JAR3D
Query RF03022-CCF-3.98 completed
Run on Motif Atlas Version
using the Rfam secondary structure. Run with the CaCoFold secondary structure.
Loop 4 Hairpin loop
Column numbers: 14-22 - View nucleotides in PDB file(s)
Scored sequences and counts
C-CACAA-G 34
C-UACG--G 15
C-ACAA--G 5
C-CACG--G 5
C-AAAU--G 3
C-ACAU--G 3
U-CAAG--G 3
U-UACG--A 3
U-UACG--G 3
C-AAGG--G 2
C-CACA--G 2
C-UCCG--G 2
C-UUGU--G 2
U-UAAG--G 2
--GAUG--- 2
--UACG--- 2
CCGCUUCGG 1
-GUUAGGCA 1
CCAGAU-GG 1
CCCACG-GG 1
CUCAAU-GG 1
CUUAAG-AG 1
CUUAAG-GG 1
CUUACG-GG 1
C-CAACC-G 1
C-CACAC-G 1
C-AAGU--G 1
C-ACUU--G 1
C-AGAU--G 1
C-AUAU--G 1
C-CAAG--G 1
C-CCCA--G 1
C-CCCG--G 1
C-UAAG--G 1
C-UAUG--G 1
C-UCGG--G 1
U-UAGG--A 1
--CAAGG-- 1
C--ACA--G 1
--AAGG--- 1
--GUGA--- 1
Click on headings to reorder table
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group HL_53890.2
Basepair signature:
|
82.30 | 13.53 | 2 | 2 |
|
| 2 |
Motif group HL_57176.2
Basepair signature:
|
53.10 | -562.30 | 3 | 2 |
Pseudoknot geometry with 3' bulge |
| 3 |
Motif group HL_93535.1
Basepair signature:
|
44.25 | -11.58 | 3 | 2 |
|
| 4 |
Motif group HL_04783.2
Basepair signature:
|
42.48 | -19.42 | 2 | 2 |
|
| 5 |
Motif group HL_48417.5
Basepair signature:
|
40.71 | -11.48 | 2 | 2 |
|
| 6 |
Motif group HL_50006.2
Basepair signature:
|
38.94 | 2.04 | 2 | 2 |
|
| 7 |
Motif group HL_34617.5
Basepair signature:
|
38.05 | -21.31 | 2 | 2 |
UNCG |
| 8 |
Motif group HL_87954.2
Basepair signature:
|
35.40 | -22.55 | 3 | 2 |
|
| 9 |
Motif group HL_87553.1
Basepair signature:
|
32.74 | -47.35 | 3 | 2 |
|
| 10 |
Motif group HL_31585.4
Basepair signature:
|
31.86 | -642.57 | 3 | 2 |
Purine riboswitch |
| 11 |
Motif group HL_99748.1
Basepair signature:
|
30.97 | -47.21 | 4 | 4 |
Other HL |
| 12 |
Motif group HL_99040.1
Basepair signature:
|
30.97 | -203.73 | 4 | 4 |
|
| 13 |
Motif group HL_10453.3
Basepair signature:
|
30.97 | -543.83 | 4 | 3 |
tRNA anticodon loop |
| 14 |
Motif group HL_04259.3
Basepair signature:
|
30.09 | -87.73 | 3 | 3 |
GNRA with extra cWW |
| 15 |
Motif group HL_37369.2
Basepair signature:
|
30.09 | -485.51 | 3 | 3 |
|
| 16 |
Motif group HL_56676.1
Basepair signature:
|
28.32 | -51.69 | 3 | 3 |
|
| 17 |
Motif group HL_48778.2
Basepair signature:
|
28.32 | -57.89 | 2 | 2 |
Mini UNCG |
| 18 |
Motif group HL_32392.1
Basepair signature:
|
23.89 | -67.86 | 5 | 3 |
|
| 19 |
Motif group HL_75660.5
Basepair signature:
|
21.24 | -31.42 | 2 | 2 |
|
| 20 |
Motif group HL_35941.1
Basepair signature:
|
21.24 | -80.37 | 3 | 3 |
|
| 21 |
Motif group HL_66103.1
Basepair signature:
|
20.35 | -29.84 | 3 | 3 |
|
| 22 |
Motif group HL_43517.1
Basepair signature:
|
20.35 | -69.89 | 4 | 3 |
|
| 23 |
Motif group HL_56131.2
Basepair signature:
|
19.47 | -27.43 | 3 | 3 |
|
| 24 |
