JAR3D
Query RF02032-CCF-3.98 completed
Run on Motif Atlas Version
using the Rfam secondary structure. Run with the CaCoFold secondary structure.
Rfam family RF02032 maps to these 73 chains: 9L0R|1|A, 9L0R|1|B, 9L0R|1|C, 9L0R|1|D, 9L0R|1|E, 9L0R|1|F, 9L0R|1|G, 9L0R|1|H, 9L0R|1|I, 9L0R|1|J, 9L0R|1|K, 9L0R|1|L, 9LEC|1|J, 9LEE|1|A, 9LEE|1|B, 9LEE|1|C, 9LEE|1|D, 9LEE|1|E, 9LEE|1|F, 9LEE|1|G, 9LEE|1|H, 9LEE|1|I, 9LEE|1|J, 9LEL|1|J, 9LEM|1|A, 9LEM|1|B, 9LEM|1|C, 9LEM|1|D, 9LEM|1|E, 9LEM|1|F, 9LEM|1|G, 9LEM|1|H, 9LEM|1|I, 9LEM|1|J, 9LHK|1|G, 9LHL|1|A, 9LHL|1|B, 9LHL|1|C, 9LHL|1|D, 9LHL|1|E, 9LHL|1|F, 9LHL|1|G, 9LHL|1|H, 9LHL|1|I, 9LHL|1|J, 9LHL|1|K, 9LHL|1|L, 9LHL|1|M, 9LHL|1|N, 9LMF|1|A, 9LMF|1|B, 9LMF|1|C, 9LMF|1|D, 9LMF|1|E, 9LMF|1|F, 9LMF|1|G, 9LMF|1|H, 9LMF|1|I, 9LMF|1|J, 9MEE|1|A, 9MEE|1|B, 9MEE|1|C, 9MEE|1|D, 9MEE|1|E, 9MEE|1|F, 9MEE|1|G, 9MEE|1|H, 9MEE|1|I, 9MEE|1|J, 9MEE|1|K, 9MEE|1|L, 9MEE|1|M, 9MEE|1|N See more about them at RNA 3D Hub by filtering on the chain or the Rfam family.
Loop 26 Hairpin loop
Column numbers: 551-565 - View nucleotides in PDB file(s)
Scored sequences and counts
-ACA----------- 4
-ACU----------- 3
G----CAAG---GUG 2
-UCAA---------- 2
-ACC----------- 2
-UAG----------- 2
G----UCGCACCCUA 1
A----GCUG--CCGG 1
U----AGCA--CUAG 1
C----GCAU---GGA 1
AAAC-A--------A 1
AUUCAA--------- 1
C----CAC-----CG 1
G----UAG-----AA 1
U-UAGU--------A 1
U-UAGU--------C 1
CUACG---------- 1
GAUAU---------- 1
-ACUA---------- 1
-GAAA---------- 1
-AAA----------- 1
-AAC----------- 1
-CAC----------- 1
-GAA----------- 1
-UAA----------- 1
-UCA----------- 1
Click on headings to reorder table
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group HL_75660.5
Basepair signature:
|
37.14 | -5218.25 | 2 | 1 |
|
| 2 |
Motif group HL_32346.4
Basepair signature:
|
22.86 | -369.39 | 3 | 2 |
|
| 3 |
Motif group HL_56334.1
Basepair signature:
|
22.86 | -373.76 | 3 | 2 |
Mini UNCG |
| 4 |
Motif group HL_70782.2
Basepair signature:
|
20.00 | -50.76 | 4 | 2 |
|
| 5 |
Motif group HL_04783.2
Basepair signature:
|
20.00 | -74.89 | 3 | 2 |
|
| 6 |
Motif group HL_53890.2
Basepair signature:
|
17.14 | -74.24 | 3 | 2 |
|
| 7 |
Motif group HL_48778.2
Basepair signature:
|
17.14 | -74.63 | 2 | 1 |
Mini UNCG |
| 8 |
Motif group HL_13189.1
Basepair signature:
|
17.14 | -110.69 | 4 | 3 |
|
| 9 |
Motif group HL_56131.2
Basepair signature:
|
14.29 | -92.06 | 3 | 2 |
|
| 10 |
Motif group HL_38901.2
Basepair signature:
|
11.43 | -97.87 | 3 | 2 |
tRNA D-loop |
| 11 |
Motif group HL_37824.7
Basepair signature:
|
11.43 | -178.45 | 3 | 1 |
GNRA |
| 12 |
Motif group HL_35941.1
Basepair signature:
|
11.43 | -378.66 | 4 | 2 |
|
| 13 |
Motif group HL_62934.1
Basepair signature:
|
8.57 | -106.16 | 4 | 2 |
|
| 14 |
Motif group HL_50006.2
Basepair signature:
|
8.57 | -120.06 | 4 | 2 |
|
| 15 |
Motif group HL_78677.1
Basepair signature:
|
8.57 | -375.39 | 3 | 2 |
|
