JAR3D
Query RF02032-CCF-3.98 completed
Run on Motif Atlas Version
using the Rfam secondary structure. Run with the CaCoFold secondary structure.
Rfam family RF02032 maps to these 73 chains: 9L0R|1|A, 9L0R|1|B, 9L0R|1|C, 9L0R|1|D, 9L0R|1|E, 9L0R|1|F, 9L0R|1|G, 9L0R|1|H, 9L0R|1|I, 9L0R|1|J, 9L0R|1|K, 9L0R|1|L, 9LEC|1|J, 9LEE|1|A, 9LEE|1|B, 9LEE|1|C, 9LEE|1|D, 9LEE|1|E, 9LEE|1|F, 9LEE|1|G, 9LEE|1|H, 9LEE|1|I, 9LEE|1|J, 9LEL|1|J, 9LEM|1|A, 9LEM|1|B, 9LEM|1|C, 9LEM|1|D, 9LEM|1|E, 9LEM|1|F, 9LEM|1|G, 9LEM|1|H, 9LEM|1|I, 9LEM|1|J, 9LHK|1|G, 9LHL|1|A, 9LHL|1|B, 9LHL|1|C, 9LHL|1|D, 9LHL|1|E, 9LHL|1|F, 9LHL|1|G, 9LHL|1|H, 9LHL|1|I, 9LHL|1|J, 9LHL|1|K, 9LHL|1|L, 9LHL|1|M, 9LHL|1|N, 9LMF|1|A, 9LMF|1|B, 9LMF|1|C, 9LMF|1|D, 9LMF|1|E, 9LMF|1|F, 9LMF|1|G, 9LMF|1|H, 9LMF|1|I, 9LMF|1|J, 9MEE|1|A, 9MEE|1|B, 9MEE|1|C, 9MEE|1|D, 9MEE|1|E, 9MEE|1|F, 9MEE|1|G, 9MEE|1|H, 9MEE|1|I, 9MEE|1|J, 9MEE|1|K, 9MEE|1|L, 9MEE|1|M, 9MEE|1|N See more about them at RNA 3D Hub by filtering on the chain or the Rfam family.
Loop 9 Hairpin loop
Column numbers: 245-255 - View nucleotides in PDB file(s)
Scored sequences and counts
--GUUGU---- 5
--GAUGU---- 3
--GCCGU---- 3
--UUAGA---- 3
UAGAAAU---A 2
C-GCAA----G 2
C-UUCG----G 2
CACAAGGGGUG 1
CCUGCG---GG 1
UAGAAAU---G 1
UCAAUA---GA 1
C-CUUCG---G 1
--GAAAC--A- 1
C-AUUA----G 1
C-AUUG----G 1
C-CUUA----G 1
C-GUAA----G 1
G-GUAA----C 1
--CUAGG---- 1
--GCAAU---- 1
--GCUGU---- 1
--GUCGU---- 1
Click on headings to reorder table
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group HL_48417.5
Basepair signature:
|
62.86 | -1.81 | 3 | 2 |
|
| 2 |
Motif group HL_53890.2
Basepair signature:
|
45.71 | -1.28 | 3 | 2 |
|
| 3 |
Motif group HL_50006.2
Basepair signature:
|
37.14 | -23.49 | 3 | 3 |
|
| 4 |
Motif group HL_75660.5
Basepair signature:
|
34.29 | -25.78 | 2 | 2 |
|
| 5 |
Motif group HL_57875.1
Basepair signature:
|
34.29 | -39.42 | 3 | 2 |
|
| 6 |
Motif group HL_32392.1
Basepair signature:
|
31.43 | -63.35 | 3 | 3 |
|
| 7 |
Motif group HL_56131.2
Basepair signature:
|
28.57 | -35.33 | 3 | 3 |
|
| 8 |
Motif group HL_81100.2
Basepair signature:
|
28.57 | -342.67 | 3 | 2 |
|
| 9 |
Motif group HL_69752.2
Basepair signature:
|
25.71 | -48.75 | 3 | 3 |
|
| 10 |
Motif group HL_70782.2
Basepair signature:
|
25.71 | -53.51 | 3 | 3 |
|
| 11 |
Motif group HL_04783.2
Basepair signature:
|
22.86 | -44.85 | 3 | 3 |
|
| 12 |
Motif group HL_13189.1
Basepair signature:
|
22.86 | -57.92 | 3 | 3 |
|
| 13 |
Motif group HL_56334.1
Basepair signature:
|
22.86 | -337.58 | 3 | 2 |
Mini UNCG |
| 14 |
Motif group HL_46501.1
Basepair signature:
|
20.00 | -70.72 | 3 | 3 |
|
| 15 |
Motif group HL_93535.1
Basepair signature:
|
20.00 | -85.76 | 3 | 3 |
|
| 16 |
Motif group HL_56676.1
Basepair signature:
|
20.00 | -118.05 | 3 | 3 |
|
| 17 |
Motif group HL_55195.3
Basepair signature:
|
20.00 | -375.07 | 3 | 3 |
|
| 18 |
Motif group HL_52953.3
Basepair signature:
|
20.00 | -5711.40 | 4 | 2 |
|
| 19 |
Motif group HL_37824.7
Basepair signature:
|
17.14 | -108.62 | 2 | 2 |
GNRA |
| 20 |
Motif group HL_13963.3
Basepair signature:
|
14.29 | -46.35 | 4 | 3 |
|
| 21 |
Motif group HL_38901.2
Basepair signature:
|
14.29 | -65.48 | 2 | 2 |
tRNA D-loop |
| 22 |
Motif group HL_37344.1
Basepair signature:
|
14.29 | -72.19 | 4 | 3 |
|
| 23 |
Motif group HL_48778.2
Basepair signature:
|
14.29 | -73.25 | 2 | 2 |
Mini UNCG |
| 24 |
Motif group HL_87553.1
Basepair signature:
|
14.29 | -89.82 | 4 | 3 |
|
| 25 |
Motif group HL_59843.1
Basepair signature:
|
14.29 | -90.45 | 4 | 3 |
|
| 26 |
Motif group HL_62934.1
Basepair signature:
|
14.29 | -95.29 | 4 | 3 |
|
| 27 |
Motif group HL_66103.1
Basepair signature:
|
11.43 | -52.26 | 3 | 2 |
|
| 28 |
Motif group HL_43517.1
Basepair signature:
|
11.43 | -68.27 | 3 | 3 |
|
| 29 |
Motif group HL_78347.4
Basepair signature:
|
11.43 | -71.18 | 3 | 2 |
|
| 30 |
Motif group HL_82710.2
Basepair signature:
|
11.43 | -71.57 | 4 | 3 |
|
| 31 |
Motif group HL_34617.5
Basepair signature:
|
11.43 | -86.98 | 3 | 2 |
UNCG |
| 32 |
Motif group HL_71391.1
Basepair signature:
|
11.43 | -87.89 | 4 | 3 |
|
| 33 |
Motif group HL_50318.1
Basepair signature:
|
11.43 | -102.56 | 4 | 3 |
|
| 34 |
Motif group HL_32346.4
Basepair signature:
|
11.43 | -363.00 | 3 | 2 |
|
| 35 |
Motif group HL_80709.3
Basepair signature:
|
11.43 | -388.05 | 3 | 3 |
|
| 36 |
Motif group HL_59735.5
Basepair signature:
|
11.43 | -3071.43 | 4 | 3 |
|
| 37 |
Motif group HL_65794.5
Basepair signature:
|
11.43 | -5410.98 | 3 | 2 |
Pseudoknot geometry |
| 38 |
Motif group HL_20167.2
Basepair signature:
|
8.57 | -85.54 | 4 | 3 |
|
| 39 |
Motif group HL_77436.5
Basepair signature:
|
8.57 | -115.30 | 3 | 2 |
T-loop related |
| 40 |
Motif group HL_01609.3
Basepair signature:
|
8.57 | -125.78 | 4 | 3 |
T-loop with 2 bulged bases not stacked |
| 41 |
Motif group HL_47787.2
Basepair signature:
|
8.57 | -131.94 | 3 | 2 |
|
| 42 |
Motif group HL_04259.3
Basepair signature:
|
8.57 | -162.65 | 4 | 3 |
GNRA with extra cWW |
| 43 |
Motif group HL_65313.1
Basepair signature:
|
8.57 | -369.81 | 4 | 3 |
|
| 44 |
Motif group HL_35941.1
Basepair signature:
|
8.57 | -372.85 | 3 | 3 |
|
| 45 |
Motif group HL_85993.1
Basepair signature:
|
8.57 | -2387.40 | 6 | 4 |
|
| 46 |
Motif group HL_39243.1
Basepair signature:
|
8.57 | -5448.71 | 5 | 3 |
|
| 47 |
Motif group HL_80922.2
Basepair signature:
|
5.71 | -75.30 | 4 | 3 |
|
| 48 |
Motif group HL_87954.2
Basepair signature:
|
5.71 | -80.46 | 3 | 2 |
|
| 49 |
Motif group HL_57863.1
Basepair signature:
|
5.71 | -85.85 | 6 | 4 |
G-quadruplex fragment |
| 50 |
Motif group HL_50537.6
Basepair signature:
|
5.71 | -95.53 | 5 | 4 |
tRNA anticodon loop with synthetase |
| 51 |
Motif group HL_99748.1
Basepair signature:
|
5.71 | -100.50 | 5 | 4 |
Other HL |
| 52 |
Motif group HL_27670.2
Basepair signature:
|
5.71 | -109.42 | 4 | 3 |
T-loop with unstacked turn |
| 53 |
Motif group HL_77082.1
Basepair signature:
|
5.71 | -154.08 | 4 | 3 |
Pseudoknot geometry |
| 54 |
Motif group HL_29966.1
Basepair signature:
|
5.71 | -377.55 | 5 | 4 |
|
| 55 |
Motif group HL_78677.1
Basepair signature:
|
5.71 | -383.22 | 3 | 3 |
|
| 56 |
Motif group HL_59330.1
Basepair signature:
|
5.71 | -1870.65 | 5 | 4 |
|
| 57 |
Motif group HL_99040.1
Basepair signature:
|
5.71 | -4816.74 | 4 | 4 |
|
| 58 |
Motif group HL_93324.4
Basepair signature:
|
5.71 | -5437.55 | 4 | 3 |
Pseudoknot geometry |
| 59 |
Motif group HL_28791.1
Basepair signature:
|
5.71 | -5744.11 | 4 | 3 |
|
| 60 |
Motif group HL_09452.1
Basepair signature:
|
5.71 | -6832.22 | 4 | 4 |
|
| 61 |
Motif group HL_07886.3
Basepair signature:
|
2.86 | -42.66 | 3 | 3 |
|
| 62 |
Motif group HL_57176.2
Basepair signature:
|
2.86 | -48.28 | 3 | 2 |
Pseudoknot geometry with 3' bulge |
| 63 |
Motif group HL_86870.2
Basepair signature:
|
2.86 | -52.18 | 3 | 3 |
|
| 64 |
Motif group HL_27483.1
Basepair signature:
|
2.86 | -79.99 | 3 | 3 |
|
| 65 |
Motif group HL_08100.1
Basepair signature:
|
2.86 | -82.73 | 4 | 2 |
|
| 66 |
Motif group HL_20743.5
Basepair signature:
|
2.86 | -91.81 | 5 | 4 |
|
| 67 |
Motif group HL_18565.1
Basepair signature:
|
2.86 | -97.17 | 5 | 4 |
|
| 68 |
Motif group HL_49922.4
Basepair signature:
|
2.86 | -107.88 | 3 | 3 |
|
| 69 |
Motif group HL_33983.1
Basepair signature:
|
2.86 | -109.91 | 6 | 4 |
|
| 70 |
Motif group HL_10540.1
Basepair signature:
|
2.86 | -111.17 | 4 | 4 |
|
| 71 |
Motif group HL_02817.2
Basepair signature:
|
2.86 | -134.26 | 5 | 4 |
|
| 72 |
Motif group HL_60914.1
Basepair signature:
|
2.86 | -392.18 | 3 | 3 |
|
| 73 |
Motif group HL_38168.1
Basepair signature:
|
0.00 | -70.06 | 4 | 3 |
|
| 74 |
Motif group HL_20535.2
Basepair signature:
|
0.00 | -82.68 | 4 | 3 |
|
| 75 |
Motif group HL_26934.1
Basepair signature:
|
0.00 | -84.38 | 5 | 4 |
|
| 76 |
Motif group HL_97917.2
Basepair signature:
|
0.00 | -86.04 | 4 | 3 |
|
| 77 |
Motif group HL_15802.1
Basepair signature:
|
0.00 | -86.92 | 5 | 4 |
|
| 78 |
Motif group HL_89893.1
Basepair signature:
|
0.00 | -87.58 | 5 | 4 |
|
| 79 |
Motif group HL_42046.2
Basepair signature:
|
0.00 | -89.57 | 4 | 2 |
|
| 80 |
Motif group HL_66853.7
Basepair signature:
|
0.00 | -91.79 | 5 | 4 |
|
| 81 |
Motif group HL_86012.1
Basepair signature:
|
0.00 | -93.55 | 5 | 5 |
T-loop with unstacked turn |
| 82 |
Motif group HL_20811.4
Basepair signature:
|
0.00 | -95.19 | 4 | 3 |
tRNA D-loop |
| 83 |
Motif group HL_13529.1
Basepair signature:
|
0.00 | -102.93 | 5 | 4 |
|
| 84 |
Motif group HL_25967.2
Basepair signature:
|
0.00 | -103.15 | 4 | 3 |
|
| 85 |
Motif group HL_50860.2
Basepair signature:
|
0.00 | -103.36 | 5 | 4 |
|
| 86 |
Motif group HL_58224.1
Basepair signature:
|
0.00 | -103.63 | 6 | 5 |
|
| 87 |
Motif group HL_83808.4
Basepair signature:
|
0.00 | -104.27 | 6 | 5 |
Pseudoknot |
| 88 |
Motif group HL_98864.1
Basepair signature:
|
0.00 | -107.14 | 6 | 4 |
T-loop with unstacked turn |
| 89 |
Motif group HL_93438.2
Basepair signature:
|
0.00 | -107.29 | 5 | 4 |
|
| 90 |
Motif group HL_04642.1
Basepair signature:
|
0.00 | -107.93 | 6 | 5 |
tRNA D-loop |
| 91 |
Motif group HL_28075.1
Basepair signature:
|
0.00 | -109.62 | 4 | 3 |
|
| 92 |
Motif group HL_37369.2
Basepair signature:
|
0.00 | -110.88 | 4 | 3 |
|
| 93 |
Motif group HL_02887.3
Basepair signature:
|
0.00 | -114.16 | 6 | 6 |
T-loop with 3 stacked bulged bases |
| 94 |
Motif group HL_86769.4
Basepair signature:
|
0.00 | -114.58 | 4 | 4 |
|
| 95 |
Motif group HL_61996.2
Basepair signature:
|
0.00 | -114.69 | 5 | 4 |
|
| 96 |
Motif group HL_22584.6
Basepair signature:
|
0.00 | -115.06 | 4 | 3 |
Fab BL3-6 binding hairpin with tSW |
| 97 |
Motif group HL_18978.1
Basepair signature:
|
0.00 | -115.70 | 6 | 5 |
|
| 98 |
Motif group HL_25061.1
Basepair signature:
|
0.00 | -117.47 | 6 | 4 |
|
| 99 |
Motif group HL_10453.3
Basepair signature:
|
0.00 | -118.08 | 4 | 3 |
tRNA anticodon loop |
| 100 |
Motif group HL_00914.1
Basepair signature:
|
0.00 | -124.58 | 6 | 4 |
|
| 101 |
Motif group HL_87463.1
Basepair signature:
|
0.00 | -125.92 | 6 | 5 |
|
| 102 |
Motif group HL_04641.1
Basepair signature:
|
0.00 | -126.95 | 7 | 5 |
|
| 103 |
Motif group HL_47854.1
Basepair signature:
|
0.00 | -128.20 | 6 | 4 |
|
| 104 |
Motif group HL_89567.2
Basepair signature:
|
0.00 | -128.88 | 5 | 4 |
|
| 105 |
Motif group HL_68257.1
Basepair signature:
|
0.00 | -132.39 | 7 | 5 |
|
| 106 |
Motif group HL_30068.2
Basepair signature:
|
0.00 | -133.80 | 4 | 3 |
|
| 107 |
Motif group HL_73266.9
Basepair signature:
|
0.00 | -134.93 | 5 | 4 |
|
| 108 |
Motif group HL_81545.2
Basepair signature:
|
0.00 | -137.03 | 6 | 5 |
|
| 109 |
Motif group HL_28252.8
Basepair signature:
|
0.00 | -137.47 | 4 | 3 |
T-loop with 2 stacked bulged bases |
| 110 |
Motif group HL_41464.2
Basepair signature:
|
0.00 | -141.64 | 5 | 4 |
|
| 111 |
Motif group HL_89881.5
Basepair signature:
|
0.00 | -144.46 | 7 | 6 |
|
| 112 |
Motif group HL_41543.1
Basepair signature:
|
0.00 | -144.78 | 7 | 6 |
|
| 113 |
Motif group HL_31585.4
Basepair signature:
|
0.00 | -145.31 | 3 | 2 |
Purine riboswitch |
| 114 |
Motif group HL_67079.1
Basepair signature:
|
0.00 | -147.82 | 7 | 5 |
|
| 115 |
Motif group HL_06226.4
Basepair signature:
|
0.00 | -148.12 | 7 | 6 |
|
| 116 |
Motif group HL_64690.6
Basepair signature:
|
0.00 | -149.49 | 5 | 4 |
|
| 117 |
Motif group HL_75293.5
Basepair signature:
|
0.00 | -151.23 | 5 | 4 |
|
| 118 |
Motif group HL_18423.1
Basepair signature:
|
0.00 | -152.14 | 7 | 5 |
