JAR3D
Query RF03087-CCF-3.98 completed
Run on Motif Atlas Version
using the Rfam secondary structure. Run with the CaCoFold secondary structure.
Rfam family RF03087 maps to these 30 chains: 9ISV|1|A, 9J3R|1|A, 9J3R|1|B, 9J3R|1|C, 9J3R|1|D, 9J3T|1|A, 9J3T|1|B, 9J3T|1|C, 9J3T|1|D, 9J3T|1|E, 9J3T|1|F, 9J3T|1|G, 9J3T|1|H, 9MM6|1|A, 9MM6|1|E, 9MM6|1|I, 9MM6|1|M, 9MM6|1|Q, 9MM6|1|U, 9MM6|1|Y, 9MM6|1|c, 9MME|1|U, 9MME|1|Y, 9MME|1|c, 9MME|1|g, 9MME|1|k, 9MME|1|o, 9MME|1|s, 9MME|1|w, 9MMG|1|c See more about them at RNA 3D Hub by filtering on the chain or the Rfam family.
Loop 22 Hairpin loop
Column numbers: 204-237 - View nucleotides in PDB file(s)
Scored sequences and counts
A-------------GUAA---------------U 61
A-------------GUGA---------------U 56
C-------------GUGA---------------G 17
G-------------GCGA---------------C 16
A-------------GCGA---------------U 14
A-------------GCAA---------------U 13
G-------------GUAA---------------C 10
U-------------GUGA---------------G 9
A-------------GAGA---------------U 8
G-------------GUGA---------------C 8
AUA-----------UUGA-----------AGUGU 5
C-------------GCGA---------------G 4
--------------GUAGUA-------------- 3
G-------------GCAA---------------C 3
G-------------GCAA---------------U 3
U-------------GUGA---------------A 3
--------------AGAA---------------- 3
--------------GAAA---------------- 3
--------------UUCU---------------- 3
C-------------GAAA---------------G 2
G-------------GCGA---------------U 2
G-------------GUAA---------------U 2
--------------GUAA---------------- 2
--------------GUGA---------------- 2
--------------UCCG---------------- 2
UAUAAUUGAUAAGUCCACU-ACUUAUUAAGAA-G 1
U--AUAAUGACUGGGUAAG-UCACCCGUAAGAAG 1
U---------GUAUAAAA--GUACUCAGUGAAGA 1
---GAUGC-AG---GUAA-----CUGGCAUCUAA 1
AUA-AGGC------UAU---------GCCGAAGU 1
AUAUA---------UCGA-------------AGU 1
A-------------UUAAG--------------U 1
A-------------AUAA---------------U 1
A-------------GAGA---------------C 1
A-------------UCGC---------------U 1
C-------------GAGA---------------G 1
G-------------AUGA---------------C 1
G-------------GAAA---------------C 1
G-------------GAGA---------------C 1
U-------------GAAA---------------A 1
U-------------GAAA---------------G 1
U-------------GCGA---------------A 1
U-------------GCGA---------------G 1
U-------------GGAA---------------G 1
--------------AGACA--------------- 1
--------------AGAUA--------------- 1
--------------GUGA---------------A 1
--------------GUGAC--------------- 1
--------------UAUAU--------------- 1
--------------CAGA---------------- 1
--------------GCGA---------------- 1
--------------UUAU---------------- 1
--------------GAA----------------- 1
--------------UUU----------------- 1
--------------GU------------------ 1
Omitted sequenced and counts
---------------------------------- 6
Click on headings to reorder table
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group HL_37824.7
Basepair signature:
|
87.68 | -127.73 | 0 | 0 |
GNRA |
| 2 |
Motif group HL_53890.2
Basepair signature:
|
87.68 | -192.24 | 2 | 1 |
|
| 3 |
Motif group HL_04783.2
Basepair signature:
|
87.32 | -163.35 | 2 | 1 |
|
| 4 |
Motif group HL_52953.3
Basepair signature:
|
87.32 | -664.32 | 2 | 1 |
|
| 5 |
Motif group HL_75660.5
Basepair signature:
|
86.97 | -501.77 | 3 | 1 |
|
| 6 |
Motif group HL_50006.2
Basepair signature:
|
85.92 | -209.77 | 3 | 2 |
|
| 7 |
Motif group HL_13963.3
Basepair signature:
|
85.56 | -196.46 | 3 | 1 |
|
| 8 |
Motif group HL_93535.1
Basepair signature:
|
85.21 | -267.12 | 3 | 1 |
|
| 9 |
Motif group HL_65794.5
Basepair signature:
|
84.86 | -480.57 | 3 | 1 |
Pseudoknot geometry |
| 10 |
Motif group HL_59843.1
Basepair signature:
|
83.10 | -255.03 | 3 | 1 |
|
| 11 |
Motif group HL_48417.5
Basepair signature:
|
75.00 | -162.07 | 3 | 2 |
|
| 12 |
Motif group HL_38901.2
Basepair signature:
|
69.72 | -235.29 | 3 | 2 |
tRNA D-loop |
| 13 |
Motif group HL_56676.1
Basepair signature:
|
68.66 | -248.18 | 3 | 1 |
|
| 14 |
Motif group HL_56334.1
Basepair signature:
|
68.66 | -444.70 | 3 | 2 |
Mini UNCG |
| 15 |
Motif group HL_57875.1
Basepair signature:
|
65.14 | -233.72 | 3 | 2 |
|
| 16 |
Motif group HL_56131.2
Basepair signature:
|
63.38 | -193.68 | 4 | 2 |
|
| 17 |
Motif group HL_34617.5
Basepair signature:
|
60.21 | -232.76 | 3 | 1 |
UNCG |
| 18 |
Motif group HL_13189.1
Basepair signature:
|
59.86 | -202.28 | 3 | 1 |
|
| 19 |
Motif group HL_55195.3
Basepair signature:
|
59.51 | -540.13 | 3 | 1 |
|
| 20 |
Motif group HL_50318.1
Basepair signature:
|
59.15 | -206.05 | 4 | 3 |
|
| 21 |
Motif group HL_70782.2
Basepair signature:
|
59.15 | -457.58 | 3 | 2 |
|
| 22 |
Motif group HL_71391.1
Basepair signature:
|
57.75 | -246.46 | 3 | 2 |
|
| 23 |
Motif group HL_28791.1
Basepair signature:
|
52.11 | -723.02 | 4 | 2 |
|
| 24 |
Motif group HL_80709.3
Basepair signature:
|
51.06 | -1129.23 | 3 | 1 |
|
| 25 |
Motif group HL_62934.1
Basepair signature:
|
49.30 | -256.58 | 4 | 2 |
|
| 26 |
Motif group HL_81100.2
Basepair signature:
|
43.31 | -1196.40 | 4 | 2 |
|
| 27 |
Motif group HL_82710.2
Basepair signature:
|
39.79 | -232.75 | 3 | 2 |
|
| 28 |
Motif group HL_78347.4
Basepair signature:
|
32.75 | -190.11 | 4 | 2 |
|
| 29 |
Motif group HL_78677.1
Basepair signature:
|
32.04 | -472.49 | 3 | 1 |
|
| 30 |
Motif group HL_69752.2
Basepair signature:
|
31.69 | -553.85 | 4 | 2 |
|
| 31 |
Motif group HL_80922.2
Basepair signature:
|
30.28 | -265.83 | 3 | 3 |
|
| 32 |
Motif group HL_27483.1
Basepair signature:
|
29.93 | -225.62 | 4 | 2 |
|
| 33 |
Motif group HL_47787.2
Basepair signature:
|
27.82 | -334.90 | 3 | 2 |
|
| 34 |
Motif group HL_66103.1
Basepair signature:
|
22.54 | -258.11 | 4 | 2 |
|
| 35 |
Motif group HL_57176.2
Basepair signature:
|
20.77 | -1133.89 | 3 | 2 |
Pseudoknot geometry with 3' bulge |
| 36 |
Motif group HL_97917.2
Basepair signature:
|
6.34 | -334.16 | 4 | 2 |
|
| 37 |
Motif group HL_07886.3
Basepair signature:
|
5.28 | -276.24 | 3 | 3 |
|
| 38 |
Motif group HL_20811.4
Basepair signature:
|
4.23 | -220.82 | 4 | 2 |
tRNA D-loop |
| 39 |
Motif group HL_48778.2
Basepair signature:
|
3.52 | -498.14 | 3 | 2 |
Mini UNCG |
| 40 |
Motif group HL_38168.1
Basepair signature:
|
2.82 | -576.71 | 4 | 3 |
|
| 41 |
Motif group HL_87954.2
Basepair signature:
|
2.46 | -294.07 | 3 | 3 |
|
| 42 |
Motif group HL_32346.4
Basepair signature:
|
2.11 | -500.97 | 3 | 2 |
|
| 43 |
Motif group HL_49922.4
Basepair signature:
|
1.76 | -291.20 | 3 | 2 |
|
| 44 |
Motif group HL_22584.6
Basepair signature:
|
1.41 | -263.25 | 4 | 2 |
Fab BL3-6 binding hairpin with tSW |
| 45 |
Motif group HL_46501.1
Basepair signature:
|
1.06 | -228.35 | 4 | 2 |
|
| 46 |
Motif group HL_35941.1
Basepair signature:
|
1.06 | -521.20 | 5 | 3 |
|
| 47 |
Motif group HL_43517.1
Basepair signature:
|
0.70 | -292.61 | 4 | 3 |
|
| 48 |
Motif group HL_20535.2
Basepair signature:
|
0.70 | -341.80 | 5 | 4 |
|
| 49 |
Motif group HL_77436.5
Basepair signature:
|
0.35 | -250.58 | 3 | 2 |
T-loop related |
| 50 |
Motif group HL_87553.1
Basepair signature:
|
0.35 | -262.94 | 4 | 4 |
|
| 51 |
Motif group HL_08100.1
Basepair signature:
|
0.35 | -309.30 | 5 | 3 |
|
| 52 |
Motif group HL_02483.1
Basepair signature:
|
0.35 | -555.04 | 8 | 6 |
|
| 53 |
Motif group HL_99040.1
Basepair signature:
|
0.35 | -650.23 | 5 | 3 |
|
| 54 |
Motif group HL_25967.2
Basepair signature:
|
0.35 | -816.99 | 4 | 3 |
|
| 55 |
Motif group HL_10453.3
Basepair signature:
|
0.35 | -946.10 | 4 | 3 |
tRNA anticodon loop |
| 56 |
Motif group HL_70751.1
Basepair signature:
|
0.35 | -5427.08 | 7 | 6 |
|
| 57 |
Motif group HL_20167.2
Basepair signature:
|
0.00 | -135.77 | 4 | 3 |
|
| 58 |
Motif group HL_50860.2
Basepair signature:
|
0.00 | -143.04 | 4 | 4 |
|
| 59 |
Motif group HL_86769.4
Basepair signature:
|
0.00 | -154.74 | 3 | 3 |
|
| 60 |
Motif group HL_41902.1
Basepair signature:
|
0.00 | -161.52 | 8 | 7 |
|
| 61 |
Motif group HL_26934.1
Basepair signature:
|
0.00 | -162.07 | 5 | 3 |
|
| 62 |
Motif group HL_93438.2
Basepair signature:
|
0.00 | -165.93 | 5 | 5 |
|
| 63 |
Motif group HL_02887.3
Basepair signature:
|
0.00 | -168.11 | 6 | 5 |
T-loop with 3 stacked bulged bases |
| 64 |
Motif group HL_86012.1
Basepair signature:
|
0.00 | -172.10 | 6 | 4 |
T-loop with unstacked turn |
| 65 |
Motif group HL_41464.2
Basepair signature:
|
0.00 | -177.84 | 5 | 4 |
|
| 66 |
Motif group HL_41543.1
Basepair signature:
|
0.00 | -185.34 | 8 | 6 |
|
| 67 |
Motif group HL_61996.2
Basepair signature:
|
0.00 | -189.38 | 5 | 4 |
|
| 68 |
Motif group HL_68257.1
Basepair signature:
|
0.00 | -190.41 | 7 | 6 |
|
| 69 |
Motif group HL_66853.7
Basepair signature:
|
0.00 | -191.45 | 5 | 4 |
|
| 70 |
Motif group HL_20743.5
Basepair signature:
|
0.00 | -194.02 | 5 | 4 |
|
| 71 |
Motif group HL_81545.2
Basepair signature:
|
0.00 | -194.97 | 6 | 5 |
|
| 72 |
Motif group HL_67079.1
Basepair signature:
|
0.00 | -197.22 | 6 | 5 |
|
| 73 |
Motif group HL_36335.1
Basepair signature:
|
0.00 | -201.48 | 6 | 5 |
|
| 74 |
Motif group HL_70658.1
Basepair signature:
|
0.00 | -214.52 | 7 | 7 |
|
| 75 |
Motif group HL_18423.1
Basepair signature:
|
0.00 | -217.41 | 7 | 5 |
|
| 76 |
Motif group HL_98864.1
Basepair signature:
|
0.00 | -220.11 | 6 | 5 |
T-loop with unstacked turn |
| 77 |
Motif group HL_90620.1
Basepair signature:
|
0.00 | -221.35 | 6 | 6 |
|
| 78 |
Motif group HL_83808.4
Basepair signature:
|
0.00 | -222.30 | 7 | 5 |
Pseudoknot |
| 79 |
Motif group HL_57863.1
Basepair signature:
|
0.00 | -225.37 | 5 | 5 |
G-quadruplex fragment |
| 80 |
Motif group HL_74379.3
Basepair signature:
|
0.00 | -227.36 | 8 | 7 |
|
| 81 |
Motif group HL_28252.8
Basepair signature:
|
0.00 | -229.36 | 4 | 4 |
T-loop with 2 stacked bulged bases |
| 82 |
Motif group HL_07583.1
Basepair signature:
|
0.00 | -229.96 | 9 | 9 |
|
| 83 |
Motif group HL_53504.3
Basepair signature:
|
0.00 | -230.16 | 6 | 4 |
|
| 84 |
Motif group HL_13529.1
Basepair signature:
|
0.00 | -232.79 | 5 | 4 |
|
| 85 |
Motif group HL_73266.9
Basepair signature:
|
0.00 | -234.76 | 4 | 4 |
|
| 86 |
Motif group HL_04642.1
Basepair signature:
|
0.00 | -235.61 | 6 | 5 |
tRNA D-loop |
| 87 |
Motif group HL_04171.7
Basepair signature:
|
0.00 | -236.63 | 6 | 6 |
|
| 88 |
Motif group HL_74055.2
Basepair signature:
|
0.00 | -237.12 | 10 | 9 |
|
| 89 |
Motif group HL_86109.1
Basepair signature:
|
0.00 | -241.18 | 8 | 7 |
|
| 90 |
Motif group HL_01609.3
Basepair signature:
|
0.00 | -241.90 | 4 | 3 |
T-loop with 2 bulged bases not stacked |
| 91 |
Motif group HL_68767.1
Basepair signature:
|
0.00 | -241.94 | 8 | 7 |
tRNA D-loop |
| 92 |
Motif group HL_01962.2
Basepair signature:
|
0.00 | -244.51 | 7 | 6 |
|
| 93 |
Motif group HL_40252.4
Basepair signature:
|
0.00 | -245.78 | 7 | 5.5 |
|
| 94 |
Motif group HL_81205.3
Basepair signature:
|
0.00 | -247.93 | 9 | 9 |
|
| 95 |
Motif group HL_45175.1
Basepair signature:
|
0.00 | -248.33 | 5 | 4 |
tRNA D-loop |
| 96 |
Motif group HL_89567.2
Basepair signature:
|
0.00 | -250.95 | 4 | 3 |
|
| 97 |
Motif group HL_60266.1
Basepair signature:
|
0.00 | -251.19 | 7 | 5 |
|
| 98 |
Motif group HL_84847.1
Basepair signature:
|
0.00 | -252.60 | 10 | 9 |
|
| 99 |
Motif group HL_16991.1
Basepair signature:
|
0.00 | -252.63 | 7 | 6 |
G-quadruplex fragment |
| 100 |
Motif group HL_32392.1
Basepair signature:
|
0.00 | -252.80 | 4 | 3 |
|
| 101 |
Motif group HL_49941.1
Basepair signature:
|
0.00 | -255.59 | 7 | 5.5 |
tRNA D-loop |
| 102 |
Motif group HL_18565.1
Basepair signature:
|
0.00 | -255.76 | 4 | 4 |
|
| 103 |
Motif group HL_42046.2
Basepair signature:
|
0.00 | -260.44 | 4 | 2 |
|
| 104 |
Motif group HL_08602.1
Basepair signature:
|
0.00 | -261.92 | 9 | 8 |
|
| 105 |
Motif group HL_73247.1
Basepair signature:
|
0.00 | -275.89 | 10 | 9 |
Pseudoknot geometry |
| 106 |
Motif group HL_23509.1
Basepair signature:
|
0.00 | -277.43 | 8 | 8 |
|
| 107 |
Motif group HL_77082.1
Basepair signature:
|
0.00 | -279.92 | 4 | 3 |
Pseudoknot geometry |
| 108 |
Motif group HL_25847.2
Basepair signature:
|
0.00 | -284.41 | 7 | 6 |
|
| 109 |
Motif group HL_10540.1
Basepair signature:
|
0.00 | -284.94 | 5 | 3 |
|
| 110 |
Motif group HL_50537.6
Basepair signature:
|
0.00 | -285.24 | 4 | 3 |
tRNA anticodon loop with synthetase |
| 111 |
Motif group HL_89893.1
Basepair signature:
|
0.00 | -288.11 | 5 | 3 |
|
| 112 |
Motif group HL_75293.5
Basepair signature:
|
0.00 | -288.37 | 4 | 4 |
|
| 113 |
Motif group HL_86870.2
Basepair signature:
|
0.00 | -289.15 | 3 | 3 |
|
| 114 |
Motif group HL_99748.1
Basepair signature:
|
0.00 | -291.07 | 4 | 3 |
Other HL |
| 115 |
Motif group HL_28075.1
Basepair signature:
|
0.00 | -294.04 | 5 | 4 |
|
| 116 |
Motif group HL_04259.3
Basepair signature:
|
0.00 | -297.04 | 3 | 3 |
GNRA with extra cWW |
| 117 |
Motif group HL_98252.1
Basepair signature:
|
0.00 | -298.88 | 7 | 7 |
|
| 118 |
Motif group HL_14757.1
Basepair signature:
|
0.00 | -299.13 | 13 | 13 |
|
| 119 |
Motif group HL_37344.1
Basepair signature:
|
0.00 | -299.88 | 5 | 3 |
|
| 120 |
Motif group HL_98870.1
Basepair signature:
|
0.00 | -300.68 | 11 | 9 |
|
| 121 |
Motif group HL_84299.4
Basepair signature:
|
0.00 | -301.45 | 5 | 4 |
|
| 122 |
Motif group HL_64690.6
Basepair signature:
|
0.00 | -302.05 | 4 | 3 |
|
| 123 |
Motif group HL_91641.1
Basepair signature:
|
0.00 | -311.10 | 11 | 11 |
|
| 124 |
Motif group HL_85434.1
Basepair signature:
|
0.00 | -320.32 | 7 | 5 |
|
| 125 |
Motif group HL_47854.1
Basepair signature:
|
0.00 | -320.72 | 5 | 4 |
|
| 126 |
Motif group HL_81538.2
Basepair signature:
|
0.00 | -353.26 | 3 | 2 |
GNRA with tandem sheared |
| 127 |
Motif group HL_93616.2
Basepair signature:
|
0.00 | -355.90 | 7 | 6 |
tRNA D-loop |
| 128 |
Motif group HL_30068.2
Basepair signature:
|
0.00 | -379.24 | 4 | 3 |
|
| 129 |
Motif group HL_29129.3
Basepair signature:
|
0.00 | -387.73 | 6 | 5 |
|
| 130 |
Motif group HL_13971.1
Basepair signature:
|
0.00 | -390.92 | 10 | 8 |
|
| 131 |
Motif group HL_73255.1
Basepair signature:
|
0.00 | -398.22 | 6 | 5 |
|
| 132 |
Motif group HL_51921.1
Basepair signature:
|
0.00 | -418.86 | 16 | 15 |
|
| 133 |
Motif group HL_80008.1
Basepair signature:
|
0.00 | -450.56 | 6 | 4 |
|
| 134 |
Motif group HL_72628.1
Basepair signature:
|
0.00 | -451.88 | 5 | 4 |
|
| 135 |
Motif group HL_21372.1
Basepair signature:
|
0.00 | -462.12 | 4 | 4 |
|
| 136 |
Motif group HL_92488.1
Basepair signature:
|
0.00 | -464.99 | 11 | 11 |
|
| 137 |
Motif group HL_88205.2
Basepair signature:
|
0.00 | -480.43 | 4 | 4 |
|
| 138 |
Motif group HL_18978.1
Basepair signature:
|
0.00 | -541.25 | 6 | 5 |
|
| 139 |
Motif group HL_06226.4
Basepair signature:
|
0.00 | -553.87 | 7 | 6 |
|
| 140 |
Motif group HL_22135.1
Basepair signature:
|
0.00 | -556.25 | 4 | 3 |
|
| 141 |
Motif group HL_39243.1
Basepair signature:
|
0.00 | -565.92 | 4 | 4 |
|
| 142 |
Motif group HL_45785.1
Basepair signature:
|
0.00 | -571.87 | 9 | 7 |
|
| 143 |
Motif group HL_91939.2
Basepair signature:
|
0.00 | -582.49 | 8 | 7 |
|
| 144 |
Motif group HL_89881.5
Basepair signature:
|
0.00 | -590.49 | 7 | 6 |
|
| 145 |
Motif group HL_05304.3
Basepair signature:
|
0.00 | -593.67 | 7 | 7 |
|
| 146 |
Motif group HL_02581.1
Basepair signature:
|
0.00 | -600.01 | 10 | 9 |
tRNA D-loop |
| 147 |
Motif group HL_76094.1
Basepair signature:
|
0.00 | -605.37 | 4 | 4 |
|
| 148 |
Motif group HL_60914.1
Basepair signature:
|
0.00 | -605.58 | 5 | 3 |
|
| 149 |
Motif group HL_87463.1
Basepair signature:
|
0.00 | -612.50 | 6 | 5 |
|
| 150 |
Motif group HL_58224.1
Basepair signature:
|
0.00 | -624.33 | 6 | 5 |
|
| 151 |
Motif group HL_15802.1
Basepair signature:
|
0.00 | -627.03 | 5 | 4 |
|
| 152 |
Motif group HL_94980.1
Basepair signature:
|
0.00 | -629.69 | 5 | 3 |
|
| 153 |
Motif group HL_07480.2
Basepair signature:
|
0.00 | -636.76 | 6 | 6 |
|
| 154 |
Motif group HL_97756.2
Basepair signature:
|
0.00 | -645.84 | 10 | 10 |
|
| 155 |
Motif group HL_99769.3
Basepair signature:
|
0.00 | -666.51 | 6 | 6 |
|
| 156 |
Motif group HL_23010.1
Basepair signature:
|
0.00 | -668.46 | 7 | 5.5 |
|
| 157 |
Motif group HL_04641.1
Basepair signature:
|
0.00 | -674.01 | 6 | 5 |
|
| 158 |
Motif group HL_53454.2
Basepair signature:
|
0.00 | -732.74 | 6 | 4 |
|
| 159 |
Motif group HL_33983.1
Basepair signature:
|
0.00 | -741.91 | 5 | 4 |
|
| 160 |
Motif group HL_25061.1
Basepair signature:
|
0.00 | -746.63 | 5 | 3 |
|
| 161 |
Motif group HL_11542.1
Basepair signature:
|
0.00 | -754.78 | 9 | 8 |
|
| 162 |
Motif group HL_37369.2
Basepair signature:
|
0.00 | -763.08 | 4 | 2 |
|
| 163 |
Motif group HL_08510.1
Basepair signature:
|
0.00 | -763.36 | 5 | 5 |
|
| 164 |
Motif group HL_97733.1
Basepair signature:
|
0.00 | -774.55 | 7 | 5 |
|
| 165 |
Motif group HL_34964.1
Basepair signature:
|
0.00 | -775.02 | 7 | 6 |
|
| 166 |
Motif group HL_55436.1
Basepair signature:
|
0.00 | -787.99 | 5 | 4 |
|
| 167 |
Motif group HL_38649.1
Basepair signature:
|
0.00 | -831.66 | 8 | 6 |
|
| 168 |
Motif group HL_93383.1
Basepair signature:
|
0.00 | -836.02 | 6 | 5 |
|
| 169 |
Motif group HL_38046.1
Basepair signature:
|
0.00 | -844.33 | 5 | 5 |
|
| 170 |
Motif group HL_27670.2
Basepair signature:
|
0.00 | -846.37 | 4 | 4 |
T-loop with unstacked turn |
| 171 |
Motif group HL_85367.2
Basepair signature:
|
0.00 | -862.58 | 5 | 4 |
|
| 172 |
Motif group HL_83632.1
Basepair signature:
|
0.00 | -873.20 | 4 | 3 |
tRNA anticodon loop |
| 173 |
Motif group HL_06059.6
Basepair signature:
|
0.00 | -892.56 | 4 | 3 |
tRNA anticodon loop |
| 174 |
Motif group HL_02817.2
Basepair signature:
|
0.00 | -911.91 | 5 | 4 |
|
| 175 |
Motif group HL_00914.1
Basepair signature:
|
0.00 | -918.43 | 5 | 3 |
|
| 176 |
Motif group HL_38808.1
Basepair signature:
|
0.00 | -949.56 | 4 | 4 |
|
| 177 |
Motif group HL_42998.2
Basepair signature:
|
0.00 | -997.00 | 4 | 2 |
|
| 178 |
Motif group HL_89199.2
Basepair signature:
|
0.00 | -1039.52 | 4 | 3 |
Mini UNCG |
| 179 |
Motif group HL_15574.1
Basepair signature:
|
0.00 | -1134.20 | 5 | 4 |
|
| 180 |
Motif group HL_31585.4
Basepair signature:
|
0.00 | -1136.61 | 3 | 3 |
Purine riboswitch |
| 181 |
Motif group HL_12870.1
Basepair signature:
|
0.00 | -1162.44 | 10 | 8 |
|
| 182 |
Motif group HL_65313.1
Basepair signature:
|
0.00 | -1168.68 | 5 | 3 |
|
| 183 |
Motif group HL_29966.1
Basepair signature:
|
0.00 | -1190.25 | 4 | 4 |
|
| 184 |
Motif group HL_78197.1
Basepair signature:
|
0.00 | -1193.28 | 4 | 3 |
|
| 185 |
Motif group HL_86883.1
Basepair signature:
|
0.00 | -1216.94 | 4 | 4 |
|
| 186 |
Motif group HL_26631.1
Basepair signature:
|
0.00 | -1230.21 | 4 | 3 |
|
| 187 |
Motif group HL_67667.2
Basepair signature:
|
0.00 | -1277.98 | 5 | 3 |
|
| 188 |
Motif group HL_93324.4
Basepair signature:
|
0.00 | -1296.83 | 4 | 2 |
Pseudoknot geometry |
| 189 |
Motif group HL_33074.4
Basepair signature:
|
0.00 | -3926.40 | 8 | 8 |
U1 small nuclear ribonucleoprotein A binding hairpin |
| 190 |
Motif group HL_89346.1
Basepair signature:
|
0.00 | -3942.68 | 14 | 13 |
|
| 191 |
Motif group HL_59564.1
Basepair signature:
|
0.00 | -3951.70 | 16 | 15 |
|
| 192 |
Motif group HL_99324.1
Basepair signature:
|
0.00 | -3966.91 | 12 | 12 |
|
| 193 |
Motif group HL_85461.1
Basepair signature:
|
0.00 | -3980.26 | 15 | 14 |
|
| 194 |
Motif group HL_21400.1
Basepair signature:
|
0.00 | -3988.97 | 17 | 17 |
G-quadruplex |
| 195 |
Motif group HL_60293.1
Basepair signature:
|
0.00 | -3991.58 | 17 | 16 |
G-quadruplex |
| 196 |
Motif group HL_00317.1
Basepair signature:
|
0.00 | -3992.55 | 16 | 15 |
|
| 197 |
Motif group HL_10456.1
Basepair signature:
|
0.00 | -4004.25 | 13 | 13 |
|
| 198 |
Motif group HL_35354.1
Basepair signature:
|
0.00 | -4013.69 | 18 | 18 |
|
| 199 |
Motif group HL_12758.3
Basepair signature:
|
0.00 | -4019.40 | 20 | 19 |
G-quadruplex |
| 200 |
Motif group HL_66482.1
Basepair signature:
|
0.00 | -4057.97 | 13 | 12 |
|
| 201 |
Motif group HL_50851.1
Basepair signature:
|
0.00 | -4335.48 | 8 | 7 |
G-quadruplex fragment |
| 202 |
Motif group HL_73916.1
Basepair signature:
|
0.00 | -4591.21 | 34 | 34 |
|
| 203 |
Motif group HL_04725.1
Basepair signature:
|
0.00 | -4664.56 | 8 | 8 |
|
| 204 |
Motif group HL_07903.1
Basepair signature:
|
0.00 | -4819.84 | 10 | 10 |
|
| 205 |
Motif group HL_31581.6
Basepair signature:
|
0.00 | -4865.32 | 8 | 7 |
|
| 206 |
Motif group HL_20751.2
Basepair signature:
|
0.00 | -4872.19 | 9 | 8 |
|
| 207 |
Motif group HL_88364.2
Basepair signature:
|
0.00 | -4876.82 | 11 | 11 |
|
| 208 |
Motif group HL_63355.1
Basepair signature:
|
0.00 | -4882.78 | 10 | 9 |
|
| 209 |
Motif group HL_73183.1
Basepair signature:
|
0.00 | -4899.08 | 10 | 10 |
Pseudoknot geometry with G-bulge |
| 210 |
Motif group HL_67407.5
Basepair signature:
|
0.00 | -5030.51 | 6 | 5 |
|
| 211 |
Motif group HL_50779.4
Basepair signature:
|
0.00 | -5176.79 | 6 | 5 |
|
| 212 |
Motif group HL_15118.1
Basepair signature:
|
0.00 | -5207.51 | 8 | 8 |
|
| 213 |
Motif group HL_23115.1
Basepair signature:
|
0.00 | -5236.88 | 7 | 6 |
tRNA D-loop |
| 214 |
Motif group HL_94376.1
Basepair signature:
|
0.00 | -5262.22 | 6 | 5 |
Pseudoknot geometry |
| 215 |
Motif group HL_81312.1
Basepair signature:
|
0.00 | -5262.96 | 8 | 8 |
|
| 216 |
Motif group HL_19210.3
Basepair signature:
|
0.00 | -5300.32 | 6 | 5 |
|
| 217 |
Motif group HL_24792.1
Basepair signature:
|
0.00 | -5351.70 | 6 | 5 |
|
| 218 |
Motif group HL_55305.1
Basepair signature:
|
0.00 | -5425.65 | 8 | 7 |
|
| 219 |
Motif group HL_80599.2
Basepair signature:
|
0.00 | -5439.14 | 6 | 4 |
|
| 220 |
Motif group HL_88558.1
Basepair signature:
|
0.00 | -5446.04 | 8 | 7 |
|
| 221 |
Motif group HL_91503.7
Basepair signature:
|
0.00 | -5463.76 | 6 | 5 |
|
| 222 |
Motif group HL_80411.1
Basepair signature:
|
0.00 | -5510.48 | 7 | 6 |
tRNA D-loop |
| 223 |
Motif group HL_01255.1
Basepair signature:
|
0.00 | -5560.33 | 8 | 7 |
|
| 224 |
Motif group HL_36684.4
Basepair signature:
|
0.00 | -5572.86 | 6 | 5 |
|
| 225 |
Motif group HL_78284.1
Basepair signature:
|
0.00 | -5576.04 | 8 | 7 |
|
| 226 |
Motif group HL_29762.1
Basepair signature:
|
0.00 | -5582.95 | 6 | 5 |
|
| 227 |
Motif group HL_50418.1
Basepair signature:
|
0.00 | -5700.41 | 7 | 6 |
|
| 228 |
Motif group HL_16398.2
Basepair signature:
|
0.00 | -5743.32 | 8 | 7 |
|
| 229 |
Motif group HL_32735.2
Basepair signature:
|
0.00 | -5748.34 | 4 | 4 |
|
| 230 |
Motif group HL_68572.1
Basepair signature:
|
0.00 | -5783.96 | 9 | 8 |
|
| 231 |
Motif group HL_93135.1
Basepair signature:
|
0.00 | -5857.88 | 7 | 6 |
Pseudoknot |
| 232 |
Motif group HL_74292.1
Basepair signature:
|
0.00 | -5939.20 | 6 | 5 |
|
| 233 |
Motif group HL_47732.1
Basepair signature:
|
0.00 | -5989.93 | 9 | 8 |
|
| 234 |
Motif group HL_64292.1
Basepair signature:
|
0.00 | -6024.81 | 12 | 11 |
|
| 235 |
Motif group HL_59330.1
Basepair signature:
|
0.00 | -6058.85 | 6 | 4 |
|
| 236 |
Motif group HL_29958.1
Basepair signature:
|
0.00 | -6189.52 | 8 | 8 |
|
| 237 |
Motif group HL_69139.1
Basepair signature:
|
0.00 | -6346.38 | 7 | 6 |
|
| 238 |
Motif group HL_35677.3
Basepair signature:
|
0.00 | -6532.07 | 6 | 5 |
|
| 239 |
Motif group HL_99867.1
Basepair signature:
|
0.00 | -6593.84 | 5 | 4 |
|
| 240 |
Motif group HL_80362.1
Basepair signature:
|
0.00 | -6916.90 | 6 | 5 |
|
| 241 |
Motif group HL_20781.1
Basepair signature:
|
0.00 | -7208.77 | 7 | 6 |
|
| 242 |
Motif group HL_80241.1
Basepair signature:
|
0.00 | -7484.39 | 5 | 3 |
|
| 243 |
Motif group HL_85993.1
Basepair signature:
|
0.00 | -7720.94 | 4 | 3 |
|
| 244 |
Motif group HL_22622.1
Basepair signature:
|
0.00 | -7794.15 | 5 | 4 |
|
| 245 |
Motif group HL_51447.1
Basepair signature:
|
0.00 | -7929.16 | 5 | 3 |
|
| 246 |
Motif group HL_09452.1
Basepair signature:
|
0.00 | -8292.69 | 5 | 4 |
|
| 247 |
Motif group HL_58539.1
Basepair signature:
|
0.00 | -8429.23 | 12 | 11 |
|
| 248 |
Motif group HL_97983.1
Basepair signature:
|
0.00 | -8466.72 | 5 | 4 |
|
| 249 |
Motif group HL_77600.2
Basepair signature:
|
0.00 | -9478.57 | 4 | 3 |
|
| 250 |
Motif group HL_07951.3
Basepair signature:
|
0.00 | -9999.00 | 5 | 4 |
tRNA D-loop |
| 251 |
Motif group HL_09260.2
Basepair signature:
|
0.00 | -9999.00 | 7 | 6 |
tRNA D-loop |
| 252 |
Motif group HL_30680.3
Basepair signature:
|
0.00 | -9999.00 | 4 | 3 |
Pseudoknot geometry |
| 253 |
Motif group HL_59735.5
Basepair signature:
|
0.00 | -9999.00 | 4 | 3 |
|