| 16 |
Motif group HL_57176.2
Basepair signature:
|
8.57 | -1303.41 | 3 | 2 |
Pseudoknot geometry with 3' bulge |
| 17 |
Motif group HL_38168.1
Basepair signature:
|
8.57 | -5249.47 | 3 | 2 |
|
| 18 |
Motif group HL_69752.2
Basepair signature:
|
8.57 | -5275.07 | 4 | 2 |
|
| 19 |
Motif group HL_65794.5
Basepair signature:
|
8.57 | -5728.45 | 3 | 2 |
Pseudoknot geometry |
| 20 |
Motif group HL_86870.2
Basepair signature:
|
5.71 | -85.92 | 3 | 2 |
|
| 21 |
Motif group HL_82710.2
Basepair signature:
|
5.71 | -103.67 | 4 | 2 |
|
| 22 |
Motif group HL_46501.1
Basepair signature:
|
5.71 | -113.92 | 4 | 3 |
|
| 23 |
Motif group HL_57875.1
Basepair signature:
|
5.71 | -123.29 | 4 | 2 |
|
| 24 |
Motif group HL_48417.5
Basepair signature:
|
5.71 | -128.27 | 3 | 2 |
|
| 25 |
Motif group HL_34617.5
Basepair signature:
|
5.71 | -147.18 | 3 | 2 |
UNCG |
| 26 |
Motif group HL_80709.3
Basepair signature:
|
5.71 | -1613.89 | 3 | 2 |
|
| 27 |
Motif group HL_86883.1
Basepair signature:
|
5.71 | -1650.46 | 4 | 3 |
|
| 28 |
Motif group HL_93535.1
Basepair signature:
|
5.71 | -5124.65 | 4 | 2 |
|
| 29 |
Motif group HL_22135.1
Basepair signature:
|
5.71 | -5478.27 | 3 | 2 |
|
| 30 |
Motif group HL_52953.3
Basepair signature:
|
5.71 | -6044.92 | 4 | 2 |
|
| 31 |
Motif group HL_22584.6
Basepair signature:
|
2.86 | -132.39 | 4 | 2 |
Fab BL3-6 binding hairpin with tSW |
| 32 |
Motif group HL_43517.1
Basepair signature:
|
2.86 | -139.53 | 4 | 3 |
|
| 33 |
Motif group HL_66103.1
Basepair signature:
|
2.86 | -142.38 | 4 | 3 |
|
| 34 |
Motif group HL_71391.1
Basepair signature:
|
2.86 | -146.55 | 4 | 3 |
|
| 35 |
Motif group HL_32392.1
Basepair signature:
|
2.86 | -152.52 | 4 | 3 |
|
| 36 |
Motif group HL_37369.2
Basepair signature:
|
2.86 | -1011.73 | 5 | 3 |
|
| 37 |
Motif group HL_29966.1
Basepair signature:
|
2.86 | -1622.43 | 5 | 3 |
|
| 38 |
Motif group HL_26631.1
Basepair signature:
|
2.86 | -1629.60 | 4 | 2 |
|
| 39 |
Motif group HL_73255.1
Basepair signature:
|
2.86 | -3337.02 | 7 | 5 |
|
| 40 |
Motif group HL_80411.1
Basepair signature:
|
2.86 | -4710.97 | 8 | 7 |
tRNA D-loop |
| 41 |
Motif group HL_59330.1
Basepair signature:
|
2.86 | -4892.81 | 6 | 4 |
|
| 42 |
Motif group HL_47787.2
Basepair signature:
|
2.86 | -5096.67 | 4 | 3 |
|
| 43 |
Motif group HL_59843.1
Basepair signature:
|
2.86 | -5199.95 | 4 | 3 |
|
| 44 |
Motif group HL_60914.1
Basepair signature:
|
2.86 | -5570.72 | 4 | 3 |
|
| 45 |
Motif group HL_93324.4
Basepair signature:
|
2.86 | -6926.45 | 5 | 3 |
Pseudoknot geometry |
| 46 |
Motif group HL_81100.2
Basepair signature:
|
2.86 | -7203.63 | 4 | 3 |
|
| 47 |
Motif group HL_07951.3
Basepair signature:
|
2.86 | -9999.00 | 6 | 5 |
tRNA D-loop |
| 48 |
Motif group HL_13963.3
Basepair signature:
|
0.00 | -118.39 | 4 | 3 |
|
| 49 |
Motif group HL_20811.4
Basepair signature:
|
0.00 | -122.23 | 4 | 3 |
tRNA D-loop |
| 50 |
