JAR3D
Query RF02032-CCF-3.98 completed
Run on Motif Atlas Version
using the Rfam secondary structure. Run with the CaCoFold secondary structure.
Rfam family RF02032 maps to these 73 chains: 9L0R|1|A, 9L0R|1|B, 9L0R|1|C, 9L0R|1|D, 9L0R|1|E, 9L0R|1|F, 9L0R|1|G, 9L0R|1|H, 9L0R|1|I, 9L0R|1|J, 9L0R|1|K, 9L0R|1|L, 9LEC|1|J, 9LEE|1|A, 9LEE|1|B, 9LEE|1|C, 9LEE|1|D, 9LEE|1|E, 9LEE|1|F, 9LEE|1|G, 9LEE|1|H, 9LEE|1|I, 9LEE|1|J, 9LEL|1|J, 9LEM|1|A, 9LEM|1|B, 9LEM|1|C, 9LEM|1|D, 9LEM|1|E, 9LEM|1|F, 9LEM|1|G, 9LEM|1|H, 9LEM|1|I, 9LEM|1|J, 9LHK|1|G, 9LHL|1|A, 9LHL|1|B, 9LHL|1|C, 9LHL|1|D, 9LHL|1|E, 9LHL|1|F, 9LHL|1|G, 9LHL|1|H, 9LHL|1|I, 9LHL|1|J, 9LHL|1|K, 9LHL|1|L, 9LHL|1|M, 9LHL|1|N, 9LMF|1|A, 9LMF|1|B, 9LMF|1|C, 9LMF|1|D, 9LMF|1|E, 9LMF|1|F, 9LMF|1|G, 9LMF|1|H, 9LMF|1|I, 9LMF|1|J, 9MEE|1|A, 9MEE|1|B, 9MEE|1|C, 9MEE|1|D, 9MEE|1|E, 9MEE|1|F, 9MEE|1|G, 9MEE|1|H, 9MEE|1|I, 9MEE|1|J, 9MEE|1|K, 9MEE|1|L, 9MEE|1|M, 9MEE|1|N See more about them at RNA 3D Hub by filtering on the chain or the Rfam family.
Loop 28 Hairpin loop
Column numbers: 603-619 - View nucleotides in PDB file(s)
Scored sequences and counts
U---GUAAUCUCA---G 10
U---GUAUUCUCA---A 5
A---GUAGUCUCA---U 3
U---AUAGUCUCA---G 3
U---GUAUUCUCA---G 3
A---GUAAUCUCA---U 2
U---GUAGUCUCA---G 2
GGAGGUAUUCUCAGAAC 1
C---AUAGUCUCA---G 1
U---CAACACUCA---G 1
U---GUAAUCUCA---A 1
U---GUAGUCUCA---A 1
U---UUAAUCUCA---A 1
U---UUAUUCUCA---A 1
Click on headings to reorder table
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group HL_85434.1
Basepair signature:
|
77.14 | -0.71 | 4 | 2 |
|
| 2 |
Motif group HL_94376.1
Basepair signature:
|
11.43 | -22.60 | 6 | 5 |
Pseudoknot geometry |
| 3 |
Motif group HL_15118.1
Basepair signature:
|
2.86 | -40.18 | 7 | 6 |
|
| 4 |
Motif group HL_18423.1
Basepair signature:
|
2.86 | -43.32 | 6 | 5 |
|
| 5 |
Motif group HL_50418.1
Basepair signature:
|
2.86 | -202.18 | 6 | 5 |
|
| 6 |
Motif group HL_68257.1
Basepair signature:
|
0.00 | -27.66 | 5 | 4 |
|
| 7 |
Motif group HL_18978.1
Basepair signature:
|
0.00 | -35.64 | 5 | 4 |
|
| 8 |
Motif group HL_88558.1
Basepair signature:
|
0.00 | -36.31 | 6 | 4 |
|
| 9 |
Motif group HL_70658.1
Basepair signature:
|
0.00 | -40.17 | 7 | 5 |
|
| 10 |
Motif group HL_40252.4
Basepair signature:
|
0.00 | -42.51 | 6 | 5 |
|
| 11 |
Motif group HL_29762.1
Basepair signature:
|
0.00 | -43.00 | 6 | 6 |
|
| 12 |
Motif group HL_93135.1
Basepair signature:
|
0.00 | -43.97 | 7 | 5 |
Pseudoknot |
| 13 |
Motif group HL_67407.5
Basepair signature:
|
0.00 | -44.02 | 6 | 5 |
|
| 14 |
Motif group HL_89881.5
Basepair signature:
|
0.00 | -46.24 | 6 | 5 |
|
| 15 |
Motif group HL_53504.3
Basepair signature:
|
0.00 | -49.72 | 5 | 4 |
|
| 16 |
Motif group HL_01962.2
Basepair signature:
|
0.00 | -51.78 | 5 | 4 |
|
| 17 |
Motif group HL_31581.6
Basepair signature:
|
0.00 | -51.96 | 7 | 6 |
|
| 18 |
