair signature:
|
0.00 | -1578.13 | 4 | 4 |
|
| 147 |
Motif group HL_43517.1
Basepair signature:
|
0.00 | -1642.01 | 4 | 4 |
|
| 148 |
Motif group HL_00914.1
Basepair signature:
|
0.00 | -1652.61 | 4 | 3 |
|
| 149 |
Motif group HL_31585.4
Basepair signature:
|
0.00 | -1671.17 | 3 | 2 |
Purine riboswitch |
| 150 |
Motif group HL_93383.1
Basepair signature:
|
0.00 | -1779.53 | 5 | 4 |
|
| 151 |
Motif group HL_15574.1
Basepair signature:
|
0.00 | -1959.96 | 4 | 3 |
|
| 152 |
Motif group HL_12870.1
Basepair signature:
|
0.00 | -1961.44 | 9 | 7 |
|
| 153 |
Motif group HL_93616.2
Basepair signature:
|
0.00 | -2138.87 | 8 | 6 |
tRNA D-loop |
| 154 |
Motif group HL_69752.2
Basepair signature:
|
0.00 | -2192.60 | 5 | 3 |
|
| 155 |
Motif group HL_32346.4
Basepair signature:
|
0.00 | -2196.66 | 3 | 3 |
|
| 156 |
Motif group HL_22135.1
Basepair signature:
|
0.00 | -2199.65 | 3 | 3 |
|
| 157 |
Motif group HL_78677.1
Basepair signature:
|
0.00 | -2200.38 | 4 | 4 |
|
| 158 |
Motif group HL_48778.2
Basepair signature:
|
0.00 | -2201.20 | 2 | 3 |
Mini UNCG |
| 159 |
Motif group HL_85434.1
Basepair signature:
|
0.00 | -2226.46 | 8 | 6 |
|
| 160 |
Motif group HL_35941.1
Basepair signature:
|
0.00 | -2236.52 | 5 | 5 |
|
| 161 |
Motif group HL_32392.1
Basepair signature:
|
0.00 | -2241.55 | 5 | 5 |
|
| 162 |
Motif group HL_60914.1
Basepair signature:
|
0.00 | -2248.29 | 4 | 5 |
|
| 163 |
Motif group HL_94980.1
Basepair signature:
|
0.00 | -2294.78 | 5 | 5 |
|
| 164 |
Motif group HL_89199.2
Basepair signature:
|
0.00 | -2485.50 | 4 | 4 |
Mini UNCG |
| 165 |
Motif group HL_80599.2
Basepair signature:
|
0.00 | -2528.71 | 6 | 5 |
|
| 166 |
Motif group HL_76094.1
Basepair signature:
|
0.00 | -2563.10 | 4 | 3 |
|
| 167 |
Motif group HL_99769.3
Basepair signature:
|
0.00 | -2564.71 | 7 | 7 |
|
| 168 |
Motif group HL_11542.1
Basepair signature:
|
0.00 | -2646.24 | 8 | 7 |
|
| 169 |
Motif group HL_29129.3
Basepair signature:
|
0.00 | -2650.19 | 8 | 6 |
|
| 170 |
Motif group HL_32735.2
Basepair signature:
|
0.00 | -2688.25 | 5 | 3 |
|
| 171 |
Motif group HL_29966.1
Basepair signature:
|
0.00 | -2809.08 | 4 | 4 |
|
| 172 |
Motif group HL_65313.1
Basepair signature:
|
0.00 | -2829.77 | 5 | 4 |
|
| 173 |
Motif group HL_26631.1
Basepair signature:
|
0.00 | -2849.87 | 4 | 4 |
|
| 174 |
Motif group HL_38649.1
Basepair signature:
|
0.00 | -2852.38 | 8 | 6 |
|
| 175 |
Motif group HL_86883.1
Basepair signature:
|
0.00 | -2855.88 | 5 | 4 |
|
| 176 |
Motif group HL_55436.1
Basepair signature:
|
0.00 | -3122.08 | 5 | 4 |
|
| 177 |
Motif group HL_33074.4
Basepair signature:
|
0.00 | -3154.69 | 9 | 8 |
U1 small nuclear ribonucleoprotein A binding hairpin |
| 178 |
Motif group HL_89346.1
Basepair signature:
|
0.00 | -3191.27 | 14 | 12 |
|
| 179 |
Motif group HL_10456.1
Basepair signature:
|
0.00 | -3253.18 | 13 | 11 |
|
| 180 |
Motif group HL_00317.1
Basepair signature:
|
0.00 | -3281.67 | 15 | 13 |
|
| 181 |
Motif group HL_66482.1
Basepair signature:
|
0.00 | -3292.46 | 13 | 11 |
|
| 182 |
Motif group HL_59564.1
Basepair signature:
|
0.00 | -3313.91 | 15 | 13 |
|
| 183 |
Motif group HL_99324.1
Basepair signature:
|
0.00 | -3338.81 | 12 | 11 |
|
| 184 |
Motif group HL_97733.1
Basepair signature:
|
0.00 | -3369.94 | 8 | 6 |
|
| 185 |
Motif group HL_80008.1
Basepair signature:
|
0.00 | -3437.20 | 5 | 4 |
|
| 186 |
Motif group HL_72628.1
Basepair signature:
|
0.00 | -3448.99 | 5 | 3 |
|
| 187 |
Motif group HL_85461.1
Basepair signature:
|
0.00 | -3569.26 | 15 | 13 |
|
| 188 |
Motif group HL_08510.1
Basepair signature:
|
0.00 | -3606.81 | 9 | 7 |
|
| 189 |
Motif group HL_60293.1
Basepair signature:
|
0.00 | -3623.91 | 17 | 17 |
G-quadruplex |
| 190 |
Motif group HL_59330.1
Basepair signature:
|
0.00 | -3677.89 | 7 | 5 |
|
| 191 |
Motif group HL_50851.1
Basepair signature:
|
0.00 | -3713.49 | 9 | 8 |
G-quadruplex fragment |
| 192 |
Motif group HL_21400.1
Basepair signature:
|
0.00 | -3737.21 | 19 | 18 |
G-quadruplex |
| 193 |
Motif group HL_38046.1
Basepair signature:
|
0.00 | -3760.33 | 6 | 5 |
|
| 194 |
Motif group HL_12758.3
Basepair signature:
|
0.00 | -3760.70 | 20 | 18 |
G-quadruplex |
| 195 |
Motif group HL_85367.2
Basepair signature:
|
0.00 | -3809.49 | 5 | 4 |
|
| 196 |
Motif group HL_83632.1
Basepair signature:
|
0.00 | -3921.40 | 4 | 3 |
tRNA anticodon loop |
| 197 |
Motif group HL_20751.2
Basepair signature:
|
0.00 | -3937.89 | 9 | 9 |
|
| 198 |
Motif group HL_35354.1
Basepair signature:
|
0.00 | -3954.47 | 20 | 18 |
|
| 199 |
Motif group HL_73183.1
Basepair signature:
|
0.00 | -3954.58 | 10 | 8 |
Pseudoknot geometry with G-bulge |
| 200 |
Motif group HL_04725.1
Basepair signature:
|
0.00 | -3994.46 | 9 | 8 |
|
| 201 |
Motif group HL_07903.1
Basepair signature:
|
0.00 | -4005.29 | 11 | 10 |
|
| 202 |
Motif group HL_31581.6
Basepair signature:
|
0.00 | -4027.71 | 9 | 8 |
|
| 203 |
Motif group HL_63355.1
Basepair signature:
|
0.00 | -4053.97 | 9 | 8 |
|
| 204 |
Motif group HL_88364.2
Basepair signature:
|
0.00 | -4075.15 | 12 | 12 |
|
| 205 |
Motif group HL_73916.1
Basepair signature:
|
0.00 | -4091.31 | 34 | 33 |
|
| 206 |
Motif group HL_81312.1
Basepair signature:
|
0.00 | -4200.17 | 9 | 7 |
|
| 207 |
Motif group HL_38808.1
Basepair signature:
|
0.00 | -4274.14 | 6 | 4 |
|
| 208 |
Motif group HL_67407.5
Basepair signature:
|
0.00 | -4293.67 | 7 | 6 |
|
| 209 |
Motif group HL_88558.1
Basepair signature:
|
0.00 | -4380.24 | 8 | 6 |
|
| 210 |
Motif group HL_01255.1
Basepair signature:
|
0.00 | -4436.55 | 8 | 7 |
|
| 211 |
Motif group HL_15118.1
Basepair signature:
|
0.00 | -4456.09 | 9 | 8 |
|
| 212 |
Motif group HL_55305.1
Basepair signature:
|
0.00 | -4481.69 | 8 | 7 |
|
| 213 |
Motif group HL_23115.1
Basepair signature:
|
0.00 | -4488.79 | 8 | 7 |
tRNA D-loop |
| 214 |
Motif group HL_94376.1
Basepair signature:
|
0.00 | -4503.27 | 7 | 6 |
Pseudoknot geometry |
| 215 |
Motif group HL_19210.3
Basepair signature:
|
0.00 | -4525.30 | 6 | 5 |
|
| 216 |
Motif group HL_91503.7
Basepair signature:
|
0.00 | -4534.01 | 7 | 5 |
|
| 217 |
Motif group HL_78284.1
Basepair signature:
|
0.00 | -4604.94 | 7 | 6 |
|
| 218 |
Motif group HL_16398.2
Basepair signature:
|
0.00 | -4614.88 | 9 | 7 |
|
| 219 |
Motif group HL_51447.1
Basepair signature:
|
0.00 | -4705.10 | 5 | 4 |
|
| 220 |
Motif group HL_80411.1
Basepair signature:
|
0.00 | -4716.43 | 8 | 7 |
tRNA D-loop |
| 221 |
Motif group HL_68572.1
Basepair signature:
|
0.00 | -4761.74 | 9 | 7 |
|
| 222 |
Motif group HL_29762.1
Basepair signature:
|
0.00 | -4775.22 | 8 | 6 |
|
| 223 |
Motif group HL_47732.1
Basepair signature:
|
0.00 | -4786.01 | 9 | 7 |
|
| 224 |
Motif group HL_64292.1
Basepair signature:
|
0.00 | -4840.26 | 12 | 10 |
|
| 225 |
Motif group HL_50779.4
Basepair signature:
|
0.00 | -4864.49 | 6 | 4 |
|
| 226 |
Motif group HL_70751.1
Basepair signature:
|
0.00 | -4931.01 | 7 | 6 |
|
| 227 |
Motif group HL_77600.2
Basepair signature:
|
0.00 | -4934.97 | 5 | 4 |
|
| 228 |
Motif group HL_93135.1
Basepair signature:
|
0.00 | -5016.04 | 8 | 7 |
Pseudoknot |
| 229 |
Motif group HL_36684.4
Basepair signature:
|
0.00 | -5067.84 | 7 | 5 |
|
| 230 |
Motif group HL_24792.1
Basepair signature:
|
0.00 | -5078.55 | 8 | 6 |
|
| 231 |
Motif group HL_69139.1
Basepair signature:
|
0.00 | -5116.73 | 8 | 7 |
|
| 232 |
Motif group HL_29958.1
Basepair signature:
|
0.00 | -5135.83 | 10 | 9 |
|
| 233 |
Motif group HL_50418.1
Basepair signature:
|
0.00 | -5179.82 | 7 | 6 |
|
| 234 |
Motif group HL_30680.3
Basepair signature:
|
0.00 | -5221.29 | 5 | 3 |
Pseudoknot geometry |
| 235 |
Motif group HL_35677.3
Basepair signature:
|
0.00 | -5267.01 | 7 | 5 |
|
| 236 |
Motif group HL_42998.2
Basepair signature:
|
0.00 | -5267.78 | 4 | 2 |
|
| 237 |
Motif group HL_99040.1
Basepair signature:
|
0.00 | -5348.86 | 6 | 5 |
|
| 238 |
Motif group HL_74292.1
Basepair signature:
|
0.00 | -5385.05 | 5 | 4 |
|
| 239 |
Motif group HL_93324.4
Basepair signature:
|
0.00 | -5507.04 | 3 | 2 |
Pseudoknot geometry |
| 240 |
Motif group HL_78197.1
Basepair signature:
|
0.00 | -5521.05 | 5 | 3 |
|
| 241 |
Motif group HL_39243.1
Basepair signature:
|
0.00 | -5785.24 | 3 | 3 |
|
| 242 |
Motif group HL_99867.1
Basepair signature:
|
0.00 | -6002.19 | 6 | 5 |
|
| 243 |
Motif group HL_59735.5
Basepair signature:
|
0.00 | -6064.14 | 3 | 2 |
|
| 244 |
Motif group HL_20781.1
Basepair signature:
|
0.00 | -6144.50 | 7 | 6 |
|
| 245 |
Motif group HL_67667.2
Basepair signature:
|
0.00 | -6298.44 | 6 | 5 |
|
| 246 |
Motif group HL_80362.1
Basepair signature:
|
0.00 | -6556.24 | 6 | 4 |
|
| 247 |
Motif group HL_58539.1
Basepair signature:
|
0.00 | -6849.89 | 12 | 10 |
|
| 248 |
Motif group HL_80241.1
Basepair signature:
|
0.00 | -7282.95 | 6 | 4 |
|
| 249 |
Motif group HL_22622.1
Basepair signature:
|
0.00 | -7369.83 | 5 | 5 |
|
| 250 |
Motif group HL_09452.1
Basepair signature:
|
0.00 | -7872.17 | 6 | 4 |
|
| 251 |
Motif group HL_97983.1
Basepair signature:
|
0.00 | -7953.44 | 8 | 6 |
|
| 252 |
Motif group HL_09260.2
Basepair signature:
|
0.00 | -9999.00 | 8 | 6 |
tRNA D-loop |
| 253 |
Motif group HL_07951.3
Basepair signature:
|
0.00 | -9999.00 | 5 | 4 |
tRNA D-loop |