JAR3D
Query RF03087-CCF-3.98 completed
Run on Motif Atlas Version
using the Rfam secondary structure. Run with the CaCoFold secondary structure.
Rfam family RF03087 maps to these 30 chains: 9ISV|1|A, 9J3R|1|A, 9J3R|1|B, 9J3R|1|C, 9J3R|1|D, 9J3T|1|A, 9J3T|1|B, 9J3T|1|C, 9J3T|1|D, 9J3T|1|E, 9J3T|1|F, 9J3T|1|G, 9J3T|1|H, 9MM6|1|A, 9MM6|1|E, 9MM6|1|I, 9MM6|1|M, 9MM6|1|Q, 9MM6|1|U, 9MM6|1|Y, 9MM6|1|c, 9MME|1|U, 9MME|1|Y, 9MME|1|c, 9MME|1|g, 9MME|1|k, 9MME|1|o, 9MME|1|s, 9MME|1|w, 9MMG|1|c See more about them at RNA 3D Hub by filtering on the chain or the Rfam family.
Loop 23 Hairpin loop
Column numbers: 260-294 - View nucleotides in PDB file(s)
Scored sequences and counts
G----------AAA--------------------C 49
U----------GAA--------------------G 26
G----------CAA--------------------U 24
A----------UACA-------------------U 19
C----------AGAU-------------------G 8
G----------AUAAG------------------C 7
A----------AAA--------------------U 7
GU---------AAGUAGUCAAC-----------AC 6
-----------CAAAA------------------- 6
U----------AAA--------------------A 6
A----------AGAU-------------------U 4
C-UC-------AAAACG--------------GAGG 3
G----------CAAAG------------------C 3
U----------GGAAA------------------A 3
A----------ACA--------------------U 3
C----------AAA--------------------A 3
U----------GAC--------------------G 3
ACC--------GAAAAGGAAAUA---------GGU 2
C----------GUAAGACACUUG-----------G 2
GUA--------GACAAAGA-------------UGC 2
GUG--------GAAG-----------------CAC 2
GUG--------GAAG-----------------CAU 2
A----------AAAAAG-----------------U 2
U----------UAAU-------------------U 2
-----------UCAAU------------------- 2
C----------AAA--------------------G 2
G----------GAA--------------------C 2
U----------GGA--------------------G 2
-----------GAAC-------------------- 2
-----------UCAA-------------------- 2
-----------UGAU-------------------- 2
G----------C-A--------------------U 2
GUAGAGGCCGUGAAACCGCAUA--ACGGUC---GC 1
UUCGCUC----GAAACA-----------GAG-GUG 1
CUC--------AAAACGGAGGUGG----------- 1
GG---------AGCAGGAACCGC----------CC 1
G----------UAAGUAGUCAACA----------C 1
GU---------AGAUAAAGAC------------GC 1
GUA--------GAUAAAGA-------------UAC 1
-----------GAGGCUGAACCAA----------- 1
-----------GUAACACACUUG------------ 1
-----------GUAAGACACUUG------------ 1
-----------GUAAUACACUUG------------ 1
CUC--------GAAACA---------------GAG 1
A----------AAUAAAGC---------------U 1
AG---------CUACGA----------------UU 1
CU---------UAAAUG----------------AG 1
-----------AUUAAAAGA--------------- 1
A----------AAAAAAG----------------U 1
AC---------GGAAA-----------------GU 1
U----------AAAGGUG----------------U 1
A----------UAAAUU-----------------U 1
AU---------GGAAA-----------------A- 1
C----------UAAAUG-----------------G 1
G----------AUAAAA-----------------C 1
G----------GUGAAA-----------------U 1
G----------UAAAAG-----------------C 1
G----------UAAGUU-----------------U 1
U----------GAGAGA-----------------G 1
U----------GGUAGA-----------------G 1
U----------UAAAUG-----------------A 1
U----------UUAAUU-----------------A 1
A----------UACCA------------------U 1
C----------GAAAG------------------U 1
G----------AGAAA------------------C 1
GC---------AAA-------------------GC 1
U----------AAACA------------------A 1
U----------AAAUU------------------U 1
-----------AAUAAA------------------ 1
-----------GGCUGA------------------ 1
-----------GUAAAA------------------ 1
-----------UUGAGU------------------ 1
A----------GAAC-------------------U 1
C----------AAGA-------------------G 1
C----------AGAA-------------------G 1
C----------AGAG-------------------G 1
C----------GAAA-------------------G 1
G----------GAAC-------------------C 1
G----------GAAU-------------------C 1
G----------UAAA-------------------A 1
U----------AAAA-------------------G 1
U----------AAUA-------------------A 1
A----------AAC--------------------U 1
A----------GCA--------------------U 1
C----------AGU--------------------G 1
C----------GCA--------------------G 1
C----------UCA--------------------G 1
G----------AAA--------------------U 1
G----------ACA--------------------C 1
G----------AGA--------------------C 1
G----------GAC--------------------U 1
G----------GGA--------------------A 1
G----------UGU--------------------U 1
U----------GGA--------------------A 1
U----------GUCA-------------------- 1
-----------GAAA-------------------- 1
-----------UAGU-------------------- 1
-----------UGAA-------------------- 1
-----------UGUC-------------------- 1
-----------UGUU-------------------- 1
A----------ACA--------------------- 1
G----------AAA--------------------- 1
G----------AGA--------------------- 1
-----------AAG--------------------- 1
-----------AGU--------------------- 1
Omitted sequenced and counts
----------------------------------- 7
Click on headings to reorder table
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group HL_75660.5
Basepair signature:
|
70.32 | -1082.44 | 2 | 1 |
|
| 2 |
Motif group HL_53890.2
Basepair signature:
|
66.43 | -186.84 | 2 | 1 |
|
| 3 |
Motif group HL_04783.2
Basepair signature:
|
62.54 | -111.54 | 3 | 2 |
|
| 4 |
Motif group HL_70782.2
Basepair signature:
|
57.95 | -1039.30 | 4 | 2 |
|
| 5 |
Motif group HL_56334.1
Basepair signature:
|
56.89 | -1048.80 | 3 | 2 |
Mini UNCG |
| 6 |
Motif group HL_82710.2
Basepair signature:
|
54.06 | -741.17 | 3 | 2 |
|
| 7 |
Motif group HL_38168.1
Basepair signature:
|
53.71 | -1089.57 | 3 | 2 |
|
| 8 |
Motif group HL_38901.2
Basepair signature:
|
53.00 | -893.32 | 3 | 2 |
tRNA D-loop |
| 9 |
Motif group HL_13189.1
Basepair signature:
|
51.94 | -758.28 | 3 | 2 |
|
| 10 |
Motif group HL_50006.2
Basepair signature:
|
50.18 | -278.47 | 3 | 2 |
|
| 11 |
Motif group HL_48417.5
Basepair signature:
|
46.64 | -86.46 | 3 | 2 |
|
| 12 |
Motif group HL_80709.3
Basepair signature:
|
40.64 | -1642.04 | 3 | 1 |
|
| 13 |
Motif group HL_48778.2
Basepair signature:
|
39.22 | -1057.61 | 2 | 1 |
Mini UNCG |
| 14 |
Motif group HL_32346.4
Basepair signature:
|
36.40 | -1062.94 | 3 | 2 |
|
| 15 |
Motif group HL_22135.1
Basepair signature:
|
36.40 | -1402.15 | 4 | 2 |
|
| 16 |
Motif group HL_86870.2
Basepair signature:
|
32.16 | -225.09 | 3 | 2 |
|
| 17 |
Motif group HL_57176.2
Basepair signature:
|
32.16 | -1639.25 | 2 | 2 |
Pseudoknot geometry with 3' bulge |
| 18 |
Motif group HL_69752.2
Basepair signature:
|
30.04 | -1125.96 | 4 | 2 |
|
| 19 |
Motif group HL_29966.1
Basepair signature:
|
28.62 | -1667.05 | 4 | 3 |
|
| 20 |
Motif group HL_56131.2
Basepair signature:
|
25.09 | -214.76 | 3 | 3 |
|
| 21 |
Motif group HL_76094.1
Basepair signature:
|
24.73 | -1991.18 | 3 | 2 |
|
| 22 |
Motif group HL_46501.1
Basepair signature:
|
19.08 | -912.48 | 4 | 2 |
|
| 23 |
Motif group HL_93535.1
Basepair signature:
|
16.25 | -343.01 | 3 | 2 |
|
| 24 |
Motif group HL_78677.1
Basepair signature:
|
15.55 | -1327.69 | 3 | 2 |
|
| 25 |
Motif group HL_55195.3
Basepair signature:
|
13.07 | -1160.68 | 3 | 2 |
|
| 26 |
Motif group HL_59843.1
Basepair signature:
|
11.66 | -429.31 | 3 | 2 |
|
| 27 |
Motif group HL_62934.1
Basepair signature:
|
10.60 | -315.90 | 3 | 2 |
|
| 28 |
Motif group HL_22584.6
Basepair signature:
|
9.89 | -295.69 | 3 | 2 |
Fab BL3-6 binding hairpin with tSW |
| 29 |
Motif group HL_57875.1
Basepair signature:
|
9.89 | -774.31 | 3 | 2 |
|
| 30 |
Motif group HL_07886.3
Basepair signature:
|
8.83 | -239.96 | 4 | 3 |
|
| 31 |
Motif group HL_80922.2
Basepair signature:
|
7.77 | -241.06 | 3 | 2 |
|
| 32 |
Motif group HL_43517.1
Basepair signature:
|
7.77 | -797.33 | 4 | 3 |
|
| 33 |
Motif group HL_39243.1
Basepair signature:
|
7.42 | -6319.57 | 4 | 3 |
|
| 34 |
Motif group HL_13529.1
Basepair signature:
|
7.07 | -140.09 | 4 | 3 |
|
| 35 |
Motif group HL_20811.4
Basepair signature:
|
6.71 | -124.15 | 4 | 2 |
tRNA D-loop |
| 36 |
Motif group HL_87954.2
Basepair signature:
|
6.71 | -339.41 | 3 | 2 |
|
| 37 |
Motif group HL_34617.5
Basepair signature:
|
6.71 | -370.49 | 3 | 2 |
UNCG |
| 38 |
Motif group HL_15574.1
Basepair signature:
|
6.71 | -1268.28 | 4 | 3 |
|
| 39 |
Motif group HL_89199.2
Basepair signature:
|
6.36 | -1493.99 | 4 | 3 |
Mini UNCG |
| 40 |
Motif group HL_50318.1
Basepair signature:
|
6.01 | -856.64 | 5 | 4 |
|
| 41 |
Motif group HL_89893.1
Basepair signature:
|
5.65 | -692.06 | 5 | 3 |
|
| 42 |
Motif group HL_59735.5
Basepair signature:
|
5.65 | -3483.62 | 3 | 2 |
|
| 43 |
Motif group HL_37824.7
Basepair signature:
|
4.95 | -201.46 | 1 | 1 |
GNRA |
| 44 |
Motif group HL_65794.5
Basepair signature:
|
4.59 | -6438.79 | 2 | 2 |
Pseudoknot geometry |
| 45 |
Motif group HL_77436.5
Basepair signature:
|
3.89 | -184.47 | 3 | 3 |
T-loop related |
| 46 |
Motif group HL_52953.3
Basepair signature:
|
3.89 | -6589.60 | 3 | 2 |
|
| 47 |
Motif group HL_20535.2
Basepair signature:
|
3.53 | -283.89 | 4 | 3 |
|
| 48 |
Motif group HL_35941.1
Basepair signature:
|
3.53 | -1353.45 | 5 | 3 |
|
| 49 |
Motif group HL_10540.1
Basepair signature:
|
3.18 | -160.03 | 4 | 3 |
|
| 50 |
Motif group HL_13963.3
Basepair signature:
|
2.83 | -241.59 | 4 | 3 |
|
| 51 |
Motif group HL_87553.1
Basepair signature:
|
2.47 | -180.02 | 4 | 4 |
|
| 52 |
Motif group HL_84299.4
Basepair signature:
|
2.47 | -249.03 | 5 | 4 |
|
| 53 |
Motif group HL_93324.4
Basepair signature:
|
2.47 | -6371.32 | 4 | 3 |
Pseudoknot geometry |
| 54 |
Motif group HL_50860.2
Basepair signature:
|
2.12 | -130.17 | 4 | 4 |
|
| 55 |
Motif group HL_49922.4
Basepair signature:
|
2.12 | -256.46 | 3 | 2 |
|
| 56 |
Motif group HL_30068.2
Basepair signature:
|
2.12 | -378.78 | 3 | 2 |
|
| 57 |
Motif group HL_04259.3
Basepair signature:
|
1.77 | -206.83 | 4 | 3 |
GNRA with extra cWW |
| 58 |
Motif group HL_71391.1
Basepair signature:
|
1.77 | -595.64 | 3 | 2 |
|
| 59 |
Motif group HL_00914.1
Basepair signature:
|
1.77 | -1090.39 | 5 | 3 |
|
| 60 |
Motif group HL_60914.1
Basepair signature:
|
1.77 | -1440.06 | 5 | 3 |
|
| 61 |
Motif group HL_19210.3
Basepair signature:
|
1.77 | -4540.05 | 6 | 6 |
|
| 62 |
Motif group HL_02887.3
Basepair signature:
|
1.41 | -142.70 | 6 | 5 |
T-loop with 3 stacked bulged bases |
| 63 |
Motif group HL_20167.2
Basepair signature:
|
1.41 | -143.72 | 4 | 4 |
|
| 64 |
Motif group HL_41464.2
Basepair signature:
|
1.41 | -178.93 | 5 | 4 |
|
| 65 |
Motif group HL_89567.2
Basepair signature:
|
1.41 | -244.91 | 4 | 3 |
|
| 66 |
Motif group HL_77082.1
Basepair signature:
|
1.41 | -285.33 | 4 | 3 |
Pseudoknot geometry |
| 67 |
Motif group HL_18978.1
Basepair signature:
|
1.41 | -466.93 | 7 | 6 |
|
| 68 |
Motif group HL_47787.2
Basepair signature:
|
1.41 | -468.60 | 3 | 2 |
|
| 69 |
Motif group HL_47854.1
Basepair signature:
|
1.41 | -568.42 | 5 | 4 |
|
| 70 |
Motif group HL_66103.1
Basepair signature:
|
1.41 | -804.77 | 4 | 3 |
|
| 71 |
Motif group HL_26631.1
Basepair signature:
|
1.41 | -1955.03 | 4 | 3 |
|
| 72 |
Motif group HL_85367.2
Basepair signature:
|
1.41 | -4190.08 | 5 | 4 |
|
| 73 |
Motif group HL_61996.2
Basepair signature:
|
1.06 | -159.21 | 5 | 4 |
|
| 74 |
Motif group HL_01609.3
Basepair signature:
|
1.06 | -178.48 | 4 | 3 |
T-loop with 2 bulged bases not stacked |
| 75 |
Motif group HL_04171.7
Basepair signature:
|
1.06 | -213.99 | 7 | 6 |
|
| 76 |
Motif group HL_27483.1
Basepair signature:
|
1.06 | -609.51 | 5 | 3 |
|
| 77 |
Motif group HL_25061.1
Basepair signature:
|
1.06 | -620.67 | 6 | 5 |
|
| 78 |
Motif group HL_33983.1
Basepair signature:
|
1.06 | -696.46 | 5 | 4 |
|
| 79 |
Motif group HL_27670.2
Basepair signature:
|
1.06 | -812.88 | 4 | 4 |
T-loop with unstacked turn |
| 80 |
Motif group HL_02817.2
Basepair signature:
|
1.06 | -1053.28 | 4 | 3 |
|
| 81 |
Motif group HL_85993.1
Basepair signature:
|
1.06 | -2598.49 | 5 | 4 |
|
| 82 |
Motif group HL_38046.1
Basepair signature:
|
1.06 | -4165.00 | 6 | 4 |
|
| 83 |
Motif group HL_78197.1
Basepair signature:
|
1.06 | -6065.08 | 4 | 3 |
|
| 84 |
Motif group HL_36335.1
Basepair signature:
|
0.71 | -182.43 | 6 | 5 |
|
| 85 |
Motif group HL_18565.1
Basepair signature:
|
0.71 | -251.38 | 5 | 4 |
|
| 86 |
Motif group HL_81538.2
Basepair signature:
|
0.71 | -303.45 | 4 | 3 |
GNRA with tandem sheared |
| 87 |
Motif group HL_97917.2
Basepair signature:
|
0.71 | -333.45 | 4 | 3 |
|
| 88 |
Motif group HL_32392.1
Basepair signature:
|
0.71 | -959.51 | 5 | 3 |
|
| 89 |
Motif group HL_31585.4
Basepair signature:
|
0.71 | -996.35 | 3 | 3 |
Purine riboswitch |
| 90 |
Motif group HL_42998.2
Basepair signature:
|
0.71 | -5859.00 | 4 | 3 |
|
| 91 |
Motif group HL_20743.5
Basepair signature:
|
0.35 | -150.65 | 5 | 4 |
|
| 92 |
Motif group HL_93438.2
Basepair signature:
|
0.35 | -150.68 | 5 | 5 |
|
| 93 |
Motif group HL_86769.4
Basepair signature:
|
0.35 | -155.39 | 4 | 3 |
|
| 94 |
Motif group HL_73266.9
Basepair signature:
|
0.35 | -167.29 | 5 | 4 |
|
| 95 |
Motif group HL_81545.2
Basepair signature:
|
0.35 | -168.48 | 5 | 5 |
|
| 96 |
Motif group HL_57863.1
Basepair signature:
|
0.35 | -175.91 | 6 | 5 |
G-quadruplex fragment |
| 97 |
Motif group HL_18423.1
Basepair signature:
|
0.35 | -182.44 | 7 | 6 |
|
| 98 |
Motif group HL_78347.4
Basepair signature:
|
0.35 | -198.86 | 4 | 4 |
|
| 99 |
Motif group HL_60266.1
Basepair signature:
|
0.35 | -200.92 | 7 | 6 |
|
| 100 |
Motif group HL_66853.7
Basepair signature:
|
0.35 | -208.72 | 6 | 5 |
|
| 101 |
Motif group HL_25847.2
Basepair signature:
|
0.35 | -219.03 | 7 | 6 |
|
| 102 |
Motif group HL_64690.6
Basepair signature:
|
0.35 | -257.96 | 5 | 4 |
|
| 103 |
Motif group HL_88205.2
Basepair signature:
|
0.35 | -419.59 | 5 | 5 |
|
| 104 |
Motif group HL_56676.1
Basepair signature:
|
0.35 | -715.95 | 3 | 2 |
|
| 105 |
Motif group HL_25967.2
Basepair signature:
|
0.35 | -720.48 | 5 | 4 |
|
| 106 |
Motif group HL_37369.2
Basepair signature:
|
0.35 | -740.84 | 4 | 3 |
|
| 107 |
Motif group HL_86883.1
Basepair signature:
|
0.35 | -1713.04 | 4 | 3 |
|
| 108 |
Motif group HL_30680.3
Basepair signature:
|
0.35 | -3023.01 | 4 | 3 |
Pseudoknot geometry |
| 109 |
Motif group HL_97733.1
Basepair signature:
|
0.35 | -3713.10 | 8 | 6 |
|
| 110 |
Motif group HL_80008.1
Basepair signature:
|
0.35 | -4040.85 | 5 | 4 |
|
| 111 |
Motif group HL_83632.1
Basepair signature:
|
0.35 | -4375.61 | 5 | 4 |
tRNA anticodon loop |
| 112 |
Motif group HL_29762.1
Basepair signature:
|
0.35 | -4419.49 | 7 | 6 |
|
| 113 |
Motif group HL_38808.1
Basepair signature:
|
0.35 | -4702.27 | 5 | 4 |
|
| 114 |
Motif group HL_99040.1
Basepair signature:
|
0.35 | -5556.11 | 5 | 4 |
|
| 115 |
Motif group HL_28791.1
Basepair signature:
|
0.35 | -6659.89 | 5 | 4 |
|
| 116 |
Motif group HL_86012.1
Basepair signature:
|
0.00 | -141.66 | 6 | 5 |
T-loop with unstacked turn |
| 117 |
Motif group HL_26934.1
Basepair signature:
|
0.00 | -142.95 | 5 | 4 |
|
| 118 |
Motif group HL_83808.4
Basepair signature:
|
0.00 | -164.29 | 8 | 6 |
Pseudoknot |
| 119 |
Motif group HL_41543.1
Basepair signature:
|
0.00 | -170.69 | 8 | 7 |
|
| 120 |
Motif group HL_41902.1
Basepair signature:
|
0.00 | -171.55 | 8 | 7 |
|
| 121 |
Motif group HL_74379.3
Basepair signature:
|
0.00 | -178.87 | 8 | 7 |
|
| 122 |
Motif group HL_98864.1
Basepair signature:
|
0.00 | -181.24 | 6 | 5 |
T-loop with unstacked turn |
| 123 |
Motif group HL_90620.1
Basepair signature:
|
0.00 | -189.84 | 7 | 6 |
|
| 124 |
Motif group HL_68257.1
Basepair signature:
|
0.00 | -191.81 | 7 | 6 |
|
| 125 |
Motif group HL_28252.8
Basepair signature:
|
0.00 | -192.26 | 4 | 4 |
T-loop with 2 stacked bulged bases |
| 126 |
Motif group HL_67079.1
Basepair signature:
|
0.00 | -192.33 | 7 | 6 |
|
| 127 |
Motif group HL_70658.1
Basepair signature:
|
0.00 | -194.03 | 8 | 8 |
|
| 128 |
Motif group HL_28075.1
Basepair signature:
|
0.00 | -194.97 | 4 | 3 |
|
| 129 |
Motif group HL_01962.2
Basepair signature:
|
0.00 | -203.04 | 7 | 6 |
|
| 130 |
Motif group HL_49941.1
Basepair signature:
|
0.00 | -209.62 | 8 | 7 |
tRNA D-loop |
| 131 |
Motif group HL_04642.1
Basepair signature:
|
0.00 | -212.01 | 7 | 6 |
tRNA D-loop |
| 132 |
Motif group HL_07583.1
Basepair signature:
|
0.00 | -218.70 | 9 | 8 |
|
| 133 |
Motif group HL_86109.1
Basepair signature:
|
0.00 | -219.24 | 8 | 8 |
|
| 134 |
Motif group HL_84847.1
Basepair signature:
|
0.00 | -224.07 | 9 | 9 |
|
| 135 |
Motif group HL_40252.4
Basepair signature:
|
0.00 | -224.71 | 7 | 6 |
|
| 136 |
Motif group HL_53504.3
Basepair signature:
|
0.00 | -226.69 | 6 | 5 |
|
| 137 |
Motif group HL_81205.3
Basepair signature:
|
0.00 | -226.96 | 9 | 9 |
|
| 138 |
Motif group HL_23509.1
Basepair signature:
|
0.00 | -233.37 | 8 | 7 |
|
| 139 |
Motif group HL_16991.1
Basepair signature:
|
0.00 | -234.60 | 8 | 7 |
G-quadruplex fragment |
| 140 |
Motif group HL_74055.2
Basepair signature:
|
0.00 | -235.11 | 10 | 10 |
|
| 141 |
Motif group HL_08602.1
Basepair signature:
|
0.00 | -236.96 | 10 | 8 |
|
| 142 |
Motif group HL_75293.5
Basepair signature:
|
0.00 | -240.10 | 5 | 5 |
|
| 143 |
Motif group HL_42046.2
Basepair signature:
|
0.00 | -243.86 | 5 | 4 |
|
| 144 |
Motif group HL_98252.1
Basepair signature:
|
0.00 | -250.17 | 8 | 7 |
|
| 145 |
Motif group HL_50537.6
Basepair signature:
|
0.00 | -260.51 | 5 | 4 |
tRNA anticodon loop with synthetase |
| 146 |
Motif group HL_73247.1
Basepair signature:
|
0.00 | -260.71 | 11 | 10 |
Pseudoknot geometry |
| 147 |
Motif group HL_68767.1
Basepair signature:
|
0.00 | -276.53 | 9 | 8 |
tRNA D-loop |
| 148 |
Motif group HL_98870.1
Basepair signature:
|
0.00 | -281.93 | 11 | 10 |
|
| 149 |
Motif group HL_45175.1
Basepair signature:
|
0.00 | -294.31 | 6 | 5 |
tRNA D-loop |
| 150 |
Motif group HL_14757.1
Basepair signature:
|
0.00 | -296.90 | 13 | 13 |
|
| 151 |
Motif group HL_91641.1
Basepair signature:
|
0.00 | -300.03 | 12 | 12 |
|
| 152 |
Motif group HL_13971.1
Basepair signature:
|
0.00 | -316.73 | 10 | 10 |
|
| 153 |
Motif group HL_73255.1
Basepair signature:
|
0.00 | -346.70 | 7 | 6 |
|
| 154 |
Motif group HL_37344.1
Basepair signature:
|
0.00 | -346.84 | 5 | 4 |
|
| 155 |
Motif group HL_08100.1
Basepair signature:
|
0.00 | -384.57 | 5 | 3 |
|
| 156 |
Motif group HL_51921.1
Basepair signature:
|
0.00 | -402.14 | 16 | 16 |
|
| 157 |
Motif group HL_21372.1
Basepair signature:
|
0.00 | -445.32 | 6 | 5 |
|
| 158 |
Motif group HL_92488.1
Basepair signature:
|
0.00 | -454.30 | 11 | 11 |
|
| 159 |
Motif group HL_06226.4
Basepair signature:
|
0.00 | -474.66 | 6 | 6 |
|
| 160 |
Motif group HL_91939.2
Basepair signature:
|
0.00 | -479.36 | 7 | 6 |
|
| 161 |
Motif group HL_89881.5
Basepair signature:
|
0.00 | -492.58 | 7 | 6 |
|
| 162 |
Motif group HL_02483.1
Basepair signature:
|
0.00 | -501.11 | 8 | 7 |
|
| 163 |
Motif group HL_97756.2
Basepair signature:
|
0.00 | -501.87 | 11 | 10 |
|
| 164 |
Motif group HL_87463.1
Basepair signature:
|
0.00 | -503.06 | 6 | 6 |
|
| 165 |
Motif group HL_07480.2
Basepair signature:
|
0.00 | -509.48 | 8 | 6 |
|
| 166 |
Motif group HL_45785.1
Basepair signature:
|
0.00 | -514.45 | 8 | 8 |
|
| 167 |
Motif group HL_05304.3
Basepair signature:
|
0.00 | -519.66 | 8 | 8 |
|
| 168 |
Motif group HL_99748.1
Basepair signature:
|
0.00 | -523.58 | 6 | 4 |
Other HL |
| 169 |
Motif group HL_02581.1
Basepair signature:
|
0.00 | -536.96 | 11 | 10 |
tRNA D-loop |
| 170 |
Motif group HL_04641.1
Basepair signature:
|
0.00 | -556.07 | 6 | 5 |
|
| 171 |
Motif group HL_58224.1
Basepair signature:
|
0.00 | -556.16 | 7 | 6 |
|
| 172 |
Motif group HL_23010.1
Basepair signature:
|
0.00 | -563.17 | 7 | 6 |
|
| 173 |
Motif group HL_15802.1
Basepair signature:
|
0.00 | -570.14 | 7 | 6 |
|
| 174 |
Motif group HL_34964.1
Basepair signature:
|
0.00 | -623.92 | 7 | 7 |
|
| 175 |
Motif group HL_53454.2
Basepair signature:
|
0.00 | -650.00 | 6 | 5 |
|
| 176 |
Motif group HL_06059.6
Basepair signature:
|
0.00 | -714.13 | 4 | 4 |
tRNA anticodon loop |
| 177 |
Motif group HL_10453.3
Basepair signature:
|
0.00 | -834.54 | 4 | 3 |
tRNA anticodon loop |
| 178 |
Motif group HL_93383.1
Basepair signature:
|
0.00 | -1327.39 | 5 | 4 |
|
| 179 |
Motif group HL_80599.2
Basepair signature:
|
0.00 | -1481.78 | 6 | 5 |
|
| 180 |
Motif group HL_32735.2
Basepair signature:
|
0.00 | -1596.21 | 5 | 4 |
|
| 181 |
Motif group HL_94980.1
Basepair signature:
|
0.00 | -1624.79 | 5 | 3 |
|
| 182 |
Motif group HL_65313.1
Basepair signature:
|
0.00 | -1715.47 | 6 | 4 |
|
| 183 |
Motif group HL_12870.1
Basepair signature:
|
0.00 | -1937.81 | 9 | 8 |
|
| 184 |
Motif group HL_59330.1
Basepair signature:
|
0.00 | -2056.84 | 7 | 5 |
|
| 185 |
Motif group HL_81100.2
Basepair signature:
|
0.00 | -2182.47 | 4 | 4 |
|
| 186 |
Motif group HL_51447.1
Basepair signature:
|
0.00 | -2710.30 | 5 | 4 |
|
| 187 |
Motif group HL_93616.2
Basepair signature:
|
0.00 | -2806.86 | 8 | 7 |
tRNA D-loop |
| 188 |
Motif group HL_85434.1
Basepair signature:
|
0.00 | -2892.37 | 7 | 6 |
|
| 189 |
Motif group HL_10456.1
Basepair signature:
|
0.00 | -3206.11 | 13 | 13 |
|
| 190 |
Motif group HL_66482.1
Basepair signature:
|
0.00 | -3250.18 | 13 | 13 |
|
| 191 |
Motif group HL_99769.3
Basepair signature:
|
0.00 | -3251.43 | 7 | 7 |
|
| 192 |
Motif group HL_29129.3
Basepair signature:
|
0.00 | -3259.66 | 7 | 6 |
|
| 193 |
Motif group HL_33074.4
Basepair signature:
|
0.00 | -3342.40 | 8 | 8 |
U1 small nuclear ribonucleoprotein A binding hairpin |
| 194 |
Motif group HL_11542.1
Basepair signature:
|
0.00 | -3371.99 | 9 | 8 |
|
| 195 |
Motif group HL_89346.1
Basepair signature:
|
0.00 | -3399.97 | 14 | 14 |
|
| 196 |
Motif group HL_77600.2
Basepair signature:
|
0.00 | -3538.26 | 4 | 4 |
|
| 197 |
Motif group HL_59564.1
Basepair signature:
|
0.00 | -3737.69 | 16 | 15 |
|
| 198 |
Motif group HL_00317.1
Basepair signature:
|
0.00 | -3756.14 | 16 | 15 |
|
| 199 |
Motif group HL_99324.1
Basepair signature:
|
0.00 | -3791.49 | 12 | 12 |
|
| 200 |
Motif group HL_85461.1
Basepair signature:
|
0.00 | -3861.40 | 15 | 15 |
|
| 201 |
Motif group HL_20751.2
Basepair signature:
|
0.00 | -3869.07 | 9 | 9 |
|
| 202 |
Motif group HL_60293.1
Basepair signature:
|
0.00 | -3886.37 | 17 | 17 |
G-quadruplex |
| 203 |
Motif group HL_50851.1
Basepair signature:
|
0.00 | -3904.75 | 9 | 9 |
G-quadruplex fragment |
| 204 |
Motif group HL_21400.1
Basepair signature:
|
0.00 | -3981.32 | 19 | 18 |
G-quadruplex |
| 205 |
Motif group HL_12758.3
Basepair signature:
|
0.00 | -4014.58 | 20 | 20 |
G-quadruplex |
| 206 |
Motif group HL_38649.1
Basepair signature:
|
0.00 | -4019.54 | 7 | 7 |
|
| 207 |
Motif group HL_35354.1
Basepair signature:
|
0.00 | -4056.36 | 20 | 19 |
|
| 208 |
Motif group HL_72628.1
Basepair signature:
|
0.00 | -4058.13 | 5 | 4 |
|
| 209 |
Motif group HL_23115.1
Basepair signature:
|
0.00 | -4162.62 | 8 | 7 |
tRNA D-loop |
| 210 |
Motif group HL_55436.1
Basepair signature:
|
0.00 | -4183.79 | 6 | 5 |
|
| 211 |
Motif group HL_04725.1
Basepair signature:
|
0.00 | -4186.01 | 8 | 8 |
|
| 212 |
Motif group HL_73183.1
Basepair signature:
|
0.00 | -4211.89 | 10 | 10 |
Pseudoknot geometry with G-bulge |
| 213 |
Motif group HL_08510.1
Basepair signature:
|
0.00 | -4279.98 | 7 | 6 |
|
| 214 |
Motif group HL_88558.1
Basepair signature:
|
0.00 | -4292.38 | 8 | 7 |
|
| 215 |
Motif group HL_91503.7
Basepair signature:
|
0.00 | -4293.10 | 7 | 6 |
|
| 216 |
Motif group HL_67407.5
Basepair signature:
|
0.00 | -4315.75 | 7 | 6 |
|
| 217 |
Motif group HL_07903.1
Basepair signature:
|
0.00 | -4340.68 | 10 | 10 |
|
| 218 |
Motif group HL_31581.6
Basepair signature:
|
0.00 | -4354.04 | 8 | 8 |
|
| 219 |
Motif group HL_80411.1
Basepair signature:
|
0.00 | -4374.13 | 8 | 7 |
tRNA D-loop |
| 220 |
Motif group HL_63355.1
Basepair signature:
|
0.00 | -4390.02 | 9 | 9 |
|
| 221 |
Motif group HL_73916.1
Basepair signature:
|
0.00 | -4403.60 | 35 | 35 |
|
| 222 |
Motif group HL_81312.1
Basepair signature:
|
0.00 | -4458.57 | 8 | 7 |
|
| 223 |
Motif group HL_50779.4
Basepair signature:
|
0.00 | -4497.20 | 6 | 5 |
|
| 224 |
Motif group HL_88364.2
Basepair signature:
|
0.00 | -4602.84 | 12 | 12 |
|
| 225 |
Motif group HL_55305.1
Basepair signature:
|
0.00 | -4616.78 | 8 | 7 |
|
| 226 |
Motif group HL_93135.1
Basepair signature:
|
0.00 | -4642.04 | 7 | 7 |
Pseudoknot |
| 227 |
Motif group HL_15118.1
Basepair signature:
|
0.00 | -4676.96 | 8 | 8 |
|
| 228 |
Motif group HL_01255.1
Basepair signature:
|
0.00 | -4719.18 | 8 | 7 |
|
| 229 |
Motif group HL_94376.1
Basepair signature:
|
0.00 | -4730.96 | 7 | 6 |
Pseudoknot geometry |
| 230 |
Motif group HL_16398.2
Basepair signature:
|
0.00 | -4908.27 | 8 | 8 |
|
| 231 |
Motif group HL_69139.1
Basepair signature:
|
0.00 | -5005.63 | 8 | 7 |
|
| 232 |
Motif group HL_24792.1
Basepair signature:
|
0.00 | -5030.69 | 7 | 6 |
|
| 233 |
Motif group HL_70751.1
Basepair signature:
|
0.00 | -5064.86 | 7 | 6 |
|
| 234 |
Motif group HL_47732.1
Basepair signature:
|
0.00 | -5073.27 | 8 | 7 |
|
| 235 |
Motif group HL_78284.1
Basepair signature:
|
0.00 | -5076.28 | 8 | 7 |
|
| 236 |
Motif group HL_35677.3
Basepair signature:
|
0.00 | -5147.72 | 6 | 5 |
|
| 237 |
Motif group HL_64292.1
Basepair signature:
|
0.00 | -5174.84 | 12 | 11 |
|
| 238 |
Motif group HL_36684.4
Basepair signature:
|
0.00 | -5215.15 | 6 | 6 |
|
| 239 |
Motif group HL_29958.1
Basepair signature:
|
0.00 | -5283.58 | 10 | 9 |
|
| 240 |
Motif group HL_50418.1
Basepair signature:
|
0.00 | -5320.94 | 6 | 6 |
|
| 241 |
Motif group HL_74292.1
Basepair signature:
|
0.00 | -5352.97 | 6 | 5 |
|
| 242 |
Motif group HL_68572.1
Basepair signature:
|
0.00 | -5398.52 | 9 | 9 |
|
| 243 |
Motif group HL_80362.1
Basepair signature:
|
0.00 | -5830.27 | 6 | 5 |
|
| 244 |
Motif group HL_99867.1
Basepair signature:
|
0.00 | -5955.63 | 6 | 5 |
|
| 245 |
Motif group HL_20781.1
Basepair signature:
|
0.00 | -6165.57 | 7 | 6 |
|
| 246 |
Motif group HL_67667.2
Basepair signature:
|
0.00 | -6516.60 | 6 | 5 |
|
| 247 |
Motif group HL_22622.1
Basepair signature:
|
0.00 | -6548.93 | 5 | 4 |
|
| 248 |
Motif group HL_80241.1
Basepair signature:
|
0.00 | -6678.76 | 5 | 4 |
|
| 249 |
Motif group HL_09452.1
Basepair signature:
|
0.00 | -7003.62 | 5 | 5 |
|
| 250 |
Motif group HL_58539.1
Basepair signature:
|
0.00 | -7210.55 | 12 | 11 |
|
| 251 |
Motif group HL_97983.1
Basepair signature:
|
0.00 | -7710.97 | 7 | 6 |
|
| 252 |
Motif group HL_07951.3
Basepair signature:
|
0.00 | -9999.00 | 6 | 4 |
tRNA D-loop |
| 253 |
Motif group HL_09260.2
Basepair signature:
|
0.00 | -9999.00 | 8 | 7 |
tRNA D-loop |