JAR3D
Query RF03081-3.98 completed
Run on Motif Atlas Version
using the Rfam secondary structure. Run with the CaCoFold secondary structure.
Loop 2 Hairpin loop
Column numbers: 41-54
Scored sequences and counts
CGGAACCCGAACAG 3
CGGAACC-GAAAAG 3
CGAAGCC-GAAAAG 2
CGACACC-GAAAAG 2
CGAGUUC-GAAAAG 2
CGCAACU-GAAAAG 2
CGUAACC-GAAAAG 2
CGUCACC-GAAAAG 2
AGUAUUCUGAAAAU 1
AUAAAUCCGAAAAU 1
CGAAAACUGAAAAG 1
CGAAAUCCGAAAAG 1
CGAAUUCCGAAAAG 1
CGCAAUCCGAAAAG 1
CGGAAACCGAAAAG 1
CGGAACCUGAAAAG 1
CGGAUUCUGAAAAU 1
CGUAUUCCGAAAAG 1
CGUAUUCUGAAAAG 1
CGUGACCCGAAAAG 1
UGUAUUCCGAAAGA 1
AGUUUCC-GAAAAU 1
CACCACC-GAAAAG 1
CAGAACC-GAAAAG 1
CGAUACA-AAAAAG 1
CGAUACC-GAAAAG 1
CGAUACU-GAAAAG 1
CGGAUCC-GAAAAG 1
CGUUACU-GCGAAG 1
CGUUUCU-GAAAAG 1
UAUAACU-AAAAAA 1
UGACACU-GAAAUG 1
AGAAACC-GAA-AG 1
CGACACC--AAAAG 1
CGGG-CC-GAAAAG 1
UGAAACC-GAA-AA 1
Click on headings to reorder table
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group HL_88558.1
Basepair signature:
|
13.04 | -35.07 | 5 | 4 |
|
| 2 |
Motif group HL_86109.1
Basepair signature:
|
6.52 | -32.18 | 6 | 5 |
|
| 3 |
Motif group HL_11542.1
Basepair signature:
|
6.52 | -42.08 | 6 | 6 |
|
| 4 |
Motif group HL_02483.1
Basepair signature:
|
6.52 | -42.90 | 6 | 5 |
|
| 5 |
Motif group HL_38649.1
Basepair signature:
|
6.52 | -58.49 | 6 | 5 |
|
| 6 |
Motif group HL_68257.1
Basepair signature:
|
2.17 | -53.04 | 6 | 5 |
|
| 7 |
Motif group HL_70658.1
Basepair signature:
|
2.17 | -58.00 | 8 | 6 |
|
| 8 |
Motif group HL_69139.1
Basepair signature:
|
2.17 | -66.93 | 7 | 5 |
|
| 9 |
Motif group HL_60266.1
Basepair signature:
|
2.17 | -69.13 | 7 | 5 |
|
| 10 |
Motif group HL_68572.1
Basepair signature:
|
0.00 | -43.95 | 6 | 6 |
|
| 11 |
Motif group HL_68767.1
Basepair signature:
|
0.00 | -48.06 | 6 | 5 |
tRNA D-loop |
| 12 |
Motif group HL_98870.1
Basepair signature:
|
0.00 | -52.73 | 6 | 5.5 |
|
| 13 |
Motif group HL_01255.1
Basepair signature:
|
0.00 | -55.71 | 5 | 5 |
|
| 14 |
Motif group HL_91939.2
Basepair signature:
|
0.00 | -56.81 | 6 | 5 |
|
| 15 |
Motif group HL_05304.3
Basepair signature:
|
0.00 | -62.68 | 8 | 6 |
|
| 16 |
Motif group HL_08602.1
Basepair signature:
|
0.00 | -70.36 | 7 | 7 |
|
| 17 |
Motif group HL_07583.1
Basepair signature:
|
0.00 | -73.52 | 8 | 7 |
|
| 18 |
Motif group HL_02581.1
Basepair signature:
|
0.00 | -74.00 | 6 | 6 |
tRNA D-loop |
| 19 |
Motif group HL_16398.2
Basepair signature:
|
0.00 | -74.49 | 9 | 7 |
|
| 20 |
Motif group HL_20751.2
Basepair signature:
|
0.00 | -84.75 | 8 | 8 |
|
| 21 |
Motif group HL_73183.1
Basepair signature:
|
0.00 | -86.18 | 8 | 6 |
Pseudoknot geometry with G-bulge |
| 22 |
Motif group HL_78284.1
Basepair signature:
|
0.00 | -87.05 | 8 | 7 |
|
| 23 |
Motif group HL_31581.6
Basepair signature:
|
0.00 | -88.18 | 8 | 7 |
|
| 24 |
Motif group HL_94376.1
Basepair signature:
|
0.00 | -91.34 | 7 | 6 |
Pseudoknot geometry |
| 25 |
Motif group HL_90620.1
Basepair signature:
|
0.00 | -92.55 | 6 | 5 |
|
| 26 |
Motif group HL_23010.1
Basepair signature:
|
0.00 | -95.10 | 6 | 6 |
|
| 27 |
Motif group HL_40252.4
Basepair signature:
|
0.00 | -96.48 | 6 | 6 |
|
| 28 |
Motif group HL_80411.1
Basepair signature:
|
0.00 | -99.03 | 7 | 6.5 |
tRNA D-loop |
| 29 |
Motif group HL_16991.1
Basepair signature:
|
0.00 | -100.47 | 9 | 8 |
G-quadruplex fragment |
| 30 |
Motif group HL_18423.1
Basepair signature:
|
0.00 | -101.57 | 7 | 6 |
|
| 31 |
Motif group HL_91641.1
Basepair signature:
|
0.00 | -101.74 | 9 | 8 |
|
| 32 |
Motif group HL_67079.1
Basepair signature:
|
0.00 | -103.07 | 7 | 6 |
|
| 33 |
Motif group HL_81312.1
Basepair signature:
|
0.00 | -104.34 | 7 | 7 |
|
| 34 |
Motif group HL_99769.3
Basepair signature:
|
0.00 | -105.16 | 8 | 7 |
|
| 35 |
Motif group HL_01962.2
Basepair signature:
|
0.00 | -106.56 | 6 | 4 |
|
| 36 |
Motif group HL_53504.3
Basepair signature:
|
0.00 | -108.22 | 5 | 5 |
|
| 37 |
Motif group HL_70751.1
Basepair signature:
|
0.00 | -108.86 | 6 | 6 |
|
| 38 |
Motif group HL_67407.5
Basepair signature:
|
0.00 | -108.98 | 7 | 6 |
|
| 39 |
Motif group HL_29958.1
Basepair signature:
|
0.00 | -109.00 | 10 | 8 |
|
| 40 |
Motif group HL_47732.1
Basepair signature:
|
0.00 | -109.19 | 6 | 6 |
|
| 41 |
Motif group HL_74055.2
Basepair signature:
|
0.00 | -109.88 | 7 | 7 |
|
| 42 |
Motif group HL_07903.1
Basepair signature:
|
0.00 | -110.59 | 10 | 9 |
|
| 43 |
Motif group HL_74379.3
Basepair signature:
|
0.00 | -112.04 | 8 | 7 |
|
| 44 |
Motif group HL_84847.1
Basepair signature:
|
0.00 | -112.21 | 10 | 8 |
|
| 45 |
Motif group HL_53454.2
Basepair signature:
|
0.00 | -112.98 | 6 | 5 |
|
| 46 |
Motif group HL_06226.4
Basepair signature:
|
0.00 | -113.14 | 7 | 6 |
|
| 47 |
Motif group HL_91503.7
Basepair signature:
|
0.00 | -114.18 | 7 | 6 |
|
| 48 |
Motif group HL_63355.1
Basepair signature:
|
0.00 | -115.64 | 9 | 9 |
|
| 49 |
Motif group HL_50851.1
Basepair signature:
|
0.00 | -115.84 | 9 | 9 |
G-quadruplex fragment |
| 50 |
Motif group HL_41543.1
Basepair signature:
|
0.00 | -116.08 | 9 | 7 |
|
| 51 |
Motif group HL_15118.1
Basepair signature:
|
0.00 | -118.85 | 9 | 9 |
|
| 52 |
Motif group HL_41902.1
Basepair signature:
|
0.00 | -118.88 | 9 | 8 |
|
| 53 |
Motif group HL_09260.2
Basepair signature:
|
0.00 | -121.27 | 7 | 7 |
tRNA D-loop |
| 54 |
Motif group HL_81205.3
Basepair signature:
|
0.00 | -123.23 | 9 | 9 |
|
| 55 |
Motif group HL_55305.1
Basepair signature:
|
0.00 | -123.59 | 9 | 8 |
|
| 56 |
Motif group HL_29762.1
Basepair signature:
|
0.00 | -124.45 | 8 | 7 |
|
| 57 |
Motif group HL_23115.1
Basepair signature:
|
0.00 | -125.39 | 8 | 8 |
tRNA D-loop |
| 58 |
Motif group HL_04725.1
Basepair signature:
|
0.00 | -126.13 | 9 | 8 |
|
| 59 |
Motif group HL_93616.2
Basepair signature:
|
0.00 | -126.17 | 6 | 6 |
tRNA D-loop |
| 60 |
Motif group HL_64292.1
Basepair signature:
|
0.00 | -126.26 | 8 | 8 |
|
| 61 |
Motif group HL_85434.1
Basepair signature:
|
0.00 | -126.28 | 8 | 6 |
|
| 62 |
Motif group HL_45785.1
Basepair signature:
|
0.00 | -127.96 | 9 | 7 |
|
| 63 |
Motif group HL_73247.1
Basepair signature:
|
0.00 | -128.46 | 8 | 8 |
Pseudoknot geometry |
| 64 |
Motif group HL_50418.1
Basepair signature:
|
0.00 | -130.91 | 7 | 7 |
|
| 65 |
Motif group HL_89346.1
Basepair signature:
|
0.00 | -132.43 | 10 | 10 |
|
| 66 |
Motif group HL_58224.1
Basepair signature:
|
0.00 | -133.75 | 7 | 7 |
|
| 67 |
Motif group HL_36684.4
Basepair signature:
|
0.00 | -134.88 | 7 | 5 |
|
| 68 |
Motif group HL_93135.1
Basepair signature:
|
0.00 | -136.05 | 8 | 7 |
Pseudoknot |
| 69 |
Motif group HL_18978.1
Basepair signature:
|
0.00 | -136.26 | 7 | 7 |
|
| 70 |
Motif group HL_50779.4
Basepair signature:
|
0.00 | -139.40 | 7 | 6 |
|
| 71 |
Motif group HL_23509.1
Basepair signature:
|
0.00 | -139.74 | 9.5 | 8 |
|
| 72 |
Motif group HL_07480.2
Basepair signature:
|
0.00 | -142.66 | 8 | 7 |
|
| 73 |
Motif group HL_04642.1
Basepair signature:
|
0.00 | -145.39 | 7 | 7 |
tRNA D-loop |
| 74 |
Motif group HL_04641.1
Basepair signature:
|
0.00 | -145.70 | 7 | 7 |
|
| 75 |
Motif group HL_29129.3
Basepair signature:
|
0.00 | -147.88 | 7 | 6 |
|
| 76 |
Motif group HL_49941.1
Basepair signature:
|
0.00 | -147.89 | 7 | 7 |
tRNA D-loop |
| 77 |
Motif group HL_14757.1
Basepair signature:
|
0.00 | -151.24 | 9 | 9 |
|
| 78 |
Motif group HL_89881.5
Basepair signature:
|
0.00 | -153.65 | 9 | 8 |
|
| 79 |
Motif group HL_92488.1
Basepair signature:
|
0.00 | -154.09 | 8 | 8 |
|
| 80 |
Motif group HL_98252.1
Basepair signature:
|
0.00 | -154.85 | 10 | 8 |
|
| 81 |
Motif group HL_34964.1
Basepair signature:
|
0.00 | -157.64 | 8.5 | 7 |
|
| 82 |
Motif group HL_33074.4
Basepair signature:
|
0.00 | -158.03 | 9 | 9 |
U1 small nuclear ribonucleoprotein A binding hairpin |
| 83 |
Motif group HL_20781.1
Basepair signature:
|
0.00 | -161.86 | 6 | 6 |
|
| 84 |
Motif group HL_98864.1
Basepair signature:
|
0.00 | -166.08 | 8 | 7 |
T-loop with unstacked turn |
| 85 |
Motif group HL_93438.2
Basepair signature:
|
0.00 | -167.80 | 5 | 5 |
|
| 86 |
Motif group HL_97733.1
Basepair signature:
|
0.00 | -169.85 | 8 | 8 |
|
| 87 |
Motif group HL_55436.1
Basepair signature:
|
0.00 | -170.02 | 7 | 6 |
|
| 88 |
Motif group HL_74292.1
Basepair signature:
|
0.00 | -173.17 | 8 | 7 |
|
| 89 |
Motif group HL_02887.3
Basepair signature:
|
0.00 | -174.26 | 8 | 8 |
T-loop with 3 stacked bulged bases |
| 90 |
Motif group HL_36335.1
Basepair signature:
|
0.00 | -176.46 | 6 | 6 |
|
| 91 |
Motif group HL_25847.2
Basepair signature:
|
0.00 | -177.71 | 7 | 5 |
|
| 92 |
Motif group HL_75293.5
Basepair signature:
|
0.00 | -179.12 | 6 | 6 |
|
| 93 |
Motif group HL_66853.7
Basepair signature:
|
0.00 | -179.27 | 7 | 7 |
|
| 94 |
Motif group HL_88205.2
Basepair signature:
|
0.00 | -180.81 | 5 | 4 |
|
| 95 |
Motif group HL_87463.1
Basepair signature:
|
0.00 | -181.08 | 9 | 7 |
|
| 96 |
Motif group HL_19210.3
Basepair signature:
|
0.00 | -181.39 | 7 | 7 |
|
| 97 |
Motif group HL_57863.1
Basepair signature:
|
0.00 | -181.53 | 9 | 8 |
G-quadruplex fragment |
| 98 |
Motif group HL_12870.1
Basepair signature:
|
0.00 | -182.88 | 8 | 7 |
|
| 99 |
Motif group HL_59564.1
Basepair signature:
|
0.00 | -183.15 | 12.5 | 11 |
|
| 100 |
Motif group HL_13971.1
Basepair signature:
|
0.00 | -186.51 | 9 | 8 |
|
| 101 |
Motif group HL_25061.1
Basepair signature:
|
0.00 | -187.53 | 8 | 6.5 |
|
| 102 |
Motif group HL_88364.2
Basepair signature:
|
0.00 | -194.05 | 12 | 11 |
|
| 103 |
Motif group HL_33983.1
Basepair signature:
|
0.00 | -195.84 | 6 | 6 |
|
| 104 |
Motif group HL_10456.1
Basepair signature:
|
0.00 | -199.89 | 11 | 11 |
|
| 105 |
Motif group HL_73255.1
Basepair signature:
|
0.00 | -202.42 | 8 | 8 |
|
| 106 |
Motif group HL_15802.1
Basepair signature:
|
0.00 | -205.05 | 9 | 7 |
|
| 107 |
Motif group HL_83808.4
Basepair signature:
|
0.00 | -206.40 | 8 | 8 |
Pseudoknot |
| 108 |
Motif group HL_72628.1
Basepair signature:
|
0.00 | -206.46 | 5.5 | 5 |
|
| 109 |
Motif group HL_51921.1
Basepair signature:
|
0.00 | -208.89 | 13 | 11 |
|
| 110 |
Motif group HL_99867.1
Basepair signature:
|
0.00 | -211.53 | 7 | 6 |
|
| 111 |
Motif group HL_86012.1
Basepair signature:
|
0.00 | -211.86 | 9 | 8 |
T-loop with unstacked turn |
| 112 |
Motif group HL_35677.3
Basepair signature:
|
0.00 | -213.39 | 8 | 7 |
|
| 113 |
Motif group HL_50860.2
Basepair signature:
|
0.00 | -216.62 | 6 | 5 |
|
| 114 |
Motif group HL_07951.3
Basepair signature:
|
0.00 | -216.70 | 6 | 6 |
tRNA D-loop |
| 115 |
Motif group HL_61996.2
Basepair signature:
|
0.00 | -219.94 | 7 | 6 |
|
| 116 |
Motif group HL_24792.1
Basepair signature:
|
0.00 | -223.77 | 8 | 7 |
|
| 117 |
Motif group HL_18565.1
Basepair signature:
|
0.00 | -223.90 | 7 | 6 |
|
| 118 |
Motif group HL_80599.2
Basepair signature:
|
0.00 | -225.14 | 7 | 7 |
|
| 119 |
Motif group HL_41464.2
Basepair signature:
|
0.00 | -225.98 | 7 | 6 |
|
| 120 |
Motif group HL_64690.6
Basepair signature:
|
0.00 | -229.09 | 7 | 6 |
|
| 121 |
Motif group HL_81545.2
Basepair signature:
|
0.00 | -232.02 | 8.5 | 7 |
|
| 122 |
Motif group HL_38046.1
Basepair signature:
|
0.00 | -232.92 | 9 | 7 |
|
| 123 |
Motif group HL_86769.4
Basepair signature:
|
0.00 | -233.54 | 7 | 6 |
|
| 124 |
Motif group HL_32735.2
Basepair signature:
|
0.00 | -233.60 | 6 | 6 |
|
| 125 |
Motif group HL_20167.2
Basepair signature:
|
0.00 | -238.47 | 7 | 6 |
|
| 126 |
Motif group HL_80008.1
Basepair signature:
|
0.00 | -239.65 | 7 | 6 |
|
| 127 |
Motif group HL_45175.1
Basepair signature:
|
0.00 | -243.14 | 7 | 7 |
tRNA D-loop |
| 128 |
Motif group HL_73266.9
Basepair signature:
|
0.00 | -246.62 | 6 | 5 |
|
| 129 |
Motif group HL_83632.1
Basepair signature:
|
0.00 | -252.30 | 6 | 5 |
tRNA anticodon loop |
| 130 |
Motif group HL_04171.7
Basepair signature:
|
0.00 | -253.05 | 8 | 6 |
|
| 131 |
Motif group HL_38808.1
Basepair signature:
|
0.00 | -253.52 | 8 | 7 |
|
| 132 |
Motif group HL_85367.2
Basepair signature:
|
0.00 | -253.93 | 7 | 5.5 |
|
| 133 |
Motif group HL_84299.4
Basepair signature:
|
0.00 | -256.49 | 7 | 6 |
|
| 134 |
Motif group HL_06059.6
Basepair signature:
|
0.00 | -271.63 | 5 | 5 |
tRNA anticodon loop |
| 135 |
Motif group HL_97756.2
Basepair signature:
|
0.00 | -274.19 | 8 | 7 |
|
| 136 |
Motif group HL_20743.5
Basepair signature:
|
0.00 | -276.66 | 8 | 7 |
|
| 137 |
Motif group HL_21372.1
Basepair signature:
|
0.00 | -278.79 | 8 | 7 |
|
| 138 |
Motif group HL_26934.1
Basepair signature:
|
0.00 | -285.20 | 9 | 8 |
|
| 139 |
Motif group HL_28252.8
Basepair signature:
|
0.00 | -289.91 | 7 | 5 |
T-loop with 2 stacked bulged bases |
| 140 |
Motif group HL_81538.2
Basepair signature:
|
0.00 | -290.80 | 5 | 5 |
GNRA with tandem sheared |
| 141 |
Motif group HL_89567.2
Basepair signature:
|
0.00 | -292.92 | 6 | 6 |
|
| 142 |
Motif group HL_50537.6
Basepair signature:
|
0.00 | -297.89 | 8 | 7 |
tRNA anticodon loop with synthetase |
| 143 |
Motif group HL_66482.1
Basepair signature:
|
0.00 | -299.03 | 9 | 9 |
|
| 144 |
Motif group HL_10540.1
Basepair signature:
|
0.00 | -304.45 | 7 | 6 |
|
| 145 |
Motif group HL_77436.5
Basepair signature:
|
0.00 | -306.01 | 6 | 6 |
T-loop related |
| 146 |
Motif group HL_77082.1
Basepair signature:
|
0.00 | -309.03 | 5 | 5 |
Pseudoknot geometry |
| 147 |
Motif group HL_78197.1
Basepair signature:
|
0.00 | -310.62 | 5 | 5 |
|
| 148 |
Motif group HL_99748.1
Basepair signature:
|
0.00 | -323.80 | 8 | 8 |
Other HL |
| 149 |
Motif group HL_01609.3
Basepair signature:
|
0.00 | -327.72 | 7 | 6 |
T-loop with 2 bulged bases not stacked |
| 150 |
Motif group HL_13529.1
Basepair signature:
|
0.00 | -329.98 | 7 | 6 |
|
| 151 |
Motif group HL_87553.1
Basepair signature:
|
0.00 | -330.65 | 7 | 6 |
|
| 152 |
Motif group HL_47854.1
Basepair signature:
|
0.00 | -333.13 | 8 | 7 |
|
| 153 |
Motif group HL_78347.4
Basepair signature:
|
0.00 | -333.23 | 6 | 6 |
|
| 154 |
Motif group HL_77600.2
Basepair signature:
|
0.00 | -341.94 | 7 | 6 |
|
| 155 |
Motif group HL_10453.3
Basepair signature:
|
0.00 | -343.06 | 7.5 | 6 |
tRNA anticodon loop |
| 156 |
Motif group HL_20535.2
Basepair signature:
|
0.00 | -345.65 | 8 | 7 |
|
| 157 |
Motif group HL_00914.1
Basepair signature:
|
0.00 | -346.34 | 8 | 6 |
|
| 158 |
Motif group HL_27670.2
Basepair signature:
|
0.00 | -364.56 | 8 | 6 |
T-loop with unstacked turn |
| 159 |
Motif group HL_48417.5
Basepair signature:
|
0.00 | -367.49 | 7 | 7 |
|
| 160 |
Motif group HL_04783.2
Basepair signature:
|
0.00 | -367.61 | 7 | 5 |
|
| 161 |
Motif group HL_28075.1
Basepair signature:
|
0.00 | -367.62 | 6 | 6 |
|
| 162 |
Motif group HL_93324.4
Basepair signature:
|
0.00 | -369.09 | 6 | 6 |
Pseudoknot geometry |
| 163 |
Motif group HL_56131.2
Basepair signature:
|
0.00 | -370.02 | 7 | 6 |
|
| 164 |
Motif group HL_20811.4
Basepair signature:
|
0.00 | -370.76 | 6 | 6 |
tRNA D-loop |
| 165 |
Motif group HL_97917.2
Basepair signature:
|
0.00 | -373.68 | 8 | 7 |
|
| 166 |
Motif group HL_80922.2
Basepair signature:
|
0.00 | -384.98 | 7 | 7 |
|
| 167 |
Motif group HL_30680.3
Basepair signature:
|
0.00 | -389.70 | 7 | 6 |
Pseudoknot geometry |
| 168 |
Motif group HL_02817.2
Basepair signature:
|
0.00 | -393.18 | 7 | 7 |
|
| 169 |
Motif group HL_04259.3
Basepair signature:
|
0.00 | -415.49 | 7 | 6 |
GNRA with extra cWW |
| 170 |
Motif group HL_31585.4
Basepair signature:
|
0.00 | -416.89 | 6 | 5 |
Purine riboswitch |
| 171 |
Motif group HL_13963.3
Basepair signature:
|
0.00 | -417.02 | 8 | 7 |
|
| 172 |
Motif group HL_37369.2
Basepair signature:
|
0.00 | -429.02 | 7 | 7 |
|
| 173 |
Motif group HL_42046.2
Basepair signature:
|
0.00 | -429.06 | 8 | 7 |
|
| 174 |
Motif group HL_25967.2
Basepair signature:
|
0.00 | -429.61 | 8 | 8 |
|
| 175 |
Motif group HL_50006.2
Basepair signature:
|
0.00 | -436.51 | 7 | 7 |
|
| 176 |
Motif group HL_37344.1
Basepair signature:
|
0.00 | -445.54 | 8 | 8 |
|
| 177 |
Motif group HL_07886.3
Basepair signature:
|
0.00 | -470.82 | 6 | 6 |
|
| 178 |
Motif group HL_53890.2
Basepair signature:
|
0.00 | -485.80 | 7 | 6 |
|
| 179 |
Motif group HL_15574.1
Basepair signature:
|
0.00 | -493.53 | 8 | 7 |
|
| 180 |
Motif group HL_00317.1
Basepair signature:
|
0.00 | -503.02 | 12.5 | 11 |
|
| 181 |
Motif group HL_93535.1
Basepair signature:
|
0.00 | -504.37 | 7 | 6 |
|
| 182 |
Motif group HL_87954.2
Basepair signature:
|
0.00 | -525.01 | 7 | 6 |
|
| 183 |
Motif group HL_22584.6
Basepair signature:
|
0.00 | -531.98 | 7 | 7 |
Fab BL3-6 binding hairpin with tSW |
| 184 |
Motif group HL_62934.1
Basepair signature:
|
0.00 | -532.64 | 7 | 7 |
|
| 185 |
Motif group HL_30068.2
Basepair signature:
|
0.00 | -533.27 | 8 | 7 |
|
| 186 |
Motif group HL_86870.2
Basepair signature:
|
0.00 | -541.70 | 9 | 8 |
|
| 187 |
Motif group HL_47787.2
Basepair signature:
|
0.00 | -544.95 | 7 | 7 |
|
| 188 |
Motif group HL_59843.1
Basepair signature:
|
0.00 | -559.36 | 7 | 7 |
|
| 189 |
Motif group HL_08100.1
Basepair signature:
|
0.00 | -573.94 | 8 | 8 |
|
| 190 |
Motif group HL_27483.1
Basepair signature:
|
0.00 | -578.33 | 9 | 8 |
|
| 191 |
Motif group HL_49922.4
Basepair signature:
|
0.00 | -585.19 | 7 | 7 |
|
| 192 |
Motif group HL_37824.7
Basepair signature:
|
0.00 | -617.52 | 6 | 6 |
GNRA |
| 193 |
Motif group HL_71391.1
Basepair signature:
|
0.00 | -646.88 | 9 | 7 |
|
| 194 |
Motif group HL_34617.5
Basepair signature:
|
0.00 | -654.11 | 7 | 7 |
UNCG |
| 195 |
Motif group HL_56676.1
Basepair signature:
|
0.00 | -665.93 | 8.5 | 8 |
|
| 196 |
Motif group HL_58539.1
Basepair signature:
|
0.00 | -868.39 | 10.5 | 10 |
|
| 197 |
Motif group HL_99324.1
Basepair signature:
|
0.00 | -1820.42 | 11 | 10 |
|
| 198 |
Motif group HL_08510.1
Basepair signature:
|
0.00 | -2231.03 | 11 | 9 |
|
| 199 |
Motif group HL_80362.1
Basepair signature:
|
0.00 | -2648.06 | 8 | 7 |
|
| 200 |
Motif group HL_80241.1
Basepair signature:
|
0.00 | -2880.57 | 7 | 7 |
|
| 201 |
Motif group HL_89893.1
Basepair signature:
|
0.00 | -3124.14 | 8 | 8 |
|
| 202 |
Motif group HL_97983.1
Basepair signature:
|
0.00 | -3172.62 | 10 | 8 |
|
| 203 |
Motif group HL_22622.1
Basepair signature:
|
0.00 | -3204.62 | 7 | 7 |
|
| 204 |
Motif group HL_73916.1
Basepair signature:
|
0.00 | -3208.30 | 28 | 28 |
|
| 205 |
Motif group HL_09452.1
Basepair signature:
|
0.00 | -3251.10 | 9.5 | 8.5 |
|
| 206 |
Motif group HL_39243.1
Basepair signature:
|
0.00 | -3975.16 | 8 | 7 |
|
| 207 |
Motif group HL_85461.1
Basepair signature:
|
0.00 | -3980.24 | 13 | 11 |
|
| 208 |
Motif group HL_12758.3
Basepair signature:
|
0.00 | -3996.23 | 13 | 13 |
G-quadruplex |
| 209 |
Motif group HL_66103.1
Basepair signature:
|
0.00 | -3998.35 | 7 | 7 |
|
| 210 |
Motif group HL_35354.1
Basepair signature:
|
0.00 | -4020.53 | 16 | 14 |
|
| 211 |
Motif group HL_21400.1
Basepair signature:
|
0.00 | -4022.06 | 17 | 15 |
G-quadruplex |
| 212 |
Motif group HL_60293.1
Basepair signature:
|
0.00 | -4031.80 | 15 | 14 |
G-quadruplex |
| 213 |
Motif group HL_82710.2
Basepair signature:
|
0.00 | -4056.11 | 8 | 7 |
|
| 214 |
Motif group HL_13189.1
Basepair signature:
|
0.00 | -4058.62 | 9 | 8 |
|
| 215 |
Motif group HL_50318.1
Basepair signature:
|
0.00 | -4076.66 | 8 | 7 |
|
| 216 |
Motif group HL_57875.1
Basepair signature:
|
0.00 | -4098.80 | 8 | 7 |
|
| 217 |
Motif group HL_43517.1
Basepair signature:
|
0.00 | -4106.01 | 10 | 9 |
|
| 218 |
Motif group HL_59330.1
Basepair signature:
|
0.00 | -5851.36 | 9 | 8 |
|
| 219 |
Motif group HL_93383.1
Basepair signature:
|
0.00 | -5881.41 | 8 | 6 |
|
| 220 |
Motif group HL_42998.2
Basepair signature:
|
0.00 | -7307.28 | 7 | 5 |
|
| 221 |
Motif group HL_85993.1
Basepair signature:
|
0.00 | -7448.47 | 9 | 7 |
|
| 222 |
Motif group HL_51447.1
Basepair signature:
|
0.00 | -8199.20 | 8 | 8 |
|
| 223 |
Motif group HL_99040.1
Basepair signature:
|
0.00 | -8918.17 | 9 | 9 |
|
| 224 |
Motif group HL_89199.2
Basepair signature:
|
0.00 | -9420.32 | 9 | 9 |
Mini UNCG |
| 225 |
Motif group HL_67667.2
Basepair signature:
|
0.00 | -9543.62 | 9 | 9 |
|
| 226 |
Motif group HL_65794.5
Basepair signature:
|
0.00 | -9725.17 | 7 | 6.5 |
Pseudoknot geometry |
| 227 |
Motif group HL_38901.2
Basepair signature:
|
0.00 | -9751.69 | 8 | 7 |
tRNA D-loop |
| 228 |
Motif group HL_46501.1
Basepair signature:
|
0.00 | -9764.50 | 8 | 8 |
|
| 229 |
Motif group HL_32392.1
Basepair signature:
|
0.00 | -9818.21 | 9 | 9 |
|
| 230 |
Motif group HL_22135.1
Basepair signature:
|
0.00 | -9999.00 | 9 | 8 |
|
| 231 |
Motif group HL_26631.1
Basepair signature:
|
0.00 | -9999.00 | 9 | 9 |
|
| 232 |
Motif group HL_28791.1
Basepair signature:
|
0.00 | -9999.00 | 8 | 8 |
|
| 233 |
Motif group HL_29966.1
Basepair signature:
|
0.00 | -9999.00 | 10 | 9 |
|
| 234 |
Motif group HL_32346.4
Basepair signature:
|
0.00 | -9999.00 | 8 | 8 |
|
| 235 |
Motif group HL_35941.1
Basepair signature:
|
0.00 | -9999.00 | 9 | 9 |
|
| 236 |
Motif group HL_38168.1
Basepair signature:
|
0.00 | -9999.00 | 8 | 8 |
|
| 237 |
Motif group HL_48778.2
Basepair signature:
|
0.00 | -9999.00 | 8 | 8 |
Mini UNCG |
| 238 |
Motif group HL_52953.3
Basepair signature:
|
0.00 | -9999.00 | 8 | 7 |
|
| 239 |
Motif group HL_55195.3
Basepair signature:
|
0.00 | -9999.00 | 8 | 7 |
|
| 240 |
Motif group HL_56334.1
Basepair signature:
|
0.00 | -9999.00 | 8 | 7 |
Mini UNCG |
| 241 |
Motif group HL_57176.2
Basepair signature:
|
0.00 | -9999.00 | 8 | 7 |
Pseudoknot geometry with 3' bulge |
| 242 |
Motif group HL_59735.5
Basepair signature:
|
0.00 | -9999.00 | 8 | 7 |
|
| 243 |
Motif group HL_60914.1
Basepair signature:
|
0.00 | -9999.00 | 9.5 | 9 |
|
| 244 |
Motif group HL_65313.1
Basepair signature:
|
0.00 | -9999.00 | 10 | 10 |
|
| 245 |
Motif group HL_69752.2
Basepair signature:
|
0.00 | -9999.00 | 8 | 8 |
|
| 246 |
Motif group HL_70782.2
Basepair signature:
|
0.00 | -9999.00 | 8 | 8 |
|
| 247 |
Motif group HL_75660.5
Basepair signature:
|
0.00 | -9999.00 | 7 | 7 |
|
| 248 |
Motif group HL_76094.1
Basepair signature:
|
0.00 | -9999.00 | 9 | 9 |
|
| 249 |
Motif group HL_78677.1
Basepair signature:
|
0.00 | -9999.00 | 10 | 9 |
|
| 250 |
Motif group HL_80709.3
Basepair signature:
|
0.00 | -9999.00 | 8 | 7 |
|
| 251 |
Motif group HL_81100.2
Basepair signature:
|
0.00 | -9999.00 | 8 | 8 |
|
| 252 |
Motif group HL_86883.1
Basepair signature:
|
0.00 | -9999.00 | 10 | 9 |
|
| 253 |
Motif group HL_94980.1
Basepair signature:
|
0.00 | -9999.00 | 10.5 | 10 |
|