RNA 3D Hub

JAR3D Query RF03072-3.98 completed
Run on Motif Atlas Version using the Rfam secondary structure. Run with the CaCoFold secondary structure.

Rfam family RF03072 maps to these 6 chains: 9CXF|1|A, 9E73|1|A, 9E74|1|A, 9E75|1|A, 9ELY|1|A, 9G7C|1|A See more about them at RNA 3D Hub by filtering on the chain or the Rfam family.

Loop 5 Hairpin loop

Column numbers: 151-282 - View nucleotides in PDB file(s) 
    Scored sequences and counts

    
    C-----------------------------CAAAGC------------------------------------------------------------------------------------------------   33

    
    CGCG--------------------------UGCG-----------------------------------------------------------------------------------------------CGC   21

    
    CGUG--------------------------UGCG-----------------------------------------------------------------------------------------------CAC   17

    
    A-----------------------------CAAAGU------------------------------------------------------------------------------------------------   17

    
    CC----------------------------AAA--------------------------------------------------------------------------------------------------G   15

    
    UC----------------------------AAAAG------------------------------------------------------------------------------------------------G   11

    
    UU----------------------------AAAA-------------------------------------------------------------------------------------------------G    9

    
    UAUA--------------------------AAA------------------------------------------------------------------------------------------------UAU    8

    
    AUA---------------------------AAAA------------------------------------------------------------------------------------------------UA    8

    
    AC----------------------------AAAAU------------------------------------------------------------------------------------------------G    7

    
    G-----------------------------CAAAGU------------------------------------------------------------------------------------------------    7

    
    A-----------------------------AAAAU-------------------------------------------------------------------------------------------------    7

    
    UCC---------------------------UAAAAAUU--------------------------------------------------------------------------------------------GG    6

    
    AA----------------------------AAUU-------------------------------------------------------------------------------------------------U    6

    
    G-----------------------------AAAAU-------------------------------------------------------------------------------------------------    6

    
    UGCG--------------------------UGCG-----------------------------------------------------------------------------------------------CGC    5

    
    GAG---------------------------AAGAG-----------------------------------------------------------------------------------------------CU    5

    
    UA----------------------------AAAA-------------------------------------------------------------------------------------------------U    5

    
    ------------------------------CAAAGU------------------------------------------------------------------------------------------------    5

    
    CG----------------------------AAG--------------------------------------------------------------------------------------------------C    5

    
    CACUA-------------------------AAAAU---------------------------------------------------------------------------------------------UGG-    4

    
    UCCG--------------------------CAAGG----------------------------------------------------------------------------------------------CGG    4

    
    GCGG--------------------------UCU------------------------------------------------------------------------------------------------CCG    4

    
    AC----------------------------UUCUC------------------------------------------------------------------------------------------------G    4

    
    AU----------------------------AAAAU------------------------------------------------------------------------------------------------G    4

    
    AUA---------------------------AAA-------------------------------------------------------------------------------------------------UA    4

    
    GA----------------------------AAAAU------------------------------------------------------------------------------------------------U    4

    
    C-----------------------------UAAGA-------------------------------------------------------------------------------------------------    4

    
    CC----------------------------AAG--------------------------------------------------------------------------------------------------G    4

    
    UC----------------------------AAA--------------------------------------------------------------------------------------------------G    4

    
    CAAUGUA-----------------------AAGA--------------------------------------------------------------------------------------------UGCA--    3

    
    CGCG--------------------------CAGGAGAU-------------------------------------------------------------------------------------------CG-    3

    
    AACGC-------------------------AGG-----------------------------------------------------------------------------------------------GCGG    3

    
    UGUG--------------------------UGUG-----------------------------------------------------------------------------------------------CAU    3

    
    -ACG--------------------------UGAG-----------------------------------------------------------------------------------------------CGU    3

    
    UGCG--------------------------GAGA-----------------------------------------------------------------------------------------------CG-    3

    
    AAA---------------------------UAGA------------------------------------------------------------------------------------------------UU    3

    
    AA----------------------------AAAAU------------------------------------------------------------------------------------------------U    3

    
    AC----------------------------UUUUC------------------------------------------------------------------------------------------------G    3

    
    GG----------------------------AAAA-------------------------------------------------------------------------------------------------C    3

    
    AC----------------------------AAA--------------------------------------------------------------------------------------------------G    3

    
    C-----------------------------UAAAG-------------------------------------------------------------------------------------------------    3

    
    ------------------------------GAGAA-------------------------------------------------------------------------------------------------    3

    
    C-----------------------------UUUG--------------------------------------------------------------------------------------------------    3

    
    ACCG--------------------------CAAGG----------------------------------------------------------------------------------------------CGG    2

    
    UGGGC-------------------------AUU-----------------------------------------------------------------------------------------------GCCC    2

    
    CGCG--------------------------UGUG-----------------------------------------------------------------------------------------------CGC    2

    
    CGUG--------------------------UGCG-----------------------------------------------------------------------------------------------CAU    2

    
    CGUG--------------------------UGGG-----------------------------------------------------------------------------------------------CAU    2

    
    CGUG--------------------------UGUG-----------------------------------------------------------------------------------------------CAC    2

    
    UA----------------------------UAAAAAUU---------------------------------------------------------------------------------------------U    2

    
    UAUG--------------------------UGCG-----------------------------------------------------------------------------------------------CAU    2

    
    UGUG--------------------------UGCG-----------------------------------------------------------------------------------------------CAC    2

    
    A-C---------------------------AAAAAC----------------------------------------------------------------------------------------------GA    2

    
    A-CA--------------------------AAAA-----------------------------------------------------------------------------------------------UGA    2

    
    CGU---------------------------UUCG------------------------------------------------------------------------------------------------GC    2

    
    ------------------------------ACAAAGAG----------------------------------------------------------------------------------------------    2

    
    AA----------------------------AAAGU------------------------------------------------------------------------------------------------U    2

    
    AC----------------------------UCUUC------------------------------------------------------------------------------------------------G    2

    
    G-C---------------------------AAAA------------------------------------------------------------------------------------------------GU    2

    
    A-----------------------------CAAAGC------------------------------------------------------------------------------------------------    2

    
    G-----------------------------AAAAGC------------------------------------------------------------------------------------------------    2

    
    GG----------------------------AAAU-------------------------------------------------------------------------------------------------U    2

    
    U-----------------------------CAAAGU------------------------------------------------------------------------------------------------    2

    
    UU----------------------------AAAG-------------------------------------------------------------------------------------------------G    2

    
    UU----------------------------UAGA-------------------------------------------------------------------------------------------------A    2

    
    ------------------------------AGUAUU------------------------------------------------------------------------------------------------    2

    
    A-----------------------------AAAUU-------------------------------------------------------------------------------------------------    2

    
    AC----------------------------UUU--------------------------------------------------------------------------------------------------G    2

    
    C-----------------------------AAAAU-------------------------------------------------------------------------------------------------    2

    
    C-----------------------------UAAGC-------------------------------------------------------------------------------------------------    2

    
    C-----------------------------UUCUC-------------------------------------------------------------------------------------------------    2

    
    G-----------------------------GAAUU-------------------------------------------------------------------------------------------------    2

    
    GA----------------------------AAA--------------------------------------------------------------------------------------------------U    2

    
    GG----------------------------AAU--------------------------------------------------------------------------------------------------C    2

    
    G-----------------------------AAAC--------------------------------------------------------------------------------------------------    2

    
    CGCACUCCGG--------------------UCCGCUUAGCACGGAGUCCGAGAGUGGCAGAGCUCCGUAAAUUCGGAGUUCGCUAUUCGACCACAUGC-------------------------UCGGA---A    1

    
    CA----------------------------UGUCCUCAAGCCGCCUCGGAGGACGAAGGAGUGGCAGGGCCUCCAGGUCCGCUAUUCGACCACAUGCCUUU------------------------------U    1

    
    GUGAU-CGCUCGCGUGUUAUUCCUGCUAGCCUUGC------------------------------------------------------------------GCUUUUGCAGGUUUGGCGAA-GAGCUCAUCA    1

    
    UGGUGGUGG----GAGCCCC----------UGUUG------------------------------------------------------------------------------GGGGCGCUAUACCACAGCC    1

    
    CCG---------------------------AACAAAAACACCCCUGA-----------------------------------------------------------------------------------CG    1

    
    CGGCGCA-----------------------UAUUAAU-----------------------------------------------------------------------------------------UGU-CC    1

    
    CGGCGCA-----------------------UAUUGAU-----------------------------------------------------------------------------------------UGC-CC    1

    
    CGGUACAA----------------------AUUAA------------------------------------------------------------------------------------------UUGU-CU    1

    
    CGCC--------------------------GCCCUAAUAUA----------------------------------------------------------------------------------------GGC    1

    
    ------------------------------AACCAAAAAAGCAAAUA-------------------------------------------------------------------------------------    1

    
    AAACC-C-----------------------AAGA--------------------------------------------------------------------------------------------GCGGUU    1

    
    AAUGCGC-----------------------AAGAC-------------------------------------------------------------------------------------------GCGC--    1

    
    ACAGGC------------------------GAAAAU-------------------------------------------------------------------------------------------GCC--    1

    
    ACCCG-------------------------AGAUG---------------------------------------------------------------------------------------------CGGG    1

    
    CACG--------------------------CAGGAGUU-------------------------------------------------------------------------------------------CG-    1

    
    CGCGG-------------------------CGCGU---------------------------------------------------------------------------------------------CCGC    1

    
    UCCG--------------------------CGGAGUU--------------------------------------------------------------------------------------------CGG    1

    
    ------------------------------CGAAGAAGAGUAA-----------------------------------------------------------------------------------------    1

    
    CAA---------------------------CAAAUUGU--------------------------------------------------------------------------------------------UU    1

    
    CACUA-------------------------AAAA----------------------------------------------------------------------------------------------UGGG    1

    
    CACUA-------------------------AAAAC---------------------------------------------------------------------------------------------UGG-    1

    
    CCGGC-------------------------GAAA----------------------------------------------------------------------------------------------GCCG    1

    
    CGCC--------------------------AAAAGC---------------------------------------------------------------------------------------------GGA    1

    
    CU----------------------------GCAAGGAACA-------------------------------------------------------------------------------------------G    1

    
    UCCU--------------------------AAAAGC---------------------------------------------------------------------------------------------GGG    1

    
    UCCUA-------------------------AAAA----------------------------------------------------------------------------------------------UGGG    1

    
    UUCUA-------------------------AAAA----------------------------------------------------------------------------------------------UGGA    1

    
    ------------------------------CAAAAAAAUGAA------------------------------------------------------------------------------------------    1

    
    -ACC--------------------------AAAAAC---------------------------------------------------------------------------------------------GGU    1

    
    -ACCA-------------------------AAAA----------------------------------------------------------------------------------------------UGGU    1

    
    A-----------------------------GAAGAAGAGUA-------------------------------------------------------------------------------------------    1

    
    C-----------------------------GAAGAGCAGUA-------------------------------------------------------------------------------------------    1

    
    CAG---------------------------CAAAGAU---------------------------------------------------------------------------------------------CU    1

    
    GAGC--------------------------AAGAG----------------------------------------------------------------------------------------------GCA    1

    
    U-----------------------------GAAGAAGAGUA-------------------------------------------------------------------------------------------    1

    
    AAGCG-------------------------UAU-----------------------------------------------------------------------------------------------CGC-    1

    
    ACU---------------------------AAAAUC----------------------------------------------------------------------------------------------GG    1

    
    CACC--------------------------GCAA-----------------------------------------------------------------------------------------------GGU    1

    
    CAGC--------------------------AGGAA----------------------------------------------------------------------------------------------GC-    1

    
    CGAG--------------------------GCAA-----------------------------------------------------------------------------------------------CUC    1

    
    GAGC--------------------------AAGAG----------------------------------------------------------------------------------------------GC-    1

    
    GAGC--------------------------AGGAA----------------------------------------------------------------------------------------------GC-    1

    
    GCGG--------------------------UUCG-----------------------------------------------------------------------------------------------CCG    1

    
    GGCA--------------------------UGCG-----------------------------------------------------------------------------------------------UGC    1

    
    GGCG--------------------------UGCG-----------------------------------------------------------------------------------------------CGU    1

    
    GGGG--------------------------UGCG-----------------------------------------------------------------------------------------------CCC    1

    
    GGUG--------------------------UGCG-----------------------------------------------------------------------------------------------CAC    1

    
    GUGG--------------------------GCAA-----------------------------------------------------------------------------------------------CCG    1

    
    U-----------------------------AAAAAAUACA--------------------------------------------------------------------------------------------    1

    
    UCU---------------------------AAAAGC----------------------------------------------------------------------------------------------GG    1

    
    UUC---------------------------AAUAGA----------------------------------------------------------------------------------------------GA    1

    
    ------------------------------UCCAAAGCGU--------------------------------------------------------------------------------------------    1

    
    -CGC--------------------------GUGC-----------------------------------------------------------------------------------------------GCG    1

    
    ACG---------------------------CAAGG-----------------------------------------------------------------------------------------------CG    1

    
    ACG---------------------------CGAGG-----------------------------------------------------------------------------------------------CG    1

    
    CGC---------------------------AGAGC-----------------------------------------------------------------------------------------------GU    1

    
    CGC---------------------------GGGGU-----------------------------------------------------------------------------------------------GC    1

    
    GAG---------------------------AAGAA-----------------------------------------------------------------------------------------------CU    1

    
    GAGC--------------------------AAG------------------------------------------------------------------------------------------------GCU    1

    
    GC----------------------------CGGAGAU----------------------------------------------------------------------------------------------G    1

    
    GCGG--------------------------UUU------------------------------------------------------------------------------------------------CCG    1

    
    GGG---------------------------CUUGU-----------------------------------------------------------------------------------------------CC    1

    
    UAG---------------------------AAGAG-----------------------------------------------------------------------------------------------CU    1

    
    UC----------------------------UUUCAGC----------------------------------------------------------------------------------------------G    1

    
    UGCG--------------------------GGGA-----------------------------------------------------------------------------------------------CG-    1

    
    C-GC--------------------------AAA------------------------------------------------------------------------------------------------GCU    1

    
    CA----------------------------GUAUAG-----------------------------------------------------------------------------------------------U    1

    
    CCG---------------------------UUCG------------------------------------------------------------------------------------------------CG    1

    
    CG----------------------------CAAAGC-----------------------------------------------------------------------------------------------C    1

    
    CGA---------------------------UUUU------------------------------------------------------------------------------------------------UC    1

    
    CGG---------------------------UUCU------------------------------------------------------------------------------------------------CC    1

    
    CGG---------------------------UUUU------------------------------------------------------------------------------------------------CC    1

    
    GGG---------------------------AAAU------------------------------------------------------------------------------------------------UC    1

    
    U-----------------------------GCGGAGAU----------------------------------------------------------------------------------------------    1

    
    UC----------------------------AAAAAG-----------------------------------------------------------------------------------------------G    1

    
    ------------------------------CAAAAAUA----------------------------------------------------------------------------------------------    1

    
    AC----------------------------ACACC------------------------------------------------------------------------------------------------G    1

    
    AC----------------------------UCCUC------------------------------------------------------------------------------------------------G    1

    
    AC----------------------------UCUUG------------------------------------------------------------------------------------------------G    1

    
    AC----------------------------UCUUU------------------------------------------------------------------------------------------------G    1

    
    AC----------------------------UUCUU------------------------------------------------------------------------------------------------G    1

    
    CCG---------------------------AUA-------------------------------------------------------------------------------------------------CG    1

    
    CU----------------------------AAAAU------------------------------------------------------------------------------------------------G    1

    
    G-C---------------------------AAAA------------------------------------------------------------------------------------------------GA    1

    
    GAG---------------------------AAU-------------------------------------------------------------------------------------------------UU    1

    
    GC----------------------------AAAAU------------------------------------------------------------------------------------------------G    1

    
    UC----------------------------AAAAA------------------------------------------------------------------------------------------------G    1

    
    UC----------------------------AAAAU------------------------------------------------------------------------------------------------G    1

    
    A-----------------------------CAAAGA------------------------------------------------------------------------------------------------    1

    
    A-----------------------------UAAAGU------------------------------------------------------------------------------------------------    1

    
    AA----------------------------AAAU-------------------------------------------------------------------------------------------------U    1

    
    AC----------------------------AAAG-------------------------------------------------------------------------------------------------G    1

    
    C-----------------------------CAAAGA------------------------------------------------------------------------------------------------    1

    
    C-----------------------------CAAAGU------------------------------------------------------------------------------------------------    1

    
    C-----------------------------CUAAUC------------------------------------------------------------------------------------------------    1

    
    C-----------------------------GAAAUA------------------------------------------------------------------------------------------------    1

    
    CA----------------------------AAAA-------------------------------------------------------------------------------------------------U    1

    
    CA----------------------------AAAG-------------------------------------------------------------------------------------------------U    1

    
    CU----------------------------CAUC-------------------------------------------------------------------------------------------------A    1

    
    G-----------------------------CAAAGC------------------------------------------------------------------------------------------------    1

    
    G-----------------------------CAAGGC------------------------------------------------------------------------------------------------    1

    
    G-----------------------------CAAUGU------------------------------------------------------------------------------------------------    1

    
    G-----------------------------CUAUGU------------------------------------------------------------------------------------------------    1

    
    G-----------------------------UUCACC------------------------------------------------------------------------------------------------    1

    
    GA----------------------------CAGG-------------------------------------------------------------------------------------------------U    1

    
    GG----------------------------AAAU-------------------------------------------------------------------------------------------------C    1

    
    GU----------------------------UAAA-------------------------------------------------------------------------------------------------G    1

    
    U-----------------------------CAAAGC------------------------------------------------------------------------------------------------    1

    
    UA----------------------------AAAU-------------------------------------------------------------------------------------------------U    1

    
    ------------------------------CAAAGC------------------------------------------------------------------------------------------------    1

    
    -C----------------------------AAAG-------------------------------------------------------------------------------------------------G    1

    
    -C----------------------------CAAG-------------------------------------------------------------------------------------------------G    1

    
    A-----------------------------AAUAU-------------------------------------------------------------------------------------------------    1

    
    C-----------------------------AAAAA-------------------------------------------------------------------------------------------------    1

    
    C-----------------------------CAAAU-------------------------------------------------------------------------------------------------    1

    
    C-----------------------------CAAGA-------------------------------------------------------------------------------------------------    1

    
    C-----------------------------CUCGC-------------------------------------------------------------------------------------------------    1

    
    C-----------------------------GAAAU-------------------------------------------------------------------------------------------------    1

    
    C-----------------------------UAUGG-------------------------------------------------------------------------------------------------    1

    
    C-----------------------------UCGUG-------------------------------------------------------------------------------------------------    1

    
    CC----------------------------CUU--------------------------------------------------------------------------------------------------G    1

    
    CC----------------------------UUU--------------------------------------------------------------------------------------------------G    1

    
    G-----------------------------AAAGU-------------------------------------------------------------------------------------------------    1

    
    G-----------------------------AAGAU-------------------------------------------------------------------------------------------------    1

    
    G-----------------------------GCAAU-------------------------------------------------------------------------------------------------    1

    
    UC----------------------------AAG--------------------------------------------------------------------------------------------------G    1

    
    UC----------------------------AGA--------------------------------------------------------------------------------------------------G    1

    
    UC----------------------------AUU--------------------------------------------------------------------------------------------------G    1

    
    ------------------------------AAAUU-------------------------------------------------------------------------------------------------    1

    
    ------------------------------CAUGA-------------------------------------------------------------------------------------------------    1

    
    ------------------------------GAAAA-------------------------------------------------------------------------------------------------    1

    
    A-----------------------------AAAA--------------------------------------------------------------------------------------------------    1

    
    A-----------------------------UAAG--------------------------------------------------------------------------------------------------    1

    
    C-----------------------------CUUA--------------------------------------------------------------------------------------------------    1

    
    G-----------------------------UCCG--------------------------------------------------------------------------------------------------    1

    
    U-----------------------------ACAA--------------------------------------------------------------------------------------------------    1

    
    U-----------------------------UAAC--------------------------------------------------------------------------------------------------    1

    
    ------------------------------GAGA--------------------------------------------------------------------------------------------------    1

    
    ------------------------------UUUA--------------------------------------------------------------------------------------------------    1
Click on headings to reorder table
# Matching motif group Acceptance Rate Mean Cutoff Score Full Edit Distance Interior Edit Distance Basepair Diagram and most common annotation
1

Motif group HL_53890.2

Basepair signature:
cWW-F-F-F

26.02 -380.39 3 2

2

Motif group HL_87954.2

Basepair signature:
cWW-tSW-F

25.00 -434.97 3 2

3

Motif group HL_57176.2

Basepair signature:
cWW-F-F-F

22.34 -1529.30 3 2

Pseudoknot geometry with 3' bulge

4

Motif group HL_39243.1

Basepair signature:
cWW-F-F-F-F

19.26 -994.00 4 3

5

Motif group HL_87553.1

Basepair signature:
cWW-F-F-F-F-F

17.83 -227.27 4 3

6

Motif group HL_04783.2

Basepair signature:
cWW-F-F-F

16.80 -327.73 3 3

7

Motif group HL_13529.1

Basepair signature:
cWW-F-F-F-F

16.60 -215.23 4 3

8

Motif group HL_59843.1

Basepair signature:
cWW-F-F-F-F

15.98 -453.36 4 3

9

Motif group HL_50006.2

Basepair signature:
cWW-F-F

15.16 -402.41 4 3

10

Motif group HL_82710.2

Basepair signature:
cWW-F-F-F

13.73 -703.27 5 3

11

Motif group HL_93535.1

Basepair signature:
cWW-F-F-F-F

12.50 -414.58 4 3

12

Motif group HL_75660.5

Basepair signature:
cWW-F

12.50 -1524.01 3 3

13

Motif group HL_52953.3

Basepair signature:
cWW-F-F-F-F

12.50 -3484.81 4 3

14

Motif group HL_37824.7

Basepair signature:
cWW-F-F-F-F

12.30 -360.20 2 2

GNRA

15

Motif group HL_59735.5

Basepair signature:
cWW-F-F-F-F-F

11.27 -3524.42 4 3

16

Motif group HL_38901.2

Basepair signature:
cWW-F-cSH

10.86 -1156.70 4 3

tRNA D-loop

17

Motif group HL_67407.5

Basepair signature:
cWW-F-F-F-F-F-F-F-F

10.86 -2518.54 7 6

18

Motif group HL_49922.4

Basepair signature:
cWW-F-F-F

10.45 -421.45 3 3

19

Motif group HL_80922.2

Basepair signature:
cWW-tSH-F

10.04 -352.85 4 4

20

Motif group HL_57875.1

Basepair signature:
cWW-F-F

10.04 -695.20 4 3

21

Motif group HL_69752.2

Basepair signature:
cWW-F

10.04 -1521.34 4 3

22

Motif group HL_65794.5

Basepair signature:
cWW-F-F-F-F

8.81 -1468.43 4 3

Pseudoknot geometry

23

Motif group HL_48417.5

Basepair signature:
cWW-F-F

8.40 -259.98 3 3

24

Motif group HL_15574.1

Basepair signature:
cWW-F-F-F-F-F

7.99 -580.32 4 3

25

Motif group HL_38168.1

Basepair signature:
cWW-F

6.76 -1503.40 4 3

26

Motif group HL_10540.1

Basepair signature:
cWW-F-F-F-F-F

6.15 -251.13 5 4

27

Motif group HL_53454.2

Basepair signature:
cWW-tSH-F-F-F-F-F

5.94 -235.48 6 5

28

Motif group HL_02817.2

Basepair signature:
cWW-F-F-F-F

5.74 -463.70 4 3

29

Motif group HL_70782.2

Basepair signature:
cWW-F

5.74 -1525.48 5 4

30

Motif group HL_29966.1

Basepair signature:
cWW-F-F-F

5.74 -3177.10 5 4

31

Motif group HL_07886.3

Basepair signature:
cWW-F-F-F

5.33 -363.21 4 3

32

Motif group HL_18978.1

Basepair signature:
cWW-F-F-tHW-F-F-F

5.12 -189.85 7 6

33

Motif group HL_04259.3

Basepair signature:
cWW-F-F-F-F-F-F

5.12 -299.83 4 3

GNRA with extra cWW

34

Motif group HL_94376.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F-F

5.12 -3297.12 8 6

Pseudoknot geometry

35

Motif group HL_20535.2

Basepair signature:
cWW-F-F-F-F

4.71 -296.34 5 4

36

Motif group HL_62934.1

Basepair signature:
cWW-tSH-F

4.71 -480.36 4 4

37

Motif group HL_56334.1

Basepair signature:
cWW-F

4.71 -3150.77 4 4

Mini UNCG

38

Motif group HL_27670.2

Basepair signature:
cWW-tWH-F-F

4.51 -360.87 5 3

T-loop with unstacked turn

39

Motif group HL_97917.2

Basepair signature:
cWW-F-F-F-F

4.51 -369.04 5 4

40

Motif group HL_47854.1

Basepair signature:
cWW-F-F-F-F

4.10 -403.86 5 3

41

Motif group HL_56131.2

Basepair signature:
cWW-F-F

3.89 -390.26 5 4

42

Motif group HL_30068.2

Basepair signature:
cWW-F-F-F-F

3.89 -426.54 4 3

43

Motif group HL_77436.5

Basepair signature:
cWW-F-F-F-F-F

3.69 -247.40 4 3

T-loop related

44

Motif group HL_10453.3

Basepair signature:
cWW-F-F-F-F-F

3.48 -349.91 4 3

tRNA anticodon loop

45

Motif group HL_50318.1

Basepair signature:
cWW-cSH-F-F

3.48 -686.15 5 4

46

Motif group HL_86870.2

Basepair signature:
cWW-F-F-F

3.28 -391.68 4 4

47

Motif group HL_31585.4

Basepair signature:
cWW-F-F-F-F-F

3.07 -440.31 4 3

Purine riboswitch

48

Motif group HL_93324.4

Basepair signature:
cWW-F-F-F-F-F-F

2.87 -762.65 4 3

Pseudoknot geometry

49

Motif group HL_50860.2

Basepair signature:
cWW-F-cWH-F-F-F-F

2.46 -154.82 5 4

50

Motif group HL_38808.1

Basepair signature:
cWW-cWW

2.46 -576.33 5 4

51

Motif group HL_55195.3

Basepair signature:
cWW-F

2.25 -3159.28 4 4

52

Motif group HL_34617.5

Basepair signature:
cWW-tSW-F

2.05 -529.66 4 3

UNCG

53

Motif group HL_46501.1

Basepair signature:
cWW-cWS

2.05 -1164.75 4 4

54

Motif group HL_22584.6

Basepair signature:
cWW-tSW-F

1.84 -438.27 4 3

Fab BL3-6 binding hairpin with tSW

55

Motif group HL_48778.2

Basepair signature:
cWW-F

1.84 -1591.97 4 4

Mini UNCG

56

Motif group HL_65313.1

Basepair signature:
cWW-F-F-F

1.84 -3200.87 6 5

57

Motif group HL_81100.2

Basepair signature:
cWW

1.84 -4519.38 5 4

58

Motif group HL_81545.2

Basepair signature:
cWW-tWH-F-F-F-F

1.64 -172.17 5 4

59

Motif group HL_36335.1

Basepair signature:
cWW-F-F-cSS-cSS-F

1.64 -188.01 5 5

60

Motif group HL_04171.7

Basepair signature:
cWW-cWW-F-F-F-F-F-F

1.64 -215.81 7 5

61

Motif group HL_66103.1

Basepair signature:
cWW-F-F

1.64 -690.63 5 4

62

Motif group HL_32346.4

Basepair signature:
cWW-F

1.64 -3167.55 4 4

63

Motif group HL_55436.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F

1.43 -1876.84 6 5

64

Motif group HL_86769.4

Basepair signature:
cWW-cWW-cSH-F

1.23 -214.99 5 4

65

Motif group HL_78347.4

Basepair signature:
cWW-F-F-F-F

1.23 -260.92 5 4

66

Motif group HL_80709.3

Basepair signature:
cWW-F-F-F

1.23 -3198.65 4 3

67

Motif group HL_13189.1

Basepair signature:
cWW-F-F

1.02 -719.96 5 4

68

Motif group HL_57863.1

Basepair signature:
cWW-F-F-cWH-cWH-F

0.82 -161.49 6 5

G-quadruplex fragment

69

Motif group HL_61996.2

Basepair signature:
cWW-tWH-F-F-F

0.82 -162.54 5 4

70

Motif group HL_20743.5

Basepair signature:
cWW-cWW-F-F-F-F

0.82 -186.73 5 4

71

Motif group HL_89567.2

Basepair signature:
cWW-F-F-F

0.82 -318.85 5 4

72

Motif group HL_89893.1

Basepair signature:
cWW-F-F-F-F

0.82 -525.50 5 4

73

Motif group HL_85993.1

Basepair signature:
cWW-F-F-F-F-F

0.82 -2396.82 6 5

74

Motif group HL_35941.1

Basepair signature:
cWW-F

0.82 -4056.68 6 5

75

Motif group HL_02887.3

Basepair signature:
cWW-tWH-F-F-F-F-F-F

0.61 -145.63 6 5

T-loop with 3 stacked bulged bases

76

Motif group HL_06226.4

Basepair signature:
cWW-F-F-F-F-F-F-F

0.61 -176.46 6 5

77

Motif group HL_66853.7

Basepair signature:
cWW-cWS-F-cSH

0.61 -180.93 6 5

78

Motif group HL_41464.2

Basepair signature:
cWW-F-F-F-F-F

0.61 -218.44 5 4

79

Motif group HL_04641.1

Basepair signature:
cWW-F-F-F-F-F

0.61 -230.19 6 5

80

Motif group HL_37344.1

Basepair signature:
cWW-F-F

0.61 -363.50 5 4

81

Motif group HL_13963.3

Basepair signature:
cWW-F-F

0.61 -385.32 5 4

82

Motif group HL_00914.1

Basepair signature:
cWW-F-F-F-F

0.61 -495.31 5 4

83

Motif group HL_38046.1

Basepair signature:
cWW-F-F-F-F-F-F

0.61 -543.35 6 5

84

Motif group HL_56676.1

Basepair signature:
cWW-F-F

0.61 -615.41 4 4

85

Motif group HL_43517.1

Basepair signature:
cWW-F-F-F

0.61 -736.30 5 5

86

Motif group HL_32392.1

Basepair signature:
cWW-F-F

0.61 -1193.21 6 5

87

Motif group HL_80362.1

Basepair signature:
cWW-F-F-F

0.61 -2058.43 6 5

88

Motif group HL_80241.1

Basepair signature:
cWW-F-F-F-F-F-F-F

0.61 -3190.32 6 4

89

Motif group HL_86883.1

Basepair signature:
cWW-F-F-F

0.61 -3224.55 6 5

90

Motif group HL_28791.1

Basepair signature:
cWW-F-F-F-F

0.61 -3539.24 6 5

91

Motif group HL_60914.1

Basepair signature:
cWW-F

0.61 -4071.10 6 5

92

Motif group HL_20167.2

Basepair signature:
cWW-F-F-F-F-F-F

0.41 -176.21 4 4

93

Motif group HL_77082.1

Basepair signature:
cWW-F-F-F-F-F-F

0.41 -231.59 4 3

Pseudoknot geometry

94

Motif group HL_01609.3

Basepair signature:
cWW-tWH-F-F-F

0.41 -241.53 4 3

T-loop with 2 bulged bases not stacked

95

Motif group HL_93616.2

Basepair signature:
cWW-cWS-F-F-F-F

0.41 -382.11 7 6

tRNA D-loop

96

Motif group HL_99748.1

Basepair signature:
cWW-F-F-cSH

0.41 -382.36 6 4

Other HL

97

Motif group HL_08100.1

Basepair signature:
cWW-F-F-F

0.41 -474.92 5 4

98

Motif group HL_71391.1

Basepair signature:
cWW-F-F-F-F

0.41 -624.83 5 4

99

Motif group HL_30680.3

Basepair signature:
cWW-F-F-F-F-F

0.41 -2540.83 5 3

Pseudoknot geometry

100

Motif group HL_78677.1

Basepair signature:
cWW-F-F

0.41 -4049.44 6 5

101

Motif group HL_75293.5

Basepair signature:
cWW-F-F-F-F-F-F-F-F

0.20 -172.80 5 4

102

Motif group HL_83808.4

Basepair signature:
cWW-tWW-F-F-F

0.20 -172.87 7 6

Pseudoknot

103

Motif group HL_86012.1

Basepair signature:
cWW-tWH-F-F-F-F

0.20 -172.99 7 5

T-loop with unstacked turn

104

Motif group HL_16991.1

Basepair signature:
cWW-cWH-cWH-F-cWH-F

0.20 -176.25 8 7

G-quadruplex fragment

105

Motif group HL_49941.1

Basepair signature:
cWW-F-F-F-F-F

0.20 -192.28 7 6

tRNA D-loop

106

Motif group HL_91939.2

Basepair signature:
cWW-tSH-tHH-tWW-F-F-F

0.20 -195.52 7 5

107

Motif group HL_73266.9

Basepair signature:
cWW-F-F-cSW-cSH-F

0.20 -214.13 5 4

108

Motif group HL_64690.6

Basepair signature:
cWW-cSW-F-F-F-F

0.20 -214.60 4 3

109

Motif group HL_40252.4

Basepair signature:
cWW-tSH-cWS-F

0.20 -215.97 7 6

110

Motif group HL_15802.1

Basepair signature:
cWW-cWW-F-F-F

0.20 -256.34 7 6

111

Motif group HL_50537.6

Basepair signature:
cWW-F-F-F

0.20 -276.16 5 4

tRNA anticodon loop with synthetase

112

Motif group HL_20811.4

Basepair signature:
cWW-cWS-F

0.20 -283.09 5 4

tRNA D-loop

113

Motif group HL_73255.1

Basepair signature:
cWW-F-F-F-F-F-F

0.20 -303.73 6 5

114

Motif group HL_33983.1

Basepair signature:
cWW-F-F-F-F-F

0.20 -310.37 6 5

115

Motif group HL_85434.1

Basepair signature:
cWW-cWW-F-F-F-F-F-F

0.20 -357.75 8 6

116

Motif group HL_99769.3

Basepair signature:
cWW-cWW-F-F-F-F

0.20 -369.54 7 6

117

Motif group HL_37369.2

Basepair signature:
cWW-tSH-F-F-F

0.20 -439.90 5 4

118

Motif group HL_97733.1

Basepair signature:
cWW-F-F-F-cSH-F

0.20 -474.35 7 6

119

Motif group HL_78197.1

Basepair signature:
cWW-F-F-F-F-F-F

0.20 -765.24 5 4

120

Motif group HL_29762.1

Basepair signature:
cWW-F-F-F-F-F

0.20 -1493.96 7 6

121

Motif group HL_69139.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F

0.20 -1649.50 7 6

122

Motif group HL_35677.3

Basepair signature:
cWW-F-F-F-F-F-F-F

0.20 -1700.51 6 5

123

Motif group HL_38649.1

Basepair signature:
cWW-tSH-F-F-F-F-F-F

0.20 -1779.19 7 6

124

Motif group HL_09452.1

Basepair signature:
cWW-F-F-F

0.20 -2468.42 5 4

125

Motif group HL_99040.1

Basepair signature:
F-F-F-F-F-F

0.20 -2944.22 6 5

126

Motif group HL_47732.1

Basepair signature:
cWW-F-F-F-F-F-F

0.20 -2976.23 7 7

127

Motif group HL_20781.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F

0.20 -3605.15 6 5

128

Motif group HL_22135.1

Basepair signature:
cWW-F-F

0.20 -4043.96 5 4

129

Motif group HL_97983.1

Basepair signature:
cWW-F-F

0.20 -4459.65 7 6

130

Motif group HL_94980.1

Basepair signature:
cWW-F-F

0.20 -4591.72 6 6

131

Motif group HL_77600.2

Basepair signature:
cWW-F-F-F-F-F

0.20 -4620.87 5 4

132

Motif group HL_76094.1

Basepair signature:
cWW-cWS-F-F

0.20 -5865.57 4 4

133

Motif group HL_09260.2

Basepair signature:
cWW-F-F-F-F

0.20 -9999.00 7 6

tRNA D-loop

134

Motif group HL_98864.1

Basepair signature:
cWW-tWH-F-F-F-F-F-F

0.00 -137.35 6 5

T-loop with unstacked turn

135

Motif group HL_93438.2

Basepair signature:
cWW-F-F-F-F-F-F-F-F

0.00 -148.02 5 4

136

Motif group HL_68257.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F

0.00 -150.46 7 6

137

Motif group HL_18423.1

Basepair signature:
cWW-tSH-tHS-F

0.00 -167.76 7 5

138

Motif group HL_41902.1

Basepair signature:
cWW-cWW-cWH-F-F-F-F-F

0.00 -177.93 8 7

139

Motif group HL_41543.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F

0.00 -178.20 8 7

140

Motif group HL_74379.3

Basepair signature:
cWW-F-F-cSS-cSS-F-F-F

0.00 -179.03 8 6

141

Motif group HL_67079.1

Basepair signature:
cWW-F-F-F-F-F-F-F

0.00 -180.81 7 6

142

Motif group HL_02483.1

Basepair signature:
cWW-tWH-F-cSH-F-F-F

0.00 -181.40 7 6

143

Motif group HL_90620.1

Basepair signature:
cWW-F-F-F-F-cSW-cSH-F

0.00 -182.48 7 6

144

Motif group HL_04642.1

Basepair signature:
cWW-F-F-F-F-F

0.00 -182.77 7 6

tRNA D-loop

145

Motif group HL_70658.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F-F

0.00 -184.68 8 6

146

Motif group HL_60266.1

Basepair signature:
cWW-cWW-tWH-F-F-F-F

0.00 -188.37 7 5

147

Motif group HL_01962.2

Basepair signature:
cWW-tWH-tWH-F

0.00 -193.07 7 5

148

Motif group HL_98252.1

Basepair signature:
cWW-tWW-F-F-F-F

0.00 -196.67 8 7

149

Motif group HL_86109.1

Basepair signature:
cWW-F-tWH-F-F-F-F-F-F-F

0.00 -198.49 8 7

150

Motif group HL_23509.1

Basepair signature:
cSH-F-F-F-F-F-F-F-F-F

0.00 -199.49 9 8

151

Motif group HL_89881.5

Basepair signature:
cWW-tHW-F-F-F-F-F-F

0.00 -200.94 7 6

152

Motif group HL_84299.4

Basepair signature:
cWW-F-F-F-F-F-F

0.00 -204.22 5 4

153

Motif group HL_87463.1

Basepair signature:
cWW-cWW-F-F-F-F-F

0.00 -204.43 7 6

154

Motif group HL_45785.1

Basepair signature:
cWW-F-F-F-F-cSH-F-F

0.00 -206.79 8 7

155

Motif group HL_05304.3

Basepair signature:
cWW-cWW-F-F-tSH-F-F-F-F-F

0.00 -210.01 8 6

156

Motif group HL_26934.1

Basepair signature:
cWW-F-F-F-F-F-F

0.00 -213.86 7 6

157

Motif group HL_81205.3

Basepair signature:
cWW-cWW-tWH-F-tWH-F-F-F-F-F

0.00 -214.17 8 7

158

Motif group HL_25061.1

Basepair signature:
cWW-F-F-F-F

0.00 -214.46 6 5

159

Motif group HL_07583.1

Basepair signature:
cWW-cWW-F-F-F-F-F-F-F-F

0.00 -214.55 8 7

160

Motif group HL_28252.8

Basepair signature:
cWW-tWH-F-F-F-F-F

0.00 -218.62 5 3

T-loop with 2 stacked bulged bases

161

Motif group HL_84847.1

Basepair signature:
cWW-F-F-F-F-tWW-F-F-F-F-F-F

0.00 -224.30 9 8

162

Motif group HL_18565.1

Basepair signature:
cWW-cWW-F-F-F-F

0.00 -225.96 5 4

163

Motif group HL_53504.3

Basepair signature:
cWW-tSH-F-F-F-F-F-F

0.00 -227.00 6 5

164

Motif group HL_08602.1

Basepair signature:
cWW-cSS-F-cSS-F-F-F-F-F

0.00 -229.85 9 8

165

Motif group HL_23010.1

Basepair signature:
cWW-F-F-F-F-F-F

0.00 -230.49 7 7

166

Motif group HL_74055.2

Basepair signature:
cWW-tWH-cWH-tSH-tHW-tHW-tSW

0.00 -239.96 9 8

167

Motif group HL_68767.1

Basepair signature:
cWW-cWS-tSH-cWS-F

0.00 -241.09 8 7

tRNA D-loop

168

Motif group HL_58224.1

Basepair signature:
cWW-F-F-F-F-F

0.00 -244.51 7 6

169

Motif group HL_28075.1

Basepair signature:
cWW-F-F-F-F-F

0.00 -251.04 5 4

170

Motif group HL_45175.1

Basepair signature:
cWW-cWS-F-F

0.00 -256.95 6 5

tRNA D-loop

171

Motif group HL_07480.2

Basepair signature:
cWW-tSH-F-F-F

0.00 -257.51 8 7

172

Motif group HL_98870.1

Basepair signature:
cWW-tSH-tWW-F-F-F-F-F

0.00 -257.93 10 9

173

Motif group HL_25847.2

Basepair signature:
cWW-F-cSH-tHW-F-F-F

0.00 -258.86 7 5

174

Motif group HL_73247.1

Basepair signature:
cWW-F-tWH-F-F-F-F-F-F-F-F-F-F

0.00 -260.28 10 9

Pseudoknot geometry

175

Motif group HL_13971.1

Basepair signature:
cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F

0.00 -270.21 10 9

176

Motif group HL_91641.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F-cSW-F-F-F-F

0.00 -272.09 11 10

177

Motif group HL_81538.2

Basepair signature:
cWW-tSH-F-F-F-F

0.00 -278.74 4 3

GNRA with tandem sheared

178

Motif group HL_02581.1

Basepair signature:
cWW-tSH-cWS-tSW-F-F-F

0.00 -284.07 10 9

tRNA D-loop

179

Motif group HL_34964.1

Basepair signature:
cWW-F-F-F-F-F

0.00 -290.03 7 6

180

Motif group HL_14757.1

Basepair signature:
cWW-cWW-F-F-tSW-tWW-cWW-tHW-tSW-F-cWH-F

0.00 -309.16 12 11

181

Motif group HL_06059.6

Basepair signature:
cWW-F-F-F-F-F-F-F

0.00 -313.38 4 4

tRNA anticodon loop

182

Motif group HL_51921.1

Basepair signature:
cWW-tSH-tSS-tHS-F-F-F-F-F-F-F-F-F-F-F

0.00 -347.05 14 13

183

Motif group HL_42046.2

Basepair signature:
cWW-tSS-F-F-F

0.00 -358.94 6 5

184

Motif group HL_25967.2

Basepair signature:
cWW-cWW-F-F-F

0.00 -387.87 6 5

185

Motif group HL_29129.3

Basepair signature:
cWW-tWH-F-F-F-F

0.00 -401.51 7 6

186

Motif group HL_21372.1

Basepair signature:
cWW-F-cSH-F-F

0.00 -402.99 6 5

187

Motif group HL_88205.2

Basepair signature:
cWW-cWS-tSW-F-F

0.00 -404.98 5 4

188

Motif group HL_97756.2

Basepair signature:
cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F

0.00 -437.17 10 9

189

Motif group HL_92488.1

Basepair signature:
cWW-cWW-F-cSS-F-F-F-F-F-F

0.00 -445.23 11 10

190

Motif group HL_11542.1

Basepair signature:
cWW-tSH-F-F-F-F-F-F

0.00 -446.35 8 8

191

Motif group HL_47787.2

Basepair signature:
cWW-F-F-F-F

0.00 -488.46 4 3

192

Motif group HL_72628.1

Basepair signature:
cWW-tSH-F-F-F-F

0.00 -542.25 5 5

193

Motif group HL_85367.2

Basepair signature:
cWW-F-F-F-F-F-F

0.00 -544.51 5 4

194

Motif group HL_80008.1

Basepair signature:
cWW-F-F-F-cSH-F

0.00 -546.10 6 5

195

Motif group HL_83632.1

Basepair signature:
cWW-F-F-F-F-F-F

0.00 -583.95 5 4

tRNA anticodon loop

196

Motif group HL_27483.1

Basepair signature:
cWW-F

0.00 -590.49 5 5

197

Motif group HL_10456.1

Basepair signature:
cWW-F-cWW-tWW-F-tHW-F-F-F-F-F-F-F

0.00 -1176.95 12 11

198

Motif group HL_66482.1

Basepair signature:
cWW-cWW-tWW-F-F-tWH-F-F-F-F-F-F-F-F

0.00 -1208.42 12 11

199

Motif group HL_80599.2

Basepair signature:
cWW-F-F-F-F-F-F-F

0.00 -1293.17 5 4

200

Motif group HL_20751.2

Basepair signature:
cWW-tHW-F-F-F-F-F-F-F-F-F

0.00 -1322.66 9 8

201

Motif group HL_32735.2

Basepair signature:
cWW-tSH-F-F-F-F-F

0.00 -1413.13 5 4

202

Motif group HL_23115.1

Basepair signature:
cWW-F-F-F-F-F

0.00 -1441.67 8 7

tRNA D-loop

203

Motif group HL_91503.7

Basepair signature:
cWW-F-F-F-F-F-F-F

0.00 -1446.99 7 6

204

Motif group HL_88558.1

Basepair signature:
cWW-tSH-F-F-F-F-F-F-F

0.00 -1451.57 7 7

205

Motif group HL_80411.1

Basepair signature:
cWW-F-cSH-F-F-F-F

0.00 -1508.61 8 7

tRNA D-loop

206

Motif group HL_93135.1

Basepair signature:
cWW-F-F-F-F-F-F

0.00 -1588.59 7 6

Pseudoknot

207

Motif group HL_93383.1

Basepair signature:
cWW-cSH-F-F-F-F-F-F

0.00 -1651.38 5 4

208

Motif group HL_67667.2

Basepair signature:
cWW-F-F

0.00 -1780.34 6 5

209

Motif group HL_59330.1

Basepair signature:
cWW-F-F-F-F-F

0.00 -1871.93 6 5

210

Motif group HL_08510.1

Basepair signature:
cWW-F-F-cSH-F-F

0.00 -1963.48 7 6

211

Motif group HL_33074.4

Basepair signature:
cWW-F-F-F-F-F-F-F-F

0.00 -1975.22 8 7

U1 small nuclear ribonucleoprotein A binding hairpin

212

Motif group HL_89346.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F

0.00 -2009.05 13 12

213

Motif group HL_50779.4

Basepair signature:
cWW-F-F-F-F-F-F-F

0.00 -2127.48 6 5

214

Motif group HL_22622.1

Basepair signature:
cWW-F-F-F-F-F

0.00 -2444.14 6 5

215

Motif group HL_73183.1

Basepair signature:
cWW-tSH-tHW-F-F-F-F-F-F-F-F-F

0.00 -2491.01 9 8

Pseudoknot geometry with G-bulge

216

Motif group HL_81312.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F-F

0.00 -2607.19 8 7

217

Motif group HL_19210.3

Basepair signature:
cWW-F-F-F-F-F-F-F-F

0.00 -2660.18 6 5

218

Motif group HL_55305.1

Basepair signature:
cWW-F-F-F-F-F

0.00 -2711.05 8 6

219

Motif group HL_50851.1

Basepair signature:
cWW-cWH-cWH-cWH-cWH-F

0.00 -2721.70 9 8

G-quadruplex fragment

220

Motif group HL_51447.1

Basepair signature:
cWW-F-F-F-F-F

0.00 -2731.46 5 4

221

Motif group HL_01255.1

Basepair signature:
F-F-F-F-F-F-F-F

0.00 -2755.54 8 7

222

Motif group HL_89199.2

Basepair signature:
cWW-F-F-F

0.00 -2840.27 5 5

Mini UNCG

223

Motif group HL_16398.2

Basepair signature:
cWW-F-F-F-F-F-F

0.00 -2852.45 8 7

224

Motif group HL_04725.1

Basepair signature:
cWW-cWS-cWW-cWW-cWS

0.00 -2922.74 8 7

225

Motif group HL_42998.2

Basepair signature:
cWW-F-F-F-F-F-F

0.00 -2983.42 5 3

226

Motif group HL_07903.1

Basepair signature:
cWW-cWW-F-F-F-F-F-F-F-F-F

0.00 -3018.90 10 9

227

Motif group HL_31581.6

Basepair signature:
cWW-cHS-F-F-F-cWW-F-F-F

0.00 -3024.57 8 7

228

Motif group HL_63355.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F-F-F-F

0.00 -3036.70 9 7

229

Motif group HL_64292.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F

0.00 -3042.25 11 10

230

Motif group HL_29958.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F

0.00 -3109.87 10 9

231

Motif group HL_15118.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F-F

0.00 -3260.75 8 7

232

Motif group HL_74292.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F

0.00 -3329.86 6 5

233

Motif group HL_59564.1

Basepair signature:
cWW-F-cSS-F-cSS-F-F-F-F-F-F-F-F-F-F-F-F

0.00 -3618.16 15 14

234

Motif group HL_24792.1

Basepair signature:
cWW-cWS-F-F-F

0.00 -3666.44 7 6

235

Motif group HL_78284.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F-F-F

0.00 -3710.74 7 6

236

Motif group HL_88364.2

Basepair signature:
cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

0.00 -3717.37 11 11

237

Motif group HL_99867.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F

0.00 -3720.12 6 5

238

Motif group HL_00317.1

Basepair signature:
cWW-F-cSS-F-F-F-F-F-F-F-F-F-F-F-F-F-F

0.00 -3741.97 15 14

239

Motif group HL_99324.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F

0.00 -3752.73 11 11

240

Motif group HL_70751.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F-F

0.00 -3892.11 7 6

241

Motif group HL_85461.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F-F-F-F-F-F

0.00 -3920.84 14 13

242

Motif group HL_60293.1

Basepair signature:
cWW-cWH-F-cWH-cHW-cHW-cWH-cHW-cWH-F-cWH-cWH-cWH-F

0.00 -3951.93 16 15

G-quadruplex

243

Motif group HL_36684.4

Basepair signature:
cWW-F-F-F-F-F-F-F-F-F

0.00 -3996.95 6 5

244

Motif group HL_21400.1

Basepair signature:
cWW-tWH-tSW-cWW-cWH-cHW-cWH-cWH-cHW-cWH-cHW-cWH-cWH-cWH-cWH-cWH

0.00 -3997.12 18 17

G-quadruplex

245

Motif group HL_12870.1

Basepair signature:
cWW-tHW-F-F-F-F-F-F-F-F-F

0.00 -4005.44 9 8

246

Motif group HL_12758.3

Basepair signature:
cWW-tSH-F-cHW-F-F-cWH-cHW-cWH-cHW-cWH-cWH-F-tSH-F-cHW-F-cWH-cWH

0.00 -4008.11 19 18

G-quadruplex

247

Motif group HL_35354.1

Basepair signature:
cWW-cWH-cHW-F-cWH-cHW-F-F-tHH-cWH-tWW-cWH-F-tWW-cWH-F-cWH

0.00 -4051.54 18 17

248

Motif group HL_50418.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F-F

0.00 -4078.06 7 6

249

Motif group HL_26631.1

Basepair signature:
cWW-F-F-F

0.00 -4107.85 5 4

250

Motif group HL_68572.1

Basepair signature:
cWW-F-F-F-F-F-F-F

0.00 -4347.83 8 7

251

Motif group HL_73916.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F

0.00 -4438.43 32 32

252

Motif group HL_58539.1

Basepair signature:
cWW-tWS-F-tHW-F-F-F-F-F-F-F-F

0.00 -5755.06 11 9

253

Motif group HL_07951.3

Basepair signature:
cWW-F-F

0.00 -9999.00 6 5

tRNA D-loop

Coloring options: