RNA 3D Hub

JAR3D Query RF03072-CCF-3.98 completed
Run on Motif Atlas Version using the Rfam secondary structure. Run with the CaCoFold secondary structure.

Rfam family RF03072 maps to these 6 chains: 9CXF|1|A, 9E73|1|A, 9E74|1|A, 9E75|1|A, 9ELY|1|A, 9G7C|1|A See more about them at RNA 3D Hub by filtering on the chain or the Rfam family.

Loop 9 Hairpin loop

Column numbers: 365-494 - View nucleotides in PDB file(s) 
    Scored sequences and counts

    
    ------------------------------AAA-------------------------------------------------------------------------------------------------   48

    
    ------------------------------GAAAA-----------------------------------------------------------------------------------------------   42

    
    ------------------------------GAAA------------------------------------------------------------------------------------------------   18

    
    GUUAUAUCAAA--------------GAGACAAAGG-----------------------------------------------------------------GUCUC-----------------------GC   14

    
    ------------------------------AAAAA-----------------------------------------------------------------------------------------------   14

    
    ------------------------------UAAAA-----------------------------------------------------------------------------------------------   13

    
    GUUCUACUUUCU--UUGGGGC---------AAUACC-------------------------------------------------------------------------GCCUC--------------GC    9

    
    ------------------------------GGAAA-----------------------------------------------------------------------------------------------    9

    
    U-G--C------------------------GGAA------------------------------------------------------------------------------------------G---CG    7

    
    ------------------------------UUAAAU----------------------------------------------------------------------------------------------    7

    
    A-----------------------------AUAA-----------------------------------------------------------------------------------------------A    7

    
    ------------------------------UUAAA-----------------------------------------------------------------------------------------------    7

    
    ------------------------------AAAA------------------------------------------------------------------------------------------------    7

    
    ------------------------------AUUAAA----------------------------------------------------------------------------------------------    6

    
    ------------------------------AAAAU-----------------------------------------------------------------------------------------------    6

    
    ------------------------------GAGA------------------------------------------------------------------------------------------------    6

    
    ------------------------------AAUAAA----------------------------------------------------------------------------------------------    5

    
    ------------------------------GUAA------------------------------------------------------------------------------------------------    5

    
    ------------------------------UAAA------------------------------------------------------------------------------------------------    5

    
    ------------------------------AAU-------------------------------------------------------------------------------------------------    5

    
    GAGUA--UCGCGAC----------------AUCCG---------------------------------------------------------------------------------GUUGCG------AC    4

    
    ------------------------------AAAAAAAUUAUGG---------------------------------------------------------------------------------------    4

    
    ------------------------------AAAUA-----------------------------------------------------------------------------------------------    4

    
    ------------------------------CGAUU-----------------------------------------------------------------------------------------------    4

    
    G-UUCUACUUU-CUUUGGGGC---------AAUACC-------------------------------------------------------------------------GCCUC--------------GC    3

    
    GUUUUAUUCUUAU-----------GGGGCAAUAGG-----------------------------------------------------------------UGCCUC----------------------GC    3

    
    GUUAUAUCAAU--------------GAGACAAAGG-----------------------------------------------------------------GUCUC-----------------------GC    3

    
    GCGGGAUAUGCAGC----------------AUAGG---------------------------------------------------------------------------------GCUGCA-------C    3

    
    GUUGAUUUCAAGGC----------------AUACG---------------------------------------------------------------------------------GCCUUG-------C    3

    
    ------------------------------UUGUAU----------------------------------------------------------------------------------------------    3

    
    ------------------------------AUAAA-----------------------------------------------------------------------------------------------    3

    
    ------------------------------AUGAA-----------------------------------------------------------------------------------------------    3

    
    ------------------------------GUAAA-----------------------------------------------------------------------------------------------    3

    
    ------------------------------UAUAA-----------------------------------------------------------------------------------------------    3

    
    ------------------------------AAAG------------------------------------------------------------------------------------------------    3

    
    ------------------------------GCAA------------------------------------------------------------------------------------------------    3

    
    ------------------------------GCGA------------------------------------------------------------------------------------------------    3

    
    ------------------------------AA--------------------------------------------------------------------------------------------------    3

    
    G-UUCUACUUUC-UUUGGGGC---------AAUACC-------------------------------------------------------------------------GCCUC--------------GC    2

    
    GGUCGUUUCCGCGGCC--------------AUCCA-------------------------------------------------------------------------------GGCCGC------C--U    2

    
    GUUAUAACAAA--------------GAGACAAAGG-----------------------------------------------------------------GUCUC-----------------------GC    2

    
    ------CCGGCGACC---------------CAGAU--------------------------------------------------------------------------------GGUUGCCGUCC----    2

    
    ------------------------------ACCCUAAUAGGUUAUAACAA--------------------------------------------------------------------------------    2

    
    ------------------------------AUAAAAAUUGAG----------------------------------------------------------------------------------------    2

    
    U-G--C------------------------GGAA------------------------------------------------------------------------------------------G---CA    2

    
    ------------------------------AUUUAA----------------------------------------------------------------------------------------------    2

    
    C-----------------------------CCAG-----------------------------------------------------------------------------------------------G    2

    
    ------------------------------AUAAC-----------------------------------------------------------------------------------------------    2

    
    ------------------------------CUUGA-----------------------------------------------------------------------------------------------    2

    
    ------------------------------UAAG------------------------------------------------------------------------------------------------    2

    
    ------------------------------UAUA------------------------------------------------------------------------------------------------    2

    
    UUUCAUGG----------------------AACCGUAAGGAAGGACGCUACAAGAAUCCCCGCUUUUCUAUGCCGUGGAUCCAGCGACUCCCCAAGGAUG----------------------CCAA--AA    1

    
    U-A-GGAAAAUAAUA-AUCUAUUCCAGUCUAGUACAUAGUACUUA-------------------------------------------------------AGGCU--AAUUGAU--GUUAUUUUGC--UG    1

    
    G----UGGUAU--GGAAGGUU-AAGAUGUACAUGGAUAUUAUCCUA------------------------------------------------------UGAGUUUCAAACUUUCCGAUUACUG----C    1

    
    UGGGA--AGUGGG-----------------AGGCGGGAAAGUUCCGCCAACGAGUUUCUUGCACUGA--------------------------------------------------UCCAUUGUAAUCA    1

    
    A------CUUGC------------------UUUGUAGGAAAGACAAACUUCGGUUGCGCAUCCGUCAAAU------------------------------------------------GUAAG-----AU    1

    
    A------CUUGC------------------UUUGUAGGAAAGACAAACUUCGGUUGGGCAUCCGUCAAAU------------------------------------------------GUAAG-----AU    1

    
    A----CUUGC--------------------UUUGUAGGAAAGACAAACUUCGGUUGGGCAUCCGUCAAAU--------------------------------------------------GUAAG---AU    1

    
    GCG--GGUGCUG------------------CUCUUACUAUAGGCGCGGGGACGAGACACCCCGA------------------------------------------------------CAUCAUU---GC    1

    
    GUGUGGCCGA-UGGU-ACGGUA--------GAUAAUACGGGG------------------------------------------------------------------UGCUGUCAUCAGUUGGUUG-CC    1