|
| 119 |
Motif group HL_04171.7
Basepair signature:
|
0.00 | -152.64 | 6 | 5 |
|
| 120 |
Motif group HL_84299.4
Basepair signature:
|
0.00 | -153.83 | 5 | 3 |
|
| 121 |
Motif group HL_02483.1
Basepair signature:
|
0.00 | -155.69 | 8 | 6 |
|
| 122 |
Motif group HL_36335.1
Basepair signature:
|
0.00 | -156.53 | 7 | 6 |
|
| 123 |
Motif group HL_45175.1
Basepair signature:
|
0.00 | -161.97 | 5 | 4 |
tRNA D-loop |
| 124 |
Motif group HL_23010.1
Basepair signature:
|
0.00 | -162.10 | 7 | 6 |
|
| 125 |
Motif group HL_25847.2
Basepair signature:
|
0.00 | -162.58 | 7 | 6 |
|
| 126 |
Motif group HL_45785.1
Basepair signature:
|
0.00 | -162.65 | 8 | 7 |
|
| 127 |
Motif group HL_98252.1
Basepair signature:
|
0.00 | -163.93 | 8 | 6 |
|
| 128 |
Motif group HL_16991.1
Basepair signature:
|
0.00 | -164.55 | 8 | 6 |
G-quadruplex fragment |
| 129 |
Motif group HL_21372.1
Basepair signature:
|
0.00 | -164.64 | 5 | 4 |
|
| 130 |
Motif group HL_49941.1
Basepair signature:
|
0.00 | -164.98 | 7 | 6 |
tRNA D-loop |
| 131 |
Motif group HL_90620.1
Basepair signature:
|
0.00 | -166.45 | 8 | 6 |
|
| 132 |
Motif group HL_41902.1
Basepair signature:
|
0.00 | -168.61 | 9 | 7 |
|
| 133 |
Motif group HL_74379.3
Basepair signature:
|
0.00 | -171.43 | 8 | 7 |
|
| 134 |
Motif group HL_15574.1
Basepair signature:
|
0.00 | -171.88 | 5 | 4 |
|
| 135 |
Motif group HL_53454.2
Basepair signature:
|
0.00 | -172.71 | 6 | 4 |
|
| 136 |
Motif group HL_81538.2
Basepair signature:
|
0.00 | -174.55 | 4 | 3 |
GNRA with tandem sheared |
| 137 |
Motif group HL_07480.2
Basepair signature:
|
0.00 | -176.60 | 7 | 6 |
|
| 138 |
Motif group HL_23509.1
Basepair signature:
|
0.00 | -178.69 | 9 | 7 |
|
| 139 |
Motif group HL_91939.2
Basepair signature:
|
0.00 | -182.86 | 7 | 6 |
|
| 140 |
Motif group HL_01962.2
Basepair signature:
|
0.00 | -185.07 | 7 | 6 |
|
| 141 |
Motif group HL_60266.1
Basepair signature:
|
0.00 | -185.29 | 8 | 6 |
|
| 142 |
Motif group HL_70658.1
Basepair signature:
|
0.00 | -188.23 | 8 | 7 |
|
| 143 |
Motif group HL_73255.1
Basepair signature:
|
0.00 | -189.73 | 6 | 5 |
|
| 144 |
Motif group HL_06059.6
Basepair signature:
|
0.00 | -192.12 | 4 | 3 |
tRNA anticodon loop |
| 145 |
Motif group HL_86109.1
Basepair signature:
|
0.00 | -194.41 | 9 | 7 |
|
| 146 |
Motif group HL_34964.1
Basepair signature:
|
0.00 | -194.84 | 7 | 5 |
|
| 147 |
Motif group HL_05304.3
Basepair signature:
|
0.00 | -200.74 | 8 | 7 |
|
| 148 |
Motif group HL_53504.3
Basepair signature:
|
0.00 | -201.04 | 7 | 5 |
|
| 149 |
Motif group HL_07583.1
Basepair signature:
|
0.00 | -204.52 | 9 | 7 |
|
| 150 |
Motif group HL_40252.4
Basepair signature:
|
0.00 | -206.05 | 7 | 6 |
|
| 151 |
Motif group HL_08602.1
Basepair signature:
|
0.00 | -207.19 | 9 | 8 |
|
| 152 |
Motif group HL_81205.3
Basepair signature:
|
0.00 | -228.59 | 9 | 9 |
|
| 153 |
Motif group HL_84847.1
