JAR3D
Query RF03064-CCF-3.98 completed
Run on Motif Atlas Version
using the Rfam secondary structure. Run with the CaCoFold secondary structure.
Rfam family RF03064 maps to one chain: 8IAZ|1|E See more about it at RNA 3D Hub by filtering on the chain or the Rfam family.
Loop 3 Hairpin loop
Column numbers: 20-23 - This loop does not map to nucleotides in a 3D structure with xyz coordinates.
Scored sequences and counts
CAAA 599
AACU 294
AAA- 202
AAAA 69
CAA- 33
AACC 31
GAAC 30
UAAA 20
GACC 13
GAAA 11
AAG- 9
ACAA 7
AAU- 7
CCA- 7
GAUC 6
AA-- 5
AAAC 4
AAAU 4
AAGA 4
AAUU 4
CAGA 4
GUUG 4
AACA 3
CAAC 3
GGAU 3
-AAA 3
AGCU 2
AUCA 2
CCAU 2
CGAA 2
GAAU 2
ACC- 2
CAG- 2
UAA- 2
CA-- 2
AAAG 1
AAUC 1
ACGA 1
AUAA 1
AUCU 1
CAAG 1
CACA 1
CAUA 1
CAUC 1
CCAA 1
UACU 1
AAC- 1
ACA- 1
ACU- 1
AGA- 1
GAA- 1
GGA- 1
UAU- 1
UCA- 1
A--A 1
GA-- 1
GC-- 1
Omitted sequenced and counts
--A- 1
Click on headings to reorder table
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group HL_48778.2
Basepair signature:
|
97.82 | -28.89 | 2 | 0 |
Mini UNCG |
| 2 |
Motif group HL_32346.4
Basepair signature:
|
79.28 | -51.92 | 2 | 1 |
|
| 3 |
Motif group HL_13189.1
Basepair signature:
|
76.18 | -13.97 | 3 | 2 |
|
| 4 |
Motif group HL_78677.1
Basepair signature:
|
72.45 | -62.49 | 4 | 2 |
|
| 5 |
Motif group HL_56131.2
Basepair signature:
|
70.90 | -15.82 | 4 | 2 |
|
| 6 |
Motif group HL_38168.1
Basepair signature:
|
53.14 | -2142.98 | 2 | 1 |
|
| 7 |
Motif group HL_70782.2
Basepair signature:
|
49.26 | -79.54 | 3 | 2 |
|
| 8 |
Motif group HL_27483.1
Basepair signature:
|
29.53 | -40.76 | 4 | 2 |
|
| 9 |
Motif group HL_94980.1
Basepair signature:
|
27.13 | -2038.86 | 4 | 2 |
|
| 10 |
Motif group HL_35941.1
Basepair signature:
|
22.06 | -127.79 | 4 | 3 |
|
| 11 |
Motif group HL_56334.1
Basepair signature:
|
5.85 | -105.67 | 2 | 2 |
Mini UNCG |
| 12 |
Motif group HL_22135.1
Basepair signature:
|
4.58 | -2063.44 | 3 | 2 |
|
| 13 |
Motif group HL_75660.5
Basepair signature:
|
4.58 | -2151.44 | 2 | 1 |
|
| 14 |
Motif group HL_46501.1
Basepair signature:
|
0.14 | -65.69 | 3 | 2 |
|
| 15 |
Motif group HL_48417.5
Basepair signature:
|
0.00 | -75.77 | 3 | 2 |
|
| 16 |
Motif group HL_32392.1
Basepair signature:
|
0.00 | -101.34 | 4 | 3 |
|
| 17 |
Motif group HL_13529.1
Basepair signature:
|
0.00 | -125.28 | 5 | 3 |
|
| 18 |
Motif group HL_37824.7
Basepair signature:
|
0.00 | -138.13 | 2 | 2 |
GNRA |
| 19 |
Motif group HL_50860.2
Basepair signature:
|
0.00 | -151.09 | 5 | 5 |
|
| 20 |
Motif group HL_26934.1
Basepair signature:
|
0.00 | -152.66 | 6 | 5 |
|
| 21 |
Motif group HL_50318.1
Basepair signature:
|
0.00 | -153.22 | 5 | 4 |
|
| 22 |
Motif group HL_04783.2
Basepair signature:
|
0.00 | -156.67 | 3 | 2 |
|
| 23 |
Motif group HL_86870.2
Basepair signature:
|
0.00 | -157.06 | 3 | 1 |
|
| 24 |
Motif group HL_86012.1
Basepair signature:
|
0.00 | -161.10 | 7 | 6 |
T-loop with unstacked turn |
| 25 |
Motif group HL_38901.2
Basepair signature:
|
0.00 | -163.77 | 3 | 2 |
tRNA D-loop |
| 26 |
Motif group HL_62934.1
Basepair signature:
|
0.00 | -165.47 | 3 | 2 |
|
| 27 |
Motif group HL_82710.2
Basepair signature:
|
0.00 | -168.12 | 3 | 2 |
|
| 28 |
Motif group HL_22584.6
Basepair signature:
|
0.00 | -175.92 | 3 | 2 |
Fab BL3-6 binding hairpin with tSW |
| 29 |
Motif group HL_57875.1
Basepair signature:
|
0.00 | -176.23 | 4 | 2 |
|
| 30 |
Motif group HL_20743.5
Basepair signature:
|
0.00 | -176.78 | 5 | 5 |
|
| 31 |
Motif group HL_20811.4
Basepair signature:
|
0.00 | -176.95 | 3 | 2 |
tRNA D-loop |
| 32 |
Motif group HL_20167.2
Basepair signature:
|
0.00 | -180.29 | 5 | 5 |
|
| 33 |
Motif group HL_53890.2
Basepair signature:
|
0.00 | -182.40 | 2 | 2 |
|
| 34 |
Motif group HL_78347.4
Basepair signature:
|
0.00 | -185.45 | 5 | 4 |
|
| 35 |
Motif group HL_93438.2
Basepair signature:
|
0.00 | -187.51 | 6 | 6 |
|
| 36 |
Motif group HL_86769.4
Basepair signature:
|
0.00 | -188.05 | 5 | 4 |
|
| 37 |
Motif group HL_49922.4
Basepair signature:
|
0.00 | -196.00 | 3 | 2 |
|
| 38 |
Motif group HL_81545.2
Basepair signature:
|
0.00 | -198.31 | 6 | 6 |
|
| 39 |
Motif group HL_71391.1
Basepair signature:
|
0.00 | -201.04 | 4 | 2 |
|
| 40 |
Motif group HL_34617.5
Basepair signature:
|
0.00 | -203.85 | 3 | 2 |
UNCG |
| 41 |
Motif group HL_61996.2
Basepair signature:
|
0.00 | -203.90 | 6 | 5 |
|
| 42 |
Motif group HL_13963.3
Basepair signature:
|
0.00 | -207.39 | 4 | 3 |
|
| 43 |
Motif group HL_50006.2
Basepair signature:
|
0.00 | -212.90 | 3 | 2 |
|
| 44 |
Motif group HL_02887.3
Basepair signature:
|
0.00 | -214.22 | 7 | 6 |
T-loop with 3 stacked bulged bases |
| 45 |
Motif group HL_80922.2
Basepair signature:
|
0.00 | -216.79 | 4 | 3 |
|
| 46 |
Motif group HL_41464.2
Basepair signature:
|
0.00 | -225.47 | 6 | 5 |
|
| 47 |
Motif group HL_36335.1
Basepair signature:
|
0.00 | -226.08 | 7 | 6 |
|
| 48 |
Motif group HL_41902.1
Basepair signature:
|
0.00 | -229.11 | 9 | 8 |
|
| 49 |
Motif group HL_04259.3
Basepair signature:
|
0.00 | -231.79 | 4 | 4 |
GNRA with extra cWW |
| 50 |
Motif group HL_41543.1
Basepair signature:
|
0.00 | -232.30 | 9 | 8 |
|
| 51 |
Motif group HL_43517.1
Basepair signature:
|
0.00 | -232.50 | 4 | 3 |
|
| 52 |
Motif group HL_87954.2
Basepair signature:
|
0.00 | -235.09 | 4 | 3 |
|
| 53 |
Motif group HL_07886.3
Basepair signature:
|
0.00 | -236.26 | 4 | 3 |
|
| 54 |
Motif group HL_73266.9
Basepair signature:
|
0.00 | -237.03 | 5 | 5 |
|
| 55 |
Motif group HL_83808.4
Basepair signature:
|
0.00 | -241.94 | 8 | 7 |
Pseudoknot |
| 56 |
Motif group HL_89567.2
Basepair signature:
|
0.00 | -245.24 | 5 | 4 |
|
| 57 |
Motif group HL_67079.1
Basepair signature:
|
0.00 | -245.31 | 7 | 7 |
|
| 58 |
Motif group HL_66103.1
Basepair signature:
|
0.00 | -246.60 | 4 | 3 |
|
| 59 |
Motif group HL_08100.1
Basepair signature:
|
0.00 | -264.38 | 5 | 3 |
|
| 60 |
Motif group HL_04171.7
Basepair signature:
|
0.00 | -265.11 | 8 | 7 |
|
| 61 |
Motif group HL_90620.1
Basepair signature:
|
0.00 | -269.22 | 7 | 7 |
|
| 62 |
Motif group HL_08602.1
Basepair signature:
|
0.00 | -270.18 | 9 | 9 |
|
| 63 |
Motif group HL_74379.3
Basepair signature:
|
0.00 | -274.04 | 8 | 8 |
|
| 64 |
Motif group HL_53504.3
Basepair signature:
|
0.00 | -281.48 | 7 | 6 |
|
| 65 |
Motif group HL_10540.1
Basepair signature:
|
0.00 | -285.59 | 4 | 3 |
|
| 66 |
Motif group HL_01962.2
Basepair signature:
|
0.00 | -286.43 | 7 | 7 |
|
| 67 |
Motif group HL_68767.1
Basepair signature:
|
0.00 | -286.89 | 9 | 9 |
tRNA D-loop |
| 68 |
Motif group HL_25847.2
Basepair signature:
|
0.00 | -291.37 | 7 | 7 |
|
| 69 |
Motif group HL_42046.2
Basepair signature:
|
0.00 | -294.98 | 5 | 4 |
|
| 70 |
Motif group HL_49941.1
Basepair signature:
|
0.00 | -295.25 | 8 | 7 |
tRNA D-loop |
| 71 |
Motif group HL_76094.1
Basepair signature:
|
0.00 | -296.37 | 3 | 1 |
|
| 72 |
Motif group HL_28252.8
Basepair signature:
|
0.00 | -296.96 | 5 | 5 |
T-loop with 2 stacked bulged bases |
| 73 |
Motif group HL_74055.2
Basepair signature:
|
0.00 | -299.31 | 11 | 11 |
|
| 74 |
Motif group HL_07583.1
Basepair signature:
|
0.00 | -300.48 | 10 | 9 |
|
| 75 |
Motif group HL_60266.1
Basepair signature:
|
0.00 | -307.49 | 8 | 7 |
|
| 76 |
Motif group HL_87553.1
Basepair signature:
|
0.00 | -312.28 | 5 | 4 |
|
| 77 |
Motif group HL_86109.1
Basepair signature:
|
0.00 | -313.25 | 10 | 9 |
|
| 78 |
Motif group HL_70658.1
Basepair signature:
|
0.00 | -314.28 | 10 | 9 |
|
| 79 |
Motif group HL_13971.1
Basepair signature:
|
0.00 | -315.23 | 11 | 11 |
|
| 80 |
Motif group HL_88205.2
Basepair signature:
|
0.00 | -316.69 | 6 | 6 |
|
| 81 |
Motif group HL_01609.3
Basepair signature:
|
0.00 | -318.12 | 5 | 4 |
T-loop with 2 bulged bases not stacked |
| 82 |
Motif group HL_18423.1
Basepair signature:
|
0.00 | -318.21 | 7 | 7 |
|
| 83 |
Motif group HL_81205.3
Basepair signature:
|
0.00 | -331.79 | 10 | 10 |
|
| 84 |
Motif group HL_84847.1
Basepair signature:
|
0.00 | -339.62 | 10 | 10 |
|
| 85 |
Motif group HL_28075.1
Basepair signature:
|
0.00 | -341.73 | 5 | 4 |
|
| 86 |
Motif group HL_14757.1
Basepair signature:
|
0.00 | -348.39 | 14 | 14 |
|
| 87 |
Motif group HL_24792.1
Basepair signature:
|
0.00 | -350.29 | 8 | 7 |
|
| 88 |
Motif group HL_40252.4
Basepair signature:
|
0.00 | -355.09 | 7 | 7 |
|
| 89 |
Motif group HL_77436.5
Basepair signature:
|
0.00 | -356.74 | 4 | 3 |
T-loop related |
| 90 |
Motif group HL_73247.1
Basepair signature:
|
0.00 | -386.96 | 11 | 11 |