    
    GGAAGGAAGGA---------CAUGCCGGCGUAA-------------------------------------------------------------------CGGCGGCAUGGGCCGG---UCAUUCU--UU    1

    
    G-UUCUAUUUUUCUUUGGGGC---------AAUACC-------------------------------------------------------------------------GCCUC--------------GC    1

    
    GUCGCUACUUUUUUGAGGCA----------AUACG---------------------------------------------------------------------------UGCCUCG------------C    1

    
    GUUCUACUUUUU--UUGGGGC---------AAUUACC------------------------------------------------------------------------GCCUC--------------GC    1

    
    G-UAUUACAUAUAAAUGCAGC---------AUAGG--------------------------------------------------------------------------GCUGC--------------GC    1

    
    G-UUCUACUUUCU-UUGGGGC---------AAUACC-------------------------------------------------------------------------GCCUC--------------GC    1

    
    GUCGCACUUUUUU-----------GAGGCAAUACG-----------------------------------------------------------------UGCCUC----------------------GC    1

    
    GUCUUAUUCUUUU-----------GAGGCAAUAGG-----------------------------------------------------------------UGUCUC----------------------GC    1

    
    GUUCUACUUUUU--UUGGGGC---------AAUACC-------------------------------------------------------------------------GCCUC--------------GC    1

    
    G-C-UGACAUUUUCGCGGC-----------ACGGAC---------------------------------------------------------------------------GCCGCGA-----------C    1

    
    G-GUGGUAAAUUU-----------------CUCAAGU--------------------------------------------------------------------------------GAAUUUAUUA-UG    1

    
    G-UCAUACACACUGAGGCA-----------AUAGG----------------------------------------------------------------------------UGCCUC-----------GC    1

    
    GCUGACAUUUUCGCGGC-------------ACGGAC-----------------------------------------------------------------------------GCCGUG---------AC    1

    
    GUCAUACACACU------------GAGGCAAUAGG-----------------------------------------------------------------UGCCUC----------------------GC    1

    
    G-GAGAUUGUUUUGCGGC------------GUGGU-----------------------------------------------------------------------------GCUGCA----------CC    1

    
    GUUAUAUCACAAA------------GAGACAAAGG-----------------------------------------------------------------GUCUC-----------------------GC    1

    
    AACGAUAAGC--------------AAGGACGUGGG-----------------------------------------------------------------GUCCU-----------------------GC    1

    
    G-AAACCAAGCCGAGGC-------------GUCCA------------------------------------------------------------------------------GCCUC-------A---C    1

    
    G-UUACACAUAAAAGAC-------------AUAGG------------------------------------------------------------------------------GUCUU----------GC    1

    
    G-UUAUAUAAAUGAGAC-------------AAAGG------------------------------------------------------------------------------GUCUC----------GC    1

    
    GACGAUAAGC--------------AAGGACGUGGG-----------------------------------------------------------------GUCCU-----------------------GC    1

    
    GACGAUAAGCAAGGAC--------------GUGGG-------------------------------------------------------------------------------GUCCU---------GC    1

    
    GUA-AUAUCAAAGAGAC-------------AAAGG------------------------------------------------------------------------------GUCUC----------GC    1

    
    GUAAAUU--GC-------------AGCGACAUACG-----------------------------------------------------------------GUCG----------------CA------AC    1

    
    GUCAGACUGAA--------------GAGGCAUACC-----------------------------------------------------------------GCCUC-----------------------GC    1

    
    GUUAA-ACAUAAAAGAC-------------AUAGG------------------------------------------------------------------------------GUCUU----------GC    1

    
    GUUAUACUCAAAAGGC--------------AUCCC-------------------------------------------------------------------------------GCCUU---------GC    1

    
    GUUUAUACGA---------------GCGGCAUACC-----------------------------------------------------------------GUCGC---------------------G-AC    1

    
    G-GCCGAUUUUUGCGG--------------CAACG-------------------------------------------------------------------------------CCGCA---------CU    1

    
    GAUCGGCUUU---------------GGGGCAAAGA-----------------------------------------------------------------GCCCC-----------------------AC    1

    
    GAUCGGCUUUGGGGC---------------AAAGA--------------------------------------------------------------------------------GCCCC--------AC    1

    
    GUCAUACUCAGAGGC---------------AUACG--------------------------------------------------------------------------------GCCUC--------GC    1

    
    --------------------GCGGCUUUGCAUUCU-----------------------------------------------------------------GCGAGGCUGC----------------G---    1

    
    -AC--UGAGGG-----------------UCCCGAU-----------------------------------------------------------------GU-----------------CCCUCAU--GA    1

    
    G-GGUUUUAUGCGAC---------------AUAGG--------------------------------------------------------------------------------GUUGCA--------C    1

    
    G-GUGGUUUUGCGAC---------------AAGUG--------------------------------------------------------------------------------GUCGC--------CC    1

    
    GAUAUAUUUGAGAC----------------AGGUA---------------------------------------------------------------------------------GUCUCA-------C    1

    
    GGGUUUUAUGCAAC----------------AUAGG---------------------------------------------------------------------------------GUUGCA-------C    1

    
    GUCAGUCAAGAGGC----------------AUCCG---------------------------------------------------------------------------------GCCUC-------GC    1

    
    GUUAGACAAGAGGC----------------AUACG---------------------------------------------------------------------------------GCCUC-------GC    1

    
    GUUAGAUGAGAGGC----------------ACGGG---------------------------------------------------------------------------------GCCUC-------GC    1

    
    GUUCC-------------------------AGAAGAGGGCAUGCGCCCC-------------------------------------------------------------------------------GC    1

    
    GUUUA-CACGCGAC----------------AUGGU---------------------------------------------------------------------------------GCCGCG------GC    1

    
    -----CCGGAGGCC----------------CAGAU---------------------------------------------------------------------------------GACCUCCGACC---    1

    
    -----CCGGGGAGC----------------CAGAU---------------------------------------------------------------------------------GUUCCUCGCCA---    1

    
    -----CCGGGGGAU----------------ACCGA---------------------------------------------------------------------------------GUUCCCCGCCC---    1

    
    -----CCGGGGGGC----------------CGGAU---------------------------------------------------------------------------------GUCCCCCGUAC---    1

    
    -----CCGGGGGUC----------------CGGAU---------------------------------------------------------------------------------GUCCCCCGUAC---    1

    
    C--CCUCCCGU-------------------CAGAU------------------------------------------------------------------------------------ACGGGAACCAG    1

    
    G-C--CGGGGGAU-----------------CAGAC----------------------------------------------------------------------------------AUCCUCCG---GU    1

    
    G-UUUCUA-----------------GGGGUAAUUCC----------------------------------------------------------------GCCCC-----------------------GC    1

    
    GAU--UACAGUCGC----------------AUCCC---------------------------------------------------------------------------------GCGGCU------UC    1

    
    GUUCA------------------GGGUCGCAUCCC-----------------------------------------------------------------GCGAUCC----------------------C    1

    
    A---CACGCCG------------------UCCGAC-----------------------------------------------------------------A------------------CGGCGUCA--G    1

    
    C---CCGGCCGU------------------CAGAU-----------------------------------------------------------------------------------GCGGUCGUC--G    1

    
    G----------------------GGAGGGCCCGAU-----------------------------------------------------------------GCCCUCCGG-------------------AC    1

    
    G----GAGGG--------------------UCCAGAUGU---------------------------------------------------------------------------------CCCUCAU-GA    1

    
    GCGU--UAUGCAGC----------------AGAGG---------------------------------------------------------------------------------GCUGCA-------C    1

    
    GUUGA--UGGCAAC----------------AUAGU---------------------------------------------------------------------------------GUUGC-------GC    1

    
    UGG--ACGGGU-------------------CCGAU------------------------------------------------------------------------------------GCCCGUCG-CU    1

    
    ------------------------------GAAUUAUACAUAAUAGUAAUUUA-----------------------------------------------------------------------------    1

    
    ------------------------------GAAUUAUACAUAUAGUUAAUUUA-----------------------------------------------------------------------------    1

    
    ------CACGACAU----------------CAGAU---------------------------------------------------------------------------------GUGUCGUGU----G    1

    
    -----CGGAGG-U-----------------CCAGAU---------------------------------------------------------------------------------GUCCUCUGCA---    1

    
    ----CG--GAGGGC----------------CCGAU---------------------------------------------------------------------------------GCCCUCCAC----C    1

    
    GAAAUUGCAGC-------------------AUGGG------------------------------------------------------------------------------------GCUGCA----C    1

    
    GUUAU-------------------GGGCGCAUAGG-----------------------------------------------------------------GCGCCC-----------------------C    1

    
    ------------------------------UUAAGUAAUUAAAGUACAUAAU------------------------------------------------------------------------------    1

    
    GAU--CGGCCG-------------------ACCCU------------------------------------------------------------------------------------CGGCCC---GG    1

    
    GUG----AAGCGGC----------------AUAGG---------------------------------------------------------------------------------GCUGCU-------C    1

    
    UUG--CUCCCG-------------------GCUCU------------------------------------------------------------------------------------CGGGGG---AG    1

    
    ---GUGUGACC-------------------AAAGU------------------------------------------------------------------------------------GGUCAUGG---    1

    
    C-G--GUAGGU-------------------CCGAC------------------------------------------------------------------------------------ACCUAC---CG    1

    
    ------------------------------ACCCUAACAGGUUAGAACAA--------------------------------------------------------------------------------    1

    
    ------------------------------ACCUUAACGGGUUAGAACAA--------------------------------------------------------------------------------    1

    
    ------------------------------ACCUUAAUUGGUGAUAAUAA--------------------------------------------------------------------------------    1

    
    -----AUUG---------------------AUCAAAG------------------------------------------------------------------------------------UGGUCAUCC    1

    
    G----GCAUUC-------------------AAAACC-----------------------------------------------------------------------------------GAAUGC----G    1

    
    G----GCAUUC-------------------AAAAUC-----------------------------------------------------------------------------------GAAUGC----G    1

    
    G----GCAUUC-------------------CGAAUC-----------------------------------------------------------------------------------GAAUGC----G    1

    
    GUCUU----G--------------------AUAGACAAAAU---------------------------------------------------------------------------------------UU    1

    
    UAU--UAGCU--------------------ACGUC-------------------------------------------------------------------------------------AGCUA----G    1

    
    -------UAUU-------------------CAAA-------------------------------------------------------------------------------------AAUAAAUU-CC    1

    
    C-----------------------------CUUAAUUGGUGAUAA-----------------------------------------------------------------------------------UA    1

    
    AAUACUAAAAA-----------------------------------------------------------------------------------------------------------------ACACAU    1

    
    U-A---------------------------ACCAAAAAAAUUC-------------------------------------------------------------------------------------UA    1

    
    ------------------------------CCGGUAAAGAAAUUU-------------------------------------------------------------------------------------    1

    
    ------------------------------AAAAAAAAUUAUGG--------------------------------------------------------------------------------------    1

    
    CACCG-------------------------GGCACG------------------------------------------------------------------------------------------G-GG    1

    
    ------------------------------GGAAAAUACUAUA---------------------------------------------------------------------------------------    1

    
    ------------------------------GGACUAUACUAUA---------------------------------------------------------------------------------------    1

    
    U-U--AU-----------------------CCUGU----------------------------------------------------------------------------------------AU---AA    1

    
    ------------------------------AAAAAAUUAUGG----------------------------------------------------------------------------------------    1

    
    --C--GCC----------------------GUA-----------------------------------------------------------------------------------------GGC---GA    1

    
    ------------------------------AAAAAAUAAUG-----------------------------------------------------------------------------------------    1

    
    ------------------------------ACGAUAUUCUG-----------------------------------------------------------------------------------------    1

    
    G----CGU----------------------AAU-----------------------------------------------------------------------------------------ACA----C    1

    
    U-G--C------------------------GAGA------------------------------------------------------------------------------------------G---CA    1

    
    ------------------------------AUAAUAAUA-------------------------------------------------------------------------------------------    1

    
    C-A---------------------------UCUU----------------------------------------------------------------------------------------------UG    1

    
    ------------------------------ACAAUCA---------------------------------------------------------------------------------------------    1

    
    ------------------------------CGUUAGU---------------------------------------------------------------------------------------------    1

    
    ------------------------------GGUUAAA---------------------------------------------------------------------------------------------    1

    
    A-----------------------------CUCGG----------------------------------------------------------------------------------------------U    1

    
    G-----------------------------CGCAG----------------------------------------------------------------------------------------------C    1

    
    U-----------------------------GUAAA----------------------------------------------------------------------------------------------A    1

    
    ------------------------------AAAAA----------------------------------------------------------------------------------------------A    1

    
    ------------------------------AGAAAA----------------------------------------------------------------------------------------------    1

    
    ------------------------------CAUAAA----------------------------------------------------------------------------------------------    1

    
    ------------------------------CGGCGA----------------------------------------------------------------------------------------------    1

    
    ------------------------------GAAAAA----------------------------------------------------------------------------------------------    1

    
    ------------------------------GGAAAA----------------------------------------------------------------------------------------------    1

    
    ------------------------------UGAGAU----------------------------------------------------------------------------------------------    1

    
    ------------------------------UUAGGU----------------------------------------------------------------------------------------------    1

    
    ------------------------------UUAUAU----------------------------------------------------------------------------------------------    1

    
    C-----------------------------AACG-----------------------------------------------------------------------------------------------A    1

    
    C-----------------------------AUAAA-----------------------------------------------------------------------------------------------    1

    
    C-----------------------------CUCG-----------------------------------------------------------------------------------------------G    1

    
    C-----------------------------GCAA-----------------------------------------------------------------------------------------------G    1

    
    C-----------------------------GCAG-----------------------------------------------------------------------------------------------G    1

    
    C-----------------------------UUAC-----------------------------------------------------------------------------------------------G    1

    
    ------------------------------AAAUU-----------------------------------------------------------------------------------------------    1

    
    ------------------------------ACAAA-----------------------------------------------------------------------------------------------    1

    
    ------------------------------AGACA-----------------------------------------------------------------------------------------------    1

    
    ------------------------------AUCAA-----------------------------------------------------------------------------------------------    1

    
    ------------------------------AUGUA-----------------------------------------------------------------------------------------------    1

    
    ------------------------------AUUCC-----------------------------------------------------------------------------------------------    1

    
    ------------------------------CAUGA-----------------------------------------------------------------------------------------------    1

    
    ------------------------------CGUGU-----------------------------------------------------------------------------------------------    1

    
    ------------------------------CUUGC-----------------------------------------------------------------------------------------------    1

    
    ------------------------------GACCA-----------------------------------------------------------------------------------------------    1

    
    ------------------------------GUAUU-----------------------------------------------------------------------------------------------    1

    
    ------------------------------UCUUU-----------------------------------------------------------------------------------------------    1

    
    ------------------------------UUAGA-----------------------------------------------------------------------------------------------    1

    
    ------------------------------UUUAG-----------------------------------------------------------------------------------------------    1

    
    U-----------------------------AAA------------------------------------------------------------------------------------------------A    1

    
    U-----------------------------AGU------------------------------------------------------------------------------------------------A    1

    
    ------------------------------AAAU------------------------------------------------------------------------------------------------    1

    
    ------------------------------AAGA------------------------------------------------------------------------------------------------    1

    
    ------------------------------AUAA------------------------------------------------------------------------------------------------    1

    
    ------------------------------CAGA------------------------------------------------------------------------------------------------    1

    
    ------------------------------CUUA------------------------------------------------------------------------------------------------    1

    
    ------------------------------GACA------------------------------------------------------------------------------------------------    1

    
    ------------------------------GGAA------------------------------------------------------------------------------------------------    1

    
    ------------------------------GUGU------------------------------------------------------------------------------------------------    1

    
    ------------------------------UAAU------------------------------------------------------------------------------------------------    1

    
    ------------------------------UUAG------------------------------------------------------------------------------------------------    1

    
    ------------------------------UUCG------------------------------------------------------------------------------------------------    1

    
    ------------------------------UUCU------------------------------------------------------------------------------------------------    1

    
    ------------------------------UUUA------------------------------------------------------------------------------------------------    1

    
    ------------------------------UUUU------------------------------------------------------------------------------------------------    1

    
    ------------------------------UUU-------------------------------------------------------------------------------------------------    1

    
    ------------------------------AU--------------------------------------------------------------------------------------------------    1

    
    ------------------------------UU--------------------------------------------------------------------------------------------------    1

    
    Omitted sequenced and counts

    
    ------------------------------A---------------------------------------------------------------------------------------------------    1
Click on headings to reorder table
# Matching motif group Acceptance Rate Mean Cutoff Score Full Edit Distance Interior Edit Distance Basepair Diagram and most common annotation
1

Motif group HL_75660.5

Basepair signature:
cWW-F

39.84 -4976.31 3 2

2

Motif group HL_38168.1

Basepair signature:
cWW-F

36.76 -4981.78 3 2

3

Motif group HL_53890.2

Basepair signature:
cWW-F-F-F

32.24 -3491.77 3 2

4

Motif group HL_04783.2

Basepair signature:
cWW-F-F-F

27.31 -3410.82 3 2

5

Motif group HL_82710.2

Basepair signature:
cWW-F-F-F

22.38 -3580.36 4 2

6

Motif group HL_38901.2

Basepair signature:
cWW-F-cSH

21.56 -3723.08 3 2

tRNA D-loop

7

Motif group HL_56334.1

Basepair signature:
cWW-F

12.53 -3884.75 3 3

Mini UNCG

8

Motif group HL_48417.5

Basepair signature:
cWW-F-F

10.68 -3262.56 3 2

9

Motif group HL_13189.1

Basepair signature:
cWW-F-F

10.47 -3481.95 3 3

10

Motif group HL_37824.7

Basepair signature:
cWW-F-F-F-F

9.86 -3306.27 3 2

GNRA

11

Motif group HL_87954.2

Basepair signature:
cWW-tSW-F

9.03 -3559.12 4 2

12

Motif group HL_70782.2

Basepair signature:
cWW-F

8.62 -3818.98 3 4

13

Motif group HL_69752.2

Basepair signature:
cWW-F

8.21 -5015.90 4 3

14

Motif group HL_80709.3

Basepair signature:
cWW-F-F-F

8.21 -5348.73 3 2

15

Motif group HL_48778.2

Basepair signature:
cWW-F

8.01 -3829.97 3 3

Mini UNCG

16

Motif group HL_50006.2

Basepair signature:
cWW-F-F

7.39 -3493.34 4 2

17

Motif group HL_46501.1

Basepair signature:
cWW-cWS

6.37 -3634.83 4 3

18

Motif group HL_32346.4

Basepair signature:
cWW-F

5.95 -3889.77 3 3

19

Motif group HL_93535.1

Basepair signature:
cWW-F-F-F-F

5.75 -4676.71 4 2

20

Motif group HL_57176.2

Basepair signature:
cWW-F-F-F

5.34 -5280.49 3 2

Pseudoknot geometry with 3' bulge

21

Motif group HL_65794.5

Basepair signature:
cWW-F-F-F-F

5.34 -7690.26 3 2

Pseudoknot geometry

22

Motif group HL_52953.3

Basepair signature:
cWW-F-F-F-F

4.93 -7840.95 3 2

23

Motif group HL_50318.1

Basepair signature:
cWW-cSH-F-F

4.72 -3525.04 6 4

24

Motif group HL_56131.2

Basepair signature:
cWW-F-F

3.90 -3396.03 4 4

25

Motif group HL_47787.2

Basepair signature:
cWW-F-F-F-F

3.90 -4631.57 3 2

26

Motif group HL_43517.1

Basepair signature:
cWW-F-F-F

3.70 -3620.69 5 4

27

Motif group HL_86870.2

Basepair signature:
cWW-F-F-F

3.49 -3492.34 4 3

28

Motif group HL_56676.1

Basepair signature:
cWW-F-F

3.49 -4657.49 4 3

29

Motif group HL_78677.1

Basepair signature:
cWW-F-F

2.87 -4119.49 4 3

30

Motif group HL_07886.3

Basepair signature:
cWW-F-F-F

2.67 -3484.74 4 3

31

Motif group HL_76094.1

Basepair signature:
cWW-cWS-F-F

2.46 -4135.55 4 3

32

Motif group HL_57875.1

Basepair signature:
cWW-F-F

2.26 -3584.47 4 3

33

Motif group HL_59843.1

Basepair signature:
cWW-F-F-F-F

2.26 -4610.30 4 3

34

Motif group HL_98864.1

Basepair signature:
cWW-tWH-F-F-F-F-F-F

1.85 -2100.90 7 6

T-loop with unstacked turn

35

Motif group HL_94980.1

Basepair signature:
cWW-F-F

1.85 -5238.78 5 5

36

Motif group HL_29966.1

Basepair signature:
cWW-F-F-F

1.85 -5368.52 5 4

37

Motif group HL_32392.1

Basepair signature:
cWW-F-F

1.64 -3682.20 4 5

38

Motif group HL_49922.4

Basepair signature:
cWW-F-F-F

1.44 -3561.23 3 2

39

Motif group HL_81100.2

Basepair signature:
cWW

1.44 -6736.81 6 4

40

Motif group HL_39243.1

Basepair signature:
cWW-F-F-F-F

1.44 -7551.60 4 3

41

Motif group HL_13963.3

Basepair signature:
cWW-F-F

1.03 -3522.40 5 4

42

Motif group HL_08100.1

Basepair signature:
cWW-F-F-F

0.82 -3486.80 5 3

43

Motif group HL_66103.1

Basepair signature:
cWW-F-F

0.82 -3614.96 5 3

44

Motif group HL_37344.1

Basepair signature:
cWW-F-F

0.82 -4139.58 6 4

45

Motif group HL_20535.2

Basepair signature:
cWW-F-F-F-F

0.82 -4576.20 5 3

46

Motif group HL_55195.3

Basepair signature:
cWW-F

0.82 -5101.08 4 3

47

Motif group HL_10540.1

Basepair signature:
cWW-F-F-F-F-F

0.62 -3155.28 5 3

48

Motif group HL_22135.1

Basepair signature:
cWW-F-F

0.62 -5189.47 4 4

49

Motif group HL_10453.3

Basepair signature:
cWW-F-F-F-F-F

0.62 -5238.70 5 3

tRNA anticodon loop

50

Motif group HL_99040.1

Basepair signature:
F-F-F-F-F-F

0.62 -6603.00 6 5

51

Motif group HL_88205.2

Basepair signature:
cWW-cWS-tSW-F-F

0.41 -2314.94 6 5

52

Motif group HL_87553.1

Basepair signature:
cWW-F-F-F-F-F

0.41 -2996.41 5 4

53

Motif group HL_34617.5

Basepair signature:
cWW-tSW-F

0.41 -3439.69 4 3

UNCG

54

Motif group HL_62934.1

Basepair signature:
cWW-tSH-F

0.41 -3553.97 4 3

55

Motif group HL_71391.1

Basepair signature:
cWW-F-F-F-F

0.41 -3600.10 4 3

56

Motif group HL_35941.1

Basepair signature:
cWW-F

0.41 -4147.20 5 5

57

Motif group HL_65313.1

Basepair signature:
cWW-F-F-F

0.41 -5400.50 6 5

58

Motif group HL_30680.3

Basepair signature:
cWW-F-F-F-F-F

0.41 -7178.44 5 4

Pseudoknot geometry

59

Motif group HL_28791.1

Basepair signature:
cWW-F-F-F-F

0.41 -7901.52 6 5

60

Motif group HL_81205.3

Basepair signature:
cWW-cWW-tWH-F-tWH-F-F-F-F-F

0.21 -476.74 10 9

61

Motif group HL_08602.1

Basepair signature:
cWW-cSS-F-cSS-F-F-F-F-F

0.21 -1297.58 10 9

62

Motif group HL_20167.2

Basepair signature:
cWW-F-F-F-F-F-F

0.21 -1740.19 5 4

63

Motif group HL_01962.2

Basepair signature:
cWW-tWH-tWH-F

0.21 -1776.29 7 6

64

Motif group HL_77436.5

Basepair signature:
cWW-F-F-F-F-F

0.21 -2139.93 4 3

T-loop related

65

Motif group HL_41464.2

Basepair signature:
cWW-F-F-F-F-F

0.21 -2424.69 6 4

66

Motif group HL_86769.4

Basepair signature:
cWW-cWW-cSH-F

0.21 -2446.55 5 4

67

Motif group HL_01609.3

Basepair signature:
cWW-tWH-F-F-F

0.21 -2528.60 5 3

T-loop with 2 bulged bases not stacked

68

Motif group HL_75293.5

Basepair signature:
cWW-F-F-F-F-F-F-F-F

0.21 -2697.09 6 5

69

Motif group HL_18565.1

Basepair signature:
cWW-cWW-F-F-F-F

0.21 -2901.79 6 4

70

Motif group HL_42046.2

Basepair signature:
cWW-tSS-F-F-F

0.21 -2905.78 6 4

71

Motif group HL_73255.1

Basepair signature:
cWW-F-F-F-F-F-F

0.21 -2970.57 8 6

72

Motif group HL_28075.1

Basepair signature:
cWW-F-F-F-F-F

0.21 -3008.57 5 3

73

Motif group HL_15802.1

Basepair signature:
cWW-cWW-F-F-F

0.21 -3009.81 7 6

74

Motif group HL_27483.1

Basepair signature:
cWW-F

0.21 -3478.03 5 4

75

Motif group HL_80922.2

Basepair signature:
cWW-tSH-F

0.21 -3493.44 4 3

76

Motif group HL_25967.2

Basepair signature:
cWW-cWW-F-F-F

0.21 -3887.26 6 4

77

Motif group HL_25061.1

Basepair signature:
cWW-F-F-F-F

0.21 -4187.56 7 5

78

Motif group HL_59330.1

Basepair signature:
cWW-F-F-F-F-F

0.21 -4443.71 8 6

79

Motif group HL_97917.2

Basepair signature:
cWW-F-F-F-F

0.21 -4655.61 5 3

80

Motif group HL_27670.2

Basepair signature:
cWW-tWH-F-F

0.21 -4671.65 5 4

T-loop with unstacked turn

81

Motif group HL_89199.2

Basepair signature:
cWW-F-F-F

0.21 -4748.21 5 4

Mini UNCG

82

Motif group HL_00914.1

Basepair signature:
cWW-F-F-F-F

0.21 -5227.62 5 3

83

Motif group HL_55305.1

Basepair signature:
cWW-F-F-F-F-F

0.21 -5250.95 9 7

84

Motif group HL_01255.1

Basepair signature:
F-F-F-F-F-F-F-F

0.21 -5264.82 8 7

85

Motif group HL_60914.1

Basepair signature:
cWW-F

0.21 -5335.09 5 5

86

Motif group HL_55436.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F

0.21 -5345.31 7 5

87

Motif group HL_26631.1

Basepair signature:
cWW-F-F-F

0.21 -5606.21 4 4

88

Motif group HL_09452.1

Basepair signature:
cWW-F-F-F

0.21 -7240.19 7 5

89

Motif group HL_59735.5

Basepair signature:
cWW-F-F-F-F-F

0.21 -7433.53 4 3

90

Motif group HL_14757.1

Basepair signature:
cWW-cWW-F-F-tSW-tWW-cWW-tHW-tSW-F-cWH-F

0.00 -413.37 14 12

91

Motif group HL_74055.2

Basepair signature:
cWW-tWH-cWH-tSH-tHW-tHW-tSW

0.00 -424.36 11 9

92

Motif group HL_41902.1

Basepair signature:
cWW-cWW-cWH-F-F-F-F-F

0.00 -456.67 9 7

93

Motif group HL_07583.1

Basepair signature:
cWW-cWW-F-F-F-F-F-F-F-F

0.00 -472.46 10 8

94

Motif group HL_73247.1

Basepair signature:
cWW-F-tWH-F-F-F-F-F-F-F-F-F-F

0.00 -487.46 11 9

Pseudoknot geometry

95

Motif group HL_84847.1

Basepair signature:
cWW-F-F-F-F-tWW-F-F-F-F-F-F

0.00 -489.93 11 9

96

Motif group HL_91641.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F-cSW-F-F-F-F

0.00 -498.43 13 11

97

Motif group HL_98870.1

Basepair signature:
cWW-tSH-tWW-F-F-F-F-F

0.00 -505.13 11 10

98

Motif group HL_70658.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F-F

0.00 -510.53 9 7

99

Motif group HL_41543.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F

0.00 -771.10 10 8

100

Motif group HL_92488.1

Basepair signature:
cWW-cWW-F-cSS-F-F-F-F-F-F

0.00 -778.66 12 11

101

Motif group HL_74379.3

Basepair signature:
cWW-F-F-cSS-cSS-F-F-F

0.00 -781.08 9 7

102

Motif group HL_93438.2

Basepair signature:
cWW-F-F-F-F-F-F-F-F

0.00 -887.20 6 5

103

Motif group HL_67079.1

Basepair signature:
cWW-F-F-F-F-F-F-F

0.00 -902.75 8 6

104

Motif group HL_51921.1

Basepair signature:
cWW-tSH-tSS-tHS-F-F-F-F-F-F-F-F-F-F-F

0.00 -914.67 16 14

105

Motif group HL_60266.1

Basepair signature:
cWW-cWW-tWH-F-F-F-F

0.00 -919.65 8 6

106

Motif group HL_86109.1

Basepair signature:
cWW-F-tWH-F-F-F-F-F-F-F

0.00 -1072.42 9 8

107

Motif group HL_90620.1

Basepair signature:
cWW-F-F-F-F-cSW-cSH-F

0.00 -1228.62 8 6

108

Motif group HL_68257.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F

0.00 -1265.15 7 6

109

Motif group HL_68767.1

Basepair signature:
cWW-cWS-tSH-cWS-F

0.00 -1332.58 9 7

tRNA D-loop

110

Motif group HL_13971.1

Basepair signature:
cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F

0.00 -1364.04 11 10

111

Motif group HL_02581.1

Basepair signature:
cWW-tSH-cWS-tSW-F-F-F

0.00 -1380.52 11 10

tRNA D-loop

112

Motif group HL_36335.1

Basepair signature:
cWW-F-F-cSS-cSS-F

0.00 -1451.37 7 5

113

Motif group HL_02887.3

Basepair signature:
cWW-tWH-F-F-F-F-F-F

0.00 -1451.87 8 6

T-loop with 3 stacked bulged bases

114

Motif group HL_91939.2

Basepair signature:
cWW-tSH-tHH-tWW-F-F-F

0.00 -1522.98 8 6

115

Motif group HL_40252.4

Basepair signature:
cWW-tSH-cWS-F

0.00 -1552.30 8 6

116

Motif group HL_81545.2

Basepair signature:
cWW-tWH-F-F-F-F

0.00 -1557.64 6 5

117

Motif group HL_53504.3

Basepair signature:
cWW-tSH-F-F-F-F-F-F

0.00 -1571.82 7 5

118

Motif group HL_86012.1

Basepair signature:
cWW-tWH-F-F-F-F

0.00 -1621.93 7 6

T-loop with unstacked turn

119

Motif group HL_23509.1

Basepair signature:
cSH-F-F-F-F-F-F-F-F-F

0.00 -1660.79 9 8

120

Motif group HL_50860.2

Basepair signature:
cWW-F-cWH-F-F-F-F

0.00 -1724.14 6 4

121

Motif group HL_49941.1

Basepair signature:
cWW-F-F-F-F-F

0.00 -1756.95 9 7

tRNA D-loop

122

Motif group HL_83808.4

Basepair signature:
cWW-tWW-F-F-F

0.00 -1768.76 9 7

Pseudoknot

123

Motif group HL_18423.1

Basepair signature:
cWW-tSH-tHS-F

0.00 -1778.70 7 6

124

Motif group HL_61996.2

Basepair signature:
cWW-tWH-F-F-F

0.00 -1904.55 6 4

125

Motif group HL_26934.1

Basepair signature:
cWW-F-F-F-F-F-F

0.00 -1916.20 7 5

126

Motif group HL_20743.5

Basepair signature:
cWW-cWW-F-F-F-F

0.00 -1960.84 6 4

127

Motif group HL_05304.3

Basepair signature:
cWW-cWW-F-F-tSH-F-F-F-F-F

0.00 -1978.39 9 7

128

Motif group HL_28252.8

Basepair signature:
cWW-tWH-F-F-F-F-F

0.00 -2035.31 5 4

T-loop with 2 stacked bulged bases

129

Motif group HL_97756.2

Basepair signature:
cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F

0.00 -2076.36 11 10

130

Motif group HL_73266.9

Basepair signature:
cWW-F-F-cSW-cSH-F

0.00 -2091.54 6 4

131

Motif group HL_16991.1

Basepair signature:
cWW-cWH-cWH-F-cWH-F

0.00 -2100.85 9 8

G-quadruplex fragment

132

Motif group HL_06226.4

Basepair signature:
cWW-F-F-F-F-F-F-F

0.00 -2226.65 7 6

133

Motif group HL_04171.7

Basepair signature:
cWW-cWW-F-F-F-F-F-F

0.00 -2227.69 8 6

134

Motif group HL_25847.2

Basepair signature:
cWW-F-cSH-tHW-F-F-F

0.00 -2248.86 7 6

135

Motif group HL_04642.1

Basepair signature:
cWW-F-F-F-F-F

0.00 -2368.35 8 6

tRNA D-loop

136

Motif group HL_57863.1

Basepair signature:
cWW-F-F-cWH-cWH-F

0.00 -2375.25 7 5

G-quadruplex fragment

137

Motif group HL_18978.1

Basepair signature:
cWW-F-F-tHW-F-F-F

0.00 -2387.90 9 7

138

Motif group HL_66853.7

Basepair signature:
cWW-cWS-F-cSH

0.00 -2461.84 6 5

139

Motif group HL_98252.1

Basepair signature:
cWW-tWW-F-F-F-F

0.00 -2490.58 9 7

140

Motif group HL_07480.2

Basepair signature:
cWW-tSH-F-F-F

0.00 -2591.00 8 7

141

Motif group HL_02483.1

Basepair signature:
cWW-tWH-F-cSH-F-F-F

0.00 -2651.64 8 7

142

Motif group HL_89567.2

Basepair signature:
cWW-F-F-F

0.00 -2734.57 5 3

143

Motif group HL_13529.1

Basepair signature:
cWW-F-F-F-F

0.00 -2752.18 5 3

144

Motif group HL_45785.1

Basepair signature:
cWW-F-F-F-F-cSH-F-F

0.00 -2787.76 10 8

145

Motif group HL_89346.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F

0.00 -2797.63 15 13

146

Motif group HL_89881.5

Basepair signature:
cWW-tHW-F-F-F-F-F-F

0.00 -2803.63 8 7

147

Motif group HL_10456.1

Basepair signature:
cWW-F-cWW-tWW-F-tHW-F-F-F-F-F-F-F

0.00 -2829.60 14 12

148

Motif group HL_45175.1

Basepair signature:
cWW-cWS-F-F

0.00 -2867.12 7 5

tRNA D-loop

149

Motif group HL_59564.1

Basepair signature:
cWW-F-cSS-F-cSS-F-F-F-F-F-F-F-F-F-F-F-F

0.00 -2942.25 16 15

150

Motif group HL_00317.1

Basepair signature:
cWW-F-cSS-F-F-F-F-F-F-F-F-F-F-F-F-F-F

0.00 -2944.95 16 15

151

Motif group HL_22584.6

Basepair signature:
cWW-tSW-F

0.00 -2973.38 4 2

Fab BL3-6 binding hairpin with tSW

152

Motif group HL_84299.4

Basepair signature:
cWW-F-F-F-F-F-F

0.00 -3007.54 5 4

153

Motif group HL_60293.1

Basepair signature:
cWW-cWH-F-cWH-cHW-cHW-cWH-cHW-cWH-F-cWH-cWH-cWH-F

0.00 -3014.12 18 16

G-quadruplex

154

Motif group HL_21400.1

Basepair signature:
cWW-tWH-tSW-cWW-cWH-cHW-cWH-cWH-cHW-cWH-cHW-cWH-cWH-cWH-cWH-cWH

0.00 -3031.72 19 17

G-quadruplex

155

Motif group HL_12758.3

Basepair signature:
cWW-tSH-F-cHW-F-F-cWH-cHW-cWH-cHW-cWH-cWH-F-tSH-F-cHW-F-cWH-cWH

0.00 -3050.77 20 18

G-quadruplex

156

Motif group HL_35354.1

Basepair signature:
cWW-cWH-cHW-F-cWH-cHW-F-F-tHH-cWH-tWW-cWH-F-tWW-cWH-F-cWH

0.00 -3089.71 19 17

157

Motif group HL_78347.4

Basepair signature:
cWW-F-F-F-F

0.00 -3097.91 5 4

158

Motif group HL_87463.1

Basepair signature:
cWW-cWW-F-F-F-F-F

0.00 -3104.31 8 6

159

Motif group HL_04259.3

Basepair signature:
cWW-F-F-F-F-F-F

0.00 -3132.12 5 3

GNRA with extra cWW

160

Motif group HL_34964.1

Basepair signature:
cWW-F-F-F-F-F

0.00 -3177.06 8 7

161

Motif group HL_20811.4

Basepair signature:
cWW-cWS-F

0.00 -3221.85 4 3

tRNA D-loop

162

Motif group HL_64690.6

Basepair signature:
cWW-cSW-F-F-F-F

0.00 -3234.47 5 4

163

Motif group HL_23010.1

Basepair signature:
cWW-F-F-F-F-F-F

0.00 -3300.87 8 6

164

Motif group HL_53454.2

Basepair signature:
cWW-tSH-F-F-F-F-F

0.00 -3349.66 6 5

165

Motif group HL_73916.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F

0.00 -3405.98 35 33

166

Motif group HL_58224.1

Basepair signature:
cWW-F-F-F-F-F

0.00 -3416.85 8 6

167

Motif group HL_93616.2

Basepair signature:
cWW-cWS-F-F-F-F

0.00 -3479.13 8 7

tRNA D-loop

168

Motif group HL_85461.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F-F-F-F-F-F

0.00 -3499.96 15 14

169

Motif group HL_99748.1

Basepair signature:
cWW-F-F-cSH

0.00 -3535.97 6 4

Other HL

170

Motif group HL_73183.1

Basepair signature:
cWW-tSH-tHW-F-F-F-F-F-F-F-F-F

0.00 -3550.27 11 10

Pseudoknot geometry with G-bulge

171

Motif group HL_04641.1

Basepair signature:
cWW-F-F-F-F-F

0.00 -3551.39 7 5

172

Motif group HL_85434.1

Basepair signature:
cWW-cWW-F-F-F-F-F-F

0.00 -3563.43 8 6

173

Motif group HL_99324.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F

0.00 -3577.14 13 11

174

Motif group HL_66482.1

Basepair signature:
cWW-cWW-tWW-F-F-tWH-F-F-F-F-F-F-F-F

0.00 -3623.04 14 12

175

Motif group HL_93383.1

Basepair signature:
cWW-cSH-F-F-F-F-F-F

0.00 -3625.41 6 4

176

Motif group HL_77082.1

Basepair signature:
cWW-F-F-F-F-F-F

0.00 -3643.28 5 3

Pseudoknot geometry

177

Motif group HL_37369.2

Basepair signature:
cWW-tSH-F-F-F

0.00 -3651.94 5 3

178

Motif group HL_89893.1

Basepair signature:
cWW-F-F-F-F

0.00 -3682.74 5 4

179

Motif group HL_47854.1

Basepair signature:
cWW-F-F-F-F

0.00 -3718.16 5 4

180

Motif group HL_33074.4

Basepair signature:
cWW-F-F-F-F-F-F-F-F

0.00 -3721.55 10 8

U1 small nuclear ribonucleoprotein A binding hairpin

181

Motif group HL_21372.1

Basepair signature:
cWW-F-cSH-F-F

0.00 -3839.03 6 5

182

Motif group HL_80599.2

Basepair signature:
cWW-F-F-F-F-F-F-F

0.00 -3853.75 7 5

183

Motif group HL_50537.6

Basepair signature:
cWW-F-F-F

0.00 -3877.97 6 4

tRNA anticodon loop with synthetase

184

Motif group HL_88364.2

Basepair signature:
cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

0.00 -3915.40 13 12

185

Motif group HL_81538.2

Basepair signature:
cWW-tSH-F-F-F-F

0.00 -3950.19 5 3

GNRA with tandem sheared

186

Motif group HL_11542.1

Basepair signature:
cWW-tSH-F-F-F-F-F-F

0.00 -3967.34 10 8

187

Motif group HL_33983.1

Basepair signature:
cWW-F-F-F-F-F

0.00 -4029.67 6 4

188

Motif group HL_07903.1

Basepair signature:
cWW-cWW-F-F-F-F-F-F-F-F-F

0.00 -4051.66 11 10

189

Motif group HL_32735.2

Basepair signature:
cWW-tSH-F-F-F-F-F

0.00 -4102.51 6 4

190

Motif group HL_20751.2

Basepair signature:
cWW-tHW-F-F-F-F-F-F-F-F-F

0.00 -4103.42 10 9

191

Motif group HL_24792.1

Basepair signature:
cWW-cWS-F-F-F

0.00 -4151.78 8 7

192

Motif group HL_29129.3

Basepair signature:
cWW-tWH-F-F-F-F

0.00 -4180.60 8 6

193

Motif group HL_50851.1

Basepair signature:
cWW-cWH-cWH-cWH-cWH-F

0.00 -4210.66 10 9

G-quadruplex fragment

194

Motif group HL_99769.3

Basepair signature:
cWW-cWW-F-F-F-F

0.00 -4222.76 8 7

195

Motif group HL_06059.6

Basepair signature:
cWW-F-F-F-F-F-F-F

0.00 -4274.84 5 4

tRNA anticodon loop

196

Motif group HL_63355.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F-F-F-F

0.00 -4458.11 10 9

197

Motif group HL_04725.1

Basepair signature:
cWW-cWS-cWW-cWW-cWS

0.00 -4520.37 9 8

198

Motif group HL_31581.6

Basepair signature:
cWW-cHS-F-F-F-cWW-F-F-F

0.00 -4596.33 10 8

199

Motif group HL_30068.2

Basepair signature:
cWW-F-F-F-F

0.00 -4630.66 4 3

200

Motif group HL_64292.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F

0.00 -4663.71 13 11

201

Motif group HL_16398.2

Basepair signature:
cWW-F-F-F-F-F-F

0.00 -4879.36 10 8

202

Motif group HL_67407.5

Basepair signature:
cWW-F-F-F-F-F-F-F-F

0.00 -4892.08 8 6

203

Motif group HL_81312.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F-F

0.00 -4972.55 9 7

204

Motif group HL_02817.2

Basepair signature:
cWW-F-F-F-F

0.00 -4978.99 5 3

205

Motif group HL_38649.1

Basepair signature:
cWW-tSH-F-F-F-F-F-F

0.00 -4989.36 8 6

206

Motif group HL_50779.4

Basepair signature:
cWW-F-F-F-F-F-F-F

0.00 -5029.00 7 5

207

Motif group HL_23115.1

Basepair signature:
cWW-F-F-F-F-F

0.00 -5054.36 9 7

tRNA D-loop

208

Motif group HL_15118.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F-F

0.00 -5054.74 10 8

209

Motif group HL_88558.1

Basepair signature:
cWW-tSH-F-F-F-F-F-F-F

0.00 -5075.79 9 7

210

Motif group HL_08510.1

Basepair signature:
cWW-F-F-cSH-F-F

0.00 -5107.50 8 7

211

Motif group HL_94376.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F-F

0.00 -5125.03 8 6

Pseudoknot geometry

212

Motif group HL_19210.3

Basepair signature:
cWW-F-F-F-F-F-F-F-F

0.00 -5146.41 7 5

213

Motif group HL_97733.1

Basepair signature:
cWW-F-F-F-cSH-F

0.00 -5168.41 9 7

214

Motif group HL_80008.1

Basepair signature:
cWW-F-F-F-cSH-F

0.00 -5182.13 6 4

215

Motif group HL_72628.1

Basepair signature:
cWW-tSH-F-F-F-F

0.00 -5211.12 6 4

216

Motif group HL_91503.7

Basepair signature:
cWW-F-F-F-F-F-F-F

0.00 -5236.16 8 6

217

Motif group HL_78284.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F-F-F

0.00 -5245.76 8 7

218

Motif group HL_12870.1

Basepair signature:
cWW-tHW-F-F-F-F-F-F-F-F-F

0.00 -5269.01 10 8

219

Motif group HL_80411.1

Basepair signature:
cWW-F-cSH-F-F-F-F

0.00 -5314.95 9 7

tRNA D-loop

220

Motif group HL_29762.1

Basepair signature:
cWW-F-F-F-F-F

0.00 -5372.11 8 6

221

Motif group HL_86883.1

Basepair signature:
cWW-F-F-F

0.00 -5407.46 5 4

222

Motif group HL_70751.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F-F

0.00 -5412.84 8 6

223

Motif group HL_36684.4

Basepair signature:
cWW-F-F-F-F-F-F-F-F-F

0.00 -5566.50 8 6

224

Motif group HL_68572.1

Basepair signature:
cWW-F-F-F-F-F-F-F

0.00 -5607.75 10 8

225

Motif group HL_93135.1

Basepair signature:
cWW-F-F-F-F-F-F

0.00 -5640.52 9 7

Pseudoknot

226

Motif group HL_85993.1

Basepair signature:
cWW-F-F-F-F-F

0.00 -5656.47 6 4

227

Motif group HL_47732.1

Basepair signature:
cWW-F-F-F-F-F-F

0.00 -5662.87 9 7

228

Motif group HL_50418.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F-F

0.00 -5683.77 7 6

229

Motif group HL_51447.1

Basepair signature:
cWW-F-F-F-F-F

0.00 -5755.67 6 4

230

Motif group HL_38046.1

Basepair signature:
cWW-F-F-F-F-F-F

0.00 -5758.98 6 5

231

Motif group HL_74292.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F

0.00 -5823.06 7 5

232

Motif group HL_69139.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F

0.00 -5827.38 8 7

233

Motif group HL_85367.2

Basepair signature:
cWW-F-F-F-F-F-F

0.00 -5846.14 6 4

234

Motif group HL_29958.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F

0.00 -5999.69 11 10

235

Motif group HL_83632.1

Basepair signature:
cWW-F-F-F-F-F-F

0.00 -6027.16 6 4

tRNA anticodon loop

236

Motif group HL_80362.1

Basepair signature:
cWW-F-F-F

0.00 -6031.86 7 5

237

Motif group HL_35677.3

Basepair signature:
cWW-F-F-F-F-F-F-F

0.00 -6097.36 7 5

238

Motif group HL_31585.4

Basepair signature:
cWW-F-F-F-F-F

0.00 -6139.82 4 3

Purine riboswitch

239

Motif group HL_15574.1

Basepair signature:
cWW-F-F-F-F-F

0.00 -6163.43 4 3

240

Motif group HL_99867.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F

0.00 -6473.08 6 5

241

Motif group HL_38808.1

Basepair signature:
cWW-cWW

0.00 -6566.50 6 5

242

Motif group HL_77600.2

Basepair signature:
cWW-F-F-F-F-F

0.00 -6884.40 5 4

243

Motif group HL_22622.1

Basepair signature:
cWW-F-F-F-F-F

0.00 -6973.23 6 4

244

Motif group HL_20781.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F

0.00 -6994.47 8 6

245

Motif group HL_42998.2

Basepair signature:
cWW-F-F-F-F-F-F

0.00 -6998.21 5 3

246

Motif group HL_80241.1

Basepair signature:
cWW-F-F-F-F-F-F-F

0.00 -7327.88 6 4

247

Motif group HL_58539.1

Basepair signature:
cWW-tWS-F-tHW-F-F-F-F-F-F-F-F

0.00 -8107.82 13 11

248

Motif group HL_97983.1

Basepair signature:
cWW-F-F

0.00 -8205.26 7 6

249

Motif group HL_67667.2

Basepair signature:
cWW-F-F

0.00 -8245.97 6 5

250

Motif group HL_78197.1

Basepair signature:
cWW-F-F-F-F-F-F

0.00 -8479.06 6 4

251

Motif group HL_93324.4

Basepair signature:
cWW-F-F-F-F-F-F

0.00 -8863.68 5 3

Pseudoknot geometry

252

Motif group HL_07951.3

Basepair signature:
cWW-F-F

0.00 -9999.00 6 5

tRNA D-loop

253

Motif group HL_09260.2

Basepair signature:
cWW-F-F-F-F

0.00 -9999.00 9 7

tRNA D-loop

Coloring options: