JAR3D
Query RF03087-CCF-3.98 completed
Run on Motif Atlas Version
using the Rfam secondary structure. Run with the CaCoFold secondary structure.
Rfam family RF03087 maps to these 30 chains: 9ISV|1|A, 9J3R|1|A, 9J3R|1|B, 9J3R|1|C, 9J3R|1|D, 9J3T|1|A, 9J3T|1|B, 9J3T|1|C, 9J3T|1|D, 9J3T|1|E, 9J3T|1|F, 9J3T|1|G, 9J3T|1|H, 9MM6|1|A, 9MM6|1|E, 9MM6|1|I, 9MM6|1|M, 9MM6|1|Q, 9MM6|1|U, 9MM6|1|Y, 9MM6|1|c, 9MME|1|U, 9MME|1|Y, 9MME|1|c, 9MME|1|g, 9MME|1|k, 9MME|1|o, 9MME|1|s, 9MME|1|w, 9MMG|1|c See more about them at RNA 3D Hub by filtering on the chain or the Rfam family.
Loop 38 Hairpin loop
Column numbers: 945-951 - View nucleotides in PDB file(s)
Scored sequences and counts
CUGAAUG 136
CUGAAAG 38
CUGAAGA 24
CUGAAUA 12
CUGAAG- 9
CUGAACG 7
CCGAAAG 6
CUCUUG- 5
CUGAAA- 5
AUGAAUU 4
CGGAAC- 4
CUGAAU- 4
CCGAAA- 3
ACA---- 3
CGCAUUG 2
CUGAAAA 2
GUGAAUG 2
GUGAAUU 2
UUGAAUG 2
UCUAUU- 2
ACAUG-- 2
GUG---- 2
ACACAUG 1
AUGAAAU 1
CCGGAAG 1
CCGUAAG 1
CUGAAUU 1
AAGUAA- 1
C-GAAUG 1
CUAAAG- 1
CUGACG- 1
CUGUAU- 1
UCUAUC- 1
UGGAAC- 1
UGUGGU- 1
CUAAC-- 1
Click on headings to reorder table
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group HL_57875.1
Basepair signature:
|
85.86 | 15.92 | 3 | 1 |
|
| 2 |
Motif group HL_53890.2
Basepair signature:
|
77.24 | 13.84 | 3 | 1 |
|
| 3 |
Motif group HL_50006.2
Basepair signature:
|
76.21 | 7.96 | 2 | 2 |
|
| 4 |
Motif group HL_75660.5
Basepair signature:
|
68.97 | -189.07 | 1 | 1 |
|
| 5 |
Motif group HL_28075.1
Basepair signature:
|
64.48 | -15.61 | 2 | 2 |
|
| 6 |
Motif group HL_01609.3
Basepair signature:
|
62.41 | -12.35 | 1 | 1 |
T-loop with 2 bulged bases not stacked |
| 7 |
Motif group HL_57176.2
Basepair signature:
|
60.00 | -3.40 | 2 | 1 |
Pseudoknot geometry with 3' bulge |
| 8 |
Motif group HL_69752.2
Basepair signature:
|
55.86 | -180.72 | 2 | 2 |
|
| 9 |
Motif group HL_77436.5
Basepair signature:
|
53.79 | -14.75 | 2 | 2 |
T-loop related |
| 10 |
Motif group HL_59735.5
Basepair signature:
|
53.10 | -1630.50 | 2 | 2 |
|
| 11 |
Motif group HL_39243.1
Basepair signature:
|
50.00 | -299.09 | 4 | 2 |
|
| 12 |
Motif group HL_50318.1
Basepair signature:
|
49.31 | -17.20 | 3 | 2 |
|
| 13 |
Motif group HL_25967.2
Basepair signature:
|
48.28 | -28.61 | 4 | 2 |
|
| 14 |
Motif group HL_04783.2
Basepair signature:
|
27.93 | -7.28 | 2 | 2 |
|
| 15 |
Motif group HL_10540.1
Basepair signature:
|
27.59 | -9.59 | 2 | 2 |
|
| 16 |
Motif group HL_82710.2
Basepair signature:
|
24.83 | -7.96 | 4 | 2 |
|
| 17 |
Motif group HL_87553.1
Basepair signature:
|
24.48 | -45.35 | 4 | 4 |
|
| 18 |
Motif group HL_18565.1
Basepair signature:
|
23.79 | -142.12 | 4 | 3 |
|
| 19 |
Motif group HL_46501.1
Basepair signature:
|
20.69 | -9.13 | 1 | 1 |
|
| 20 |
Motif group HL_30068.2
Basepair signature:
|
17.93 | -218.88 | 3 | 2 |
|
| 21 |
Motif group HL_80922.2
Basepair signature:
|
17.24 | -19.66 | 2 | 2 |
|
| 22 |
Motif group HL_65794.5
Basepair signature:
|
16.55 | -307.14 | 3 | 2 |
Pseudoknot geometry |
| 23 |
Motif group HL_04259.3
Basepair signature:
|
15.86 | -34.83 | 2 | 2 |
GNRA with extra cWW |
| 24 |
Motif group HL_33983.1
Basepair signature:
|
15.86 | -150.40 | 3 | 3 |
|
| 25 |
Motif group HL_41464.2
Basepair signature:
|
13.45 | -43.86 | 4 | 3 |
|
| 26 |
Motif group HL_87954.2
Basepair signature:
|
8.97 | -17.43 | 3 | 2 |
|
| 27 |
Motif group HL_38901.2
Basepair signature:
|
8.28 | -35.85 | 2 | 2 |
tRNA D-loop |
| 28 |
Motif group HL_25061.1
Basepair signature:
|
8.28 | -166.68 | 4 | 3 |
|
| 29 |
Motif group HL_56334.1
Basepair signature:
|
6.90 | -56.84 | 2 | 2 |
Mini UNCG |
| 30 |
Motif group HL_56131.2
Basepair signature:
|
6.55 | -47.21 | 4 | 3 |
|
| 31 |
Motif group HL_20811.4
Basepair signature:
|
6.55 | -47.23 | 1 | 1 |
tRNA D-loop |
| 32 |
Motif group HL_37824.7
Basepair signature:
|
6.21 | -42.27 | 1 | 1 |
GNRA |
| 33 |
Motif group HL_55195.3
Basepair signature:
|
6.21 | -245.21 | 3 | 2 |
|
| 34 |
Motif group HL_93535.1
Basepair signature:
|
5.86 | -231.42 | 3 | 3 |
|
| 35 |
Motif group HL_89199.2
Basepair signature:
|
5.52 | -34.75 | 1 | 1 |
Mini UNCG |
| 36 |
Motif group HL_13529.1
Basepair signature:
|
4.83 | -24.67 | 3 | 2 |
|
| 37 |
Motif group HL_71391.1
Basepair signature:
|
4.83 | -61.36 | 4 | 2 |
|
| 38 |
Motif group HL_48417.5
Basepair signature:
|
4.48 | -46.43 | 3 | 3 |
|
| 39 |
Motif group HL_07886.3
Basepair signature:
|
3.79 | -33.63 | 3 | 3 |
|
| 40 |
Motif group HL_70782.2
Basepair signature:
|
3.45 | -19.05 | 4 | 3 |
|
| 41 |
Motif group HL_99040.1
Basepair signature:
|
3.45 | -303.95 | 4 | 3 |
|
| 42 |
Motif group HL_86769.4
Basepair signature:
|
2.76 | -58.26 | 5 | 4 |
|
| 43 |
Motif group HL_50537.6
Basepair signature:
|
2.76 | -189.90 | 4 | 4 |
tRNA anticodon loop with synthetase |
| 44 |
Motif group HL_10453.3
Basepair signature:
|
2.76 | -195.79 | 4 | 2 |
tRNA anticodon loop |
| 45 |
Motif group HL_80709.3
Basepair signature:
|
2.41 | -58.12 | 2 | 2 |
|
| 46 |
Motif group HL_86870.2
Basepair signature:
|
2.41 | -59.18 | 2 | 2 |
|
| 47 |
Motif group HL_65313.1
Basepair signature:
|
2.41 | -121.82 | 4 | 4 |
|
| 48 |
Motif group HL_89893.1
Basepair signature:
|
2.41 | -159.86 | 3 | 3 |
|
| 49 |
Motif group HL_97917.2
Basepair signature:
|
2.41 | -193.42 | 3 | 3 |
|
| 50 |
Motif group HL_67667.2
Basepair signature:
|
2.41 | -315.02 | 3 | 3 |
|
| 51 |
Motif group HL_22622.1
Basepair signature:
|
2.41 | -1434.15 | 3 | 3 |
|
| 52 |
Motif group HL_81100.2
Basepair signature:
|
2.07 | -284.45 | 3 | 3 |
|
| 53 |
Motif group HL_08100.1
Basepair signature:
|
1.72 | -45.72 | 3 | 3 |
|
| 54 |
Motif group HL_13189.1
Basepair signature:
|
1.72 | -61.33 | 4 | 3 |
|
| 55 |
Motif group HL_78347.4
Basepair signature:
|
1.38 | -59.25 | 3 | 3 |
|
| 56 |
Motif group HL_49922.4
Basepair signature:
|
1.03 | -27.59 | 2 | 2 |
|
| 57 |
Motif group HL_66103.1
Basepair signature:
|
1.03 | -41.03 | 3 | 3 |
|
| 58 |
Motif group HL_48778.2
Basepair signature:
|
1.03 | -64.48 | 2 | 2 |
Mini UNCG |
| 59 |
Motif group HL_62934.1
Basepair signature:
|
1.03 | -70.16 | 3 | 3 |
|
| 60 |
Motif group HL_52953.3
Basepair signature:
|
1.03 | -338.34 | 2 | 2 |
|
| 61 |
Motif group HL_99748.1
Basepair signature:
|
0.69 | -191.88 | 5 | 5 |
Other HL |
| 62 |
Motif group HL_59843.1
Basepair signature:
|
0.69 | -234.89 | 3 | 3 |
|
| 63 |
Motif group HL_43517.1
Basepair signature:
|
0.34 | -33.86 | 4 | 2 |
|
| 64 |
Motif group HL_32346.4
Basepair signature:
|
0.34 | -91.06 | 2 | 2 |
|
| 65 |
Motif group HL_29966.1
Basepair signature:
|
0.34 | -96.14 | 5 | 3 |
|
| 66 |
Motif group HL_31585.4
Basepair signature:
|
0.34 | -234.69 | 3 | 2 |
Purine riboswitch |
| 67 |
Motif group HL_37344.1
Basepair signature:
|
0.34 | -235.27 | 4 | 4 |
|
| 68 |
Motif group HL_47787.2
Basepair signature:
|
0.34 | -283.81 | 3 | 2 |
|
| 69 |
Motif group HL_28791.1
Basepair signature:
|
0.34 | -385.69 | 3 | 3 |
|
| 70 |
Motif group HL_20167.2
Basepair signature:
|
0.00 | -30.93 | 4 | 2 |
|
| 71 |
Motif group HL_26934.1
Basepair signature:
|
0.00 | -34.44 | 5 | 3 |
|
| 72 |
Motif group HL_61996.2
Basepair signature:
|
0.00 | -42.03 | 4 | 2 |
|
| 73 |
Motif group HL_50860.2
Basepair signature:
|
0.00 | -53.46 | 5 | 3 |
|
| 74 |
Motif group HL_22584.6
Basepair signature:
|
0.00 | -56.16 | 2 | 2 |
Fab BL3-6 binding hairpin with tSW |
| 75 |
Motif group HL_86012.1
Basepair signature:
|
0.00 | -56.33 | 6 | 4 |
T-loop with unstacked turn |
| 76 |
Motif group HL_02887.3
Basepair signature:
|
0.00 | -57.03 | 4 | 3 |
T-loop with 3 stacked bulged bases |
| 77 |
Motif group HL_89567.2
Basepair signature:
|
0.00 | -60.91 | 4 | 2 |
|
| 78 |
Motif group HL_73266.9
Basepair signature:
|
0.00 | -63.88 | 4 | 3 |
|
| 79 |
Motif group HL_13963.3
Basepair signature:
|
0.00 | -67.55 | 4 | 4 |
|
| 80 |
Motif group HL_15802.1
Basepair signature:
|
0.00 | -71.47 | 5 | 5 |
|
| 81 |
Motif group HL_93438.2
Basepair signature:
|
0.00 | -74.32 | 4 | 4 |
|
| 82 |
Motif group HL_20743.5
Basepair signature:
|
0.00 | -77.35 | 5 | 4 |
|
| 83 |
Motif group HL_81545.2
Basepair signature:
|
0.00 | -78.70 | 5 | 3 |
|
| 84 |
Motif group HL_37369.2
Basepair signature:
|
0.00 | -79.89 | 4 | 3 |
|
| 85 |
Motif group HL_28252.8
Basepair signature:
|
0.00 | -82.73 | 4 | 2 |
T-loop with 2 stacked bulged bases |
| 86 |
Motif group HL_86883.1
Basepair signature:
|
0.00 | -85.20 | 4 | 2 |
|
| 87 |
Motif group HL_04171.7
Basepair signature:
|
0.00 | -93.83 | 5 | 4 |
|
| 88 |
Motif group HL_67079.1
Basepair signature:
|
0.00 | -96.31 | 6 | 4 |
|
| 89 |
Motif group HL_83808.4
Basepair signature:
|
0.00 | -97.15 | 6 | 6 |
Pseudoknot |
| 90 |
Motif group HL_36335.1
Basepair signature:
|
0.00 | -105.42 | 5 | 5 |
|
| 91 |
Motif group HL_18978.1
Basepair signature:
|
0.00 | -110.78 | 6 | 6 |
|
| 92 |
Motif group HL_06226.4
Basepair signature:
|
0.00 | -116.44 | 5 | 4 |
|
| 93 |
Motif group HL_27483.1
Basepair signature:
|
0.00 | -118.95 | 3 | 3 |
|
| 94 |
Motif group HL_42046.2
Basepair signature:
|
0.00 | -119.30 | 4 | 4 |
|
| 95 |
Motif group HL_18423.1
Basepair signature:
|
0.00 | -122.83 | 6 | 5 |
|
| 96 |
Motif group HL_78677.1
Basepair signature:
|
0.00 | -125.38 | 5 | 3 |
|
| 97 |
Motif group HL_41543.1
Basepair signature:
|
0.00 | -126.64 | 8 | 6 |
|
| 98 |
Motif group HL_32392.1
Basepair signature:
|
0.00 | -131.05 | 5 | 4 |
|
| 99 |
Motif group HL_01962.2
Basepair signature:
|
0.00 | -134.30 | 6 | 5 |
|
| 100 |
Motif group HL_34617.5
Basepair signature:
|
0.00 | -136.59 | 3 | 3 |
UNCG |
| 101 |
Motif group HL_90620.1
Basepair signature:
|
0.00 | -137.26 | 7 | 6 |
|
| 102 |
Motif group HL_91939.2
Basepair signature:
|
0.00 | -140.38 | 7 | 6 |
|
| 103 |
Motif group HL_35941.1
Basepair signature:
|
0.00 | -141.80 | 4 | 4 |
|
| 104 |
Motif group HL_60266.1
Basepair signature:
|
0.00 | -143.73 | 7 | 6 |
|
| 105 |
Motif group HL_41902.1
Basepair signature:
|
0.00 | -146.99 | 8 | 7 |
|
| 106 |
Motif group HL_74379.3
Basepair signature:
|
0.00 | -147.74 | 8 | 7 |
|
| 107 |
Motif group HL_25847.2
Basepair signature:
|
0.00 | -148.14 | 6 | 5 |
|
| 108 |
Motif group HL_87463.1
Basepair signature:
|
0.00 | -148.36 | 5 | 3 |
|
| 109 |
Motif group HL_57863.1
Basepair signature:
|
0.00 | -150.33 | 6 | 4 |
G-quadruplex fragment |
| 110 |
Motif group HL_49941.1
Basepair signature:
|
0.00 | -155.12 | 6 | 6 |
tRNA D-loop |
| 111 |
Motif group HL_70658.1
Basepair signature:
|
0.00 | -164.41 | 8 | 7 |
|
| 112 |
Motif group HL_26631.1
Basepair signature:
|
0.00 | -165.32 | 3 | 3 |
|
| 113 |
Motif group HL_53504.3
Basepair signature:
|
0.00 | -166.38 | 6 | 5 |
|
| 114 |
Motif group HL_86109.1
Basepair signature:
|
0.00 | -166.82 | 8 | 7 |
|
| 115 |
Motif group HL_98864.1
Basepair signature:
|
0.00 | -167.70 | 6 | 4 |
T-loop with unstacked turn |
| 116 |
Motif group HL_27670.2
Basepair signature:
|
0.00 | -171.18 | 4 | 2 |
T-loop with unstacked turn |
| 117 |
Motif group HL_84847.1
Basepair signature:
|
0.00 | -184.23 | 9 | 7 |
|
| 118 |
Motif group HL_07583.1
Basepair signature:
|
0.00 | -184.73 | 8 | 7 |
|
| 119 |
Motif group HL_81205.3
Basepair signature:
|
0.00 | -187.35 | 8 | 8 |
|
| 120 |
Motif group HL_75293.5
Basepair signature:
|
0.00 | -192.77 | 3 | 3 |
|
| 121 |
Motif group HL_04641.1
Basepair signature:
|
0.00 | -193.66 | 5 | 5 |
|
| 122 |
Motif group HL_13971.1
Basepair signature:
|
0.00 | -197.71 | 10 | 8 |
|
| 123 |
Motif group HL_58224.1
Basepair signature:
|
0.00 | -198.02 | 6 | 6 |
|
| 124 |
Motif group HL_84299.4
Basepair signature:
|
0.00 | -199.29 | 5 | 3 |
|
| 125 |
Motif group HL_16991.1
Basepair signature:
|
0.00 | -200.48 | 7 | 5 |
G-quadruplex fragment |
| 126 |
Motif group HL_20535.2
Basepair signature:
|
0.00 | -201.33 | 5 | 3 |
|
| 127 |
Motif group HL_00914.1
Basepair signature:
|
0.00 | -204.63 | 5 | 3 |
|
| 128 |
Motif group HL_66853.7
Basepair signature:
|
0.00 | -205.97 | 5 | 5 |
|
| 129 |
Motif group HL_89881.5
Basepair signature:
|
0.00 | -207.81 | 6 | 4 |
|
| 130 |
Motif group HL_74055.2
Basepair signature:
|
0.00 | -210.04 | 8 | 8 |
|
| 131 |
Motif group HL_40252.4
Basepair signature:
|
0.00 | -210.27 | 7 | 7 |
|
| 132 |
Motif group HL_06059.6
Basepair signature:
|
0.00 | -211.09 | 3 | 3 |
tRNA anticodon loop |
| 133 |
Motif group HL_04642.1
Basepair signature:
|
0.00 | -213.77 | 6 | 6 |
tRNA D-loop |
| 134 |
Motif group HL_02817.2
Basepair signature:
|
0.00 | -215.56 | 3 | 3 |
|
| 135 |
Motif group HL_76094.1
Basepair signature:
|
0.00 | -216.58 | 3 | 2 |
|
| 136 |
Motif group HL_47854.1
Basepair signature:
|
0.00 | -217.00 | 6 | 4 |
|
| 137 |
Motif group HL_68767.1
Basepair signature:
|
0.00 | -220.00 | 9 | 7 |
tRNA D-loop |
| 138 |
Motif group HL_68257.1
Basepair signature:
|
0.00 | -223.01 | 6 | 6 |
|
| 139 |
Motif group HL_45785.1
Basepair signature:
|
0.00 | -224.99 | 9 | 7 |
|
| 140 |
Motif group HL_98252.1
Basepair signature:
|
0.00 | -226.41 | 7 | 5 |
|
| 141 |
Motif group HL_38168.1
Basepair signature:
|
0.00 | -226.80 | 3 | 3 |
|
| 142 |
Motif group HL_64690.6
Basepair signature:
|
0.00 | -228.78 | 5 | 4 |
|
| 143 |
Motif group HL_02483.1
Basepair signature:
|
0.00 | -232.34 | 7 | 6 |
|
| 144 |
Motif group HL_15574.1
Basepair signature:
|
0.00 | -236.72 | 4 | 3 |
|
| 145 |
Motif group HL_21372.1
Basepair signature:
|
0.00 | -238.13 | 5 | 4 |
|
| 146 |
Motif group HL_23509.1
Basepair signature:
|
0.00 | -241.08 | 9 | 7 |
|
| 147 |
Motif group HL_05304.3
Basepair signature:
|
0.00 | -245.30 | 8 | 6 |
|
| 148 |
Motif group HL_73247.1
Basepair signature:
|
0.00 | -245.88 | 9 | 9 |
Pseudoknot geometry |
| 149 |
Motif group HL_77082.1
Basepair signature:
|
0.00 | -246.30 | 3 | 3 |
Pseudoknot geometry |
| 150 |
Motif group HL_23010.1
Basepair signature:
|
0.00 | -246.57 | 7 | 7 |
|
| 151 |
Motif group HL_08602.1
Basepair signature:
|
0.00 | -248.38 | 8 | 8 |
|
| 152 |
Motif group HL_02581.1
Basepair signature:
|
0.00 | -249.51 | 9 | 9 |
tRNA D-loop |
| 153 |
Motif group HL_07480.2
Basepair signature:
|
0.00 | -249.85 | 8 | 7 |
|
| 154 |
Motif group HL_98870.1
Basepair signature:
|
0.00 | -250.39 | 10 | 9 |
|
| 155 |
Motif group HL_34964.1
Basepair signature:
|
0.00 | -252.22 | 6 | 4 |
|
| 156 |
Motif group HL_56676.1
Basepair signature:
|
0.00 | -256.32 | 3 | 3 |
|
| 157 |
Motif group HL_83632.1
Basepair signature:
|
0.00 | -256.96 | 4 | 3 |
tRNA anticodon loop |
| 158 |
Motif group HL_45175.1
Basepair signature:
|
0.00 | -259.27 | 5 | 5 |
tRNA D-loop |
| 159 |
Motif group HL_91641.1
Basepair signature:
|
0.00 | -265.42 | 10 | 10 |
|
| 160 |
Motif group HL_81538.2
Basepair signature:
|
0.00 | -267.00 | 3 | 3 |
GNRA with tandem sheared |
| 161 |
Motif group HL_29129.3
Basepair signature:
|
0.00 | -269.10 | 6 | 4 |
|
| 162 |
Motif group HL_14757.1
Basepair signature:
|
0.00 | -272.06 | 11 | 11 |
|
| 163 |
Motif group HL_53454.2
Basepair signature:
|
0.00 | -273.17 | 5 | 5 |
|
| 164 |
Motif group HL_97733.1
Basepair signature:
|
0.00 | -276.52 | 6 | 6 |
|
| 165 |
Motif group HL_80008.1
Basepair signature:
|
0.00 | -287.53 | 3 | 3 |
|
| 166 |
Motif group HL_99769.3
Basepair signature:
|
0.00 | -288.07 | 6 | 5 |
|
| 167 |
Motif group HL_60914.1
Basepair signature:
|
0.00 | -298.51 | 3 | 3 |
|
| 168 |
Motif group HL_38046.1
Basepair signature:
|
0.00 | -299.29 | 7 | 5 |
|
| 169 |
Motif group HL_38808.1
Basepair signature:
|
0.00 | -300.60 | 4 | 4 |
|
| 170 |
Motif group HL_85367.2
Basepair signature:
|
0.00 | -301.50 | 4 | 3 |
|
| 171 |
Motif group HL_85434.1
Basepair signature:
|
0.00 | -307.54 | 8 | 6 |
|
| 172 |
Motif group HL_93383.1
Basepair signature:
|
0.00 | -329.27 | 4 | 4 |
|
| 173 |
Motif group HL_93616.2
Basepair signature:
|
0.00 | -330.78 | 7 | 7 |
tRNA D-loop |
| 174 |
Motif group HL_97756.2
Basepair signature:
|
0.00 | -333.96 | 10 | 9 |
|
| 175 |
Motif group HL_22135.1
Basepair signature:
|
0.00 | -334.76 | 5 | 4 |
|
| 176 |
Motif group HL_72628.1
Basepair signature:
|
0.00 | -336.78 | 4 | 4 |
|
| 177 |
Motif group HL_11542.1
Basepair signature:
|
0.00 | -370.57 | 8 | 8 |
|
| 178 |
Motif group HL_73255.1
Basepair signature:
|
0.00 | -378.46 | 5 | 5 |
|
| 179 |
Motif group HL_94980.1
Basepair signature:
|
0.00 | -392.61 | 3 | 3 |
|
| 180 |
Motif group HL_51921.1
Basepair signature:
|
0.00 | -412.56 | 15 | 14 |
|
| 181 |
Motif group HL_78197.1
Basepair signature:
|
0.00 | -420.55 | 4 | 3 |
|
| 182 |
Motif group HL_92488.1
Basepair signature:
|
0.00 | -431.22 | 10 | 10 |
|
| 183 |
Motif group HL_88205.2
Basepair signature:
|
0.00 | -448.45 | 4 | 4 |
|
| 184 |
Motif group HL_93324.4
Basepair signature:
|
0.00 | -467.43 | 3 | 3 |
Pseudoknot geometry |
| 185 |
Motif group HL_12870.1
Basepair signature:
|
0.00 | -615.70 | 8 | 7 |
|
| 186 |
Motif group HL_66482.1
Basepair signature:
|
0.00 | -920.18 | 12 | 12 |
|
| 187 |
Motif group HL_10456.1
Basepair signature:
|
0.00 | -920.27 | 11 | 11 |
|
| 188 |
Motif group HL_80599.2
Basepair signature:
|
0.00 | -938.83 | 5 | 4 |
|
| 189 |
Motif group HL_50779.4
Basepair signature:
|
0.00 | -959.33 | 5 | 4 |
|
| 190 |
Motif group HL_20751.2
Basepair signature:
|
0.00 | -1005.31 | 8 | 8 |
|
| 191 |
Motif group HL_23115.1
Basepair signature:
|
0.00 | -1019.84 | 7 | 7 |
tRNA D-loop |
| 192 |
Motif group HL_32735.2
Basepair signature:
|
0.00 | -1023.07 | 4 | 4 |
|
| 193 |
Motif group HL_29762.1
Basepair signature:
|
0.00 | -1023.19 | 5 | 4 |
|
| 194 |
Motif group HL_91503.7
Basepair signature:
|
0.00 | -1024.76 | 6 | 5 |
|
| 195 |
Motif group HL_59330.1
Basepair signature:
|
0.00 | -1036.21 | 5 | 5 |
|
| 196 |
Motif group HL_88558.1
Basepair signature:
|
0.00 | -1073.01 | 7 | 7 |
|
| 197 |
Motif group HL_80411.1
Basepair signature:
|
0.00 | -1078.89 | 7 | 7 |
tRNA D-loop |
| 198 |
Motif group HL_93135.1
Basepair signature:
|
0.00 | -1093.97 | 6 | 5 |
Pseudoknot |
| 199 |
Motif group HL_80362.1
Basepair signature:
|
0.00 | -1098.06 | 4 | 4 |
|
| 200 |
Motif group HL_69139.1
Basepair signature:
|
0.00 | -1176.94 | 5 | 5 |
|
| 201 |
Motif group HL_35677.3
Basepair signature:
|
0.00 | -1232.74 | 5 | 5 |
|
| 202 |
Motif group HL_85993.1
Basepair signature:
|
0.00 | -1262.28 | 4 | 2 |
|
| 203 |
Motif group HL_51447.1
Basepair signature:
|
0.00 | -1283.18 | 3 | 3 |
|
| 204 |
Motif group HL_09452.1
Basepair signature:
|
0.00 | -1323.67 | 5 | 4 |
|
| 205 |
Motif group HL_80241.1
Basepair signature:
|
0.00 | -1377.24 | 4 | 4 |
|
| 206 |
Motif group HL_30680.3
Basepair signature:
|
0.00 | -1665.03 | 4 | 3 |
Pseudoknot geometry |
| 207 |
Motif group HL_99324.1
Basepair signature:
|
0.00 | -4006.15 | 11 | 11 |
|
| 208 |
Motif group HL_33074.4
Basepair signature:
|
0.00 | -4007.63 | 6 | 6 |
U1 small nuclear ribonucleoprotein A binding hairpin |
| 209 |
Motif group HL_85461.1
Basepair signature:
|
0.00 | -4013.10 | 14 | 13 |
|
| 210 |
Motif group HL_60293.1
Basepair signature:
|
0.00 | -4043.94 | 16 | 15 |
G-quadruplex |
| 211 |
Motif group HL_21400.1
Basepair signature:
|
0.00 | -4044.05 | 18 | 16 |
G-quadruplex |
| 212 |
Motif group HL_00317.1
Basepair signature:
|
0.00 | -4050.20 | 16 | 15 |
|
| 213 |
Motif group HL_35354.1
Basepair signature:
|
0.00 | -4058.19 | 19 | 17 |
|
| 214 |
Motif group HL_89346.1
Basepair signature:
|
0.00 | -4066.73 | 12 | 12 |
|
| 215 |
Motif group HL_12758.3
Basepair signature:
|
0.00 | -4084.53 | 19 | 19 |
G-quadruplex |
| 216 |
Motif group HL_59564.1
Basepair signature:
|
0.00 | -4090.75 | 16 | 15 |
|
| 217 |
Motif group HL_50851.1
Basepair signature:
|
0.00 | -4448.50 | 9 | 8 |
G-quadruplex fragment |
| 218 |
Motif group HL_73916.1
Basepair signature:
|
0.00 | -4643.82 | 33 | 33 |
|
| 219 |
Motif group HL_04725.1
Basepair signature:
|
0.00 | -4759.55 | 8 | 6 |
|
| 220 |
Motif group HL_07903.1
Basepair signature:
|
0.00 | -4943.59 | 10 | 8 |
|
| 221 |
Motif group HL_31581.6
Basepair signature:
|
0.00 | -4971.65 | 6 | 6 |
|
| 222 |
Motif group HL_63355.1
Basepair signature:
|
0.00 | -5015.10 | 8 | 8 |
|
| 223 |
Motif group HL_88364.2
Basepair signature:
|
0.00 | -5035.55 | 11 | 10 |
|
| 224 |
Motif group HL_08510.1
Basepair signature:
|
0.00 | -5057.24 | 6 | 4 |
|
| 225 |
Motif group HL_73183.1
Basepair signature:
|
0.00 | -5081.77 | 10 | 9 |
Pseudoknot geometry with G-bulge |
| 226 |
Motif group HL_67407.5
Basepair signature:
|
0.00 | -5145.58 | 7 | 6 |
|
| 227 |
Motif group HL_38649.1
Basepair signature:
|
0.00 | -5150.30 | 5 | 5 |
|
| 228 |
Motif group HL_15118.1
Basepair signature:
|
0.00 | -5319.49 | 6 | 6 |
|
| 229 |
Motif group HL_81312.1
Basepair signature:
|
0.00 | -5377.81 | 7 | 7 |
|
| 230 |
Motif group HL_19210.3
Basepair signature:
|
0.00 | -5391.06 | 4 | 4 |
|
| 231 |
Motif group HL_94376.1
Basepair signature:
|
0.00 | -5398.36 | 8 | 6 |
Pseudoknot geometry |
| 232 |
Motif group HL_55436.1
Basepair signature:
|
0.00 | -5405.60 | 5 | 5 |
|
| 233 |
Motif group HL_55305.1
Basepair signature:
|
0.00 | -5540.67 | 7 | 6 |
|
| 234 |
Motif group HL_70751.1
Basepair signature:
|
0.00 | -5542.20 | 6 | 6 |
|
| 235 |
Motif group HL_01255.1
Basepair signature:
|
0.00 | -5683.95 | 6 | 6 |
|
| 236 |
Motif group HL_36684.4
Basepair signature:
|
0.00 | -5685.26 | 5 | 5 |
|
| 237 |
Motif group HL_78284.1
Basepair signature:
|
0.00 | -5708.22 | 6 | 5 |
|
| 238 |
Motif group HL_24792.1
Basepair signature:
|
0.00 | -5789.16 | 6 | 5 |
|
| 239 |
Motif group HL_50418.1
Basepair signature:
|
0.00 | -5795.96 | 4 | 4 |
|
| 240 |
Motif group HL_16398.2
Basepair signature:
|
0.00 | -5912.20 | 8 | 7 |
|
| 241 |
Motif group HL_68572.1
Basepair signature:
|
0.00 | -5918.94 | 8 | 8 |
|
| 242 |
Motif group HL_74292.1
Basepair signature:
|
0.00 | -6073.66 | 7 | 6 |
|
| 243 |
Motif group HL_47732.1
Basepair signature:
|
0.00 | -6124.39 | 7 | 7 |
|
| 244 |
Motif group HL_64292.1
Basepair signature:
|
0.00 | -6200.89 | 11 | 11 |
|
| 245 |
Motif group HL_29958.1
Basepair signature:
|
0.00 | -6344.70 | 10 | 8 |
|
| 246 |
Motif group HL_99867.1
Basepair signature:
|
0.00 | -6740.14 | 6 | 5 |
|
| 247 |
Motif group HL_42998.2
Basepair signature:
|
0.00 | -6849.70 | 5 | 3 |
|
| 248 |
Motif group HL_20781.1
Basepair signature:
|
0.00 | -7355.28 | 6 | 6 |
|
| 249 |
Motif group HL_58539.1
Basepair signature:
|
0.00 | -8361.36 | 11 | 10 |
|
| 250 |
Motif group HL_97983.1
Basepair signature:
|
0.00 | -8487.54 | 6 | 4 |
|
| 251 |
Motif group HL_77600.2
Basepair signature:
|
0.00 | -9762.50 | 4 | 4 |
|
| 252 |
Motif group HL_07951.3
Basepair signature:
|
0.00 | -9999.00 | 5 | 5 |
tRNA D-loop |
| 253 |
Motif group HL_09260.2
Basepair signature:
|
0.00 | -9999.00 | 7 | 7 |
tRNA D-loop |