Pseudoknot geometry |
| 91 |
Motif group HL_98870.1
Basepair signature:
|
0.00 | -397.63 | 11 | 11 |
|
| 92 |
Motif group HL_91641.1
Basepair signature:
|
0.00 | -418.10 | 13 | 13 |
|
| 93 |
Motif group HL_97756.2
Basepair signature:
|
0.00 | -498.56 | 11 | 11 |
|
| 94 |
Motif group HL_92488.1
Basepair signature:
|
0.00 | -575.52 | 13 | 12 |
|
| 95 |
Motif group HL_98864.1
Basepair signature:
|
0.00 | -1167.36 | 7 | 6 |
T-loop with unstacked turn |
| 96 |
Motif group HL_93616.2
Basepair signature:
|
0.00 | -1207.33 | 8 | 7 |
tRNA D-loop |
| 97 |
Motif group HL_23509.1
Basepair signature:
|
0.00 | -1210.70 | 9 | 8 |
|
| 98 |
Motif group HL_68257.1
Basepair signature:
|
0.00 | -1210.70 | 8 | 7 |
|
| 99 |
Motif group HL_85434.1
Basepair signature:
|
0.00 | -1214.27 | 8 | 6 |
|
| 100 |
Motif group HL_16991.1
Basepair signature:
|
0.00 | -1230.58 | 9 | 8 |
G-quadruplex fragment |
| 101 |
Motif group HL_51921.1
Basepair signature:
|
0.00 | -1234.18 | 17 | 17 |
|
| 102 |
Motif group HL_57863.1
Basepair signature:
|
0.00 | -1270.51 | 7 | 5 |
G-quadruplex fragment |
| 103 |
Motif group HL_04642.1
Basepair signature:
|
0.00 | -1292.30 | 7 | 6 |
tRNA D-loop |
| 104 |
Motif group HL_98252.1
Basepair signature:
|
0.00 | -1387.06 | 9 | 7 |
|
| 105 |
Motif group HL_66853.7
Basepair signature:
|
0.00 | -1399.05 | 6 | 5 |
|
| 106 |
Motif group HL_29129.3
Basepair signature:
|
0.00 | -1404.25 | 8 | 7 |
|
| 107 |
Motif group HL_45175.1
Basepair signature:
|
0.00 | -1449.37 | 7 | 5 |
tRNA D-loop |
| 108 |
Motif group HL_18565.1
Basepair signature:
|
0.00 | -1460.64 | 5 | 5 |
|
| 109 |
Motif group HL_73255.1
Basepair signature:
|
0.00 | -1517.26 | 7 | 6 |
|
| 110 |
Motif group HL_75293.5
Basepair signature:
|
0.00 | -1574.07 | 6 | 6 |
|
| 111 |
Motif group HL_84299.4
Basepair signature:
|
0.00 | -1625.34 | 6 | 5 |
|
| 112 |
Motif group HL_72628.1
Basepair signature:
|
0.00 | -1647.47 | 6 | 5 |
|
| 113 |
Motif group HL_80008.1
Basepair signature:
|
0.00 | -1649.75 | 6 | 5 |
|
| 114 |
Motif group HL_99748.1
Basepair signature:
|
0.00 | -1692.49 | 6 | 4 |
Other HL |
| 115 |
Motif group HL_89893.1
Basepair signature:
|
0.00 | -1712.81 | 4 | 3 |
|
| 116 |
Motif group HL_64690.6
Basepair signature:
|
0.00 | -1739.68 | 5 | 5 |
|
| 117 |
Motif group HL_47854.1
Basepair signature:
|
0.00 | -1793.19 | 5 | 4 |
|
| 118 |
Motif group HL_99040.1
Basepair signature:
|
0.00 | -1868.67 | 6 | 4 |
|
| 119 |
Motif group HL_50537.6
Basepair signature:
|
0.00 | -1906.26 | 5 | 4 |
tRNA anticodon loop with synthetase |
| 120 |
Motif group HL_22622.1
Basepair signature:
|
0.00 | -1911.51 | 5 | 4 |
|
| 121 |
Motif group HL_21372.1
Basepair signature:
|
0.00 | -1916.91 | 6 | 5 |
|
| 122 |
Motif group HL_37344.1
Basepair signature:
|
0.00 | -1965.00 | 5 | 4 |
|
| 123 |
Motif group HL_77082.1
Basepair signature:
|
0.00 | -2030.06 | 4 | 4 |
Pseudoknot geometry |
| 124 |
Motif group HL_81538.2
Basepair signature:
|
0.00 | -2107.57 | 4 | 4 |
GNRA with tandem sheared |
| 125 |
Motif group HL_59843.1
Basepair signature:
|
0.00 | -2116.42 | 3 | 2 |
|
| 126 |
Motif group HL_56676.1
Basepair signature:
|
0.00 | -2129.07 | 4 | 2 |
|
| 127 |
Motif group HL_93535.1
Basepair signature:
|
0.00 | -2159.60 | 3 | 2 |
|
| 128 |
Motif group HL_52953.3
Basepair signature:
|
0.00 | -2188.47 | 3 | 2 |
|
| 129 |
Motif group HL_65794.5
Basepair signature:
|
0.00 | -2198.47 | 3 | 2 |
Pseudoknot geometry |
| 130 |
Motif group HL_47787.2
Basepair signature:
|
0.00 | -2198.64 | 3 | 2 |
|
| 131 |
Motif group HL_60914.1
Basepair signature:
|
0.00 | -2204.36 | 4 | 3 |
|
| 132 |
Motif group HL_30068.2
Basepair signature:
|
0.00 | -2210.69 | 4 | 3 |
|
| 133 |
Motif group HL_69752.2
Basepair signature:
|
0.00 | -2214.51 | 4 | 2 |
|
| 134 |
Motif group HL_97917.2
Basepair signature:
|
0.00 | -2217.55 | 5 | 3 |
|
| 135 |
Motif group HL_55195.3
Basepair signature:
|
0.00 | -2218.09 | 3 | 2 |
|
| 136 |
Motif group HL_28791.1
Basepair signature:
|
0.00 | -2256.29 | 5 | 4 |
|
| 137 |
Motif group HL_20535.2
Basepair signature:
|
0.00 | -2264.12 | 5 | 4 |
|
| 138 |
Motif group HL_39243.1
Basepair signature:
|
0.00 | -2287.14 | 4 | 3 |
|
| 139 |
Motif group HL_33074.4
Basepair signature:
|
0.00 | -4033.48 | 9 | 8 |
U1 small nuclear ribonucleoprotein A binding hairpin |
| 140 |
Motif group HL_85461.1
Basepair signature:
|
0.00 | -4060.17 | 16 | 16 |
|
| 141 |
Motif group HL_99324.1
Basepair signature:
|
0.00 | -4060.28 | 13 | 13 |
|
| 142 |
Motif group HL_60293.1
Basepair signature:
|
0.00 | -4076.97 | 19 | 18 |
G-quadruplex |
| 143 |
Motif group HL_21400.1
Basepair signature:
|
0.00 | -4085.26 | 20 | 19 |
G-quadruplex |
| 144 |
Motif group HL_35354.1
Basepair signature:
|
0.00 | -4098.33 | 21 | 20 |
|
| 145 |
Motif group HL_00317.1
Basepair signature:
|
0.00 | -4118.19 | 17 | 16 |
|
| 146 |
Motif group HL_02581.1
Basepair signature:
|
0.00 | -4141.14 | 11 | 11 |
tRNA D-loop |
| 147 |
Motif group HL_12758.3
Basepair signature:
|
0.00 | -4143.64 | 21 | 21 |
G-quadruplex |
| 148 |
Motif group HL_89346.1
Basepair signature:
|
0.00 | -4157.46 | 15 | 15 |
|
| 149 |
Motif group HL_59564.1
Basepair signature:
|
0.00 | -4159.28 | 17 | 16 |
|
| 150 |
Motif group HL_10456.1
Basepair signature:
|
0.00 | -4226.13 | 14 | 14 |
|
| 151 |
Motif group HL_66482.1
Basepair signature:
|
0.00 | -4227.46 | 14 | 14 |
|
| 152 |
Motif group HL_91939.2
Basepair signature:
|
0.00 | -4393.08 | 8 | 7 |
|
| 153 |
Motif group HL_50851.1
Basepair signature:
|
0.00 | -4456.65 | 11 | 9 |
G-quadruplex fragment |
| 154 |
Motif group HL_06226.4
Basepair signature:
|
0.00 | -4462.93 | 7 | 7 |
|
| 155 |
Motif group HL_18978.1
Basepair signature:
|
0.00 | -4468.81 | 8 | 7 |
|
| 156 |
Motif group HL_07480.2
Basepair signature:
|
0.00 | -4535.71 | 8 | 7 |
|
| 157 |
Motif group HL_73916.1
Basepair signature:
|
0.00 | -4729.40 | 36 | 36 |
|
| 158 |
Motif group HL_04725.1
Basepair signature:
|
0.00 | -4783.97 | 10 | 8 |
|
| 159 |
Motif group HL_31581.6
Basepair signature:
|
0.00 | -4998.39 | 9 | 8 |
|
| 160 |
Motif group HL_07903.1
Basepair signature:
|
0.00 | -5027.84 | 12 | 11 |
|
| 161 |
Motif group HL_63355.1
Basepair signature:
|
0.00 | -5078.97 | 10 | 10 |
|
| 162 |
Motif group HL_89881.5
Basepair signature:
|
0.00 | -5084.90 | 9 | 7 |
|
| 163 |
Motif group HL_88364.2
Basepair signature:
|
0.00 | -5098.09 | 13 | 12 |
|
| 164 |
Motif group HL_20751.2
Basepair signature:
|
0.00 | -5104.08 | 10 | 9 |
|
| 165 |
Motif group HL_02483.1
Basepair signature:
|
0.00 | -5133.07 | 8 | 8 |
|
| 166 |
Motif group HL_73183.1
Basepair signature:
|
0.00 | -5153.68 | 11 | 11 |
Pseudoknot geometry with G-bulge |
| 167 |
Motif group HL_67407.5
Basepair signature:
|
0.00 | -5171.94 | 8 | 7 |
|
| 168 |
Motif group HL_15802.1
Basepair signature:
|
0.00 | -5197.32 | 7 | 6 |
|
| 169 |
Motif group HL_45785.1
Basepair signature:
|
0.00 | -5237.07 | 9 | 8 |
|
| 170 |
Motif group HL_05304.3
Basepair signature:
|
0.00 | -5312.19 | 10 | 9 |
|
| 171 |
Motif group HL_50779.4
Basepair signature:
|
0.00 | -5332.91 | 6 | 6 |
|
| 172 |
Motif group HL_15118.1
Basepair signature:
|
0.00 | -5351.22 | 9 | 8 |
|
| 173 |
Motif group HL_23115.1
Basepair signature:
|
0.00 | -5393.76 | 8 | 7 |
tRNA D-loop |
| 174 |
Motif group HL_81312.1
Basepair signature:
|
0.00 | -5403.94 | 8 | 8 |
|
| 175 |
Motif group HL_94376.1
Basepair signature:
|
0.00 | -5421.08 | 8 | 7 |
Pseudoknot geometry |
| 176 |
Motif group HL_19210.3
Basepair signature:
|
0.00 | -5441.39 | 7 | 7 |
|
| 177 |
Motif group HL_99769.3
Basepair signature:
|
0.00 | -5460.64 | 9 | 7 |
|
| 178 |
Motif group HL_70751.1
Basepair signature:
|
0.00 | -5565.53 | 7 | 7 |
|
| 179 |
Motif group HL_55305.1
Basepair signature:
|
0.00 | -5580.03 | 8 | 8 |
|
| 180 |
Motif group HL_34964.1
Basepair signature:
|
0.00 | -5593.17 | 9 | 7 |
|
| 181 |
Motif group HL_87463.1
Basepair signature:
|
0.00 | -5606.99 | 8 | 6 |
|
| 182 |
Motif group HL_11542.1
Basepair signature:
|
0.00 | -5635.81 | 9 | 9 |
|
| 183 |
Motif group HL_91503.7
Basepair signature:
|
0.00 | -5653.88 | 7 | 7 |
|
| 184 |
Motif group HL_80411.1
Basepair signature:
|
0.00 | -5669.66 | 8 | 7 |
tRNA D-loop |
| 185 |
Motif group HL_88558.1
Basepair signature:
|
0.00 | -5686.90 | 8 | 8 |
|
| 186 |
Motif group HL_80599.2
Basepair signature:
|
0.00 | -5718.31 | 6 | 5 |
|
| 187 |
Motif group HL_01255.1
Basepair signature:
|
0.00 | -5727.16 | 8 | 8 |
|
| 188 |
Motif group HL_36684.4
Basepair signature:
|
0.00 | -5732.54 | 7 | 7 |
|
| 189 |
Motif group HL_29762.1
Basepair signature:
|
0.00 | -5751.87 | 8 | 7 |
|
| 190 |
Motif group HL_78284.1
Basepair signature:
|
0.00 | -5763.18 | 8 | 8 |
|
| 191 |
Motif group HL_50418.1
Basepair signature:
|
0.00 | -5850.14 | 7 | 7 |
|
| 192 |
Motif group HL_08510.1
Basepair signature:
|
0.00 | -5901.67 | 8 | 7 |
|
| 193 |
Motif group HL_58224.1
Basepair signature:
|
0.00 | -5905.10 | 7 | 6 |
|
| 194 |
Motif group HL_80362.1
Basepair signature:
|
0.00 | -5911.80 | 6 | 5 |
|
| 195 |
Motif group HL_93383.1
Basepair signature:
|
0.00 | -5926.80 | 6 | 5 |
|
| 196 |
Motif group HL_68572.1
Basepair signature:
|
0.00 | -5963.70 | 10 | 10 |
|
| 197 |
Motif group HL_23010.1
Basepair signature:
|
0.00 | -5981.95 | 7 | 7 |
|
| 198 |
Motif group HL_16398.2
Basepair signature:
|
0.00 | -5999.44 | 10 | 9 |
|
| 199 |
Motif group HL_93135.1
Basepair signature:
|
0.00 | -6029.59 | 8 | 7 |
Pseudoknot |
| 200 |
Motif group HL_38649.1
Basepair signature:
|
0.00 | -6072.64 | 8 | 8 |
|
| 201 |
Motif group HL_32735.2
Basepair signature:
|
0.00 | -6073.83 | 5 | 5 |
|
| 202 |
Motif group HL_74292.1
Basepair signature:
|
0.00 | -6093.18 | 6 | 6 |
|
| 203 |
Motif group HL_97733.1
Basepair signature:
|
0.00 | -6112.09 | 8 | 7 |
|
| 204 |
Motif group HL_47732.1
Basepair signature:
|
0.00 | -6152.76 | 8 | 8 |
|
| 205 |
Motif group HL_04641.1
Basepair signature:
|
0.00 | -6162.39 | 6 | 6 |
|
| 206 |
Motif group HL_37369.2
Basepair signature:
|
0.00 | -6186.76 | 5 | 3 |
|
| 207 |
Motif group HL_64292.1
Basepair signature:
|
0.00 | -6303.63 | 13 | 13 |
|
| 208 |
Motif group HL_55436.1
Basepair signature:
|
0.00 | -6316.77 | 6 | 6 |
|
| 209 |
Motif group HL_59330.1
Basepair signature:
|
0.00 | -6336.42 | 7 | 6 |
|
| 210 |
Motif group HL_29958.1
Basepair signature:
|
0.00 | -6420.59 | 11 | 10 |
|
| 211 |
Motif group HL_69139.1
Basepair signature:
|
0.00 | -6583.97 | 8 | 7 |
|
| 212 |
Motif group HL_25967.2
Basepair signature:
|
0.00 | -6629.69 | 6 | 4 |
|
| 213 |
Motif group HL_35677.3
Basepair signature:
|
0.00 | -6770.18 | 7 | 6 |
|
| 214 |
Motif group HL_99867.1
Basepair signature:
|
0.00 | -6775.57 | 7 | 6 |
|
| 215 |
Motif group HL_38046.1
Basepair signature:
|
0.00 | -6793.65 | 6 | 5 |
|
| 216 |
Motif group HL_53454.2
Basepair signature:
|
0.00 | -6883.98 | 6 | 6 |
|
| 217 |
Motif group HL_85367.2
Basepair signature:
|
0.00 | -6885.36 | 5 | 4 |
|
| 218 |
Motif group HL_33983.1
Basepair signature:
|
0.00 | -6910.64 | 6 | 5 |
|
| 219 |
Motif group HL_09452.1
Basepair signature:
|
0.00 | -7099.06 | 6 | 5 |
|
| 220 |
Motif group HL_83632.1
Basepair signature:
|
0.00 | -7123.55 | 5 | 5 |
tRNA anticodon loop |
| 221 |
Motif group HL_25061.1
Basepair signature:
|
0.00 | -7314.93 | 7 | 5 |
|