Basepair signature:
|
0.00 | -232.51 | 10 | 9 |
|
| 154 |
Motif group HL_68767.1
Basepair signature:
|
0.00 | -239.83 | 9 | 7 |
tRNA D-loop |
| 155 |
Motif group HL_74055.2
Basepair signature:
|
0.00 | -240.27 | 10 | 9 |
|
| 156 |
Motif group HL_02581.1
Basepair signature:
|
0.00 | -264.37 | 10 | 9 |
tRNA D-loop |
| 157 |
Motif group HL_73247.1
Basepair signature:
|
0.00 | -268.69 | 11 | 9 |
Pseudoknot geometry |
| 158 |
Motif group HL_98870.1
Basepair signature:
|
0.00 | -277.70 | 11 | 9 |
|
| 159 |
Motif group HL_91641.1
Basepair signature:
|
0.00 | -293.93 | 12 | 11 |
|
| 160 |
Motif group HL_13971.1
Basepair signature:
|
0.00 | -296.18 | 10 | 8 |
|
| 161 |
Motif group HL_88205.2
Basepair signature:
|
0.00 | -301.60 | 6 | 4 |
|
| 162 |
Motif group HL_14757.1
Basepair signature:
|
0.00 | -302.22 | 13 | 12 |
|
| 163 |
Motif group HL_89199.2
Basepair signature:
|
0.00 | -371.28 | 4 | 3 |
Mini UNCG |
| 164 |
Motif group HL_51921.1
Basepair signature:
|
0.00 | -373.09 | 16 | 14 |
|
| 165 |
Motif group HL_22135.1
Basepair signature:
|
0.00 | -410.63 | 4 | 4 |
|
| 166 |
Motif group HL_86883.1
Basepair signature:
|
0.00 | -417.28 | 4 | 3 |
|
| 167 |
Motif group HL_26631.1
Basepair signature:
|
0.00 | -418.79 | 4 | 3 |
|
| 168 |
Motif group HL_94980.1
Basepair signature:
|
0.00 | -445.23 | 3 | 3 |
|
| 169 |
Motif group HL_92488.1
Basepair signature:
|
0.00 | -458.24 | 11 | 10 |
|
| 170 |
Motif group HL_97756.2
Basepair signature:
|
0.00 | -499.80 | 10 | 9 |
|
| 171 |
Motif group HL_93383.1
Basepair signature:
|
0.00 | -972.79 | 6 | 4 |
|
| 172 |
Motif group HL_80599.2
Basepair signature:
|
0.00 | -1694.45 | 5 | 4 |
|
| 173 |
Motif group HL_12870.1
Basepair signature:
|
0.00 | -1737.02 | 9 | 8 |
|
| 174 |
Motif group HL_32735.2
Basepair signature:
|
0.00 | -1816.67 | 5 | 3 |
|
| 175 |
Motif group HL_76094.1
Basepair signature:
|
0.00 | -1911.69 | 4 | 4 |
|
| 176 |
Motif group HL_51447.1
Basepair signature:
|
0.00 | -2378.96 | 5 | 4 |
|
| 177 |
Motif group HL_93616.2
Basepair signature:
|
0.00 | -2675.93 | 7 | 6 |
tRNA D-loop |
| 178 |
Motif group HL_85434.1
Basepair signature:
|
0.00 | -2774.83 | 7 | 5 |
|
| 179 |
Motif group HL_99769.3
Basepair signature:
|
0.00 | -2829.06 | 7 | 5 |
|
| 180 |
Motif group HL_11542.1
Basepair signature:
|
0.00 | -2978.46 | 9 | 8 |
|
| 181 |
Motif group HL_30680.3
Basepair signature:
|
0.00 | -3081.12 | 4 | 3 |
Pseudoknot geometry |
| 182 |
Motif group HL_29129.3
Basepair signature:
|
0.00 | -3124.42 | 6 | 5 |
|
| 183 |
Motif group HL_97733.1
Basepair signature:
|
0.00 | -3175.05 | 7 | 6 |
|
| 184 |
Motif group HL_08510.1
Basepair signature:
|
0.00 | -3228.34 | 6 | 5 |
|
| 185 |
Motif group HL_77600.2
Basepair signature:
|
0.00 | -3228.34 | 4 | 3 |
|
| 186 |
Motif group HL_38649.1
Basepair signature:
|
0.00 | -3342.70 | 7 | 6 |
|
| 187 |
Motif group HL_33074.4
Basepair signature:
|
0.00 | -3353.74 | 8 | 7 |
U1 small nuclear ribonucleoprotein A binding hairpin |
| 188 |
Motif group HL_10456.1
Basepair signature:
|
0.00 | -3401.30 | 14 | 12 |
|
| 189 |
Motif group HL_66482.1
Basepair signature:
|
0.00 | -3416.92 | 13 | 12 |
|
| 190 |
Motif group HL_89346.1
Basepair signature:
|
0.00 | -3431.39 | 14 | 12 |
|
| 191 |
Motif group HL_55436.1
Basepair signature:
|
0.00 | -3435.02 | 6 | 4 |
|
| 192 |
Motif group HL_38046.1
Basepair signature:
|
0.00 | -3537.63 | 7 | 5 |
|
| 193 |
Motif group HL_85367.2
Basepair signature:
|
0.00 | -3590.35 | 5 | 4 |
|
| 194 |
Motif group HL_83632.1
Basepair signature:
|
0.00 | -3690.80 | 5 | 4 |
tRNA anticodon loop |
| 195 |
Motif group HL_80008.1
Basepair signature:
|
0.00 | -3817.03 | 5 | 5 |
|
| 196 |
Motif group HL_72628.1
Basepair signature:
|
0.00 | -3842.50 | 6 | 4 |
|
| 197 |
Motif group HL_99324.1
Basepair signature:
|
0.00 | -4002.58 | 12 | 11 |
|
| 198 |
Motif group HL_38808.1
Basepair signature:
|
0.00 | -4015.47 | 5 | 4 |
|
| 199 |
Motif group HL_85461.1
Basepair signature:
|
0.00 | -4018.57 | 15 | 14 |
|
| 200 |
Motif group HL_60293.1
Basepair signature:
|
0.00 | -4050.95 | 17 | 16 |
G-quadruplex |
| 201 |
Motif group HL_21400.1
Basepair signature:
|
0.00 | -4054.02 | 19 | 17 |
G-quadruplex |
| 202 |
Motif group HL_35354.1
Basepair signature:
|
0.00 | -4061.61 | 19 | 18 |
|
| 203 |
Motif group HL_00317.1
Basepair signature:
|
0.00 | -4062.12 | 16 | 14 |
|
| 204 |
Motif group HL_20751.2
Basepair signature:
|
0.00 | -4075.31 | 9 | 8 |
|
| 205 |
Motif group HL_12758.3
Basepair signature:
|
0.00 | -4097.13 | 20 | 19 |
G-quadruplex |
| 206 |
Motif group HL_59564.1
Basepair signature:
|
0.00 | -4099.50 | 16 | 14 |
|
| 207 |
Motif group HL_73183.1
Basepair signature:
|
0.00 | -4269.01 | 11 | 9 |
Pseudoknot geometry with G-bulge |
| 208 |
Motif group HL_67407.5
Basepair signature:
|
0.00 | -4279.83 | 7 | 6 |
|
| 209 |
Motif group HL_50851.1
Basepair signature:
|
0.00 | -4306.84 | 8 | 7 |
G-quadruplex fragment |
| 210 |
Motif group HL_23115.1
Basepair signature:
|
0.00 | -4323.88 | 7 | 6 |
tRNA D-loop |
| 211 |
Motif group HL_42998.2
Basepair signature:
|
0.00 | -4362.26 | 5 | 3 |
|
| 212 |
Motif group HL_81312.1
Basepair signature:
|
0.00 | -4487.52 | 8 | 7 |
|
| 213 |
Motif group HL_19210.3
Basepair signature:
|
0.00 | -4499.15 | 6 | 5 |
|
| 214 |
Motif group HL_91503.7
Basepair signature:
|
0.00 | -4515.82 | 7 | 5 |
|
| 215 |
Motif group HL_88558.1
Basepair signature:
|
0.00 | -4538.05 | 8 | 6 |
|
| 216 |
Motif group HL_80411.1
Basepair signature:
|
0.00 | -4543.79 | 7 | 6 |
tRNA D-loop |
| 217 |
Motif group HL_29762.1
Basepair signature:
|
0.00 | -4590.20 | 6 | 5 |
|
| 218 |
Motif group HL_55305.1
Basepair signature:
|
0.00 | -4624.11 | 8 | 6 |
|
| 219 |
Motif group HL_04725.1
Basepair signature:
|
0.00 | -4627.95 | 8 | 6 |
|
| 220 |
Motif group HL_73916.1
Basepair signature:
|
0.00 | -4656.20 | 35 | 33 |
|
| 221 |
Motif group HL_01255.1
Basepair signature:
|
0.00 | -4741.83 | 8 | 7 |
|
| 222 |
Motif group HL_93135.1
Basepair signature:
|
0.00 | -4821.55 | 7 | 6 |
Pseudoknot |
| 223 |
Motif group HL_07903.1
Basepair signature:
|
0.00 | -4822.20 | 10 | 9 |
|
| 224 |
Motif group HL_31581.6
Basepair signature:
|
0.00 | -4838.59 | 8 | 7 |
|
| 225 |
Motif group HL_63355.1
Basepair signature:
|
0.00 | -4881.33 | 9 | 9 |
|
| 226 |
Motif group HL_88364.2
Basepair signature:
|
0.00 | -4888.08 | 11 | 10 |
|
| 227 |
Motif group HL_67667.2
Basepair signature:
|
0.00 | -4914.27 | 4 | 4 |
|
| 228 |
Motif group HL_16398.2
Basepair signature:
|
0.00 | -4941.28 | 9 | 8 |
|
| 229 |
Motif group HL_50779.4
Basepair signature:
|
0.00 | -5013.07 | 6 | 5 |
|
| 230 |
Motif group HL_74292.1
Basepair signature:
|
0.00 | -5045.86 | 7 | 6 |
|
| 231 |
Motif group HL_47732.1
Basepair signature:
|
0.00 | -5118.68 | 8 | 8 |
|
| 232 |
Motif group HL_78197.1
Basepair signature:
|
0.00 | -5176.11 | 5 | 3 |
|
| 233 |
Motif group HL_15118.1
Basepair signature:
|
0.00 | -5176.79 | 8 | 7 |
|
| 234 |
Motif group HL_64292.1
Basepair signature:
|
0.00 | -5201.95 | 11 | 10 |
|
| 235 |
Motif group HL_94376.1
Basepair signature:
|
0.00 | -5252.18 | 8 | 6 |
Pseudoknot geometry |
| 236 |
Motif group HL_69139.1
Basepair signature:
|
0.00 | -5267.74 | 7 | 6 |
|
| 237 |
Motif group HL_29958.1
Basepair signature:
|
0.00 | -5294.89 | 10 | 8 |
|
| 238 |
Motif group HL_70751.1
Basepair signature:
|
0.00 | -5384.45 | 7 | 6 |
|
| 239 |
Motif group HL_35677.3
Basepair signature:
|
0.00 | -5402.36 | 5 | 4 |
|
| 240 |
Motif group HL_36684.4
Basepair signature:
|
0.00 | -5523.91 | 6 | 5 |
|
| 241 |
Motif group HL_78284.1
Basepair signature:
|
0.00 | -5573.83 | 8 | 7 |
|
| 242 |
Motif group HL_99867.1
Basepair signature:
|
0.00 | -5586.84 | 5 | 4 |
|
| 243 |
Motif group HL_50418.1
Basepair signature:
|
0.00 | -5657.17 | 7 | 6 |
|
| 244 |
Motif group HL_24792.1
Basepair signature:
|
0.00 | -5694.33 | 7 | 5 |
|
| 245 |
Motif group HL_80362.1
Basepair signature:
|
0.00 | -5720.42 | 6 | 5 |
|
| 246 |
Motif group HL_68572.1
Basepair signature:
|
0.00 | -5758.02 | 9 | 8 |
|
| 247 |
Motif group HL_20781.1
Basepair signature:
|
0.00 | -6131.05 | 8 | 7 |
|
| 248 |
Motif group HL_22622.1
Basepair signature:
|
0.00 | -6831.78 | 5 | 4 |
|
| 249 |
Motif group HL_97983.1
Basepair signature:
|
0.00 | -7200.84 | 7 | 5 |
|
| 250 |
Motif group HL_80241.1
Basepair signature:
|
0.00 | -7245.51 | 5 | 4 |
|
| 251 |
Motif group HL_58539.1
Basepair signature:
|
0.00 | -7332.41 | 12 | 10 |
|
| 252 |
Motif group HL_09260.2
Basepair signature:
|
0.00 | -9999.00 | 7 | 6 |
tRNA D-loop |
| 253 |
Motif group HL_07951.3
Basepair signature:
|
0.00 | -9999.00 | 6 | 5 |
tRNA D-loop |