JAR3D
Query RF03087-CCF-3.98 completed
Run on Motif Atlas Version
using the Rfam secondary structure. Run with the CaCoFold secondary structure.
Rfam family RF03087 maps to these 30 chains: 9ISV|1|A, 9J3R|1|A, 9J3R|1|B, 9J3R|1|C, 9J3R|1|D, 9J3T|1|A, 9J3T|1|B, 9J3T|1|C, 9J3T|1|D, 9J3T|1|E, 9J3T|1|F, 9J3T|1|G, 9J3T|1|H, 9MM6|1|A, 9MM6|1|E, 9MM6|1|I, 9MM6|1|M, 9MM6|1|Q, 9MM6|1|U, 9MM6|1|Y, 9MM6|1|c, 9MME|1|U, 9MME|1|Y, 9MME|1|c, 9MME|1|g, 9MME|1|k, 9MME|1|o, 9MME|1|s, 9MME|1|w, 9MMG|1|c See more about them at RNA 3D Hub by filtering on the chain or the Rfam family.
Loop 27 Hairpin loop
Column numbers: 465-467 - View nucleotides in PDB file(s)
Scored sequences and counts
GAA 45
CGG 39
UGU 37
CUG 26
CAG 24
UAA 10
GCA 9
AGU 8
CAA 8
GGU 8
CGA 7
GUG 7
UUA 6
AAG 4
ACG 4
AGA 4
AGG 4
GAG 4
GUA 4
UUU 4
ACU 3
UUG 3
CGU 2
GGA 2
UAC 2
AAC 1
AUU 1
CAC 1
CUA 1
CUC 1
GAC 1
GAU 1
GUC 1
UCU 1
Omitted sequenced and counts
--- 7
Click on headings to reorder table
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group HL_78677.1
Basepair signature:
|
17.67 | -14.35 | 3 | 2 |
|
| 2 |
Motif group HL_48778.2
Basepair signature:
|
17.67 | -28.96 | 1 | 1 |
Mini UNCG |
| 3 |
Motif group HL_32346.4
Basepair signature:
|
14.13 | -20.31 | 2 | 1 |
|
| 4 |
Motif group HL_70782.2
Basepair signature:
|
12.01 | -28.48 | 3 | 2 |
|
| 5 |
Motif group HL_35941.1
Basepair signature:
|
0.00 | -52.17 | 3 | 2 |
|
| 6 |
Motif group HL_56334.1
Basepair signature:
|
0.00 | -56.85 | 2 | 2 |
Mini UNCG |
| 7 |
Motif group HL_86870.2
Basepair signature:
|
0.00 | -92.12 | 3 | 2 |
|
| 8 |
Motif group HL_56131.2
Basepair signature:
|
0.00 | -97.32 | 3 | 1 |
|
| 9 |
Motif group HL_38901.2
Basepair signature:
|
0.00 | -101.27 | 3 | 2 |
tRNA D-loop |
| 10 |
Motif group HL_04783.2
Basepair signature:
|
0.00 | -103.69 | 3 | 2 |
|
| 11 |
Motif group HL_46501.1
Basepair signature:
|
0.00 | -108.42 | 3 | 2 |
|
| 12 |
Motif group HL_26631.1
Basepair signature:
|
0.00 | -111.98 | 3 | 2 |
|
| 13 |
Motif group HL_13189.1
Basepair signature:
|
0.00 | -135.88 | 3 | 2 |
|
| 14 |
Motif group HL_80709.3
Basepair signature:
|
0.00 | -137.33 | 3 | 2 |
|
| 15 |
Motif group HL_82710.2
Basepair signature:
|
0.00 | -143.73 | 4 | 3 |
|
| 16 |
Motif group HL_53890.2
Basepair signature:
|
0.00 | -144.22 | 3 | 3 |
|
| 17 |
Motif group HL_43517.1
Basepair signature:
|
0.00 | -149.18 | 4 | 3 |
|
| 18 |
Motif group HL_57875.1
Basepair signature:
|
0.00 | -152.82 | 3 | 3 |
|
| 19 |
Motif group HL_07886.3
Basepair signature:
|
0.00 | -154.80 | 4 | 3 |
|
| 20 |
Motif group HL_13963.3
Basepair signature:
|
0.00 | -157.42 | 4 | 3 |
|
| 21 |
Motif group HL_71391.1
Basepair signature:
|
0.00 | -163.19 | 4 | 3 |
|
| 22 |
Motif group HL_32392.1
Basepair signature:
|
0.00 | -164.31 | 4 | 2 |
|
| 23 |
Motif group HL_89199.2