| 222 |
Motif group HL_20781.1
Basepair signature:
|
0.00 | -7390.90 | 8 | 7 |
|
| 223 |
Motif group HL_89199.2
Basepair signature:
|
0.00 | -7511.78 | 4 | 3 |
Mini UNCG |
| 224 |
Motif group HL_06059.6
Basepair signature:
|
0.00 | -7686.83 | 5 | 5 |
tRNA anticodon loop |
| 225 |
Motif group HL_80241.1
Basepair signature:
|
0.00 | -7719.17 | 6 | 5 |
|
| 226 |
Motif group HL_38808.1
Basepair signature:
|
0.00 | -7760.40 | 6 | 5 |
|
| 227 |
Motif group HL_42998.2
Basepair signature:
|
0.00 | -7952.42 | 5 | 4 |
|
| 228 |
Motif group HL_27670.2
Basepair signature:
|
0.00 | -8002.01 | 6 | 4 |
T-loop with unstacked turn |
| 229 |
Motif group HL_85993.1
Basepair signature:
|
0.00 | -8081.67 | 5 | 4 |
|
| 230 |
Motif group HL_51447.1
Basepair signature:
|
0.00 | -8111.57 | 5 | 4 |
|
| 231 |
Motif group HL_80709.3
Basepair signature:
|
0.00 | -8465.29 | 2 | 1 |
|
| 232 |
Motif group HL_26631.1
Basepair signature:
|
0.00 | -8484.06 | 3 | 2 |
|
| 233 |
Motif group HL_57176.2
Basepair signature:
|
0.00 | -8487.95 | 3 | 2 |
Pseudoknot geometry with 3' bulge |
| 234 |
Motif group HL_29966.1
Basepair signature:
|
0.00 | -8496.30 | 4 | 2 |
|
| 235 |
Motif group HL_02817.2
Basepair signature:
|
0.00 | -8507.28 | 4 | 4 |
|
| 236 |
Motif group HL_86883.1
Basepair signature:
|
0.00 | -8550.63 | 5 | 3 |
|
| 237 |
Motif group HL_65313.1
Basepair signature:
|
0.00 | -8552.34 | 5 | 4 |
|
| 238 |
Motif group HL_58539.1
Basepair signature:
|
0.00 | -8600.86 | 13 | 12 |
|
| 239 |
Motif group HL_12870.1
Basepair signature:
|
0.00 | -8630.56 | 10 | 9 |
|
| 240 |
Motif group HL_97983.1
Basepair signature:
|
0.00 | -8652.67 | 7 | 6 |
|
| 241 |
Motif group HL_00914.1
Basepair signature:
|
0.00 | -8933.84 | 5 | 4 |
|
| 242 |
Motif group HL_10453.3
Basepair signature:
|
0.00 | -9023.77 | 4 | 3 |
tRNA anticodon loop |
| 243 |
Motif group HL_67667.2
Basepair signature:
|
0.00 | -9537.23 | 6 | 5 |
|
| 244 |
Motif group HL_77600.2
Basepair signature:
|
0.00 | -9967.38 | 6 | 5 |
|
| 245 |
Motif group HL_78197.1
Basepair signature:
|
0.00 | -9996.15 | 5 | 4 |
|
| 246 |
Motif group HL_07951.3
Basepair signature:
|
0.00 | -9999.00 | 6 | 5 |
tRNA D-loop |
| 247 |
Motif group HL_09260.2
Basepair signature:
|
0.00 | -9999.00 | 8 | 7 |
tRNA D-loop |
| 248 |
Motif group HL_15574.1
Basepair signature:
|
0.00 | -9999.00 | 4 | 3 |
|
| 249 |
Motif group HL_30680.3
Basepair signature:
|
0.00 | -9999.00 | 5 | 4 |
Pseudoknot geometry |
| 250 |
Motif group HL_31585.4
Basepair signature:
|
0.00 | -9999.00 | 4 | 4 |
Purine riboswitch |
| 251 |
Motif group HL_59735.5
Basepair signature:
|
0.00 | -9999.00 | 4 | 3 |
|
| 252 |
Motif group HL_81100.2
Basepair signature:
|
0.00 | -9999.00 | 5 | 4 |
|
| 253 |
Motif group HL_93324.4
Basepair signature:
|
0.00 | -9999.00 | 4 | 4 |
Pseudoknot geometry |