Motif group HL_57875.1
Basepair signature:
|
17.70 | -39.77 | 3 | 3 |
|
| 25 |
Motif group HL_38901.2
Basepair signature:
|
16.81 | -64.05 | 4 | 2 |
tRNA D-loop |
| 26 |
Motif group HL_59843.1
Basepair signature:
|
15.04 | -37.58 | 3 | 3 |
|
| 27 |
Motif group HL_65794.5
Basepair signature:
|
15.04 | -203.81 | 3 | 2 |
Pseudoknot geometry |
| 28 |
Motif group HL_52953.3
Basepair signature:
|
14.16 | -235.85 | 3 | 2 |
|
| 29 |
Motif group HL_70782.2
Basepair signature:
|
13.27 | -24.49 | 3 | 3 |
|
| 30 |
Motif group HL_69752.2
Basepair signature:
|
13.27 | -53.76 | 3 | 3 |
|
| 31 |
Motif group HL_82710.2
Basepair signature:
|
11.50 | -35.66 | 4 | 2 |
|
| 32 |
Motif group HL_37824.7
Basepair signature:
|
11.50 | -42.70 | 1 | 1 |
GNRA |
| 33 |
Motif group HL_86870.2
Basepair signature:
|
11.50 | -61.09 | 3 | 3 |
|
| 34 |
Motif group HL_56334.1
Basepair signature:
|
11.50 | -69.01 | 3 | 2 |
Mini UNCG |
| 35 |
Motif group HL_29966.1
Basepair signature:
|
11.50 | -621.95 | 5 | 3 |
|
| 36 |
Motif group HL_81100.2
Basepair signature:
|
11.50 | -721.01 | 4 | 3 |
|
| 37 |
Motif group HL_13189.1
Basepair signature:
|
10.62 | -37.99 | 3 | 3 |
|
| 38 |
Motif group HL_89199.2
Basepair signature:
|
9.73 | -581.35 | 4 | 3 |
Mini UNCG |
| 39 |
Motif group HL_50318.1
Basepair signature:
|
8.85 | -52.38 | 4 | 4 |
|
| 40 |
Motif group HL_07886.3
Basepair signature:
|
8.85 | -63.61 | 4 | 3 |
|
| 41 |
Motif group HL_32346.4
Basepair signature:
|
8.85 | -95.94 | 3 | 2 |
|
| 42 |
Motif group HL_80922.2
Basepair signature:
|
7.96 | -50.49 | 3 | 3 |
|
| 43 |
Motif group HL_38168.1
Basepair signature:
|
7.96 | -50.87 | 2 | 2 |
|
| 44 |
Motif group HL_13963.3
Basepair signature:
|
7.08 | -34.87 | 5 | 3 |
|
| 45 |
Motif group HL_39243.1
Basepair signature:
|
7.08 | -249.96 | 5 | 3 |
|
| 46 |
Motif group HL_20535.2
Basepair signature:
|
5.31 | -62.32 | 5 | 4 |
|
| 47 |
Motif group HL_93324.4
Basepair signature:
|
5.31 | -850.05 | 3 | 3 |
Pseudoknot geometry |
| 48 |
Motif group HL_37344.1
Basepair signature:
|
4.42 | -36.87 | 3 | 3 |
|
| 49 |
Motif group HL_89893.1
Basepair signature:
|
3.54 | -55.11 | 4 | 4 |
|
| 50 |
Motif group HL_46501.1
Basepair signature:
|
3.54 | -72.80 | 3 | 3 |
|
| 51 |
Motif group HL_20811.4
Basepair signature:
|
3.54 | -73.45 | 3 | 3 |
tRNA D-loop |
| 52 |
Motif group HL_22135.1
Basepair signature:
|
3.54 | -83.10 | 4 | 2 |
|
| 53 |
Motif group HL_65313.1
Basepair signature:
|
3.54 | -640.34 | 4 | 4 |
|
| 54 |
Motif group HL_62934.1
Basepair signature:
|
2.65 | -47.68 | 3 | 3 |
|
| 55 |
Motif group HL_22584.6
Basepair signature:
|
2.65 | -59.80 | 3 | 3 |
Fab BL3-6 binding hairpin with tSW |
| 56 |
Motif group HL_49922.4
Basepair signature:
|
2.65 | -76.46 | 3 | 3 |
|
| 57 |
Motif group HL_55195.3