Motif group HL_26934.1
Basepair signature:
|
0.00 | -122.30 | 6 | 4 |
|
| 51 |
Motif group HL_86012.1
Basepair signature:
|
0.00 | -130.26 | 7 | 5 |
T-loop with unstacked turn |
| 52 |
Motif group HL_80922.2
Basepair signature:
|
0.00 | -134.15 | 5 | 3 |
|
| 53 |
Motif group HL_50860.2
Basepair signature:
|
0.00 | -137.34 | 6 | 4 |
|
| 54 |
Motif group HL_07886.3
Basepair signature:
|
0.00 | -137.44 | 4 | 3 |
|
| 55 |
Motif group HL_02887.3
Basepair signature:
|
0.00 | -139.86 | 7 | 5 |
T-loop with 3 stacked bulged bases |
| 56 |
Motif group HL_13529.1
Basepair signature:
|
0.00 | -140.85 | 4 | 3 |
|
| 57 |
Motif group HL_20167.2
Basepair signature:
|
0.00 | -143.40 | 6 | 4 |
|
| 58 |
Motif group HL_93438.2
Basepair signature:
|
0.00 | -143.72 | 6 | 5 |
|
| 59 |
Motif group HL_83808.4
Basepair signature:
|
0.00 | -146.02 | 7 | 5 |
Pseudoknot |
| 60 |
Motif group HL_50318.1
Basepair signature:
|
0.00 | -149.78 | 6 | 4 |
|
| 61 |
Motif group HL_49922.4
Basepair signature:
|
0.00 | -152.96 | 3 | 2 |
|
| 62 |
Motif group HL_20743.5
Basepair signature:
|
0.00 | -155.85 | 6 | 5 |
|
| 63 |
Motif group HL_87954.2
Basepair signature:
|
0.00 | -156.23 | 4 | 3 |
|
| 64 |
Motif group HL_27483.1
Basepair signature:
|
0.00 | -159.26 | 4 | 3 |
|
| 65 |
Motif group HL_89567.2
Basepair signature:
|
0.00 | -162.11 | 5 | 3 |
|
| 66 |
Motif group HL_86769.4
Basepair signature:
|
0.00 | -170.15 | 5 | 3 |
|
| 67 |
Motif group HL_81545.2
Basepair signature:
|
0.00 | -172.97 | 7 | 5 |
|
| 68 |
Motif group HL_87553.1
Basepair signature:
|
0.00 | -174.53 | 4 | 3 |
|
| 69 |
Motif group HL_08100.1
Basepair signature:
|
0.00 | -175.29 | 5 | 3 |
|
| 70 |
Motif group HL_73266.9
Basepair signature:
|
0.00 | -175.69 | 6 | 5 |
|
| 71 |
Motif group HL_61996.2
Basepair signature:
|
0.00 | -178.00 | 6 | 5 |
|
| 72 |
Motif group HL_10540.1
Basepair signature:
|
0.00 | -183.43 | 5 | 4 |
|
| 73 |
Motif group HL_42046.2
Basepair signature:
|
0.00 | -184.94 | 5 | 4 |
|
| 74 |
Motif group HL_41543.1
Basepair signature:
|
0.00 | -187.62 | 9 | 7 |
|
| 75 |
Motif group HL_01609.3
Basepair signature:
|
0.00 | -191.40 | 5 | 3 |
T-loop with 2 bulged bases not stacked |
| 76 |
Motif group HL_18423.1
Basepair signature:
|
0.00 | -194.96 | 8 | 6 |
|
| 77 |
Motif group HL_67079.1
Basepair signature:
|
0.00 | -195.45 | 8 | 6 |
|
| 78 |
Motif group HL_49941.1
Basepair signature:
|
0.00 | -196.84 | 8 | 6 |
tRNA D-loop |
| 79 |
Motif group HL_25847.2
Basepair signature:
|
0.00 | -197.00 | 8 | 6 |
|
| 80 |
Motif group HL_78347.4
Basepair signature:
|
0.00 | -197.06 | 4 | 3 |
|
| 81 |
Motif group HL_28252.8
Basepair signature:
|
0.00 | -197.72 | 6 | 4 |
T-loop with 2 stacked bulged bases |
| 82 |
Motif group HL_90620.1
Basepair signature:
|
0.00 | -201.94 | 8 | 6 |
|
| 83 |
Motif group HL_41902.1
Basepair signature:
|
0.00 | -202.08 | 9 | 8 |
|
| 84 |
Motif group HL_36335.1
Basepair signature:
|
0.00 | -203.69 | 8 | 6 |
|
| 85 |
Motif group HL_04259.3
Basepair signature:
|
0.00 | -205.05 | 5 | 3 |
GNRA with extra cWW |
| 86 |
Motif group HL_41464.2
Basepair signature:
|
0.00 | -207.04 | 6 | 5 |
|
| 87 |
Motif group HL_74379.3
Basepair signature:
|
0.00 | -210.24 | 9 | 7 |
|
| 88 |
Motif group HL_28075.1
Basepair signature:
|
0.00 | -211.91 | 5 | 4 |
|
| 89 |
Motif group HL_01962.2
Basepair signature:
|
0.00 | -215.18 | 8 | 6 |
|
| 90 |
Motif group HL_77436.5
Basepair signature:
|
0.00 | -216.72 | 4 | 3 |
T-loop related |
| 91 |
Motif group HL_04171.7
Basepair signature:
|
0.00 | -218.20 | 8 | 6 |
|
| 92 |
Motif group HL_60266.1
Basepair signature:
|
0.00 | -225.25 | 8 | 6 |
|
| 93 |
Motif group HL_40252.4
Basepair signature:
|
0.00 | -227.34 | 8 | 6 |
|
| 94 |
Motif group HL_70658.1
Basepair signature:
|
0.00 | -232.11 | 10 | 8 |
|
| 95 |
Motif group HL_86109.1
Basepair signature:
|
0.00 | -242.90 | 10 | 8 |
|
| 96 |
Motif group HL_08602.1
Basepair signature:
|
0.00 | -244.85 | 10 | 8 |
|
| 97 |
Motif group HL_53504.3
Basepair signature:
|
0.00 | -251.68 | 7 | 6 |
|
| 98 |
Motif group HL_68767.1
Basepair signature:
|
0.00 | -258.34 | 10 | 8 |
tRNA D-loop |
| 99 |
Motif group HL_81205.3
Basepair signature:
|
0.00 | -259.68 | 11 | 9 |
|
| 100 |
Motif group HL_07583.1
Basepair signature:
|
0.00 | -260.28 | 10 | 8 |
|
| 101 |
Motif group HL_84847.1
Basepair signature:
|
0.00 | -262.33 | 11 | 9 |
|
| 102 |
Motif group HL_74055.2
Basepair signature:
|
0.00 | -264.88 | 11 | 10 |
|
| 103 |
Motif group HL_88205.2
Basepair signature:
|
0.00 | -268.91 | 7 | 5 |
|
| 104 |
Motif group HL_13971.1
Basepair signature:
|
0.00 | -281.13 | 11 | 9 |
|
| 105 |
Motif group HL_73247.1
Basepair signature:
|
0.00 | -309.53 | 11 | 10 |
Pseudoknot geometry |
| 106 |
Motif group HL_98870.1
Basepair signature:
|
0.00 | -315.50 | 12 | 10 |
|
| 107 |
Motif group HL_14757.1
Basepair signature:
|
0.00 | -330.39 | 14 | 13 |
|
| 108 |
Motif group HL_91641.1
Basepair signature:
|
0.00 | -345.17 | 13 | 12 |
|
| 109 |
Motif group HL_97756.2
Basepair signature:
|
0.00 | -446.40 | 11 | 10 |
|
| 110 |
Motif group HL_92488.1
Basepair signature:
|
0.00 | -512.97 | 13 | 11 |
|
| 111 |
Motif group HL_18978.1
Basepair signature:
|
0.00 | -763.50 | 7 | 6 |
|
| 112 |
Motif group HL_06226.4
Basepair signature:
|
0.00 | -792.46 | 8 | 6 |
|
| 113 |
Motif group HL_91939.2
Basepair signature:
|
0.00 | -799.49 | 8 | 6 |
|
| 114 |
Motif group HL_07480.2
Basepair signature:
|
0.00 | -807.30 | 8 | 6 |
|
| 115 |
Motif group HL_02581.1
Basepair signature:
|
0.00 | -834.21 | 11 | 10 |
tRNA D-loop |
| 116 |
Motif group HL_15802.1
Basepair signature:
|
0.00 | -859.65 | 6 | 5 |
|
| 117 |
Motif group HL_34964.1
Basepair signature:
|
0.00 | -993.79 | 8 | 6 |
|
| 118 |
Motif group HL_25967.2
Basepair signature:
|
0.00 | -1080.85 | 5 | 4 |
|
| 119 |
Motif group HL_89199.2
Basepair signature:
|
0.00 | -1456.07 | 4 | 3 |
Mini UNCG |
| 120 |
Motif group HL_65313.1
Basepair signature:
|
0.00 | -1648.96 | 5 | 4 |
|
| 121 |
Motif group HL_76094.1
Basepair signature:
|
0.00 | -1999.38 | 3 | 2 |
|
| 122 |
Motif group HL_24792.1
Basepair signature:
|
0.00 | -2025.39 | 8 | 6 |
|
| 123 |
Motif group HL_51921.1
Basepair signature:
|
0.00 | -2307.96 | 17 | 15 |
|
| 124 |
Motif group HL_98864.1
Basepair signature:
|
0.00 | -2559.19 | 7 | 5 |
T-loop with unstacked turn |
| 125 |
Motif group HL_80362.1
Basepair signature:
|
0.00 | -2563.99 | 6 | 4 |
|
| 126 |
Motif group HL_16991.1
Basepair signature:
|
0.00 | -2570.31 | 9 | 7 |
G-quadruplex fragment |
| 127 |
Motif group HL_23509.1
Basepair signature:
|
0.00 | -2578.15 | 9 | 7 |
|
| 128 |
Motif group HL_68257.1
Basepair signature:
|
0.00 | -2692.53 | 8 | 6 |
|
| 129 |
Motif group HL_57863.1
Basepair signature:
|
0.00 | -2810.97 | 7 | 5 |
G-quadruplex fragment |
| 130 |
Motif group HL_04642.1
Basepair signature:
|
0.00 | -2823.12 | 7 | 5 |
tRNA D-loop |
| 131 |
Motif group HL_93616.2
Basepair signature:
|
0.00 | -2846.18 | 8 | 6 |
tRNA D-loop |
| 132 |
Motif group HL_85434.1
Basepair signature:
|
0.00 | -2946.07 | 7 | 5 |
|
| 133 |
Motif group HL_98252.1
Basepair signature:
|
0.00 | -2993.21 | 9 | 7 |
|
| 134 |
Motif group HL_09452.1
Basepair signature:
|
0.00 | -3079.49 | 6 | 4 |
|
| 135 |
Motif group HL_66853.7
Basepair signature:
|
0.00 | -3088.74 | 6 | 5 |
|
| 136 |
Motif group HL_89881.5
Basepair signature:
|
0.00 | -3099.96 | 8 | 6 |
|
| 137 |
Motif group HL_02483.1
Basepair signature:
|
0.00 | -3134.22 | 9 | 7 |
|
| 138 |
Motif group HL_45785.1
Basepair signature:
|
0.00 | -3196.23 | 9 | 7 |
|
| 139 |
Motif group HL_05304.3
Basepair signature:
|
0.00 | -3255.46 | 10 | 8 |
|
| 140 |
Motif group HL_45175.1
Basepair signature:
|
0.00 | -3307.91 | 7 | 5 |
tRNA D-loop |
| 141 |
Motif group HL_29129.3
Basepair signature:
|
0.00 | -3340.43 | 8 | 6 |
|
| 142 |
Motif group HL_18565.1
Basepair signature:
|
0.00 | -3352.98 | 6 | 4 |
|
| 143 |
Motif group HL_33074.4
Basepair signature:
|
0.00 | -3357.96 | 9 | 7 |
U1 small nuclear ribonucleoprotein A binding hairpin |
| 144 |
Motif group HL_87463.1
Basepair signature:
|
0.00 | -3407.64 | 8 | 6 |
|
| 145 |
Motif group HL_75293.5
Basepair signature:
|
0.00 | -3424.19 | 7 | 5 |
|
| 146 |
Motif group HL_89346.1
Basepair signature:
|
0.00 | -3465.07 | 16 | 14 |
|
| 147 |
Motif group HL_10456.1
Basepair signature:
|
0.00 | -3530.41 | 15 | 13 |
|
| 148 |
Motif group HL_66482.1
Basepair signature:
|
0.00 | -3536.16 | 14 | 12 |
|
| 149 |
Motif group HL_84299.4
Basepair signature:
|
0.00 | -3575.89 | 6 | 4 |
|
| 150 |
Motif group HL_58224.1
Basepair signature:
|
0.00 | -3586.81 | 7 | 5 |
|
| 151 |
Motif group HL_99769.3
Basepair signature:
|
0.00 | -3621.09 | 8 | 7 |
|
| 152 |
Motif group HL_23010.1
Basepair signature:
|
0.00 | -3642.31 | 8 | 6 |
|
| 153 |
Motif group HL_04641.1
Basepair signature:
|
0.00 | -3739.64 | 7 | 5 |
|
| 154 |
Motif group HL_11542.1
Basepair signature:
|
0.00 | -3760.09 | 10 | 8 |
|
| 155 |
Motif group HL_64690.6
Basepair signature:
|
0.00 | -3841.29 | 6 | 4 |
|
| 156 |
Motif group HL_99748.1
Basepair signature:
|
0.00 | -3870.42 | 6 | 4 |
Other HL |
| 157 |
Motif group HL_08510.1
Basepair signature:
|
0.00 | -3898.54 | 7 | 5 |
|
| 158 |
Motif group HL_89893.1
Basepair signature:
|
0.00 | -3990.69 | 5 | 3 |
|
| 159 |
Motif group HL_99324.1
Basepair signature:
|
0.00 | -4034.18 | 14 | 12 |
|
| 160 |
Motif group HL_97733.1
Basepair signature:
|
0.00 | -4038.40 | 7 | 6 |
|
| 161 |
Motif group HL_38649.1
Basepair signature:
|
0.00 | -4039.47 | 8 | 6 |
|
| 162 |
Motif group HL_85461.1
Basepair signature:
|
0.00 | -4052.58 | 16 | 15 |
|
| 163 |
Motif group HL_80008.1
Basepair signature:
|
0.00 | -4056.91 | 6 | 5 |
|
| 164 |
Motif group HL_60293.1
Basepair signature:
|
0.00 | -4065.67 | 19 | 17 |
G-quadruplex |
| 165 |
Motif group HL_72628.1
Basepair signature:
|
0.00 | -4071.46 | 6 | 4 |
|
| 166 |
Motif group HL_21400.1
Basepair signature:
|
0.00 | -4072.12 | 20 | 18 |
G-quadruplex |
| 167 |
Motif group HL_50851.1
Basepair signature:
|
0.00 | -4075.07 | 10 | 8 |
G-quadruplex fragment |
| 168 |
Motif group HL_35354.1
Basepair signature:
|
0.00 | -4083.82 | 21 | 19 |
|
| 169 |
Motif group HL_47854.1
Basepair signature:
|
0.00 | -4083.88 | 6 | 4 |
|
| 170 |
Motif group HL_00317.1
Basepair signature:
|
0.00 | -4097.46 | 17 | 16 |
|
| 171 |
Motif group HL_93383.1
Basepair signature:
|
0.00 | -4101.20 | 6 | 5 |
|
| 172 |
Motif group HL_12758.3
Basepair signature:
|
0.00 | -4123.37 | 21 | 20 |
G-quadruplex |
| 173 |
Motif group HL_59564.1
Basepair signature:
|
0.00 | -4133.89 | 17 | 16 |
|
| 174 |
Motif group HL_55436.1
Basepair signature:
|
0.00 | -4176.95 | 7 | 5 |
|
| 175 |
Motif group HL_33983.1
Basepair signature:
|
0.00 | -4190.14 | 6 | 5 |
|
| 176 |
Motif group HL_53454.2
Basepair signature:
|
0.00 | -4196.64 | 7 | 6 |
|
| 177 |
Motif group HL_20751.2
Basepair signature:
|
0.00 | -4250.21 | 10 | 8 |
|
| 178 |
Motif group HL_21372.1
Basepair signature:
|
0.00 | -4267.41 | 6 | 5 |
|
| 179 |
Motif group HL_67407.5
Basepair signature:
|
0.00 | -4280.97 | 7 | 6 |
|
| 180 |
Motif group HL_73183.1
Basepair signature:
|
0.00 | -4290.17 | 12 | 10 |
Pseudoknot geometry with G-bulge |
| 181 |
Motif group HL_50537.6
Basepair signature:
|
0.00 | -4349.36 | 6 | 4 |
tRNA anticodon loop with synthetase |
| 182 |
Motif group HL_04725.1
Basepair signature:
|
0.00 | -4372.00 | 9 | 7 |
|
| 183 |
Motif group HL_80599.2
Basepair signature:
|
0.00 | -4412.57 | 6 | 4 |
|
| 184 |
Motif group HL_25061.1
Basepair signature:
|
0.00 | -4438.51 | 6 | 5 |
|
| 185 |
Motif group HL_23115.1
Basepair signature:
|
0.00 | -4487.07 | 8 | 7 |
tRNA D-loop |
| 186 |
Motif group HL_38046.1
Basepair signature:
|
0.00 | -4487.09 | 6 | 4 |
|
| 187 |
Motif group HL_81312.1
Basepair signature:
|
0.00 | -4494.94 | 9 | 7 |
|
| 188 |
Motif group HL_19210.3
Basepair signature:
|
0.00 | -4516.15 | 7 | 6 |
|
| 189 |
Motif group HL_85367.2
Basepair signature:
|
0.00 | -4555.28 | 5 | 4 |
|
| 190 |
Motif group HL_31581.6
Basepair signature:
|
0.00 | -4568.06 | 9 | 7 |
|
| 191 |
Motif group HL_77082.1
Basepair signature:
|
0.00 | -4570.82 | 5 | 3 |
Pseudoknot geometry |
| 192 |
Motif group HL_07903.1
Basepair signature:
|
0.00 | -4579.70 | 11 | 10 |
|
| 193 |
Motif group HL_63355.1
Basepair signature:
|
0.00 | -4635.27 | 11 | 9 |
|
| 194 |
Motif group HL_55305.1
Basepair signature:
|
0.00 | -4639.87 | 9 | 7 |
|
| 195 |
Motif group HL_06059.6
Basepair signature:
|
0.00 | -4679.32 | 5 | 4 |
tRNA anticodon loop |
| 196 |
Motif group HL_91503.7
Basepair signature:
|
0.00 | -4683.87 | 8 | 6 |
|
| 197 |
Motif group HL_37344.1
Basepair signature:
|
0.00 | -4685.94 | 5 | 4 |
|
| 198 |
Motif group HL_73916.1
Basepair signature:
|
0.00 | -4689.84 | 36 | 34 |
|
| 199 |
Motif group HL_32735.2
Basepair signature:
|
0.00 | -4698.79 | 6 | 4 |
|
| 200 |
Motif group HL_81538.2
Basepair signature:
|
0.00 | -4702.62 | 5 | 3 |
GNRA with tandem sheared |
| 201 |
Motif group HL_83632.1
Basepair signature:
|
0.00 | -4712.36 | 6 | 4 |
tRNA anticodon loop |
| 202 |
Motif group HL_88558.1
Basepair signature:
|
0.00 | -4713.89 | 9 | 7 |
|
| 203 |
Motif group HL_01255.1
Basepair signature:
|
0.00 | -4749.74 | 8 | 7 |
|
| 204 |
Motif group HL_29762.1
Basepair signature:
|
0.00 | -4773.57 | 8 | 6 |
|
| 205 |
Motif group HL_27670.2
Basepair signature:
|
0.00 | -4838.18 | 5 | 4 |
T-loop with unstacked turn |
| 206 |
Motif group HL_50779.4
Basepair signature:
|
0.00 | -4870.34 | 7 | 5 |
|
| 207 |
Motif group HL_15118.1
Basepair signature:
|
0.00 | -4885.39 | 9 | 7 |
|
| 208 |
Motif group HL_88364.2
Basepair signature:
|
0.00 | -4928.73 | 12 | 11 |
|
| 209 |
Motif group HL_94376.1
Basepair signature:
|
0.00 | -4951.40 | 8 | 6 |
Pseudoknot geometry |
| 210 |
Motif group HL_16398.2
Basepair signature:
|
0.00 | -4973.52 | 10 | 8 |
|
| 211 |
Motif group HL_93135.1
Basepair signature:
|
0.00 | -4998.98 | 8 | 6 |
Pseudoknot |
| 212 |
Motif group HL_99040.1
Basepair signature:
|
0.00 | -5069.19 | 5 | 3 |
|
| 213 |
Motif group HL_70751.1
Basepair signature:
|
0.00 | -5082.14 | 8 | 6 |
|
| 214 |
Motif group HL_47732.1
Basepair signature:
|
0.00 | -5118.13 | 9 | 7 |
|
| 215 |
Motif group HL_38808.1
Basepair signature:
|
0.00 | -5119.54 | 6 | 4 |
|
| 216 |
Motif group HL_97917.2
Basepair signature:
|
0.00 | -5136.82 | 5 | 3 |
|
| 217 |
Motif group HL_20535.2
Basepair signature:
|
0.00 | -5140.59 | 5 | 4 |
|
| 218 |
Motif group HL_02817.2
Basepair signature:
|
0.00 | -5152.79 | 5 | 4 |
|
| 219 |
Motif group HL_56676.1
Basepair signature:
|
0.00 | -5224.70 | 4 | 3 |
|
| 220 |
Motif group HL_36684.4
Basepair signature:
|
0.00 | -5226.93 | 7 | 6 |
|
| 221 |
Motif group HL_64292.1
Basepair signature:
|
0.00 | -5246.14 | 13 | 11 |
|
| 222 |
Motif group HL_42998.2
Basepair signature:
|
0.00 | -5258.24 | 5 | 3 |
|
| 223 |
Motif group HL_30068.2
Basepair signature:
|
0.00 | -5265.98 | 4 | 3 |
|
| 224 |
Motif group HL_50418.1
Basepair signature:
|
0.00 | -5333.12 | 8 | 6 |
|
| 225 |
Motif group HL_29958.1
Basepair signature:
|
0.00 | -5368.63 | 11 | 9 |
|
| 226 |
Motif group HL_74292.1
Basepair signature:
|
0.00 | -5401.08 | 7 | 6 |
|
| 227 |
Motif group HL_00914.1
Basepair signature:
|
0.00 | -5403.39 | 6 | 4 |
|
| 228 |
Motif group HL_10453.3
Basepair signature:
|
0.00 | -5451.35 | 4 | 3 |
tRNA anticodon loop |
| 229 |
Motif group HL_69139.1
Basepair signature:
|
0.00 | -5465.39 | 8 | 6 |
|
| 230 |
Motif group HL_55195.3
Basepair signature:
|
0.00 | -5577.43 | 4 | 2 |
|
| 231 |
Motif group HL_78284.1
Basepair signature:
|
0.00 | -5586.53 | 9 | 7 |
|
| 232 |
Motif group HL_35677.3
Basepair signature:
|
0.00 | -5610.49 | 7 | 5 |
|
| 233 |
Motif group HL_68572.1
Basepair signature:
|
0.00 | -5771.25 | 10 | 9 |
|
| 234 |
Motif group HL_39243.1
Basepair signature:
|
0.00 | -5780.77 | 5 | 3 |
|
| 235 |
Motif group HL_99867.1
Basepair signature:
|
0.00 | -5991.72 | 7 | 5 |
|
| 236 |
Motif group HL_28791.1
Basepair signature:
|
0.00 | -6075.89 | 5 | 3 |
|
| 237 |
Motif group HL_94980.1
Basepair signature:
|
0.00 | -6085.69 | 4 | 3 |
|
| 238 |
Motif group HL_20781.1
Basepair signature:
|
0.00 | -6141.61 | 8 | 7 |
|
| 239 |
Motif group HL_22622.1
Basepair signature:
|
0.00 | -6208.05 | 6 | 4 |
|
| 240 |
Motif group HL_85993.1
Basepair signature:
|
0.00 | -6259.26 | 5 | 4 |
|
| 241 |
Motif group HL_51447.1
Basepair signature:
|
0.00 | -6283.67 | 5 | 4 |
|
| 242 |
Motif group HL_67667.2
Basepair signature:
|
0.00 | -6356.24 | 6 | 4 |
|
| 243 |
Motif group HL_31585.4
Basepair signature:
|
0.00 | -6358.90 | 5 | 3 |
Purine riboswitch |
| 244 |
Motif group HL_15574.1
Basepair signature:
|
0.00 | -6368.91 | 5 | 3 |
|
| 245 |
Motif group HL_78197.1
Basepair signature:
|
0.00 | -6592.44 | 5 | 3 |
|
| 246 |
Motif group HL_12870.1
Basepair signature:
|
0.00 | -6701.97 | 10 | 9 |
|
| 247 |
Motif group HL_80241.1
Basepair signature:
|
0.00 | -7049.23 | 6 | 5 |
|
| 248 |
Motif group HL_97983.1
Basepair signature:
|
0.00 | -7230.68 | 7 | 6 |
|
| 249 |
Motif group HL_58539.1
Basepair signature:
|
0.00 | -7361.56 | 13 | 11 |
|
| 250 |
Motif group HL_77600.2
Basepair signature:
|
0.00 | -7731.55 | 5 | 4 |
|
| 251 |
Motif group HL_30680.3
Basepair signature:
|
0.00 | -8119.80 | 4 | 3 |
Pseudoknot geometry |
| 252 |
Motif group HL_59735.5
Basepair signature:
|
0.00 | -8139.79 | 4 | 3 |
|
| 253 |
Motif group HL_09260.2
Basepair signature:
|
0.00 | -9999.00 | 8 | 7 |
tRNA D-loop |