JAR3D
Query RF03087-CCF-3.98 completed
Run on Motif Atlas Version
using the Rfam secondary structure. Run with the CaCoFold secondary structure.
Rfam family RF03087 maps to these 30 chains: 9ISV|1|A, 9J3R|1|A, 9J3R|1|B, 9J3R|1|C, 9J3R|1|D, 9J3T|1|A, 9J3T|1|B, 9J3T|1|C, 9J3T|1|D, 9J3T|1|E, 9J3T|1|F, 9J3T|1|G, 9J3T|1|H, 9MM6|1|A, 9MM6|1|E, 9MM6|1|I, 9MM6|1|M, 9MM6|1|Q, 9MM6|1|U, 9MM6|1|Y, 9MM6|1|c, 9MME|1|U, 9MME|1|Y, 9MME|1|c, 9MME|1|g, 9MME|1|k, 9MME|1|o, 9MME|1|s, 9MME|1|w, 9MMG|1|c See more about them at RNA 3D Hub by filtering on the chain or the Rfam family.
Loop 34 Hairpin loop
Column numbers: 782-799 - View nucleotides in PDB file(s)
Scored sequences and counts
----GAAA---------- 132
A---GAAA---------U 28
----GGGA---------- 16
CU--GAAU--------AA 11
----GCAA---------- 9
----GUAA---------- 9
G---GAAA---------C 8
G---GAAA---------U 6
----GACA---------- 6
UA--GAAA--------UG 4
C---GUAA---------G 4
C---GAUCAAAA-----G 3
A---GUAA---------U 3
G---GUGA---------C 3
----GUAAU--------- 3
----UAAA---------- 3
CA--GAAA--------UA 2
A---GAAA---------C 2
A---GUGA---------U 2
G---GUAA---------C 2
U---GAAA---------A 2
----GAGA---------- 2
----GUGA---------- 2
----GUUU---------- 2
AAUCAGCAGUUAA-GGUU 1
----GAAUUGAAAA---- 1
CU--GAAUA-------AG 1
----GAAUAAAA------ 1
UA--GAAA--------UA 1
A---UAAAA--------U 1
CU--AUCA---------G 1
GC--GAAA---------G 1
U---UAAAA--------G 1
----CUAAA--------G 1
A---GACA---------U 1
A---GGGA---------U 1
C---GAAA---------G 1
C---GCAA---------G 1
G---GACA---------C 1
G---GUGA---------U 1
G---UAAA---------A 1
U---GAAA---------G 1
U---GAAA---------U 1
----AGGAA--------- 1
----ACAA---------- 1
----GAUA---------- 1
----GGAA---------- 1
Omitted sequenced and counts
------------------ 3
Click on headings to reorder table
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group HL_37824.7
Basepair signature:
|
85.71 | -8.03 | 2 | 0 |
GNRA |
| 2 |
Motif group HL_56334.1
Basepair signature:
|
83.28 | -50.68 | 2 | 1 |
Mini UNCG |
| 3 |
Motif group HL_53890.2
Basepair signature:
|
78.05 | -58.72 | 2 | 0 |
|
| 4 |
Motif group HL_04783.2
Basepair signature:
|
75.26 | 4.93 | 2 | 0 |
|
| 5 |
Motif group HL_75660.5
Basepair signature:
|
72.47 | -36.06 | 2 | 0 |
|
| 6 |
Motif group HL_50006.2
Basepair signature:
|
71.08 | -65.84 | 2 | 0 |
|
| 7 |
Motif group HL_52953.3
Basepair signature:
|
71.08 | -187.24 | 2 | 0 |
|
| 8 |
Motif group HL_65794.5
Basepair signature:
|
70.38 | -208.02 | 2 | 0 |
Pseudoknot geometry |
| 9 |
Motif group HL_38901.2
Basepair signature:
|
70.03 | -61.13 | 2 | 0 |
tRNA D-loop |
| 10 |
Motif group HL_82710.2
Basepair signature:
|
68.99 | -45.08 | 2 | 0 |
|
| 11 |
Motif group HL_13189.1
Basepair signature:
|
67.94 | -48.45 | 2 | 2 |
|
| 12 |
Motif group HL_80709.3
Basepair signature:
|
67.60 | -6748.57 | 2 | 0 |
|
| 13 |
Motif group HL_47787.2
Basepair signature:
|
66.90 | -106.75 | 2 | 0 |
|
| 14 |
Motif group HL_38168.1
Basepair signature:
|
60.63 | -56.37 | 2 | 1 |
|
| 15 |
Motif group HL_93535.1
Basepair signature:
|
27.18 | -45.22 | 3 | 1 |
|
| 16 |
Motif group HL_56676.1
Basepair signature:
|
26.48 | -81.81 | 3 | 1 |
|
| 17 |
Motif group HL_59843.1
Basepair signature:
|
25.09 | -60.96 | 3 | 1 |
|
| 18 |
Motif group HL_13963.3
Basepair signature:
|
23.34 | -92.77 | 4 | 2 |
|
| 19 |
Motif group HL_57875.1
Basepair signature:
|
21.60 | -95.26 | 4 | 2 |
|
| 20 |
Motif group HL_80922.2
Basepair signature:
|
20.91 | -51.55 | 3 | 1 |
|
| 21 |
Motif group HL_62934.1
Basepair signature:
|
20.21 | -96.15 | 4 | 2 |
|
| 22 |
Motif group HL_87954.2
Basepair signature:
|
16.72 | -104.64 | 3 | 1 |
|
| 23 |
Motif group HL_97917.2
Basepair signature:
|
14.98 | -100.67 | 4 | 2 |
|
| 24 |
Motif group HL_22584.6
Basepair signature:
|
14.29 | -111.56 | 3 | 1 |
Fab BL3-6 binding hairpin with tSW |
| 25 |
Motif group HL_49922.4
Basepair signature:
|
13.94 | -112.92 | 3 | 2 |
|
| 26 |
Motif group HL_07886.3
Basepair signature:
|
13.59 | -87.29 | 3 | 2 |
|
| 27 |
Motif group HL_70782.2
Basepair signature:
|
11.15 | -70.30 | 3 | 3 |
|
| 28 |
Motif group HL_56131.2
Basepair signature:
|
9.41 | -73.81 | 3 | 3 |
|
| 29 |
Motif group HL_71391.1
Basepair signature:
|
8.36 | -118.44 | 3 | 1 |
|
| 30 |
Motif group HL_78677.1
Basepair signature:
|
8.01 | -214.95 | 3 | 2 |
|
| 31 |
Motif group HL_48417.5
Basepair signature:
|
7.32 | -55.40 | 3 | 2 |
|
| 32 |
Motif group HL_04259.3
Basepair signature:
|
6.97 | -126.11 | 4 | 2 |
GNRA with extra cWW |
| 33 |
Motif group HL_34617.5
Basepair signature:
|
6.62 | -144.37 | 4 | 2 |
UNCG |
| 34 |
Motif group HL_01609.3
Basepair signature:
|
6.27 | -136.57 | 4 | 2 |
T-loop with 2 bulged bases not stacked |
| 35 |
Motif group HL_50318.1
Basepair signature:
|
5.57 | -124.88 | 5 | 3 |
|
| 36 |
Motif group HL_69752.2
Basepair signature:
|
5.23 | -117.61 | 4 | 3 |
|
| 37 |
Motif group HL_48778.2
Basepair signature:
|
4.88 | -82.56 | 2 | 2 |
Mini UNCG |
| 38 |
Motif group HL_55195.3
Basepair signature:
|
4.88 | -113.60 | 3 | 2 |
|
| 39 |
Motif group HL_41464.2
Basepair signature:
|
4.53 | -118.90 | 5 | 3 |
|
| 40 |
Motif group HL_20535.2
Basepair signature:
|
4.53 | -129.21 | 4 | 3 |
|
| 41 |
Motif group HL_26934.1
Basepair signature:
|
4.18 | -111.61 | 6 | 4 |
|
| 42 |
Motif group HL_28075.1
Basepair signature:
|
4.18 | -168.73 | 4 | 2 |
|
| 43 |
Motif group HL_77436.5
Basepair signature:
|
4.18 | -181.55 | 4 | 2 |
T-loop related |
| 44 |
Motif group HL_57176.2
Basepair signature:
|
3.48 | -6786.90 | 3 | 2 |
Pseudoknot geometry with 3' bulge |
| 45 |
Motif group HL_59735.5
Basepair signature:
|
3.14 | -9299.23 | 3 | 1 |
|
| 46 |
Motif group HL_39243.1
Basepair signature:
|
2.79 | -307.97 | 3 | 2 |
|
| 47 |
Motif group HL_20167.2
Basepair signature:
|
2.44 | -104.83 | 5 | 3 |
|
| 48 |
Motif group HL_78347.4
Basepair signature:
|
2.44 | -108.95 | 5 | 3 |
|
| 49 |
Motif group HL_28791.1
Basepair signature:
|
2.44 | -291.94 | 5 | 3 |
|
| 50 |
Motif group HL_85993.1
Basepair signature:
|
2.44 | -7159.98 | 5 | 3 |
|
| 51 |
Motif group HL_32346.4
Basepair signature:
|
2.09 | -79.11 | 3 | 2 |
|
| 52 |
Motif group HL_81100.2
Basepair signature:
|
2.09 | -6956.74 | 5 | 3 |
|
| 53 |
Motif group HL_46501.1
Basepair signature:
|
1.74 | -92.48 | 3 | 2 |
|
| 54 |
Motif group HL_27483.1
Basepair signature:
|
1.74 | -107.87 | 4 | 3 |
|
| 55 |
Motif group HL_87553.1
Basepair signature:
|
1.39 | -168.29 | 5 | 3 |
|
| 56 |
Motif group HL_72628.1
Basepair signature:
|
1.39 | -233.70 | 5 | 3 |
|
| 57 |
Motif group HL_13529.1
Basepair signature:
|
1.05 | -113.52 | 5 | 3 |
|
| 58 |
Motif group HL_75293.5
Basepair signature:
|
1.05 | -175.22 | 6 | 4 |
|
| 59 |
Motif group HL_18423.1
Basepair signature:
|
1.05 | -198.78 | 7 | 5 |
|
| 60 |
Motif group HL_60266.1
Basepair signature:
|
1.05 | -198.95 | 7 | 5 |
|
| 61 |
Motif group HL_88205.2
Basepair signature:
|
1.05 | -314.32 | 6 | 4 |
|
| 62 |
Motif group HL_50779.4
Basepair signature:
|
1.05 | -5146.68 | 6 | 5 |
|
| 63 |
Motif group HL_31585.4
Basepair signature:
|
1.05 | -6808.19 | 4 | 2 |
Purine riboswitch |
| 64 |
Motif group HL_37344.1
Basepair signature:
|
0.70 | -167.34 | 6 | 4 |
|
| 65 |
Motif group HL_94980.1
Basepair signature:
|
0.70 | -340.92 | 4 | 4 |
|
| 66 |
Motif group HL_15574.1
Basepair signature:
|
0.70 | -6812.17 | 3 | 2 |
|
| 67 |
Motif group HL_20811.4
Basepair signature:
|
0.35 | -84.84 | 3 | 2 |
tRNA D-loop |
| 68 |
Motif group HL_57863.1
Basepair signature:
|
0.35 | -115.62 | 6 | 5 |
G-quadruplex fragment |
| 69 |
Motif group HL_77082.1
Basepair signature:
|
0.35 | -121.73 | 4 | 2 |
Pseudoknot geometry |
| 70 |
Motif group HL_66103.1
Basepair signature:
|
0.35 | -131.74 | 4 | 2 |
|
| 71 |
Motif group HL_10540.1
Basepair signature:
|
0.35 | -133.49 | 4 | 2 |
|
| 72 |
Motif group HL_30068.2
Basepair signature:
|
0.35 | -134.96 | 3 | 1 |
|
| 73 |
Motif group HL_80008.1
Basepair signature:
|
0.35 | -228.59 | 5 | 3 |
|
| 74 |
Motif group HL_33983.1
Basepair signature:
|
0.35 | -4458.62 | 5 | 3 |
|
| 75 |
Motif group HL_29762.1
Basepair signature:
|
0.35 | -5150.16 | 7 | 5 |
|
| 76 |
Motif group HL_27670.2
Basepair signature:
|
0.35 | -5178.33 | 5 | 3 |
T-loop with unstacked turn |
| 77 |
Motif group HL_10453.3
Basepair signature:
|
0.35 | -5828.95 | 4 | 3 |
tRNA anticodon loop |
| 78 |
Motif group HL_89567.2
Basepair signature:
|
0.00 | -86.51 | 4 | 2 |
|
| 79 |
Motif group HL_50860.2
Basepair signature:
|
0.00 | -92.83 | 5 | 3 |
|
| 80 |
Motif group HL_86870.2
Basepair signature:
|
0.00 | -101.12 | 3 | 2 |
|
| 81 |
Motif group HL_20743.5
Basepair signature:
|
0.00 | -109.95 | 5 | 3 |
|
| 82 |
Motif group HL_86769.4
Basepair signature:
|
0.00 | -113.78 | 4 | 3 |
|
| 83 |
Motif group HL_73266.9
Basepair signature:
|
0.00 | -114.87 | 5 | 3 |
|
| 84 |
Motif group HL_18565.1
Basepair signature:
|
0.00 | -114.98 | 5 | 3 |
|
| 85 |
Motif group HL_89893.1
Basepair signature:
|
0.00 | -122.91 | 5 | 3 |
|
| 86 |
Motif group HL_02887.3
Basepair signature:
|
0.00 | -124.07 | 7 | 5 |
T-loop with 3 stacked bulged bases |
| 87 |
Motif group HL_93438.2
Basepair signature:
|
0.00 | -128.31 | 6 | 4 |
|
| 88 |
Motif group HL_50537.6
Basepair signature:
|
0.00 | -128.39 | 6 | 4 |
tRNA anticodon loop with synthetase |
| 89 |
Motif group HL_66853.7
Basepair signature:
|
0.00 | -132.78 | 6 | 5 |
|
| 90 |
Motif group HL_86012.1
Basepair signature:
|
0.00 | -132.93 | 7 | 5 |
T-loop with unstacked turn |
| 91 |
Motif group HL_68257.1
Basepair signature:
|
0.00 | -134.49 | 7 | 5 |
|
| 92 |
Motif group HL_99748.1
Basepair signature:
|
0.00 | -135.59 | 6 | 4 |
Other HL |
| 93 |
Motif group HL_81538.2
Basepair signature:
|
0.00 | -136.07 | 4 | 2 |
GNRA with tandem sheared |
| 94 |
Motif group HL_98864.1
Basepair signature:
|
0.00 | -143.97 | 7 | 6 |
T-loop with unstacked turn |
| 95 |
Motif group HL_47854.1
Basepair signature:
|
0.00 | -145.48 | 4 | 3 |
|
| 96 |
Motif group HL_61996.2
Basepair signature:
|
0.00 | -146.75 | 6 | 4 |
|
| 97 |
Motif group HL_28252.8
Basepair signature:
|
0.00 | -148.02 | 5 | 3 |
T-loop with 2 stacked bulged bases |
| 98 |
Motif group HL_36335.1
Basepair signature:
|
0.00 | -149.45 | 6 | 4 |
|
| 99 |
Motif group HL_04642.1
Basepair signature:
|
0.00 | -150.10 | 7 | 6 |
tRNA D-loop |
| 100 |
Motif group HL_64690.6
Basepair signature:
|
0.00 | -153.02 | 5 | 4 |
|
| 101 |
Motif group HL_84299.4
Basepair signature:
|
0.00 | -154.93 | 5 | 4 |
|
| 102 |
Motif group HL_81545.2
Basepair signature:
|
0.00 | -158.17 | 6 | 5 |
|
| 103 |
Motif group HL_32392.1
Basepair signature:
|
0.00 | -158.25 | 4 | 4 |
|
| 104 |
Motif group HL_90620.1
Basepair signature:
|
0.00 | -166.91 | 7 | 5 |
|
| 105 |
Motif group HL_45175.1
Basepair signature:
|
0.00 | -169.69 | 7 | 5 |
tRNA D-loop |
| 106 |
Motif group HL_41902.1
Basepair signature:
|
0.00 | -177.31 | 8 | 7 |
|
| 107 |
Motif group HL_83808.4
Basepair signature:
|
0.00 | -179.44 | 9 | 7 |
Pseudoknot |
| 108 |
Motif group HL_42046.2
Basepair signature:
|
0.00 | -179.56 | 5 | 3 |
|
| 109 |
Motif group HL_41543.1
Basepair signature:
|
0.00 | -186.67 | 9 | 7 |
|
| 110 |
Motif group HL_16991.1
Basepair signature:
|
0.00 | -186.72 | 8 | 7 |
G-quadruplex fragment |
| 111 |
Motif group HL_01962.2
Basepair signature:
|
0.00 | -188.73 | 7 | 5 |
|
| 112 |
Motif group HL_98252.1
Basepair signature:
|
0.00 | -191.91 | 9 | 7 |
|
| 113 |
Motif group HL_25847.2
Basepair signature:
|
0.00 | -192.85 | 7 | 6 |
|
| 114 |
Motif group HL_43517.1
Basepair signature:
|
0.00 | -192.95 | 5 | 4 |
|
| 115 |
Motif group HL_08100.1
Basepair signature:
|
0.00 | -193.04 | 5 | 3 |
|
| 116 |
Motif group HL_67079.1
Basepair signature:
|
0.00 | -193.58 | 8 | 6 |
|
| 117 |
Motif group HL_53504.3
Basepair signature:
|
0.00 | -195.83 | 6 | 4 |
|
| 118 |
Motif group HL_74379.3
Basepair signature:
|
0.00 | -198.59 | 8 | 7 |
|
| 119 |
Motif group HL_04171.7
Basepair signature:
|
0.00 | -199.83 | 8 | 6 |
|
| 120 |
Motif group HL_23509.1
Basepair signature:
|
0.00 | -206.44 | 8 | 8 |
|
| 121 |
Motif group HL_73255.1
Basepair signature:
|
0.00 | -207.51 | 8 | 6 |
|
| 122 |
Motif group HL_70658.1
Basepair signature:
|
0.00 | -213.83 | 9 | 7 |
|
| 123 |
Motif group HL_86109.1
Basepair signature:
|
0.00 | -214.80 | 9 | 7 |
|
| 124 |
Motif group HL_49941.1
Basepair signature:
|
0.00 | -219.75 | 8 | 7 |
tRNA D-loop |
| 125 |
Motif group HL_85434.1
Basepair signature:
|
0.00 | -219.77 | 7 | 5 |
|
| 126 |
Motif group HL_68767.1
Basepair signature:
|
0.00 | -220.28 | 9 | 7 |
tRNA D-loop |
| 127 |
Motif group HL_21372.1
Basepair signature:
|
0.00 | -228.30 | 6 | 4 |
|
| 128 |
Motif group HL_81205.3
Basepair signature:
|
0.00 | -238.48 | 10 | 8 |
|
| 129 |
Motif group HL_84847.1
Basepair signature:
|
0.00 | -240.02 | 10 | 8 |
|
| 130 |
Motif group HL_08602.1
Basepair signature:
|
0.00 | -244.66 | 10 | 9 |
|
| 131 |
Motif group HL_29129.3
Basepair signature:
|
0.00 | -246.37 | 7 | 5 |
|
| 132 |
Motif group HL_74055.2
Basepair signature:
|
0.00 | -248.21 | 11 | 9 |
|
| 133 |
Motif group HL_07583.1
Basepair signature:
|
0.00 | -248.69 | 10 | 8 |
|
| 134 |
Motif group HL_93616.2
Basepair signature:
|
0.00 | -249.57 | 8 | 6 |
tRNA D-loop |
| 135 |
Motif group HL_40252.4
Basepair signature:
|
0.00 | -257.01 | 8 | 6 |
|
| 136 |
Motif group HL_22135.1
Basepair signature:
|
0.00 | -267.03 | 3 | 3 |
|
| 137 |
Motif group HL_99040.1
Basepair signature:
|
0.00 | -271.62 | 5 | 4 |
|
| 138 |
Motif group HL_73247.1
Basepair signature:
|
0.00 | -289.83 | 11 | 9 |
Pseudoknot geometry |
| 139 |
Motif group HL_35941.1
Basepair signature:
|
0.00 | -293.74 | 5 | 4 |
|
| 140 |
Motif group HL_60914.1
Basepair signature:
|
0.00 | -302.99 | 5 | 4 |
|
| 141 |
Motif group HL_98870.1
Basepair signature:
|
0.00 | -305.63 | 11 | 9 |
|
| 142 |
Motif group HL_13971.1
Basepair signature:
|
0.00 | -311.51 | 11 | 10 |
|
| 143 |
Motif group HL_14757.1
Basepair signature:
|
0.00 | -312.22 | 14 | 12 |
|
| 144 |
Motif group HL_91641.1
Basepair signature:
|
0.00 | -318.76 | 13 | 11 |
|
| 145 |
Motif group HL_51921.1
Basepair signature:
|
0.00 | -399.46 | 17 | 15 |
|
| 146 |
Motif group HL_92488.1
Basepair signature:
|
0.00 | -499.96 | 12 | 11 |
|
| 147 |
Motif group HL_97756.2
Basepair signature:
|
0.00 | -503.24 | 11 | 10 |
|
| 148 |
Motif group HL_76094.1
Basepair signature:
|
0.00 | -1185.74 | 3 | 2 |
|
| 149 |
Motif group HL_24792.1
Basepair signature:
|
0.00 | -2225.20 | 8 | 6 |
|
| 150 |
Motif group HL_22622.1
Basepair signature:
|
0.00 | -2362.55 | 6 | 4 |
|
| 151 |
Motif group HL_89881.5
Basepair signature:
|
0.00 | -3302.20 | 8 | 6 |
|
| 152 |
Motif group HL_02581.1
Basepair signature:
|
0.00 | -3312.30 | 11 | 9 |
tRNA D-loop |
| 153 |
Motif group HL_02483.1
Basepair signature:
|
0.00 | -3327.61 | 8 | 6 |
|
| 154 |
Motif group HL_45785.1
Basepair signature:
|
0.00 | -3415.34 | 9 | 8 |
|
| 155 |
Motif group HL_05304.3
Basepair signature:
|
0.00 | -3442.34 | 9 | 7 |
|
| 156 |
Motif group HL_91939.2
Basepair signature:
|
0.00 | -3514.66 | 8 | 6 |
|
| 157 |
Motif group HL_18978.1
Basepair signature:
|
0.00 | -3551.20 | 8 | 6 |
|
| 158 |
Motif group HL_06226.4
Basepair signature:
|
0.00 | -3561.60 | 7 | 6 |
|
| 159 |
Motif group HL_87463.1
Basepair signature:
|
0.00 | -3622.64 | 7 | 5 |
|
| 160 |
Motif group HL_99769.3
Basepair signature:
|
0.00 | -3623.90 | 8 | 7 |
|
| 161 |
Motif group HL_07480.2
Basepair signature:
|
0.00 | -3640.44 | 8 | 7 |
|
| 162 |
Motif group HL_33074.4
Basepair signature:
|
0.00 | -3694.89 | 10 | 8 |
U1 small nuclear ribonucleoprotein A binding hairpin |
| 163 |
Motif group HL_11542.1
Basepair signature:
|
0.00 | -3739.67 | 9 | 7 |
|
| 164 |
Motif group HL_89346.1
Basepair signature:
|
0.00 | -3779.75 | 15 | 13 |
|
| 165 |
Motif group HL_10456.1
Basepair signature:
|
0.00 | -3785.49 | 14 | 12 |
|
| 166 |
Motif group HL_66482.1
Basepair signature:
|
0.00 | -3807.70 | 14 | 12 |
|
| 167 |
Motif group HL_58224.1
Basepair signature:
|
0.00 | -3826.70 | 7 | 6 |
|
| 168 |
Motif group HL_23010.1
Basepair signature:
|
0.00 | -3870.10 | 8 | 6 |
|
| 169 |
Motif group HL_04641.1
Basepair signature:
|
0.00 | -3986.35 | 7 | 5 |
|
| 170 |
Motif group HL_08510.1
Basepair signature:
|
0.00 | -3997.78 | 7 | 6 |
|
| 171 |
Motif group HL_85461.1
Basepair signature:
|
0.00 | -4012.86 | 16 | 14 |
|
| 172 |
Motif group HL_99324.1
Basepair signature:
|
0.00 | -4012.94 | 14 | 12 |
|
| 173 |
Motif group HL_60293.1
Basepair signature:
|
0.00 | -4043.68 | 18 | 16 |
G-quadruplex |
| 174 |
Motif group HL_21400.1
Basepair signature:
|
0.00 | -4045.33 | 19 | 17 |
G-quadruplex |
| 175 |
Motif group HL_97733.1
Basepair signature:
|
0.00 | -4052.38 | 8 | 6 |
|
| 176 |
Motif group HL_00317.1
Basepair signature:
|
0.00 | -4058.91 | 16 | 14 |
|
| 177 |
Motif group HL_35354.1
Basepair signature:
|
0.00 | -4070.20 | 20 | 18 |
|
| 178 |
Motif group HL_38649.1
Basepair signature:
|
0.00 | -4084.67 | 8 | 6 |
|
| 179 |
Motif group HL_12758.3
Basepair signature:
|
0.00 | -4084.95 | 21 | 19 |
G-quadruplex |
| 180 |
Motif group HL_59564.1
Basepair signature:
|
0.00 | -4098.06 | 16 | 14 |
|
| 181 |
Motif group HL_15802.1
Basepair signature:
|
0.00 | -4143.41 | 7 | 6 |
|
| 182 |
Motif group HL_55436.1
Basepair signature:
|
0.00 | -4241.32 | 6 | 5 |
|
| 183 |
Motif group HL_93383.1
Basepair signature:
|
0.00 | -4247.06 | 5 | 4 |
|
| 184 |
Motif group HL_50851.1
Basepair signature:
|
0.00 | -4364.08 | 10 | 9 |
G-quadruplex fragment |
| 185 |
Motif group HL_53454.2
Basepair signature:
|
0.00 | -4437.92 | 6 | 4 |
|
| 186 |
Motif group HL_34964.1
Basepair signature:
|
0.00 | -4471.21 | 8 | 6 |
|
| 187 |
Motif group HL_38046.1
Basepair signature:
|
0.00 | -4498.09 | 6 | 4 |
|
| 188 |
Motif group HL_85367.2
Basepair signature:
|
0.00 | -4558.01 | 5 | 3 |
|
| 189 |
Motif group HL_20751.2
Basepair signature:
|
0.00 | -4576.38 | 10 | 8 |
|
| 190 |
Motif group HL_73916.1
Basepair signature:
|
0.00 | -4670.94 | 36 | 34 |
|
| 191 |
Motif group HL_73183.1
Basepair signature:
|
0.00 | -4681.14 | 11 | 9 |
Pseudoknot geometry with G-bulge |
| 192 |
Motif group HL_04725.1
Basepair signature:
|
0.00 | -4683.29 | 9 | 8 |
|
| 193 |
Motif group HL_83632.1
Basepair signature:
|
0.00 | -4697.12 | 5 | 3 |
tRNA anticodon loop |
| 194 |
Motif group HL_25061.1
Basepair signature:
|
0.00 | -4711.25 | 6 | 4 |
|
| 195 |
Motif group HL_67407.5
Basepair signature:
|
0.00 | -4715.89 | 7 | 6 |
|
| 196 |
Motif group HL_23115.1
Basepair signature:
|
0.00 | -4854.72 | 8 | 7 |
tRNA D-loop |
| 197 |
Motif group HL_31581.6
Basepair signature:
|
0.00 | -4896.77 | 10 | 8 |
|
| 198 |
Motif group HL_07903.1
Basepair signature:
|
0.00 | -4898.63 | 11 | 10 |
|
| 199 |
Motif group HL_81312.1
Basepair signature:
|
0.00 | -4932.48 | 9 | 7 |
|
| 200 |
Motif group HL_63355.1
Basepair signature:
|
0.00 | -4944.85 | 10 | 8 |
|
| 201 |
Motif group HL_37369.2
Basepair signature:
|
0.00 | -4951.59 | 5 | 3 |
|
| 202 |
Motif group HL_19210.3
Basepair signature:
|
0.00 | -4954.87 | 7 | 5 |
|
| 203 |
Motif group HL_06059.6
Basepair signature:
|
0.00 | -4987.64 | 5 | 3 |
tRNA anticodon loop |
| 204 |
Motif group HL_88364.2
Basepair signature:
|
0.00 | -5051.02 | 13 | 12 |
|
| 205 |
Motif group HL_91503.7
Basepair signature:
|
0.00 | -5064.89 | 7 | 5 |
|
| 206 |
Motif group HL_80599.2
Basepair signature:
|
0.00 | -5067.76 | 7 | 5 |
|
| 207 |
Motif group HL_88558.1
Basepair signature:
|
0.00 | -5084.39 | 8 | 6 |
|
| 208 |
Motif group HL_55305.1
Basepair signature:
|
0.00 | -5091.56 | 8 | 7 |
|
| 209 |
Motif group HL_80411.1
Basepair signature:
|
0.00 | -5104.24 | 9 | 7 |
tRNA D-loop |
| 210 |
Motif group HL_38808.1
Basepair signature:
|
0.00 | -5129.99 | 6 | 4 |
|
| 211 |
Motif group HL_01255.1
Basepair signature:
|
0.00 | -5211.19 | 8 | 6 |
|
| 212 |
Motif group HL_15118.1
Basepair signature:
|
0.00 | -5239.31 | 10 | 8 |
|
| 213 |
Motif group HL_94376.1
Basepair signature:
|
0.00 | -5295.42 | 7 | 6 |
Pseudoknot geometry |
| 214 |
Motif group HL_25967.2
Basepair signature:
|
0.00 | -5317.44 | 5 | 4 |
|
| 215 |
Motif group HL_32735.2
Basepair signature:
|
0.00 | -5339.74 | 5 | 3 |
|
| 216 |
Motif group HL_42998.2
Basepair signature:
|
0.00 | -5357.41 | 4 | 2 |
|
| 217 |
Motif group HL_93135.1
Basepair signature:
|
0.00 | -5426.60 | 8 | 7 |
Pseudoknot |
| 218 |
Motif group HL_16398.2
Basepair signature:
|
0.00 | -5451.10 | 9 | 7 |
|
| 219 |
Motif group HL_02817.2
Basepair signature:
|
0.00 | -5504.14 | 4 | 3 |
|
| 220 |
Motif group HL_70751.1
Basepair signature:
|
0.00 | -5531.25 | 8 | 6 |
|
| 221 |
Motif group HL_74292.1
Basepair signature:
|
0.00 | -5589.45 | 6 | 5 |
|
| 222 |
Motif group HL_47732.1
Basepair signature:
|
0.00 | -5615.16 | 9 | 7 |
|
| 223 |
Motif group HL_78284.1
Basepair signature:
|
0.00 | -5632.54 | 8 | 6 |
|
| 224 |
Motif group HL_59330.1
Basepair signature:
|
0.00 | -5644.34 | 7 | 6 |
|
| 225 |
Motif group HL_36684.4
Basepair signature:
|
0.00 | -5680.52 | 7 | 5 |
|
| 226 |
Motif group HL_64292.1
Basepair signature:
|
0.00 | -5730.64 | 13 | 11 |
|
| 227 |
Motif group HL_00914.1
Basepair signature:
|
0.00 | -5755.96 | 4 | 2 |
|
| 228 |
Motif group HL_50418.1
Basepair signature:
|
0.00 | -5796.72 | 7 | 5 |
|
| 229 |
Motif group HL_29958.1
Basepair signature:
|
0.00 | -5836.97 | 11 | 9 |
|
| 230 |
Motif group HL_68572.1
Basepair signature:
|
0.00 | -5911.61 | 10 | 8 |
|
| 231 |
Motif group HL_69139.1
Basepair signature:
|
0.00 | -5932.72 | 9 | 7 |
|
| 232 |
Motif group HL_89199.2
Basepair signature:
|
0.00 | -6019.75 | 4 | 3 |
Mini UNCG |
| 233 |
Motif group HL_35677.3
Basepair signature:
|
0.00 | -6084.80 | 7 | 5 |
|
| 234 |
Motif group HL_99867.1
Basepair signature:
|
0.00 | -6217.42 | 6 | 5 |
|
| 235 |
Motif group HL_12870.1
Basepair signature:
|
0.00 | -6340.41 | 9 | 7 |
|
| 236 |
Motif group HL_67667.2
Basepair signature:
|
0.00 | -6348.80 | 6 | 4 |
|
| 237 |
Motif group HL_80362.1
Basepair signature:
|
0.00 | -6538.58 | 7 | 5 |
|
| 238 |
Motif group HL_78197.1
Basepair signature:
|
0.00 | -6601.79 | 5 | 3 |
|
| 239 |
Motif group HL_20781.1
Basepair signature:
|
0.00 | -6736.41 | 8 | 6 |
|
| 240 |
Motif group HL_29966.1
Basepair signature:
|
0.00 | -6829.23 | 4 | 3 |
|
| 241 |
Motif group HL_65313.1
Basepair signature:
|
0.00 | -6855.20 | 6 | 4 |
|
| 242 |
Motif group HL_86883.1
Basepair signature:
|
0.00 | -6859.65 | 4 | 3 |
|
| 243 |
Motif group HL_93324.4
Basepair signature:
|
0.00 | -6901.26 | 4 | 2 |
Pseudoknot geometry |
| 244 |
Motif group HL_26631.1
Basepair signature:
|
0.00 | -6996.98 | 4 | 3 |
|
| 245 |
Motif group HL_51447.1
Basepair signature:
|
0.00 | -7207.10 | 5 | 3 |
|
| 246 |
Motif group HL_80241.1
Basepair signature:
|
0.00 | -7436.37 | 5 | 3 |
|
| 247 |
Motif group HL_58539.1
Basepair signature:
|
0.00 | -7816.31 | 13 | 11 |
|
| 248 |
Motif group HL_09452.1
Basepair signature:
|
0.00 | -7850.28 | 6 | 5 |
|
| 249 |
Motif group HL_97983.1
Basepair signature:
|
0.00 | -7959.46 | 7 | 5 |
|
| 250 |
Motif group HL_77600.2
Basepair signature:
|
0.00 | -8929.88 | 5 | 3 |
|
| 251 |
Motif group HL_30680.3
Basepair signature:
|
0.00 | -9340.25 | 5 | 3 |
Pseudoknot geometry |
| 252 |
Motif group HL_07951.3
Basepair signature:
|
0.00 | -9999.00 | 6 | 4 |
tRNA D-loop |
| 253 |
Motif group HL_09260.2
Basepair signature:
|
0.00 | -9999.00 | 8 | 7 |
tRNA D-loop |