Motif group HL_53454.2
Basepair signature:
|
0.00 | -55.55 | 5 | 4 |
|
| 19 |
Motif group HL_67079.1
Basepair signature:
|
0.00 | -58.59 | 6 | 5 |
|
| 20 |
Motif group HL_45785.1
Basepair signature:
|
0.00 | -58.74 | 6 | 5 |
|
| 21 |
Motif group HL_91939.2
Basepair signature:
|
0.00 | -59.20 | 7 | 6 |
|
| 22 |
Motif group HL_55305.1
Basepair signature:
|
0.00 | -59.39 | 6 | 6 |
|
| 23 |
Motif group HL_08602.1
Basepair signature:
|
0.00 | -59.77 | 7 | 6 |
|
| 24 |
Motif group HL_98252.1
Basepair signature:
|
0.00 | -59.98 | 8 | 6 |
|
| 25 |
Motif group HL_19210.3
Basepair signature:
|
0.00 | -60.23 | 6 | 5 |
|
| 26 |
Motif group HL_35677.3
Basepair signature:
|
0.00 | -60.96 | 4 | 4 |
|
| 27 |
Motif group HL_25847.2
Basepair signature:
|
0.00 | -63.40 | 6 | 5 |
|
| 28 |
Motif group HL_91503.7
Basepair signature:
|
0.00 | -64.09 | 7 | 6 |
|
| 29 |
Motif group HL_99769.3
Basepair signature:
|
0.00 | -65.10 | 7 | 6 |
|
| 30 |
Motif group HL_49941.1
Basepair signature:
|
0.00 | -67.02 | 7 | 5 |
tRNA D-loop |
| 31 |
Motif group HL_81312.1
Basepair signature:
|
0.00 | -67.18 | 7 | 6 |
|
| 32 |
Motif group HL_02887.3
Basepair signature:
|
0.00 | -67.26 | 6 | 5 |
T-loop with 3 stacked bulged bases |
| 33 |
Motif group HL_23010.1
Basepair signature:
|
0.00 | -68.29 | 8 | 6 |
|
| 34 |
Motif group HL_69139.1
Basepair signature:
|
0.00 | -68.79 | 6 | 6 |
|
| 35 |
Motif group HL_04642.1
Basepair signature:
|
0.00 | -69.31 | 7 | 6 |
tRNA D-loop |
| 36 |
Motif group HL_41543.1
Basepair signature:
|
0.00 | -69.45 | 7 | 6 |
|
| 37 |
Motif group HL_34964.1
Basepair signature:
|
0.00 | -72.83 | 7 | 6 |
|
| 38 |
Motif group HL_38649.1
Basepair signature:
|
0.00 | -73.75 | 7 | 5 |
|
| 39 |
Motif group HL_02483.1
Basepair signature:
|
0.00 | -73.84 | 6 | 6 |
|
| 40 |
Motif group HL_07480.2
Basepair signature:
|
0.00 | -74.46 | 8 | 6 |
|
| 41 |
Motif group HL_23115.1
Basepair signature:
|
0.00 | -74.60 | 8 | 7 |
tRNA D-loop |
| 42 |
Motif group HL_33074.4
Basepair signature:
|
0.00 | -74.63 | 7 | 6 |
U1 small nuclear ribonucleoprotein A binding hairpin |
| 43 |
Motif group HL_73255.1
Basepair signature:
|
0.00 | -77.14 | 6 | 5 |
|
| 44 |
Motif group HL_06226.4
Basepair signature:
|
0.00 | -77.41 | 7 | 6 |
|
| 45 |
Motif group HL_74379.3
Basepair signature:
|
0.00 | -78.29 | 8 | 7 |
|
| 46 |
Motif group HL_83808.4
Basepair signature:
|
0.00 | -78.99 | 6 | 5 |
Pseudoknot |
| 47 |
Motif group HL_07583.1
Basepair signature:
|
0.00 | -79.08 | 8 | 7 |
|
| 48 |
Motif group HL_80411.1
Basepair signature:
|
0.00 | -79.21 | 8 | 7 |
tRNA D-loop |
| 49 |
Motif group HL_41902.1
Basepair signature:
|
0.00 | -79.60 | 8 | 8 |
|
| 50 |
Motif group HL_04725.1
Basepair signature:
|
0.00 | -81.16 | 7 | 7 |
|
| 51 |
Motif group HL_01255.1
Basepair signature:
|
0.00 | -83.31 | 8 | 7 |
|
| 52 |
Motif group HL_86109.1
Basepair signature:
|
0.00 | -84.74 | 7 | 6 |
|
| 53 |
Motif group HL_75293.5
Basepair signature:
|
0.00 | -85.22 | 6 | 5 |
|
| 54 |
Motif group HL_93616.2
Basepair signature:
|
0.00 | -88.46 | 7 | 6 |
tRNA D-loop |
| 55 |
Motif group HL_47732.1
Basepair signature:
|
0.00 | -88.52 | 7 | 5 |
|
| 56 |
Motif group HL_90620.1
Basepair signature:
|
0.00 | -91.74 | 9 | 7 |
|
| 57 |
Motif group HL_16991.1
Basepair signature:
|
0.00 | -94.03 | 8 | 7 |
G-quadruplex fragment |
| 58 |
Motif group HL_05304.3
Basepair signature:
|
0.00 | -94.27 | 8 | 6 |
|
| 59 |
Motif group HL_60266.1
Basepair signature:
|
0.00 | -95.20 | 8 | 6 |
|
| 60 |
Motif group HL_23509.1
Basepair signature:
|
0.00 | -95.91 | 8 | 7 |
|
| 61 |
Motif group HL_87463.1
Basepair signature:
|
0.00 | -96.86 | 7 | 6 |
|
| 62 |
Motif group HL_45175.1
Basepair signature:
|
0.00 | -97.53 | 5 | 4 |
tRNA D-loop |
| 63 |
Motif group HL_66853.7
Basepair signature:
|
0.00 | -98.69 | 6 | 5 |
|
| 64 |
Motif group HL_16398.2
Basepair signature:
|
0.00 | -99.42 | 8 | 6 |
|
| 65 |
Motif group HL_93438.2
Basepair signature:
|
0.00 | -100.06 | 5 | 5 |
|
| 66 |
Motif group HL_29129.3
Basepair signature:
|
0.00 | -100.76 | 7 | 7 |
|
| 67 |
Motif group HL_58224.1
Basepair signature:
|
0.00 | -101.22 | 7 | 6 |
|
| 68 |
Motif group HL_81545.2
Basepair signature:
|
0.00 | -102.29 | 7 | 5 |
|
| 69 |
Motif group HL_55436.1
Basepair signature:
|
0.00 | -102.61 | 7 | 5 |
|
| 70 |
Motif group HL_80599.2
Basepair signature:
|
0.00 | -102.89 | 6 | 5 |
|
| 71 |
Motif group HL_32735.2
Basepair signature:
|
0.00 | -103.15 | 5 | 3 |
|
| 72 |
Motif group HL_50851.1
Basepair signature:
|
0.00 | -106.14 | 9 | 8 |
G-quadruplex fragment |
| 73 |
Motif group HL_41464.2
Basepair signature:
|
0.00 | -108.07 | 5 | 4 |
|
| 74 |
Motif group HL_20167.2
Basepair signature:
|
0.00 | -109.85 | 4 | 4 |
|
| 75 |
Motif group HL_20781.1
Basepair signature:
|
0.00 | -110.50 | 7 | 6 |
|
| 76 |
Motif group HL_74055.2
Basepair signature:
|
0.00 | -111.35 | 6 | 6 |
|
| 77 |
Motif group HL_29958.1
Basepair signature:
|
0.00 | -111.59 | 9 | 7 |
|
| 78 |
Motif group HL_98864.1
Basepair signature:
|
0.00 | -115.78 | 7 | 7 |
T-loop with unstacked turn |
| 79 |
Motif group HL_26934.1
Basepair signature:
|
0.00 | -116.46 | 5 | 4 |
|
| 80 |
Motif group HL_78284.1
Basepair signature:
|
0.00 | -116.99 | 6 | 6 |
|
| 81 |
Motif group HL_04641.1
Basepair signature:
|
0.00 | -117.15 | 8 | 7 |
|
| 82 |
Motif group HL_86012.1
Basepair signature:
|
0.00 | -119.61 | 7 | 6 |
T-loop with unstacked turn |
| 83 |
Motif group HL_25061.1
Basepair signature:
|
0.00 | -121.55 | 6 | 6 |
|
| 84 |
Motif group HL_84299.4
Basepair signature:
|
0.00 | -122.69 | 5 | 4 |
|
| 85 |
Motif group HL_81205.3
Basepair signature:
|
0.00 | -125.74 | 9 | 8 |
|
| 86 |
Motif group HL_86769.4
Basepair signature:
|
0.00 | -127.12 | 5 | 4 |
|
| 87 |
Motif group HL_80008.1
Basepair signature:
|
0.00 | -128.89 | 7 | 5 |
|
| 88 |
Motif group HL_64690.6
Basepair signature:
|
0.00 | -129.07 | 5 | 4 |
|
| 89 |
Motif group HL_11542.1
Basepair signature:
|
0.00 | -129.11 | 9 | 8 |
|
| 90 |
Motif group HL_36335.1
Basepair signature:
|
0.00 | -129.90 | 8 | 7 |
|
| 91 |
Motif group HL_15802.1
Basepair signature:
|
0.00 | -130.87 | 7 | 6 |
|
| 92 |
Motif group HL_57863.1
Basepair signature:
|
0.00 | -130.90 | 8 | 7 |
G-quadruplex fragment |
| 93 |
Motif group HL_63355.1
Basepair signature:
|
0.00 | -131.16 | 9 | 8 |
|
| 94 |
Motif group HL_84847.1
Basepair signature:
|
0.00 | -131.94 | 9 | 8 |
|
| 95 |
Motif group HL_98870.1
Basepair signature:
|
0.00 | -132.59 | 8 | 8 |
|
| 96 |
Motif group HL_68572.1
Basepair signature:
|
0.00 | -133.52 | 7 | 7 |
|
| 97 |
Motif group HL_07903.1
Basepair signature:
|
0.00 | -135.52 | 9 | 8 |
|
| 98 |
Motif group HL_20743.5
Basepair signature:
|
0.00 | -135.57 | 6 | 5 |
|
| 99 |
Motif group HL_72628.1
Basepair signature:
|
0.00 | -135.60 | 7 | 5 |
|
| 100 |
Motif group HL_68767.1
Basepair signature:
|
0.00 | -139.24 | 7 | 6 |
tRNA D-loop |
| 101 |
Motif group HL_02581.1
Basepair signature:
|
0.00 | -146.26 | 9 | 8 |
tRNA D-loop |
| 102 |
Motif group HL_18565.1
Basepair signature:
|
0.00 | -146.37 | 8 | 6 |
|
| 103 |
Motif group HL_04171.7
Basepair signature:
|
0.00 | -147.16 | 7 | 6 |
|
| 104 |
Motif group HL_50537.6
Basepair signature:
|
0.00 | -147.73 | 6 | 5 |
tRNA anticodon loop with synthetase |
| 105 |
Motif group HL_20751.2
Basepair signature:
|
0.00 | -147.82 | 10 | 9 |
|
| 106 |
Motif group HL_78347.4
Basepair signature:
|
0.00 | -148.57 | 5 | 5 |
|
| 107 |
Motif group HL_73247.1
Basepair signature:
|
0.00 | -152.36 | 9 | 8 |
Pseudoknot geometry |
| 108 |
Motif group HL_20535.2
Basepair signature:
|
0.00 | -157.59 | 6 | 4 |
|
| 109 |
Motif group HL_77082.1
Basepair signature:
|
0.00 | -160.43 | 5 | 4 |
Pseudoknot geometry |
| 110 |
Motif group HL_61996.2
Basepair signature:
|
0.00 | -163.10 | 7 | 6 |
|
| 111 |
Motif group HL_89346.1
Basepair signature:
|
0.00 | -163.33 | 12 | 11 |
|
| 112 |
Motif group HL_81538.2
Basepair signature:
|
0.00 | -167.93 | 4 | 4 |
GNRA with tandem sheared |
| 113 |
Motif group HL_88364.2
Basepair signature:
|
0.00 | -168.31 | 9 | 8 |
|
| 114 |
Motif group HL_50860.2
Basepair signature:
|
0.00 | -170.63 | 7 | 6 |
|
| 115 |
Motif group HL_28252.8
Basepair signature:
|
0.00 | -179.45 | 5 | 5 |
T-loop with 2 stacked bulged bases |
| 116 |
Motif group HL_93324.4
Basepair signature:
|
0.00 | -181.40 | 5 | 4 |
Pseudoknot geometry |
| 117 |
Motif group HL_77436.5
Basepair signature:
|
0.00 | -184.31 | 5 | 4 |
T-loop related |
| 118 |
Motif group HL_06059.6
Basepair signature:
|
0.00 | -184.42 | 5 | 4 |
tRNA anticodon loop |