Basepair signature:
|
2.65 | -78.93 | 3 | 2 |
|
| 58 |
Motif group HL_78677.1
Basepair signature:
|
2.65 | -113.35 | 4 | 3 |
|
| 59 |
Motif group HL_18565.1
Basepair signature:
|
1.77 | -66.33 | 5 | 4 |
|
| 60 |
Motif group HL_20167.2
Basepair signature:
|
1.77 | -72.67 | 4 | 4 |
|
| 61 |
Motif group HL_08100.1
Basepair signature:
|
1.77 | -72.94 | 3 | 3 |
|
| 62 |
Motif group HL_64690.6
Basepair signature:
|
1.77 | -91.56 | 4 | 3 |
|
| 63 |
Motif group HL_77436.5
Basepair signature:
|
1.77 | -116.63 | 3 | 2 |
T-loop related |
| 64 |
Motif group HL_60914.1
Basepair signature:
|
1.77 | -121.77 | 4 | 4 |
|
| 65 |
Motif group HL_25061.1
Basepair signature:
|
1.77 | -492.23 | 6 | 5 |
|
| 66 |
Motif group HL_85367.2
Basepair signature:
|
1.77 | -595.05 | 5 | 4 |
|
| 67 |
Motif group HL_78197.1
Basepair signature:
|
1.77 | -840.60 | 5 | 3 |
|
| 68 |
Motif group HL_09452.1
Basepair signature:
|
1.77 | -5234.17 | 5 | 4 |
|
| 69 |
Motif group HL_78347.4
Basepair signature:
|
0.88 | -58.50 | 4 | 3 |
|
| 70 |
Motif group HL_50537.6
Basepair signature:
|
0.88 | -61.27 | 4 | 4 |
tRNA anticodon loop with synthetase |
| 71 |
Motif group HL_20743.5
Basepair signature:
|
0.88 | -88.52 | 5 | 4 |
|
| 72 |
Motif group HL_77082.1
Basepair signature:
|
0.88 | -93.79 | 4 | 3 |
Pseudoknot geometry |
| 73 |
Motif group HL_84299.4
Basepair signature:
|
0.88 | -111.37 | 5 | 4 |
|
| 74 |
Motif group HL_41464.2
Basepair signature:
|
0.88 | -117.48 | 6 | 5 |
|
| 75 |
Motif group HL_81538.2
Basepair signature:
|
0.88 | -145.42 | 4 | 3 |
GNRA with tandem sheared |
| 76 |
Motif group HL_33983.1
Basepair signature:
|
0.88 | -445.53 | 5 | 4 |
|
| 77 |
Motif group HL_02817.2
Basepair signature:
|
0.88 | -535.75 | 4 | 3 |
|
| 78 |
Motif group HL_80709.3
Basepair signature:
|
0.88 | -646.45 | 3 | 2 |
|
| 79 |
Motif group HL_86883.1
Basepair signature:
|
0.88 | -655.37 | 5 | 3 |
|
| 80 |
Motif group HL_26631.1
Basepair signature:
|
0.88 | -699.64 | 3 | 3 |
|
| 81 |
Motif group HL_59330.1
Basepair signature:
|
0.88 | -3754.04 | 5 | 4 |
|
| 82 |
Motif group HL_80362.1
Basepair signature:
|
0.88 | -4358.20 | 4 | 4 |
|
| 83 |
Motif group HL_30680.3
Basepair signature:
|
0.88 | -6221.39 | 4 | 3 |
Pseudoknot geometry |
| 84 |
Motif group HL_97917.2
Basepair signature:
|
0.00 | -49.17 | 4 | 3 |
|
| 85 |
Motif group HL_13529.1
Basepair signature:
|
0.00 | -56.24 | 4 | 3 |
|
| 86 |
Motif group HL_26934.1
Basepair signature:
|
0.00 | -65.87 | 6 | 4 |
|
| 87 |
Motif group HL_86769.4
Basepair signature:
|
0.00 | -66.25 | 4 | 3 |
|
| 88 |
Motif group HL_83808.4
Basepair signature:
|
0.00 | -79.25 | 5 | 5 |
Pseudoknot |
| 89 |
Motif group HL_47854.1
Basepair signature:
|
0.00 | -79.30 | 6 | 4 |
|
| 90 |
Motif group HL_10540.1
Basepair signature:
|
0.00 | -80.29 | 3 | 3 |
|
| 91 |
Motif group HL_89567.2
Basepair signature:
|
0.00 | -80.67 | 4 | 3 |
|
| 92 |
Motif group HL_50860.2
Basepair signature:
|
0.00 | -82.24 | 5 | 4 |
|
| 93 |
Motif group HL_27483.1
Basepair signature:
|
0.00 | -84.12 | 4 | 3 |
|
| 94 |
Motif group HL_86012.1
Basepair signature:
|
0.00 | -86.66 | 7 | 5 |
T-loop with unstacked turn |
| 95 |
Motif group HL_30068.2
Basepair signature:
|
0.00 | -86.97 | 5 | 3 |
|
| 96 |
Motif group HL_98864.1
Basepair signature:
|
0.00 | -88.82 | 6 | 4 |
T-loop with unstacked turn |
| 97 |
Motif group HL_93438.2
Basepair signature:
|
0.00 | -90.63 | 5 | 4 |
|
| 98 |
Motif group HL_71391.1
Basepair signature:
|
0.00 | -91.71 | 5 | 3 |
|
| 99 |
Motif group HL_57863.1
Basepair signature:
|
0.00 | -94.29 | 7 | 5 |
G-quadruplex fragment |
| 100 |
Motif group HL_73266.9
Basepair signature:
|
0.00 | -96.13 | 5 | 4 |
|
| 101 |
Motif group HL_47787.2
Basepair signature:
|
0.00 | -99.28 | 3 | 2 |
|
| 102 |
Motif group HL_61996.2
Basepair signature:
|
0.00 | -102.36 | 6 | 4 |
|
| 103 |
Motif group HL_02887.3
Basepair signature:
|
0.00 | -102.41 | 5 | 5 |
T-loop with 3 stacked bulged bases |
| 104 |
Motif group HL_01609.3
Basepair signature:
|
0.00 | -108.57 | 4 | 3 |
T-loop with 2 bulged bases not stacked |
| 105 |
Motif group HL_28075.1
Basepair signature:
|
0.00 | -110.13 | 4 | 4 |
|
| 106 |
Motif group HL_81545.2
Basepair signature:
|
0.00 | -116.91 | 7 | 5 |
|
| 107 |
Motif group HL_66853.7
Basepair signature:
|
0.00 | -120.02 | 5 | 5 |
|
| 108 |
Motif group HL_04642.1
Basepair signature:
|
0.00 | -124.59 | 6 | 6 |
tRNA D-loop |
| 109 |
Motif group HL_42046.2
Basepair signature:
|
0.00 | -125.03 | 4 | 4 |
|
| 110 |
Motif group HL_68257.1
Basepair signature:
|
0.00 | -130.77 | 7 | 6 |
|
| 111 |
Motif group HL_36335.1
Basepair signature:
|
0.00 | -137.91 | 6 | 5 |
|
| 112 |
Motif group HL_18423.1
Basepair signature:
|
0.00 | -139.60 | 6 | 5 |
|
| 113 |
Motif group HL_41543.1
Basepair signature:
|
0.00 | -139.90 | 8 | 7 |
|
| 114 |
Motif group HL_75293.5
Basepair signature:
|
0.00 | -146.70 | 5 | 5 |
|
| 115 |
Motif group HL_25847.2
Basepair signature:
|
0.00 | -148.13 | 7 | 5 |
|
| 116 |
Motif group HL_28252.8
Basepair signature:
|
0.00 | -148.84 | 5 | 4 |
T-loop with 2 stacked bulged bases |
| 117 |
Motif group HL_04171.7
Basepair signature:
|
0.00 | -149.03 | 7 | 6 |
|
| 118 |
Motif group HL_90620.1
Basepair signature:
|
0.00 | -149.43 | 8 | 6 |
|
| 119 |
Motif group HL_98252.1
Basepair signature:
|
0.00 | -153.43 | 9 | 7 |
|
| 120 |
Motif group HL_67079.1
Basepair signature:
|
0.00 | -155.35 | 6 | 6 |
|
| 121 |
Motif group HL_01962.2
Basepair signature:
|
0.00 | -161.39 | 7 | 6 |
|
| 122 |
Motif group HL_45175.1
Basepair signature:
|
0.00 | -162.72 | 6 | 6 |