Basepair signature:
|
0.00 | -164.33 | 3 | 3 |
Mini UNCG |
| 24 |
Motif group HL_20811.4
Basepair signature:
|
0.00 | -166.29 | 3 | 3 |
tRNA D-loop |
| 25 |
Motif group HL_27483.1
Basepair signature:
|
0.00 | -166.60 | 2 | 1 |
|
| 26 |
Motif group HL_26934.1
Basepair signature:
|
0.00 | -173.79 | 6 | 5 |
|
| 27 |
Motif group HL_62934.1
Basepair signature:
|
0.00 | -174.18 | 4 | 4 |
|
| 28 |
Motif group HL_22584.6
Basepair signature:
|
0.00 | -177.59 | 3 | 3 |
Fab BL3-6 binding hairpin with tSW |
| 29 |
Motif group HL_86012.1
Basepair signature:
|
0.00 | -177.90 | 7 | 6 |
T-loop with unstacked turn |
| 30 |
Motif group HL_49922.4
Basepair signature:
|
0.00 | -178.89 | 4 | 3 |
|
| 31 |
Motif group HL_29966.1
Basepair signature:
|
0.00 | -179.32 | 5 | 3 |
|
| 32 |
Motif group HL_65313.1
Basepair signature:
|
0.00 | -187.58 | 4 | 4 |
|
| 33 |
Motif group HL_34617.5
Basepair signature:
|
0.00 | -190.89 | 3 | 3 |
UNCG |
| 34 |
Motif group HL_50318.1
Basepair signature:
|
0.00 | -191.95 | 5 | 5 |
|
| 35 |
Motif group HL_50006.2
Basepair signature:
|
0.00 | -192.98 | 3 | 3 |
|
| 36 |
Motif group HL_57176.2
Basepair signature:
|
0.00 | -194.81 | 3 | 3 |
Pseudoknot geometry with 3' bulge |
| 37 |
Motif group HL_37369.2
Basepair signature:
|
0.00 | -200.61 | 5 | 4 |
|
| 38 |
Motif group HL_15802.1
Basepair signature:
|
0.00 | -203.08 | 6 | 6 |
|
| 39 |
Motif group HL_50860.2
Basepair signature:
|
0.00 | -206.13 | 6 | 6 |
|
| 40 |
Motif group HL_02887.3
Basepair signature:
|
0.00 | -206.93 | 7 | 7 |
T-loop with 3 stacked bulged bases |
| 41 |
Motif group HL_83808.4
Basepair signature:
|
0.00 | -206.98 | 7 | 6 |
Pseudoknot |
| 42 |
Motif group HL_25967.2
Basepair signature:
|
0.00 | -207.40 | 5 | 4 |
|
| 43 |
Motif group HL_86883.1
Basepair signature:
|
0.00 | -207.85 | 4 | 3 |
|
| 44 |
Motif group HL_80922.2
Basepair signature:
|
0.00 | -210.27 | 4 | 4 |
|
| 45 |
Motif group HL_66103.1
Basepair signature:
|
0.00 | -211.42 | 4 | 4 |
|
| 46 |
Motif group HL_18978.1
Basepair signature:
|
0.00 | -212.40 | 7 | 7 |
|
| 47 |
Motif group HL_42046.2
Basepair signature:
|
0.00 | -213.96 | 5 | 4 |
|
| 48 |
Motif group HL_48417.5
Basepair signature:
|
0.00 | -222.64 | 3 | 2 |
|
| 49 |
Motif group HL_20743.5
Basepair signature:
|
0.00 | -223.27 | 6 | 6 |
|
| 50 |
Motif group HL_08100.1
Basepair signature:
|
0.00 | -228.92 | 4 | 4 |
|
| 51 |
Motif group HL_20167.2
Basepair signature:
|
0.00 | -231.60 | 6 | 6 |
|
| 52 |
Motif group HL_87954.2
Basepair signature:
|
0.00 | -232.55 | 4 | 4 |
|
| 53 |
Motif group HL_13529.1
Basepair signature:
|
0.00 | -233.20 | 5 | 4 |
|
| 54 |
Motif group HL_10540.1
Basepair signature:
|
0.00 | -234.54 | 5 | 4 |
|
| 55 |
Motif group HL_93438.2
Basepair signature:
|
0.00 | -235.34 | 7 | 7 |
|
| 56 |
Motif group HL_81545.2
Basepair signature:
|
0.00 | -240.77 | 7 | 7 |
|
| 57 |
Motif group HL_61996.2
Basepair signature:
|
0.00 | -243.16 | 6 | 6 |
|
| 58 |
Motif group HL_80362.1
Basepair signature:
|
0.00 | -246.25 | 7 | 6 |
|
| 59 |
Motif group HL_41543.1
Basepair signature:
|
0.00 | -246.66 | 9 | 8 |
|
| 60 |
Motif group HL_09452.1
Basepair signature:
|
0.00 | -249.28 | 6 | 5 |
|
| 61 |
Motif group HL_89567.2
Basepair signature:
|
0.00 | -251.55 | 5 | 5 |
|
| 62 |
Motif group HL_07480.2
Basepair signature:
|
0.00 | -252.14 | 9 | 8 |
|
| 63 |
Motif group HL_87553.1
Basepair signature:
|
0.00 | -253.00 | 5 | 4 |
|
| 64 |
Motif group HL_49941.1
Basepair signature:
|
0.00 | -255.03 | 8 | 8 |
tRNA D-loop |
| 65 |
Motif group HL_76094.1
Basepair signature:
|
0.00 | -255.08 | 3 | 2 |
|
| 66 |
Motif group HL_73266.9
Basepair signature:
|
0.00 | -255.26 | 6 | 6 |
|
| 67 |
Motif group HL_01609.3
Basepair signature:
|
0.00 | -256.84 | 5 | 5 |
T-loop with 2 bulged bases not stacked |
| 68 |
Motif group HL_06226.4
Basepair signature:
|
0.00 | -257.48 | 8 | 8 |
|
| 69 |
Motif group HL_41902.1
Basepair signature:
|
0.00 | -257.63 | 10 | 9 |
|
| 70 |
Motif group HL_74379.3
Basepair signature:
|
0.00 | -267.35 | 9 | 9 |
|
| 71 |
Motif group HL_18423.1
Basepair signature:
|
0.00 | -271.72 | 8 | 8 |
|
| 72 |
Motif group HL_25847.2
Basepair signature:
|
0.00 | -272.06 | 8 | 8 |
|
| 73 |
Motif group HL_28075.1
Basepair signature:
|
0.00 | -272.93 | 5 | 5 |
|
| 74 |
Motif group HL_91939.2
Basepair signature:
|
0.00 | -275.28 | 9 | 8 |
|
| 75 |
Motif group HL_86769.4
Basepair signature:
|
0.00 | -277.71 | 5 | 5 |
|
| 76 |
Motif group HL_67079.1
Basepair signature:
|
0.00 | -277.77 | 8 | 8 |
|
| 77 |
Motif group HL_90620.1
Basepair signature:
|
0.00 | -278.57 | 9 | 8 |
|
| 78 |
Motif group HL_36335.1
Basepair signature:
|
0.00 | -278.58 | 8 | 7 |
|
| 79 |
Motif group HL_28252.8
Basepair signature:
|
0.00 | -282.68 | 6 | 6 |
T-loop with 2 stacked bulged bases |
| 80 |
Motif group HL_88205.2
Basepair signature:
|
0.00 | -285.31 | 7 | 7 |
|
| 81 |
Motif group HL_77436.5
Basepair signature:
|
0.00 | -286.12 | 4 | 4 |
T-loop related |
| 82 |
Motif group HL_01962.2
Basepair signature:
|
0.00 | -286.59 | 8 | 8 |
|
| 83 |
Motif group HL_40252.4
Basepair signature:
|
0.00 | -294.93 | 8 | 8 |
|
| 84 |
Motif group HL_41464.2
Basepair signature:
|
0.00 | -297.97 | 7 | 6 |
|
| 85 |
Motif group HL_13971.1
Basepair signature:
|
0.00 | -299.28 | 11 | 11 |
|
| 86 |
Motif group HL_78347.4
Basepair signature:
|
0.00 | -299.81 | 4 | 3 |
|
| 87 |
Motif group HL_86109.1
Basepair signature:
|
0.00 | -300.02 | 10 | 10 |
|
| 88 |
Motif group HL_60266.1
Basepair signature:
|
0.00 | -301.91 | 9 | 8 |
|
| 89 |
Motif group HL_24792.1
Basepair signature:
|
0.00 | -302.15 | 8 | 7 |
|
| 90 |
Motif group HL_34964.1
Basepair signature:
|
0.00 | -302.35 | 8 | 8 |
|
| 91 |
Motif group HL_37824.7
Basepair signature:
|
0.00 | -304.67 | 3 | 3 |
GNRA |
| 92 |
Motif group HL_70658.1
Basepair signature:
|
0.00 | -305.68 | 10 | 10 |
|
| 93 |
Motif group HL_08602.1
Basepair signature:
|
0.00 | -314.08 | 10 | 10 |
|
| 94 |
Motif group HL_04171.7
Basepair signature:
|
0.00 | -320.80 | 8 | 8 |
|
| 95 |
Motif group HL_81205.3
Basepair signature:
|
0.00 | -323.51 | 11 | 11 |
|
| 96 |
Motif group HL_68767.1
Basepair signature:
|
0.00 | -325.44 | 10 | 10 |
tRNA D-loop |
| 97 |
Motif group HL_53504.3
Basepair signature:
|
0.00 | -326.31 | 8 | 7 |
|
| 98 |
Motif group HL_74055.2
Basepair signature:
|
0.00 | -329.49 | 12 | 12 |
|
| 99 |
Motif group HL_04259.3
Basepair signature:
|
0.00 | -332.38 | 5 | 5 |
GNRA with extra cWW |
| 100 |
Motif group HL_84847.1
Basepair signature:
|
0.00 | -339.12 | 11 | 11 |
|
| 101 |
Motif group HL_07583.1
Basepair signature:
|
0.00 | -343.06 | 11 | 10 |
|
| 102 |
Motif group HL_02581.1
Basepair signature:
|
0.00 | -363.41 | 12 | 12 |
tRNA D-loop |
| 103 |
Motif group HL_14757.1
Basepair signature:
|
0.00 | -377.88 | 15 | 15 |
|
| 104 |
Motif group HL_73247.1
Basepair signature:
|
0.00 | -389.17 | 12 | 12 |
Pseudoknot geometry |
| 105 |
Motif group HL_98870.1
Basepair signature:
|
0.00 | -393.66 | 12 | 12 |
|
| 106 |
Motif group HL_91641.1
Basepair signature:
|
0.00 | -409.58 | 14 | 14 |
|
| 107 |
Motif group HL_97756.2
Basepair signature:
|
0.00 | -490.43 | 12 | 12 |
|
| 108 |
Motif group HL_92488.1
Basepair signature:
|
0.00 | -632.29 | 13 | 13 |
|
| 109 |
Motif group HL_33074.4
Basepair signature:
|
0.00 | -4043.69 | 9 | 9 |
U1 small nuclear ribonucleoprotein A binding hairpin |
| 110 |
Motif group HL_99324.1
Basepair signature:
|
0.00 | -4068.77 | 14 | 14 |
|
| 111 |
Motif group HL_60293.1
Basepair signature:
|
0.00 | -4092.43 | 19 | 19 |
G-quadruplex |
| 112 |
Motif group HL_21400.1
Basepair signature:
|
0.00 | -4093.71 | 20 | 20 |
G-quadruplex |
| 113 |
Motif group HL_35354.1
Basepair signature:
|
0.00 | -4106.79 | 21 | 21 |
|
| 114 |
Motif group HL_85461.1
Basepair signature:
|
0.00 | -4107.90 | 17 | 17 |
|
| 115 |
Motif group HL_00317.1
Basepair signature:
|
0.00 | -4137.19 | 18 | 17 |
|
| 116 |
Motif group HL_12758.3
Basepair signature:
|
0.00 | -4171.02 | 22 | 22 |
G-quadruplex |
| 117 |
Motif group HL_89346.1
Basepair signature:
|
0.00 | -4176.82 | 16 | 16 |
|
| 118 |
Motif group HL_59564.1
Basepair signature:
|
0.00 | -4178.41 | 18 | 17 |
|
| 119 |
Motif group HL_66482.1
Basepair signature:
|
0.00 | -4238.43 | 15 | 15 |
|
| 120 |
Motif group HL_10456.1
Basepair signature:
|
0.00 | -4249.69 | 15 | 15 |
|
| 121 |
Motif group HL_51921.1
Basepair signature:
|
0.00 | -4386.80 | 18 | 18 |
|
| 122 |
Motif group HL_50851.1
Basepair signature:
|
0.00 | -4460.34 | 9 | 9 |
G-quadruplex fragment |
| 123 |
Motif group HL_73916.1
Basepair signature:
|
0.00 | -4754.06 | 37 | 37 |
|
| 124 |
Motif group HL_04725.1
Basepair signature:
|
0.00 | -4798.16 | 9 | 9 |
|
| 125 |
Motif group HL_31581.6
Basepair signature:
|
0.00 | -5015.39 | 9 | 9 |
|
| 126 |
Motif group HL_07903.1
Basepair signature:
|
0.00 | -5038.75 | 12 | 12 |
|
| 127 |
Motif group HL_63355.1
Basepair signature:
|
0.00 | -5095.47 | 11 | 11 |
|
| 128 |
Motif group HL_88364.2
Basepair signature:
|
0.00 | -5099.17 | 13 | 12 |
|
| 129 |
Motif group HL_89881.5
Basepair signature:
|
0.00 | -5112.35 | 8 | 8 |
|
| 130 |
Motif group HL_16991.1
Basepair signature:
|
0.00 | -5130.20 | 9 | 9 |
G-quadruplex fragment |
| 131 |
Motif group HL_20751.2
Basepair signature:
|
0.00 | -5133.53 | 10 | 10 |
|
| 132 |
Motif group HL_93616.2
Basepair signature:
|
0.00 | -5142.43 | 8 | 8 |
tRNA D-loop |
| 133 |
Motif group HL_23509.1
Basepair signature:
|
0.00 | -5162.82 | 10 | 9 |
|
| 134 |
Motif group HL_02483.1
Basepair signature:
|
0.00 | -5168.35 | 9 | 9 |
|
| 135 |
Motif group HL_73183.1
Basepair signature:
|
0.00 | -5172.37 | 12 | 12 |
Pseudoknot geometry with G-bulge |
| 136 |
Motif group HL_98864.1
Basepair signature:
|
0.00 | -5177.66 | 7 | 7 |
T-loop with unstacked turn |
| 137 |
Motif group HL_67407.5
Basepair signature:
|
0.00 | -5185.79 | 8 | 8 |
|
| 138 |
Motif group HL_45785.1
Basepair signature:
|
0.00 | -5258.98 | 9 | 8 |
|
| 139 |
Motif group HL_05304.3
Basepair signature:
|
0.00 | -5341.32 | 10 | 10 |
|
| 140 |
Motif group HL_85434.1
Basepair signature:
|
0.00 | -5353.99 | 8 | 7 |
|
| 141 |
Motif group HL_50779.4
Basepair signature:
|
0.00 | -5360.04 | 8 | 7 |
|
| 142 |
Motif group HL_15118.1
Basepair signature:
|
0.00 | -5365.89 | 9 | 9 |
|
| 143 |
Motif group HL_23115.1
Basepair signature:
|
0.00 | -5419.93 | 8 | 8 |
tRNA D-loop |
| 144 |
Motif group HL_81312.1
Basepair signature:
|
0.00 | -5424.63 | 10 | 9 |
|
| 145 |
Motif group HL_68257.1
Basepair signature:
|
0.00 | -5432.10 | 8 | 8 |
|
| 146 |
Motif group HL_94376.1
Basepair signature:
|
0.00 | -5439.75 | 9 | 8 |
Pseudoknot geometry |
| 147 |
Motif group HL_19210.3
Basepair signature:
|
0.00 | -5444.39 | 8 | 7 |
|
| 148 |
Motif group HL_99769.3
Basepair signature:
|
0.00 | -5469.61 | 8 | 8 |
|
| 149 |
Motif group HL_70751.1
Basepair signature:
|
0.00 | -5580.74 | 8 | 8 |
|
| 150 |
Motif group HL_55305.1
Basepair signature:
|
0.00 | -5605.01 | 9 | 9 |
|
| 151 |
Motif group HL_87463.1
Basepair signature:
|
0.00 | -5614.89 | 8 | 7 |
|
| 152 |
Motif group HL_11542.1
Basepair signature:
|
0.00 | -5655.52 | 10 | 10 |
|
| 153 |
Motif group HL_91503.7
Basepair signature:
|
0.00 | -5669.24 | 8 | 8 |
|
| 154 |
Motif group HL_80411.1
Basepair signature:
|
0.00 | -5693.83 | 8 | 8 |
tRNA D-loop |
| 155 |
Motif group HL_57863.1
Basepair signature:
|
0.00 | -5694.55 | 7 | 6 |
G-quadruplex fragment |
| 156 |
Motif group HL_88558.1
Basepair signature:
|
0.00 | -5705.35 | 9 | 9 |
|
| 157 |
Motif group HL_04642.1
Basepair signature:
|
0.00 | -5716.73 | 7 | 7 |
tRNA D-loop |
| 158 |
Motif group HL_80599.2
Basepair signature:
|
0.00 | -5736.84 | 6 | 6 |
|
| 159 |
Motif group HL_01255.1
Basepair signature:
|
0.00 | -5742.82 | 9 | 9 |
|
| 160 |
Motif group HL_36684.4
Basepair signature:
|
0.00 | -5748.03 | 8 | 8 |
|
| 161 |
Motif group HL_29762.1
Basepair signature:
|
0.00 | -5776.35 | 8 | 8 |
|
| 162 |
Motif group HL_78284.1
Basepair signature:
|
0.00 | -5779.66 | 9 | 9 |
|
| 163 |
Motif group HL_50418.1
Basepair signature:
|
0.00 | -5866.04 | 8 | 8 |
|
| 164 |
Motif group HL_08510.1
Basepair signature:
|
0.00 | -5901.92 | 7 | 6 |
|
| 165 |
Motif group HL_58224.1
Basepair signature:
|
0.00 | -5930.35 | 7 | 7 |
|
| 166 |
Motif group HL_93383.1
Basepair signature:
|
0.00 | -5939.50 | 6 | 6 |
|
| 167 |
Motif group HL_68572.1
Basepair signature:
|
0.00 | -5983.94 | 11 | 11 |
|
| 168 |
Motif group HL_16398.2
Basepair signature:
|
0.00 | -6013.09 | 11 | 10 |
|
| 169 |
Motif group HL_23010.1
Basepair signature:
|
0.00 | -6014.08 | 8 | 8 |
|
| 170 |
Motif group HL_98252.1
Basepair signature:
|
0.00 | -6014.48 | 9 | 8 |
|
| 171 |
Motif group HL_29129.3
Basepair signature:
|
0.00 | -6040.04 | 8 | 7 |
|
| 172 |
Motif group HL_93135.1
Basepair signature:
|
0.00 | -6051.84 | 8 | 8 |
Pseudoknot |
| 173 |
Motif group HL_32735.2
Basepair signature:
|
0.00 | -6088.68 | 6 | 6 |
|
| 174 |
Motif group HL_74292.1
Basepair signature:
|
0.00 | -6108.22 | 7 | 7 |
|
| 175 |
Motif group HL_38649.1
Basepair signature:
|
0.00 | -6113.58 | 9 | 9 |
|
| 176 |
Motif group HL_97733.1
Basepair signature:
|
0.00 | -6117.18 | 8 | 7 |
|
| 177 |
Motif group HL_47732.1
Basepair signature:
|
0.00 | -6176.22 | 10 | 9 |
|
| 178 |
Motif group HL_04641.1
Basepair signature:
|
0.00 | -6189.85 | 7 | 7 |
|
| 179 |
Motif group HL_66853.7
Basepair signature:
|
0.00 | -6261.20 | 6 | 6 |
|
| 180 |
Motif group HL_55436.1
Basepair signature:
|
0.00 | -6330.05 | 7 | 7 |
|
| 181 |
Motif group HL_64292.1
Basepair signature:
|
0.00 | -6331.91 | 13 | 13 |
|
| 182 |
Motif group HL_59330.1
Basepair signature:
|
0.00 | -6342.00 | 6 | 5 |
|
| 183 |
Motif group HL_29958.1
Basepair signature:
|
0.00 | -6485.84 | 11 | 10 |
|
| 184 |
Motif group HL_69139.1
Basepair signature:
|
0.00 | -6596.47 | 8 | 7 |
|
| 185 |
Motif group HL_45175.1
Basepair signature:
|
0.00 | -6682.36 | 6 | 6 |
tRNA D-loop |
| 186 |
Motif group HL_73255.1
Basepair signature:
|
0.00 | -6719.71 | 7 | 7 |
|
| 187 |
Motif group HL_35677.3
Basepair signature:
|
0.00 | -6778.67 | 7 | 6 |
|
| 188 |
Motif group HL_99867.1
Basepair signature:
|
0.00 | -6794.04 | 7 | 7 |
|
| 189 |
Motif group HL_18565.1
Basepair signature:
|
0.00 | -6813.13 | 6 | 6 |
|
| 190 |
Motif group HL_38046.1
Basepair signature:
|
0.00 | -6819.74 | 7 | 6 |
|
| 191 |
Motif group HL_85367.2
Basepair signature:
|
0.00 | -6904.22 | 6 | 5 |
|
| 192 |
Motif group HL_75293.5
Basepair signature:
|
0.00 | -6919.12 | 7 | 7 |
|
| 193 |
Motif group HL_53454.2
Basepair signature:
|
0.00 | -6919.43 | 7 | 7 |
|
| 194 |
Motif group HL_33983.1
Basepair signature:
|
0.00 | -6934.81 | 6 | 6 |
|
| 195 |
Motif group HL_83632.1
Basepair signature:
|
0.00 | -7142.72 | 6 | 6 |
tRNA anticodon loop |
| 196 |
Motif group HL_84299.4
Basepair signature:
|
0.00 | -7267.97 | 6 | 6 |
|
| 197 |
Motif group HL_25061.1
Basepair signature:
|
0.00 | -7347.49 | 7 | 6 |
|
| 198 |
Motif group HL_80008.1
Basepair signature:
|
0.00 | -7391.03 | 6 | 6 |
|
| 199 |
Motif group HL_20781.1
Basepair signature:
|
0.00 | -7406.53 | 8 | 8 |
|
| 200 |
Motif group HL_72628.1
Basepair signature:
|
0.00 | -7430.63 | 6 | 6 |
|
| 201 |
Motif group HL_06059.6
Basepair signature:
|
0.00 | -7717.84 | 6 | 6 |
tRNA anticodon loop |
| 202 |
Motif group HL_80241.1
Basepair signature:
|
0.00 | -7734.95 | 6 | 6 |
|
| 203 |
Motif group HL_38808.1
Basepair signature:
|
0.00 | -7776.02 | 6 | 6 |
|
| 204 |
Motif group HL_64690.6
Basepair signature:
|
0.00 | -7821.23 | 6 | 6 |
|
| 205 |
Motif group HL_99748.1
Basepair signature:
|
0.00 | -7880.76 | 5 | 5 |
Other HL |
| 206 |
Motif group HL_42998.2
Basepair signature:
|
0.00 | -7974.46 | 6 | 5 |
|
| 207 |
Motif group HL_27670.2
Basepair signature:
|
0.00 | -8019.54 | 5 | 5 |
T-loop with unstacked turn |
| 208 |
Motif group HL_85993.1
Basepair signature:
|
0.00 | -8105.04 | 6 | 5 |
|
| 209 |
Motif group HL_51447.1
Basepair signature:
|
0.00 | -8116.46 | 5 | 4 |
|
| 210 |
Motif group HL_89893.1
Basepair signature:
|
0.00 | -8124.00 | 5 | 4 |
|
| 211 |
Motif group HL_47854.1
Basepair signature:
|
0.00 | -8298.96 | 6 | 5 |
|
| 212 |
Motif group HL_02817.2
Basepair signature:
|
0.00 | -8533.56 | 6 | 5 |
|
| 213 |
Motif group HL_21372.1
Basepair signature:
|
0.00 | -8625.57 | 6 | 6 |
|
| 214 |
Motif group HL_58539.1
Basepair signature:
|
0.00 | -8625.65 | 13 | 13 |
|
| 215 |
Motif group HL_12870.1
Basepair signature:
|
0.00 | -8648.56 | 10 | 10 |
|
| 216 |
Motif group HL_22622.1
Basepair signature:
|
0.00 | -8709.53 | 6 | 5 |
|
| 217 |
Motif group HL_97983.1
Basepair signature:
|
0.00 | -8713.81 | 7 | 6 |
|
| 218 |
Motif group HL_99040.1
Basepair signature:
|
0.00 | -8792.94 | 4 | 3 |
|
| 219 |
Motif group HL_50537.6
Basepair signature:
|
0.00 | -8861.53 | 5 | 5 |
tRNA anticodon loop with synthetase |
| 220 |
Motif group HL_00914.1
Basepair signature:
|
0.00 | -8951.24 | 6 | 5 |
|
| 221 |
Motif group HL_10453.3
Basepair signature:
|
0.00 | -9051.48 | 5 | 4 |
tRNA anticodon loop |
| 222 |
Motif group HL_77082.1
Basepair signature:
|
0.00 | -9302.53 | 5 | 5 |
Pseudoknot geometry |
| 223 |
Motif group HL_37344.1
Basepair signature:
|
0.00 | -9535.01 | 5 | 4 |
|
| 224 |
Motif group HL_81538.2
Basepair signature:
|
0.00 | -9566.67 | 5 | 5 |
GNRA with tandem sheared |
| 225 |
Motif group HL_67667.2
Basepair signature:
|
0.00 | -9593.07 | 5 | 4 |
|
| 226 |
Motif group HL_07951.3
Basepair signature:
|
0.00 | -9999.00 | 6 | 6 |
tRNA D-loop |
| 227 |
Motif group HL_09260.2
Basepair signature:
|
0.00 | -9999.00 | 8 | 8 |
tRNA D-loop |
| 228 |
Motif group HL_15574.1
Basepair signature:
|
0.00 | -9999.00 | 6 | 5 |
|
| 229 |
Motif group HL_20535.2
Basepair signature:
|
0.00 | -9999.00 | 6 | 5 |
|
| 230 |
Motif group HL_22135.1
Basepair signature:
|
0.00 | -9999.00 | 4 | 3 |
|
| 231 |
Motif group HL_28791.1
Basepair signature:
|
0.00 | -9999.00 | 4 | 3 |
|
| 232 |
Motif group HL_30068.2
Basepair signature:
|
0.00 | -9999.00 | 4 | 4 |
|
| 233 |
Motif group HL_30680.3
Basepair signature:
|
0.00 | -9999.00 | 4 | 4 |
Pseudoknot geometry |
| 234 |
Motif group HL_31585.4
Basepair signature:
|
0.00 | -9999.00 | 4 | 4 |
Purine riboswitch |
| 235 |
Motif group HL_38168.1
Basepair signature:
|
0.00 | -9999.00 | 3 | 3 |
|
| 236 |
Motif group HL_39243.1
Basepair signature:
|
0.00 | -9999.00 | 6 | 4 |
|
| 237 |
Motif group HL_47787.2
Basepair signature:
|
0.00 | -9999.00 | 4 | 3 |
|
| 238 |
Motif group HL_52953.3
Basepair signature:
|
0.00 | -9999.00 | 3 | 3 |
|
| 239 |
Motif group HL_55195.3
Basepair signature:
|
0.00 | -9999.00 | 3 | 2 |
|
| 240 |
Motif group HL_56676.1
Basepair signature:
|
0.00 | -9999.00 | 3 | 3 |
|
| 241 |
Motif group HL_59735.5
Basepair signature:
|
0.00 | -9999.00 | 4 | 4 |
|
| 242 |
Motif group HL_59843.1
Basepair signature:
|
0.00 | -9999.00 | 4 | 3 |
|
| 243 |
Motif group HL_60914.1
Basepair signature:
|
0.00 | -9999.00 | 3 | 2 |
|
| 244 |
Motif group HL_65794.5
Basepair signature:
|
0.00 | -9999.00 | 3 | 3 |
Pseudoknot geometry |
| 245 |
Motif group HL_69752.2
Basepair signature:
|
0.00 | -9999.00 | 3 | 2 |
|
| 246 |
Motif group HL_75660.5
Basepair signature:
|
0.00 | -9999.00 | 2 | 2 |
|
| 247 |
Motif group HL_77600.2
Basepair signature:
|
0.00 | -9999.00 | 6 | 6 |
|
| 248 |
Motif group HL_78197.1
Basepair signature:
|
0.00 | -9999.00 | 6 | 5 |
|
| 249 |
Motif group HL_81100.2
Basepair signature:
|
0.00 | -9999.00 | 4 | 3 |
|
| 250 |
Motif group HL_93324.4
Basepair signature:
|
0.00 | -9999.00 | 5 | 5 |
Pseudoknot geometry |
| 251 |
Motif group HL_93535.1
Basepair signature:
|
0.00 | -9999.00 | 3 | 3 |
|
| 252 |
Motif group HL_94980.1
Basepair signature:
|
0.00 | -9999.00 | 3 | 2 |
|
| 253 |
Motif group HL_97917.2
Basepair signature:
|
0.00 | -9999.00 | 5 | 4 |
|