| 119 |
Motif group HL_64292.1
Basepair signature:
|
0.00 | -184.87 | 9 | 8 |
|
| 120 |
Motif group HL_28075.1
Basepair signature:
|
0.00 | -186.91 | 6 | 5 |
|
| 121 |
Motif group HL_13971.1
Basepair signature:
|
0.00 | -188.47 | 8 | 8 |
|
| 122 |
Motif group HL_70751.1
Basepair signature:
|
0.00 | -188.77 | 6 | 5 |
|
| 123 |
Motif group HL_13529.1
Basepair signature:
|
0.00 | -188.85 | 5 | 5 |
|
| 124 |
Motif group HL_91641.1
Basepair signature:
|
0.00 | -190.94 | 11 | 10 |
|
| 125 |
Motif group HL_42046.2
Basepair signature:
|
0.00 | -194.91 | 5 | 3 |
|
| 126 |
Motif group HL_73183.1
Basepair signature:
|
0.00 | -198.00 | 9 | 9 |
Pseudoknot geometry with G-bulge |
| 127 |
Motif group HL_89567.2
Basepair signature:
|
0.00 | -198.42 | 6 | 4 |
|
| 128 |
Motif group HL_73266.9
Basepair signature:
|
0.00 | -204.21 | 6 | 5 |
|
| 129 |
Motif group HL_14757.1
Basepair signature:
|
0.00 | -204.41 | 9 | 9 |
|
| 130 |
Motif group HL_87553.1
Basepair signature:
|
0.00 | -206.14 | 6 | 5 |
|
| 131 |
Motif group HL_01609.3
Basepair signature:
|
0.00 | -206.30 | 5 | 5 |
T-loop with 2 bulged bases not stacked |
| 132 |
Motif group HL_48417.5
Basepair signature:
|
0.00 | -207.11 | 4 | 4 |
|
| 133 |
Motif group HL_10453.3
Basepair signature:
|
0.00 | -217.46 | 6 | 5 |
tRNA anticodon loop |
| 134 |
Motif group HL_20811.4
Basepair signature:
|
0.00 | -218.12 | 6 | 5 |
tRNA D-loop |
| 135 |
Motif group HL_10456.1
Basepair signature:
|
0.00 | -222.86 | 12 | 11 |
|
| 136 |
Motif group HL_80922.2
Basepair signature:
|
0.00 | -234.66 | 5 | 5 |
|
| 137 |
Motif group HL_09260.2
Basepair signature:
|
0.00 | -236.74 | 6 | 5 |
tRNA D-loop |
| 138 |
Motif group HL_50779.4
Basepair signature:
|
0.00 | -243.92 | 6 | 5 |
|
| 139 |
Motif group HL_10540.1
Basepair signature:
|
0.00 | -248.42 | 7 | 6 |
|
| 140 |
Motif group HL_51921.1
Basepair signature:
|
0.00 | -249.78 | 12 | 11 |
|
| 141 |
Motif group HL_36684.4
Basepair signature:
|
0.00 | -253.63 | 7 | 6 |
|
| 142 |
Motif group HL_04783.2
Basepair signature:
|
0.00 | -256.35 | 5 | 5 |
|
| 143 |
Motif group HL_66482.1
Basepair signature:
|
0.00 | -264.63 | 12 | 10 |
|
| 144 |
Motif group HL_97733.1
Basepair signature:
|
0.00 | -265.33 | 8 | 7 |
|
| 145 |
Motif group HL_74292.1
Basepair signature:
|
0.00 | -268.63 | 8 | 6 |
|
| 146 |
Motif group HL_24792.1
Basepair signature:
|
0.00 | -270.70 | 8 | 7 |
|
| 147 |
Motif group HL_08510.1
Basepair signature:
|
0.00 | -273.34 | 7 | 5 |
|
| 148 |
Motif group HL_38046.1
Basepair signature:
|
0.00 | -285.24 | 6 | 4 |
|
| 149 |
Motif group HL_04259.3
Basepair signature:
|
0.00 | -289.92 | 6 | 5 |
GNRA with extra cWW |
| 150 |
Motif group HL_99867.1
Basepair signature:
|
0.00 | -298.19 | 6 | 6 |
|
| 151 |
Motif group HL_92488.1
Basepair signature:
|
0.00 | -299.47 | 10 | 10 |
|
| 152 |
Motif group HL_97756.2
Basepair signature:
|
0.00 | -303.22 | 9 | 8 |
|
| 153 |
Motif group HL_33983.1
Basepair signature:
|
0.00 | -305.34 | 7 | 5 |
|
| 154 |
Motif group HL_85367.2
Basepair signature:
|
0.00 | -311.99 | 4 | 4 |
|
| 155 |
Motif group HL_07951.3
Basepair signature:
|
0.00 | -313.74 | 5 | 4 |
tRNA D-loop |
| 156 |
Motif group HL_88205.2
Basepair signature:
|
0.00 | -320.68 | 6 | 5 |
|
| 157 |
Motif group HL_86870.2
Basepair signature:
|
0.00 | -321.73 | 6 | 6 |
|
| 158 |
Motif group HL_80362.1
Basepair signature:
|
0.00 | -334.74 | 7 | 6 |
|
| 159 |
Motif group HL_38808.1
Basepair signature:
|
0.00 | -337.32 | 6 | 5 |
|
| 160 |
Motif group HL_59330.1
Basepair signature:
|
0.00 | -340.75 | 6 | 6 |
|
| 161 |
Motif group HL_80241.1
Basepair signature:
|
0.00 | -343.80 | 5 | 4 |
|
| 162 |
Motif group HL_07886.3
Basepair signature:
|
0.00 | -349.35 | 6 | 6 |
|
| 163 |
Motif group HL_83632.1
Basepair signature:
|
0.00 | -361.18 | 6 | 5 |
tRNA anticodon loop |
| 164 |
Motif group HL_99748.1
Basepair signature:
|
0.00 | -364.10 | 6 | 5 |
Other HL |
| 165 |
Motif group HL_77600.2
Basepair signature:
|
0.00 | -387.51 | 4 | 4 |
|
| 166 |
Motif group HL_93383.1
Basepair signature:
|
0.00 | -390.63 | 8 | 7 |
|
| 167 |
Motif group HL_21372.1
Basepair signature:
|
0.00 | -391.85 | 6 | 5 |
|
| 168 |
Motif group HL_97983.1
Basepair signature:
|
0.00 | -407.03 | 7 | 5 |
|
| 169 |
Motif group HL_27670.2
Basepair signature:
|
0.00 | -423.13 | 5 | 5 |
T-loop with unstacked turn |
| 170 |
Motif group HL_37824.7
Basepair signature:
|
0.00 | -434.85 | 5 | 4 |
GNRA |
| 171 |
Motif group HL_22622.1
Basepair signature:
|
0.00 | -440.07 | 7 | 6 |
|
| 172 |
Motif group HL_78197.1
Basepair signature:
|
0.00 | -446.92 | 4 | 4 |
|
| 173 |
Motif group HL_02817.2
Basepair signature:
|
0.00 | -451.63 | 6 | 4 |
|
| 174 |
Motif group HL_09452.1
Basepair signature:
|
0.00 | -457.69 | 7 | 7 |
|
| 175 |
Motif group HL_25967.2
Basepair signature:
|
0.00 | -463.99 | 6 | 6 |
|
| 176 |
Motif group HL_47854.1
Basepair signature:
|
0.00 | -467.23 | 7 | 6 |
|
| 177 |
Motif group HL_85993.1
Basepair signature:
|
0.00 | -473.61 | 8 | 6 |
|
| 178 |
Motif group HL_00914.1
Basepair signature:
|
0.00 | -474.92 | 7 | 5 |
|
| 179 |
Motif group HL_37369.2
Basepair signature:
|
0.00 | -492.62 | 5 | 5 |
|
| 180 |
Motif group HL_37344.1
Basepair signature:
|
0.00 | -492.88 | 6 | 5 |
|
| 181 |
Motif group HL_51447.1
Basepair signature:
|
0.00 | -493.53 | 6 | 5 |
|
| 182 |
Motif group HL_42998.2
Basepair signature:
|
0.00 | -494.61 | 7 | 5 |
|
| 183 |
Motif group HL_97917.2
Basepair signature:
|
0.00 | -501.84 | 6 | 6 |
|
| 184 |
Motif group HL_89893.1
Basepair signature:
|
0.00 | -506.23 | 8 | 7 |
|
| 185 |
Motif group HL_31585.4
Basepair signature:
|
0.00 | -513.86 | 4 | 4 |
Purine riboswitch |
| 186 |
Motif group HL_50006.2
Basepair signature:
|
0.00 | -514.14 | 6 | 5 |
|
| 187 |
Motif group HL_30680.3
Basepair signature:
|
0.00 | -528.26 | 4 | 4 |
Pseudoknot geometry |
| 188 |
Motif group HL_56131.2
Basepair signature:
|
0.00 | -530.27 | 6 | 5 |
|
| 189 |
Motif group HL_39243.1
Basepair signature:
|
0.00 | -549.79 | 7 | 6 |
|
| 190 |
Motif group HL_13963.3
Basepair signature:
|
0.00 | -556.76 | 7 | 6 |
|
| 191 |
Motif group HL_22584.6
Basepair signature:
|
0.00 | -586.45 | 6 | 5 |
Fab BL3-6 binding hairpin with tSW |
| 192 |
Motif group HL_93535.1
Basepair signature:
|
0.00 | -586.70 | 5 | 5 |
|
| 193 |
Motif group HL_67667.2
Basepair signature:
|
0.00 | -587.11 | 6 | 5 |
|
| 194 |
Motif group HL_38168.1
Basepair signature:
|
0.00 | -588.02 | 6 | 5 |
|
| 195 |
Motif group HL_47787.2
Basepair signature:
|
0.00 | -589.99 | 6 | 5 |
|
| 196 |
Motif group HL_08100.1
Basepair signature:
|
0.00 | -590.60 | 6 | 5 |
|
| 197 |
Motif group HL_66103.1
Basepair signature:
|
0.00 | -598.07 | 7 | 5 |
|
| 198 |
Motif group HL_27483.1
Basepair signature:
|
0.00 | -598.83 | 7 | 5 |
|
| 199 |
Motif group HL_30068.2
Basepair signature:
|
0.00 | -605.46 | 5 | 4 |
|
| 200 |
Motif group HL_15574.1
Basepair signature:
|
0.00 | -606.79 | 7 | 5 |
|
| 201 |
Motif group HL_62934.1
Basepair signature:
|
0.00 | -607.25 | 6 | 5 |
|
| 202 |
Motif group HL_70782.2
Basepair signature:
|
0.00 | -611.66 | 6 | 5 |
|
| 203 |
Motif group HL_50318.1
Basepair signature:
|
0.00 | -617.00 | 7 | 5 |
|
| 204 |
Motif group HL_53890.2
Basepair signature:
|
0.00 | -622.58 | 5 | 5 |
|
| 205 |
Motif group HL_13189.1
Basepair signature:
|
0.00 | -627.95 | 6 | 6 |
|
| 206 |
Motif group HL_49922.4
Basepair signature:
|
0.00 | -632.28 | 5 | 5 |
|
| 207 |
Motif group HL_59843.1
Basepair signature:
|
0.00 | -632.37 | 7 | 6 |
|
| 208 |
Motif group HL_43517.1
Basepair signature:
|
0.00 | -636.51 | 6 | 6 |
|
| 209 |
Motif group HL_87954.2
Basepair signature:
|
0.00 | -640.71 | 6 | 5 |
|
| 210 |
Motif group HL_57875.1
Basepair signature:
|
0.00 | -657.06 | 6 | 5 |
|
| 211 |
Motif group HL_65794.5
Basepair signature:
|
0.00 | -657.13 | 5 | 5 |
Pseudoknot geometry |
| 212 |
Motif group HL_59735.5
Basepair signature:
|
0.00 | -667.89 | 6 | 6 |
|
| 213 |
Motif group HL_82710.2
Basepair signature:
|
0.00 | -676.69 | 6 | 5 |
|
| 214 |
Motif group HL_56676.1
Basepair signature:
|
0.00 | -700.30 | 6 | 5 |
|
| 215 |
Motif group HL_75660.5
Basepair signature:
|
0.00 | -705.07 | 6 | 5 |
|
| 216 |
Motif group HL_71391.1
Basepair signature:
|
0.00 | -709.66 | 6 | 5 |
|
| 217 |
Motif group HL_32392.1
Basepair signature:
|
0.00 | -718.87 | 6 | 6 |
|
| 218 |
Motif group HL_34617.5
Basepair signature:
|
0.00 | -722.65 | 6 | 5 |
UNCG |
| 219 |
Motif group HL_57176.2
Basepair signature:
|
0.00 | -722.89 | 6 | 5 |
Pseudoknot geometry with 3' bulge |
| 220 |
Motif group HL_46501.1
Basepair signature:
|
0.00 | -723.06 | 7 | 6 |
|
| 221 |
Motif group HL_69752.2
Basepair signature:
|
0.00 | -732.16 | 7 | 5 |
|
| 222 |
Motif group HL_48778.2
Basepair signature:
|
0.00 | -733.80 | 5 | 5 |
Mini UNCG |
| 223 |
Motif group HL_38901.2
Basepair signature:
|
0.00 | -737.34 | 7 | 5 |
tRNA D-loop |
| 224 |
Motif group HL_99324.1
Basepair signature:
|
0.00 | -3862.92 | 10 | 9 |
|
| 225 |
Motif group HL_85461.1
Basepair signature:
|
0.00 | -3869.40 | 12 | 10 |
|
| 226 |
Motif group HL_60293.1
Basepair signature:
|
0.00 | -3911.58 | 14 | 13 |
G-quadruplex |
| 227 |
Motif group HL_00317.1
Basepair signature:
|
0.00 | -3912.66 | 14 | 13 |
|
| 228 |
Motif group HL_59564.1
Basepair signature:
|
0.00 | -3924.87 | 14 | 13 |
|
| 229 |
Motif group HL_21400.1
Basepair signature:
|
0.00 | -3931.94 | 16 | 16 |
G-quadruplex |
| 230 |
Motif group HL_12758.3
Basepair signature:
|
0.00 | -3935.73 | 18 | 17 |
G-quadruplex |
| 231 |
Motif group HL_35354.1
Basepair signature:
|
0.00 | -4036.44 | 16 | 15 |
|
| 232 |
Motif group HL_73916.1
Basepair signature:
|
0.00 | -4430.93 | 30 | 29 |
|
| 233 |
Motif group HL_58539.1
Basepair signature:
|
0.00 | -8108.92 | 9 | 9 |
|
| 234 |
Motif group HL_12870.1
Basepair signature:
|
0.00 | -8392.42 | 9 | 8 |
|
| 235 |
Motif group HL_99040.1
Basepair signature:
|
0.00 | -8868.51 | 7 | 7 |
|
| 236 |
Motif group HL_89199.2
Basepair signature:
|
0.00 | -9368.14 | 7 | 6 |
Mini UNCG |
| 237 |
Motif group HL_94980.1
Basepair signature:
|
0.00 | -9999.00 | 8 | 7 |
|
| 238 |
Motif group HL_86883.1
Basepair signature:
|
0.00 | -9999.00 | 5 | 5 |
|
| 239 |
Motif group HL_81100.2
Basepair signature:
|
0.00 | -9999.00 | 8 | 7 |
|
| 240 |
Motif group HL_80709.3
Basepair signature:
|
0.00 | -9999.00 | 7 | 5 |
|
| 241 |
Motif group HL_78677.1
Basepair signature:
|
0.00 | -9999.00 | 7 | 6 |
|
| 242 |
Motif group HL_76094.1
Basepair signature:
|
0.00 | -9999.00 | 8 | 6 |
|
| 243 |
Motif group HL_65313.1
Basepair signature:
|
0.00 | -9999.00 | 7 | 6 |
|
| 244 |
Motif group HL_60914.1
Basepair signature:
|
0.00 | -9999.00 | 8 | 8 |
|
| 245 |
Motif group HL_56334.1
Basepair signature:
|
0.00 | -9999.00 | 5 | 5 |
Mini UNCG |
| 246 |
Motif group HL_55195.3
Basepair signature:
|
0.00 | -9999.00 | 7 | 6 |
|
| 247 |
Motif group HL_52953.3
Basepair signature:
|
0.00 | -9999.00 | 7 | 5 |
|
| 248 |
Motif group HL_35941.1
Basepair signature:
|
0.00 | -9999.00 | 7 | 7 |
|
| 249 |
Motif group HL_32346.4
Basepair signature:
|
0.00 | -9999.00 | 6 | 6 |
|
| 250 |
Motif group HL_29966.1
Basepair signature:
|
0.00 | -9999.00 | 7 | 5 |
|
| 251 |
Motif group HL_28791.1
Basepair signature:
|
0.00 | -9999.00 | 8 | 7 |
|
| 252 |
Motif group HL_26631.1
Basepair signature:
|
0.00 | -9999.00 | 8 | 7 |
|
| 253 |
Motif group HL_22135.1
Basepair signature:
|
0.00 | -9999.00 | 7 | 6 |
|