tRNA D-loop |
| 123 |
Motif group HL_41902.1
Basepair signature:
|
0.00 | -163.26 | 8 | 7 |
|
| 124 |
Motif group HL_74379.3
Basepair signature:
|
0.00 | -164.03 | 8 | 7 |
|
| 125 |
Motif group HL_16991.1
Basepair signature:
|
0.00 | -171.06 | 9 | 7 |
G-quadruplex fragment |
| 126 |
Motif group HL_23509.1
Basepair signature:
|
0.00 | -173.20 | 9 | 7 |
|
| 127 |
Motif group HL_60266.1
Basepair signature:
|
0.00 | -176.59 | 7 | 6 |
|
| 128 |
Motif group HL_21372.1
Basepair signature:
|
0.00 | -178.80 | 6 | 4 |
|
| 129 |
Motif group HL_70658.1
Basepair signature:
|
0.00 | -185.22 | 9 | 7 |
|
| 130 |
Motif group HL_49941.1
Basepair signature:
|
0.00 | -189.95 | 7 | 7 |
tRNA D-loop |
| 131 |
Motif group HL_53504.3
Basepair signature:
|
0.00 | -197.40 | 7 | 5 |
|
| 132 |
Motif group HL_86109.1
Basepair signature:
|
0.00 | -198.24 | 9 | 8 |
|
| 133 |
Motif group HL_40252.4
Basepair signature:
|
0.00 | -202.99 | 6 | 6 |
|
| 134 |
Motif group HL_07583.1
Basepair signature:
|
0.00 | -211.27 | 9 | 8 |
|
| 135 |
Motif group HL_81205.3
Basepair signature:
|
0.00 | -216.35 | 8 | 8 |
|
| 136 |
Motif group HL_85434.1
Basepair signature:
|
0.00 | -217.12 | 7 | 5 |
|
| 137 |
Motif group HL_84847.1
Basepair signature:
|
0.00 | -223.90 | 10 | 9 |
|
| 138 |
Motif group HL_74055.2
Basepair signature:
|
0.00 | -226.03 | 9 | 9 |
|
| 139 |
Motif group HL_08602.1
Basepair signature:
|
0.00 | -231.76 | 8 | 8 |
|
| 140 |
Motif group HL_68767.1
Basepair signature:
|
0.00 | -240.23 | 9 | 7 |
tRNA D-loop |
| 141 |
Motif group HL_73255.1
Basepair signature:
|
0.00 | -240.78 | 5 | 5 |
|
| 142 |
Motif group HL_73247.1
Basepair signature:
|
0.00 | -252.31 | 9 | 9 |
Pseudoknot geometry |
| 143 |
Motif group HL_93616.2
Basepair signature:
|
0.00 | -257.52 | 6 | 6 |
tRNA D-loop |
| 144 |
Motif group HL_80008.1
Basepair signature:
|
0.00 | -259.72 | 5 | 5 |
|
| 145 |
Motif group HL_72628.1
Basepair signature:
|
0.00 | -259.83 | 5 | 4 |
|
| 146 |
Motif group HL_29129.3
Basepair signature:
|
0.00 | -265.23 | 8 | 7 |
|
| 147 |
Motif group HL_98870.1
Basepair signature:
|
0.00 | -273.37 | 10 | 9 |
|
| 148 |
Motif group HL_13971.1
Basepair signature:
|
0.00 | -283.25 | 10 | 9 |
|
| 149 |
Motif group HL_94980.1
Basepair signature:
|
0.00 | -283.30 | 4 | 4 |
|
| 150 |
Motif group HL_28791.1
Basepair signature:
|
0.00 | -283.77 | 4 | 3 |
|
| 151 |
Motif group HL_14757.1
Basepair signature:
|
0.00 | -290.54 | 12 | 12 |
|
| 152 |
Motif group HL_91641.1
Basepair signature:
|
0.00 | -299.25 | 12 | 11 |
|
| 153 |
Motif group HL_51921.1
Basepair signature:
|
0.00 | -369.25 | 16 | 15 |
|
| 154 |
Motif group HL_88205.2
Basepair signature:
|
0.00 | -377.02 | 5 | 4 |
|
| 155 |
Motif group HL_02483.1
Basepair signature:
|
0.00 | -394.27 | 7 | 6 |
|
| 156 |
Motif group HL_89881.5
Basepair signature:
|
0.00 | -397.16 | 7 | 6 |
|
| 157 |
Motif group HL_15802.1
Basepair signature:
|
0.00 | -401.55 | 6 | 4 |
|
| 158 |
Motif group HL_18978.1
Basepair signature:
|
0.00 | -404.65 | 6 | 6 |
|
| 159 |
Motif group HL_45785.1
Basepair signature:
|
0.00 | -412.84 | 8 | 7 |
|
| 160 |
Motif group HL_87463.1
Basepair signature:
|
0.00 | -415.13 | 8 | 6 |
|
| 161 |
Motif group HL_04641.1
Basepair signature:
|
0.00 | -421.04 | 5 | 5 |
|
| 162 |
Motif group HL_06226.4
Basepair signature:
|
0.00 | -421.40 | 6 | 5 |
|
| 163 |
Motif group HL_58224.1
Basepair signature:
|
0.00 | -421.76 | 6 | 6 |
|
| 164 |
Motif group HL_91939.2
Basepair signature:
|
0.00 | -436.94 | 5 | 5 |
|
| 165 |
Motif group HL_92488.1
Basepair signature:
|
0.00 | -443.11 | 11 | 10 |
|
| 166 |
Motif group HL_97756.2
Basepair signature:
|
0.00 | -448.15 | 10 | 9 |
|
| 167 |
Motif group HL_23010.1
Basepair signature:
|
0.00 | -462.61 | 6 | 6 |
|
| 168 |
Motif group HL_05304.3
Basepair signature:
|
0.00 | -472.36 | 9 | 8 |
|
| 169 |
Motif group HL_07480.2
Basepair signature:
|
0.00 | -494.13 | 8 | 6 |
|
| 170 |
Motif group HL_27670.2
Basepair signature:
|
0.00 | -507.03 | 5 | 3 |
T-loop with unstacked turn |
| 171 |
Motif group HL_02581.1
Basepair signature:
|
0.00 | -518.42 | 10 | 10 |
tRNA D-loop |
| 172 |
Motif group HL_99769.3
Basepair signature:
|
0.00 | -531.56 | 7 | 6 |
|
| 173 |
Motif group HL_25967.2
Basepair signature:
|
0.00 | -538.50 | 5 | 4 |
|
| 174 |
Motif group HL_97733.1
Basepair signature:
|
0.00 | -540.78 | 6 | 5 |
|
| 175 |
Motif group HL_53454.2
Basepair signature:
|
0.00 | -546.61 | 5 | 5 |
|
| 176 |
Motif group HL_00914.1
Basepair signature:
|
0.00 | -563.40 | 5 | 4 |
|
| 177 |
Motif group HL_06059.6
Basepair signature:
|
0.00 | -571.61 | 4 | 3 |
tRNA anticodon loop |
| 178 |
Motif group HL_38046.1
Basepair signature:
|
0.00 | -572.28 | 7 | 5 |
|
| 179 |
Motif group HL_11542.1
Basepair signature:
|
0.00 | -601.97 | 8 | 8 |
|
| 180 |
Motif group HL_83632.1
Basepair signature:
|
0.00 | -602.58 | 5 | 4 |
tRNA anticodon loop |
| 181 |
Motif group HL_34964.1
Basepair signature:
|
0.00 | -614.02 | 8 | 7 |
|
| 182 |
Motif group HL_38808.1
Basepair signature:
|
0.00 | -634.23 | 5 | 4 |
|
| 183 |
Motif group HL_15574.1
Basepair signature:
|
0.00 | -664.90 | 4 | 3 |
|
| 184 |
Motif group HL_67667.2
Basepair signature:
|
0.00 | -796.29 | 5 | 5 |
|
| 185 |
Motif group HL_93383.1
Basepair signature:
|
0.00 | -840.05 | 5 | 4 |
|
| 186 |
Motif group HL_76094.1
Basepair signature:
|
0.00 | -927.40 | 3 | 3 |
|
| 187 |
Motif group HL_12870.1
Basepair signature:
|
0.00 | -1441.33 | 9 | 8 |
|
| 188 |
Motif group HL_08510.1
Basepair signature:
|
0.00 | -2363.31 | 7 | 6 |
|
| 189 |
Motif group HL_38649.1
Basepair signature:
|
0.00 | -2433.48 | 6 | 6 |
|
| 190 |
Motif group HL_55436.1
Basepair signature:
|
0.00 | -2506.08 | 6 | 4 |
|
| 191 |
Motif group HL_10456.1
Basepair signature:
|
0.00 | -2661.05 | 12 | 12 |
|
| 192 |
Motif group HL_66482.1
Basepair signature:
|
0.00 | -2666.15 | 12 | 12 |
|
| 193 |
Motif group HL_42998.2
Basepair signature:
|
0.00 | -3155.44 | 5 | 3 |
|
| 194 |
Motif group HL_20751.2
Basepair signature:
|
0.00 | -3169.78 | 9 | 9 |
|
| 195 |
Motif group HL_23115.1
Basepair signature:
|
0.00 | -3349.13 | 7 | 7 |
tRNA D-loop |
| 196 |
Motif group HL_80599.2
Basepair signature:
|
0.00 | -3374.87 | 3 | 3 |
|
| 197 |
Motif group HL_91503.7
Basepair signature:
|
0.00 | -3481.97 | 7 | 6 |
|
| 198 |
Motif group HL_80411.1
Basepair signature:
|
0.00 | -3508.33 | 6 | 6 |
tRNA D-loop |
| 199 |
Motif group HL_88558.1
Basepair signature:
|
0.00 | -3508.42 | 7 | 7 |
|
| 200 |
Motif group HL_29762.1
Basepair signature:
|
0.00 | -3543.55 | 7 | 6 |
|
| 201 |
Motif group HL_50779.4
Basepair signature:
|
0.00 | -3586.30 | 6 | 4 |
|
| 202 |
Motif group HL_32735.2
Basepair signature:
|
0.00 | -3594.66 | 4 | 4 |
|
| 203 |
Motif group HL_93135.1
Basepair signature:
|
0.00 | -3720.98 | 6 | 6 |
Pseudoknot |
| 204 |
Motif group HL_33074.4
Basepair signature:
|
0.00 | -3739.90 | 7 | 7 |
U1 small nuclear ribonucleoprotein A binding hairpin |
| 205 |
Motif group HL_89346.1
Basepair signature:
|
0.00 | -3822.52 | 13 | 13 |
|
| 206 |
Motif group HL_99324.1
Basepair signature:
|
0.00 | -4008.76 | 11 | 11 |
|
| 207 |
Motif group HL_85461.1
Basepair signature:
|
0.00 | -4017.08 | 15 | 14 |
|
| 208 |
Motif group HL_69139.1
Basepair signature:
|
0.00 | -4056.81 | 7 | 6 |
|
| 209 |
Motif group HL_00317.1
Basepair signature:
|
0.00 | -4062.54 | 16 | 15 |
|
| 210 |
Motif group HL_21400.1
Basepair signature:
|
0.00 | -4063.21 | 20 | 18 |
G-quadruplex |
| 211 |
Motif group HL_60293.1
Basepair signature:
|
0.00 | -4064.61 | 18 | 17 |
G-quadruplex |
| 212 |
Motif group HL_35354.1
Basepair signature:
|
0.00 | -4075.33 | 20 | 19 |
|
| 213 |
Motif group HL_12758.3
Basepair signature:
|
0.00 | -4095.37 | 19 | 19 |
G-quadruplex |
| 214 |
Motif group HL_59564.1
Basepair signature:
|
0.00 | -4100.87 | 16 | 15 |
|
| 215 |
Motif group HL_35677.3
Basepair signature:
|
0.00 | -4169.78 | 5 | 5 |
|
| 216 |
Motif group HL_50851.1
Basepair signature:
|
0.00 | -4410.17 | 9 | 8 |
G-quadruplex fragment |
| 217 |
Motif group HL_73916.1
Basepair signature:
|
0.00 | -4654.79 | 34 | 34 |
|
| 218 |
Motif group HL_04725.1
Basepair signature:
|
0.00 | -4723.02 | 8 | 7 |
|
| 219 |
Motif group HL_73183.1
Basepair signature:
|
0.00 | -4752.52 | 10 | 9 |
Pseudoknot geometry with G-bulge |
| 220 |
Motif group HL_67407.5
Basepair signature:
|
0.00 | -4783.56 | 7 | 5 |
|
| 221 |
Motif group HL_85993.1
Basepair signature:
|
0.00 | -4795.40 | 5 | 4 |
|
| 222 |
Motif group HL_22622.1
Basepair signature:
|
0.00 | -4799.72 | 5 | 4 |
|
| 223 |
Motif group HL_51447.1
Basepair signature:
|
0.00 | -4821.73 | 4 | 4 |
|
| 224 |
Motif group HL_07903.1
Basepair signature:
|
0.00 | -4920.32 | 11 | 9 |
|
| 225 |
Motif group HL_31581.6
Basepair signature:
|
0.00 | -4936.20 | 7 | 7 |
|
| 226 |
Motif group HL_63355.1
Basepair signature:
|
0.00 | -4971.60 | 9 | 8 |
|
| 227 |
Motif group HL_81312.1
Basepair signature:
|
0.00 | -5010.99 | 7 | 7 |
|
| 228 |
Motif group HL_88364.2
Basepair signature:
|
0.00 | -5037.32 | 12 | 11 |
|
| 229 |
Motif group HL_19210.3
Basepair signature:
|
0.00 | -5037.59 | 6 | 6 |
|
| 230 |
Motif group HL_55305.1
Basepair signature:
|
0.00 | -5166.20 | 8 | 7 |
|
| 231 |
Motif group HL_80241.1
Basepair signature:
|
0.00 | -5209.40 | 6 | 4 |
|
| 232 |
Motif group HL_15118.1
Basepair signature:
|
0.00 | -5280.31 | 7 | 7 |
|
| 233 |
Motif group HL_01255.1
Basepair signature:
|
0.00 | -5300.85 | 7 | 7 |
|
| 234 |
Motif group HL_94376.1
Basepair signature:
|
0.00 | -5349.22 | 7 | 6 |
Pseudoknot geometry |
| 235 |
Motif group HL_70751.1
Basepair signature:
|
0.00 | -5481.48 | 5 | 5 |
|
| 236 |
Motif group HL_16398.2
Basepair signature:
|
0.00 | -5523.90 | 9 | 8 |
|
| 237 |
Motif group HL_24792.1
Basepair signature:
|
0.00 | -5533.91 | 7 | 5 |
|
| 238 |
Motif group HL_36684.4
Basepair signature:
|
0.00 | -5633.69 | 6 | 5 |
|
| 239 |
Motif group HL_74292.1
Basepair signature:
|
0.00 | -5689.84 | 6 | 5 |
|
| 240 |
Motif group HL_47732.1
Basepair signature:
|
0.00 | -5701.58 | 7 | 7 |
|
| 241 |
Motif group HL_78284.1
Basepair signature:
|
0.00 | -5728.74 | 7 | 6 |
|
| 242 |
Motif group HL_50418.1
Basepair signature:
|
0.00 | -5763.79 | 6 | 6 |
|
| 243 |
Motif group HL_64292.1
Basepair signature:
|
0.00 | -5784.36 | 11 | 11 |
|
| 244 |
Motif group HL_68572.1
Basepair signature:
|
0.00 | -5916.72 | 8 | 8 |
|
| 245 |
Motif group HL_29958.1
Basepair signature:
|
0.00 | -5938.46 | 11 | 10 |
|
| 246 |
Motif group HL_59735.5
Basepair signature:
|
0.00 | -6241.07 | 3 | 3 |
|
| 247 |
Motif group HL_99867.1
Basepair signature:
|
0.00 | -6321.61 | 6 | 4 |
|
| 248 |
Motif group HL_20781.1
Basepair signature:
|
0.00 | -6850.74 | 6 | 6 |
|
| 249 |
Motif group HL_58539.1
Basepair signature:
|
0.00 | -7848.85 | 12 | 11 |
|
| 250 |
Motif group HL_97983.1
Basepair signature:
|
0.00 | -8034.24 | 8 | 6 |
|
| 251 |
Motif group HL_77600.2
Basepair signature:
|
0.00 | -8987.68 | 5 | 3 |
|
| 252 |
Motif group HL_07951.3
Basepair signature:
|
0.00 | -9999.00 | 5 | 5 |
tRNA D-loop |
| 253 |
Motif group HL_09260.2
Basepair signature:
|
0.00 | -9999.00 | 7 | 7 |
tRNA D-loop |