JAR3D
Query RF03087-CCF-3.98 completed
Run on Motif Atlas Version
using the Rfam secondary structure. Run with the CaCoFold secondary structure.
Rfam family RF03087 maps to these 30 chains: 9ISV|1|A, 9J3R|1|A, 9J3R|1|B, 9J3R|1|C, 9J3R|1|D, 9J3T|1|A, 9J3T|1|B, 9J3T|1|C, 9J3T|1|D, 9J3T|1|E, 9J3T|1|F, 9J3T|1|G, 9J3T|1|H, 9MM6|1|A, 9MM6|1|E, 9MM6|1|I, 9MM6|1|M, 9MM6|1|Q, 9MM6|1|U, 9MM6|1|Y, 9MM6|1|c, 9MME|1|U, 9MME|1|Y, 9MME|1|c, 9MME|1|g, 9MME|1|k, 9MME|1|o, 9MME|1|s, 9MME|1|w, 9MMG|1|c See more about them at RNA 3D Hub by filtering on the chain or the Rfam family.
Loop 49 Hairpin loop
Column numbers: 1308-1328 - View nucleotides in PDB file(s)
Scored sequences and counts
CGAAG---------------G 114
UGAAUAAAA-----------G 31
UGAAG---------------A 31
CGAAA---------------G 30
GGAAG---------------C 18
GGAAA---------------C 9
AGAAG---------------U 7
UGAACAAAA-----------G 5
CUAAAA--------------A 5
UGAAG---------------G 5
GGAAGUC-------------U 3
GGAGGA--------------C 3
AGAAA---------------U 3
UCCCACGUAAGCCA------A 2
GUUAAUAG------------C 2
GUAAC---------------G 2
UGAAA---------------G 2
-UUGUAUAAGCCGUACACUA- 1
---CCACGUAAGCCAAUACG- 1
CGAACAAAA-----------A 1
UGAACAAAA-----------A 1
UGAAGAAAA-----------G 1
GAUAAAA-------------A 1
AGAAAC--------------A 1
GGAAGC--------------C 1
UGAGAA--------------A 1
UGAGGA--------------A 1
---AGAAAA------------ 1
AAAAC---------------A 1
AGAAA---------------A 1
GGAAG---------------U 1
UGAAA---------------A 1
Omitted sequenced and counts
--------------------- 3
Click on headings to reorder table
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group HL_04783.2
Basepair signature:
|
80.84 | -26.00 | 1 | 1 |
|
| 2 |
Motif group HL_53890.2
Basepair signature:
|
80.84 | -58.98 | 2 | 1 |
|
| 3 |
Motif group HL_50006.2
Basepair signature:
|
79.44 | -68.37 | 1 | 1 |
|
| 4 |
Motif group HL_87954.2
Basepair signature:
|
79.44 | -92.77 | 2 | 1 |
|
| 5 |
Motif group HL_93535.1
Basepair signature:
|
79.09 | -73.09 | 2 | 2 |
|
| 6 |
Motif group HL_65794.5
Basepair signature:
|
79.09 | -150.82 | 2 | 1 |
Pseudoknot geometry |
| 7 |
Motif group HL_37824.7
Basepair signature:
|
78.75 | -0.66 | 0 | 0 |
GNRA |
| 8 |
Motif group HL_80922.2
Basepair signature:
|
78.75 | -51.25 | 2 | 2 |
|
| 9 |
Motif group HL_82710.2
Basepair signature:
|
78.05 | -145.35 | 3 | 1 |
|
| 10 |
Motif group HL_75660.5
Basepair signature:
|
78.05 | -152.46 | 1 | 1 |
|
| 11 |
Motif group HL_52953.3
Basepair signature:
|
77.70 | -156.25 | 2 | 1 |
|
| 12 |
Motif group HL_80709.3
Basepair signature:
|
77.35 | -185.06 | 1 | 1 |
|
| 13 |
Motif group HL_59843.1
Basepair signature:
|
77.00 | -106.12 | 2 | 2 |
|
| 14 |
Motif group HL_57875.1
Basepair signature:
|
77.00 | -155.21 | 2 | 1 |
|
| 15 |
Motif group HL_07886.3
Basepair signature:
|
76.66 | -37.41 | 2 | 1 |
|
| 16 |
Motif group HL_38901.2
Basepair signature:
|
75.26 | -187.72 | 3 | 1 |
tRNA D-loop |
| 17 |
Motif group HL_50318.1
Basepair signature:
|
59.23 | -179.16 | 3 | 3 |
|
| 18 |
Motif group HL_69752.2
Basepair signature:
|
41.46 | -203.30 | 3 | 2 |
|
| 19 |
Motif group HL_97917.2
Basepair signature:
|
19.51 | -92.53 | 4 | 2 |
|
| 20 |
Motif group HL_13963.3
Basepair signature:
|
17.42 | -117.21 | 5 | 3 |
|
| 21 |
Motif group HL_47787.2
Basepair signature:
|
16.03 | -131.60 | 3 | 1 |
|
| 22 |
Motif group HL_62934.1
Basepair signature:
|
16.03 | -140.35 | 3 | 3 |
|
| 23 |
Motif group HL_56676.1
Basepair signature:
|
16.03 | -213.14 | 3 | 2 |
|
| 24 |
Motif group HL_56334.1
Basepair signature:
|
15.68 | -216.90 | 3 | 2 |
Mini UNCG |
| 25 |
Motif group HL_22584.6
Basepair signature:
|
14.98 | -117.08 | 1 | 1 |
Fab BL3-6 binding hairpin with tSW |
| 26 |
Motif group HL_49922.4
Basepair signature:
|
14.98 | -139.04 | 3 | 3 |
|
| 27 |
Motif group HL_38168.1
Basepair signature:
|
14.98 | -207.24 | 2 | 2 |
|
| 28 |
Motif group HL_53504.3
Basepair signature:
|
13.59 | -126.13 | 5 | 4 |
|
| 29 |
Motif group HL_18423.1
Basepair signature:
|
13.59 | -130.54 | 6 | 5 |
|
| 30 |
Motif group HL_68257.1
Basepair signature:
|
13.24 | -105.04 | 7 | 6 |
|
| 31 |
Motif group HL_53454.2
Basepair signature:
|
11.15 | -166.15 | 5 | 4 |
|
| 32 |
Motif group HL_71391.1
Basepair signature:
|
9.41 | -220.06 | 4 | 2 |
|
| 33 |
Motif group HL_57176.2
Basepair signature:
|
5.23 | -206.56 | 2 | 2 |
Pseudoknot geometry with 3' bulge |
| 34 |
Motif group HL_31585.4
Basepair signature:
|
3.14 | -228.48 | 3 | 2 |
Purine riboswitch |
| 35 |
Motif group HL_20535.2
Basepair signature:
|
2.79 | -111.82 | 5 | 4 |
|
| 36 |
Motif group HL_72628.1
Basepair signature:
|
2.44 | -130.60 | 4 | 4 |
|
| 37 |
Motif group HL_51447.1
Basepair signature:
|
2.44 | -6509.72 | 3 | 3 |
|
| 38 |
Motif group HL_59735.5
Basepair signature:
|
2.44 | -8412.83 | 2 | 2 |
|
| 39 |
Motif group HL_77436.5
Basepair signature:
|
2.09 | -120.99 | 2 | 2 |
T-loop related |
| 40 |
Motif group HL_13529.1
Basepair signature:
|
1.74 | -63.28 | 4 | 3 |
|
| 41 |
Motif group HL_15574.1
Basepair signature:
|
1.74 | -286.04 | 4 | 3 |
|
| 42 |
Motif group HL_84299.4
Basepair signature:
|
1.05 | -99.06 | 4 | 3 |
|
| 43 |
Motif group HL_81538.2
Basepair signature:
|
1.05 | -115.36 | 3 | 3 |
GNRA with tandem sheared |
| 44 |
Motif group HL_20743.5
Basepair signature:
|
0.70 | -64.76 | 4 | 3 |
|
| 45 |
Motif group HL_20167.2
Basepair signature:
|
0.70 | -66.76 | 4 | 3 |
|
| 46 |
Motif group HL_61996.2
Basepair signature:
|
0.70 | -96.73 | 5 | 4 |
|
| 47 |
Motif group HL_36335.1
Basepair signature:
|
0.70 | -97.91 | 4 | 4 |
|
| 48 |
Motif group HL_81545.2
Basepair signature:
|
0.70 | -124.89 | 7 | 5 |
|
| 49 |
Motif group HL_75293.5
Basepair signature:
|
0.70 | -137.72 | 5 | 4 |
|
| 50 |
Motif group HL_33983.1
Basepair signature:
|
0.70 | -147.54 | 4 | 4 |
|
| 51 |
Motif group HL_38808.1
Basepair signature:
|
0.70 | -165.65 | 5 | 4 |
|
| 52 |
Motif group HL_21372.1
Basepair signature:
|
0.70 | -298.23 | 6 | 5 |
|
| 53 |
Motif group HL_93383.1
Basepair signature:
|
0.70 | -333.88 | 5 | 4 |
|
| 54 |
Motif group HL_80599.2
Basepair signature:
|
0.70 | -4517.52 | 5 | 5 |
|
| 55 |
Motif group HL_77082.1
Basepair signature:
|
0.35 | -90.94 | 3 | 3 |
Pseudoknot geometry |
| 56 |
Motif group HL_41464.2
Basepair signature:
|
0.35 | -93.02 | 5 | 4 |
|
| 57 |
Motif group HL_86769.4
Basepair signature:
|
0.35 | -94.86 | 5 | 4 |
|
| 58 |
Motif group HL_89567.2
Basepair signature:
|
0.35 | -95.22 | 3 | 3 |
|
| 59 |
Motif group HL_60266.1
Basepair signature:
|
0.35 | -134.17 | 6 | 5 |
|
| 60 |
Motif group HL_89893.1
Basepair signature:
|
0.35 | -177.87 | 3 | 3 |
|
| 61 |
Motif group HL_88205.2
Basepair signature:
|
0.35 | -385.25 | 5 | 5 |
|
| 62 |
Motif group HL_74292.1
Basepair signature:
|
0.35 | -5154.69 | 6 | 5 |
|
| 63 |
Motif group HL_48417.5
Basepair signature:
|
0.00 | -45.51 | 2 | 2 |
|
| 64 |
Motif group HL_10540.1
Basepair signature:
|
0.00 | -48.41 | 2 | 1 |
|
| 65 |
Motif group HL_20811.4
Basepair signature:
|
0.00 | -49.73 | 2 | 2 |
tRNA D-loop |
| 66 |
Motif group HL_57863.1
Basepair signature:
|
0.00 | -71.72 | 5 | 4 |
G-quadruplex fragment |
| 67 |
Motif group HL_78347.4
Basepair signature:
|
0.00 | -77.74 | 4 | 3 |
|
| 68 |
Motif group HL_50860.2
Basepair signature:
|
0.00 | -77.81 | 5 | 4 |
|
| 69 |
Motif group HL_93438.2
Basepair signature:
|
0.00 | -83.24 | 5 | 4 |
|
| 70 |
Motif group HL_01609.3
Basepair signature:
|
0.00 | -88.61 | 3 | 3 |
T-loop with 2 bulged bases not stacked |
| 71 |
Motif group HL_18565.1
Basepair signature:
|
0.00 | -90.63 | 4 | 3 |
|
| 72 |
Motif group HL_64690.6
Basepair signature:
|
0.00 | -91.63 | 5 | 4 |
|
| 73 |
Motif group HL_02887.3
Basepair signature:
|
0.00 | -94.58 | 5 | 5 |
T-loop with 3 stacked bulged bases |
| 74 |
Motif group HL_25061.1
Basepair signature:
|
0.00 | -95.50 | 4 | 3 |
|
| 75 |
Motif group HL_98864.1
Basepair signature:
|
0.00 | -101.35 | 6 | 5 |
T-loop with unstacked turn |
| 76 |
Motif group HL_87553.1
Basepair signature:
|
0.00 | -101.43 | 4 | 3 |
|
| 77 |
Motif group HL_73266.9
Basepair signature:
|
0.00 | -101.62 | 5 | 4 |
|
| 78 |
Motif group HL_86012.1
Basepair signature:
|
0.00 | -108.09 | 6 | 5 |
T-loop with unstacked turn |
| 79 |
Motif group HL_26934.1
Basepair signature:
|
0.00 | -112.25 | 7 | 5 |
|
| 80 |
Motif group HL_86870.2
Basepair signature:
|
0.00 | -114.88 | 2 | 2 |
|
| 81 |
Motif group HL_66853.7
Basepair signature:
|
0.00 | -115.65 | 5 | 5 |
|
| 82 |
Motif group HL_87463.1
Basepair signature:
|
0.00 | -115.96 | 7 | 5 |
|
| 83 |
Motif group HL_85434.1
Basepair signature:
|
0.00 | -119.28 | 7 | 6 |
|
| 84 |
Motif group HL_04642.1
Basepair signature:
|
0.00 | -120.68 | 6 | 6 |
tRNA D-loop |
| 85 |
Motif group HL_04259.3
Basepair signature:
|
0.00 | -121.10 | 3 | 3 |
GNRA with extra cWW |
| 86 |
Motif group HL_28075.1
Basepair signature:
|
0.00 | -123.13 | 3 | 3 |
|
| 87 |
Motif group HL_28252.8
Basepair signature:
|
0.00 | -124.12 | 5 | 3 |
T-loop with 2 stacked bulged bases |
| 88 |
Motif group HL_83808.4
Basepair signature:
|
0.00 | -129.15 | 7 | 6 |
Pseudoknot |
| 89 |
Motif group HL_06226.4
Basepair signature:
|
0.00 | -129.41 | 6 | 5 |
|
| 90 |
Motif group HL_30068.2
Basepair signature:
|
0.00 | -129.65 | 4 | 2 |
|
| 91 |
Motif group HL_16991.1
Basepair signature:
|
0.00 | -133.78 | 8 | 6 |
G-quadruplex fragment |
| 92 |
Motif group HL_90620.1
Basepair signature:
|
0.00 | -135.28 | 7 | 6 |
|
| 93 |
Motif group HL_04641.1
Basepair signature:
|
0.00 | -135.34 | 5 | 5 |
|
| 94 |
Motif group HL_80008.1
Basepair signature:
|
0.00 | -137.39 | 4 | 4 |
|
| 95 |
Motif group HL_50537.6
Basepair signature:
|
0.00 | -137.70 | 5 | 5 |
tRNA anticodon loop with synthetase |
| 96 |
Motif group HL_29129.3
Basepair signature:
|
0.00 | -137.78 | 6 | 6 |
|
| 97 |
Motif group HL_41902.1
Basepair signature:
|
0.00 | -137.84 | 7 | 6 |
|
| 98 |
Motif group HL_18978.1
Basepair signature:
|
0.00 | -138.42 | 6 | 6 |
|
| 99 |
Motif group HL_89881.5
Basepair signature:
|
0.00 | -138.99 | 6 | 5 |
|
| 100 |
Motif group HL_04171.7
Basepair signature:
|
0.00 | -139.82 | 6 | 5 |
|
| 101 |
Motif group HL_99769.3
Basepair signature:
|
0.00 | -140.00 | 7 | 6 |
|
| 102 |
Motif group HL_15802.1
Basepair signature:
|
0.00 | -141.29 | 6 | 6 |
|
| 103 |
Motif group HL_56131.2
Basepair signature:
|
0.00 | -142.33 | 5 | 3 |
|
| 104 |
Motif group HL_58224.1
Basepair signature:
|
0.00 | -144.11 | 6 | 6 |
|
| 105 |
Motif group HL_02483.1
Basepair signature:
|
0.00 | -144.47 | 6 | 6 |
|
| 106 |
Motif group HL_85367.2
Basepair signature:
|
0.00 | -148.29 | 4 | 3 |
|
| 107 |
Motif group HL_98252.1
Basepair signature:
|
0.00 | -149.14 | 9 | 7 |
|
| 108 |
Motif group HL_41543.1
Basepair signature:
|
0.00 | -152.97 | 8 | 7 |
|
| 109 |
Motif group HL_83632.1
Basepair signature:
|
0.00 | -153.18 | 5 | 4 |
tRNA anticodon loop |
| 110 |
Motif group HL_93324.4
Basepair signature:
|
0.00 | -154.21 | 2 | 2 |
Pseudoknot geometry |
| 111 |
Motif group HL_67079.1
Basepair signature:
|
0.00 | -155.54 | 7 | 6 |
|
| 112 |
Motif group HL_38046.1
Basepair signature:
|
0.00 | -156.09 | 6 | 5 |
|
| 113 |
Motif group HL_27670.2
Basepair signature:
|
0.00 | -156.82 | 5 | 3 |
T-loop with unstacked turn |
| 114 |
Motif group HL_74379.3
Basepair signature:
|
0.00 | -158.80 | 8 | 7 |
|
| 115 |
Motif group HL_01962.2
Basepair signature:
|
0.00 | -159.08 | 7 | 6 |
|
| 116 |
Motif group HL_86109.1
Basepair signature:
|
0.00 | -161.43 | 8 | 7 |
|
| 117 |
Motif group HL_45175.1
Basepair signature:
|
0.00 | -163.20 | 5 | 5 |
tRNA D-loop |
| 118 |
Motif group HL_70658.1
Basepair signature:
|
0.00 | -163.37 | 8 | 7 |
|
| 119 |
Motif group HL_97733.1
Basepair signature:
|
0.00 | -163.74 | 6 | 5 |
|
| 120 |
Motif group HL_93616.2
Basepair signature:
|
0.00 | -164.08 | 7 | 7 |
tRNA D-loop |
| 121 |
Motif group HL_23010.1
Basepair signature:
|
0.00 | -164.94 | 7 | 7 |
|
| 122 |
Motif group HL_91939.2
Basepair signature:
|
0.00 | -167.59 | 6 | 6 |
|
| 123 |
Motif group HL_45785.1
Basepair signature:
|
0.00 | -168.54 | 9 | 8 |
|
| 124 |
Motif group HL_34617.5
Basepair signature:
|
0.00 | -170.33 | 2 | 1 |
UNCG |
| 125 |
Motif group HL_25847.2
Basepair signature:
|
0.00 | -172.49 | 7 | 6 |
|
| 126 |
Motif group HL_78197.1
Basepair signature:
|
0.00 | -174.38 | 5 | 3 |
|
| 127 |
Motif group HL_42046.2
Basepair signature:
|
0.00 | -174.71 | 3 | 3 |
|
| 128 |
Motif group HL_23509.1
Basepair signature:
|
0.00 | -178.92 | 9 | 8 |
|
| 129 |
Motif group HL_37344.1
Basepair signature:
|
0.00 | -182.08 | 4 | 4 |
|
| 130 |
Motif group HL_47854.1
Basepair signature:
|
0.00 | -184.08 | 5 | 3 |
|
| 131 |
Motif group HL_49941.1
Basepair signature:
|
0.00 | -185.32 | 7 | 7 |
tRNA D-loop |
| 132 |
Motif group HL_99748.1
Basepair signature:
|
0.00 | -185.33 | 5 | 5 |
Other HL |
| 133 |
Motif group HL_05304.3
Basepair signature:
|
0.00 | -190.18 | 9 | 8 |
|
| 134 |
Motif group HL_68767.1
Basepair signature:
|
0.00 | -193.54 | 8 | 7 |
tRNA D-loop |
| 135 |
Motif group HL_10453.3
Basepair signature:
|
0.00 | -197.74 | 5 | 4 |
tRNA anticodon loop |
| 136 |
Motif group HL_40252.4
Basepair signature:
|
0.00 | -198.28 | 7 | 7 |
|
| 137 |
Motif group HL_81205.3
Basepair signature:
|
0.00 | -198.53 | 8 | 8 |
|
| 138 |
Motif group HL_07583.1
Basepair signature:
|
0.00 | -201.36 | 9 | 8 |
|
| 139 |
Motif group HL_13189.1
Basepair signature:
|
0.00 | -202.06 | 3 | 2 |
|
| 140 |
Motif group HL_66103.1
Basepair signature:
|
0.00 | -202.46 | 3 | 3 |
|
| 141 |
Motif group HL_07480.2
Basepair signature:
|
0.00 | -202.71 | 8 | 7 |
|
| 142 |
Motif group HL_11542.1
Basepair signature:
|
0.00 | -205.73 | 8 | 8 |
|
| 143 |
Motif group HL_99040.1
Basepair signature:
|
0.00 | -210.47 | 4 | 3 |
|
| 144 |
Motif group HL_84847.1
Basepair signature:
|
0.00 | -211.76 | 9 | 9 |
|
| 145 |
Motif group HL_06059.6
Basepair signature:
|
0.00 | -212.59 | 4 | 3 |
tRNA anticodon loop |
| 146 |
Motif group HL_39243.1
Basepair signature:
|
0.00 | -213.78 | 5 | 3 |
|
| 147 |
Motif group HL_74055.2
Basepair signature:
|
0.00 | -215.98 | 9 | 9 |
|
| 148 |
Motif group HL_08100.1
Basepair signature:
|
0.00 | -216.05 | 4 | 4 |
|
| 149 |
Motif group HL_70782.2
Basepair signature:
|
0.00 | -219.22 | 4 | 3 |
|
| 150 |
Motif group HL_46501.1
Basepair signature:
|
0.00 | -219.63 | 2 | 2 |
|
| 151 |
Motif group HL_25967.2
Basepair signature:
|
0.00 | -221.65 | 6 | 4 |
|
| 152 |
Motif group HL_34964.1
Basepair signature:
|
0.00 | -221.87 | 7 | 6 |
|
| 153 |
Motif group HL_00914.1
Basepair signature:
|
0.00 | -222.15 | 5 | 3 |
|
| 154 |
Motif group HL_37369.2
Basepair signature:
|
0.00 | -222.74 | 3 | 3 |
|
| 155 |
Motif group HL_55195.3
Basepair signature:
|
0.00 | -225.10 | 2 | 2 |
|
| 156 |
Motif group HL_08602.1
Basepair signature:
|
0.00 | -230.18 | 9 | 9 |
|
| 157 |
Motif group HL_29966.1
Basepair signature:
|
0.00 | -231.34 | 5 | 3 |
|
| 158 |
Motif group HL_02817.2
Basepair signature:
|
0.00 | -232.07 | 4 | 4 |
|
| 159 |
Motif group HL_89199.2
Basepair signature:
|
0.00 | -239.38 | 3 | 3 |
Mini UNCG |
| 160 |
Motif group HL_73255.1
Basepair signature:
|
0.00 | -243.13 | 6 | 6 |
|
| 161 |
Motif group HL_28791.1
Basepair signature:
|
0.00 | -244.77 | 3 | 3 |
|
| 162 |
Motif group HL_32346.4
Basepair signature:
|
0.00 | -248.05 | 2 | 2 |
|
| 163 |
Motif group HL_73247.1
Basepair signature:
|
0.00 | -255.14 | 10 | 10 |
Pseudoknot geometry |
| 164 |
Motif group HL_27483.1
Basepair signature:
|
0.00 | -256.16 | 3 | 3 |
|
| 165 |
Motif group HL_98870.1
Basepair signature:
|
0.00 | -263.21 | 10 | 9 |
|
| 166 |
Motif group HL_32392.1
Basepair signature:
|
0.00 | -266.59 | 5 | 3 |
|
| 167 |
Motif group HL_48778.2
Basepair signature:
|
0.00 | -267.67 | 2 | 2 |
Mini UNCG |
| 168 |
Motif group HL_43517.1
Basepair signature:
|
0.00 | -268.94 | 4 | 4 |
|
| 169 |
Motif group HL_02581.1
Basepair signature:
|
0.00 | -270.57 | 10 | 10 |
tRNA D-loop |
| 170 |
Motif group HL_86883.1
Basepair signature:
|
0.00 | -275.47 | 5 | 3 |
|
| 171 |
Motif group HL_65313.1
Basepair signature:
|
0.00 | -276.97 | 4 | 4 |
|
| 172 |
Motif group HL_67667.2
Basepair signature:
|
0.00 | -277.12 | 4 | 4 |
|
| 173 |
Motif group HL_91641.1
Basepair signature:
|
0.00 | -279.32 | 12 | 11 |
|
| 174 |
Motif group HL_14757.1
Basepair signature:
|
0.00 | -297.98 | 13 | 13 |
|
| 175 |
Motif group HL_13971.1
Basepair signature:
|
0.00 | -326.75 | 11 | 10 |
|
| 176 |
Motif group HL_51921.1
Basepair signature:
|
0.00 | -364.25 | 15 | 15 |
|
| 177 |
Motif group HL_55436.1
Basepair signature:
|
0.00 | -396.08 | 5 | 5 |
|
| 178 |
Motif group HL_92488.1
Basepair signature:
|
0.00 | -425.47 | 11 | 10 |
|
| 179 |
Motif group HL_38649.1
Basepair signature:
|
0.00 | -426.52 | 7 | 7 |
|
| 180 |
Motif group HL_08510.1
Basepair signature:
|
0.00 | -462.85 | 8 | 6 |
|
| 181 |
Motif group HL_97756.2
Basepair signature:
|
0.00 | -524.79 | 11 | 10 |
|
| 182 |
Motif group HL_42998.2
Basepair signature:
|
0.00 | -577.22 | 4 | 3 |
|
| 183 |
Motif group HL_78677.1
Basepair signature:
|
0.00 | -1640.70 | 4 | 2 |
|
| 184 |
Motif group HL_22135.1
Basepair signature:
|
0.00 | -1676.22 | 4 | 3 |
|
| 185 |
Motif group HL_35941.1
Basepair signature:
|
0.00 | -1678.12 | 4 | 3 |
|
| 186 |
Motif group HL_60914.1
Basepair signature:
|
0.00 | -1688.83 | 4 | 3 |
|
| 187 |
Motif group HL_26631.1
Basepair signature:
|
0.00 | -1697.14 | 3 | 3 |
|
| 188 |
Motif group HL_81100.2
Basepair signature:
|
0.00 | -1703.04 | 3 | 3 |
|
| 189 |
Motif group HL_12870.1
Basepair signature:
|
0.00 | -1769.71 | 9 | 8 |
|
| 190 |
Motif group HL_94980.1
Basepair signature:
|
0.00 | -1829.47 | 4 | 4 |
|
| 191 |
Motif group HL_76094.1
Basepair signature:
|
0.00 | -1919.27 | 2 | 2 |
|
| 192 |
Motif group HL_10456.1
Basepair signature:
|
0.00 | -3329.58 | 12 | 12 |
|
| 193 |
Motif group HL_66482.1
Basepair signature:
|
0.00 | -3357.96 | 12 | 12 |
|
| 194 |
Motif group HL_33074.4
Basepair signature:
|
0.00 | -3365.88 | 8 | 8 |
U1 small nuclear ribonucleoprotein A binding hairpin |
| 195 |
Motif group HL_89346.1
Basepair signature:
|
0.00 | -3428.30 | 13 | 13 |
|
| 196 |
Motif group HL_50851.1
Basepair signature:
|
0.00 | -3787.14 | 9 | 8 |
G-quadruplex fragment |
| 197 |
Motif group HL_99324.1
Basepair signature:
|
0.00 | -3951.05 | 11 | 11 |
|
| 198 |
Motif group HL_85461.1
Basepair signature:
|
0.00 | -3962.23 | 15 | 14 |
|
| 199 |
Motif group HL_00317.1
Basepair signature:
|
0.00 | -3995.31 | 16 | 15 |
|
| 200 |
Motif group HL_20751.2
Basepair signature:
|
0.00 | -3995.68 | 8 | 8 |
|
| 201 |
Motif group HL_60293.1
Basepair signature:
|
0.00 | -4000.55 | 17 | 16 |
G-quadruplex |
| 202 |
Motif group HL_21400.1
Basepair signature:
|
0.00 | -4025.02 | 19 | 17 |
G-quadruplex |
| 203 |
Motif group HL_59564.1
Basepair signature:
|
0.00 | -4030.73 | 16 | 15 |
|
| 204 |
Motif group HL_12758.3
Basepair signature:
|
0.00 | -4046.24 | 19 | 19 |
G-quadruplex |
| 205 |
Motif group HL_04725.1
Basepair signature:
|
0.00 | -4058.72 | 9 | 7 |
|
| 206 |
Motif group HL_35354.1
Basepair signature:
|
0.00 | -4059.50 | 19 | 18 |
|
| 207 |
Motif group HL_07903.1
Basepair signature:
|
0.00 | -4225.84 | 12 | 10 |
|
| 208 |
Motif group HL_31581.6
Basepair signature:
|
0.00 | -4231.42 | 8 | 8 |
|
| 209 |
Motif group HL_73183.1
Basepair signature:
|
0.00 | -4241.92 | 10 | 9 |
Pseudoknot geometry with G-bulge |
| 210 |
Motif group HL_63355.1
Basepair signature:
|
0.00 | -4259.78 | 8 | 8 |
|
| 211 |
Motif group HL_23115.1
Basepair signature:
|
0.00 | -4284.95 | 7 | 7 |
tRNA D-loop |
| 212 |
Motif group HL_67407.5
Basepair signature:
|
0.00 | -4302.96 | 6 | 6 |
|
| 213 |
Motif group HL_50779.4
Basepair signature:
|
0.00 | -4323.08 | 6 | 4 |
|
| 214 |
Motif group HL_91503.7
Basepair signature:
|
0.00 | -4446.55 | 7 | 6 |
|
| 215 |
Motif group HL_88558.1
Basepair signature:
|
0.00 | -4451.53 | 7 | 7 |
|
| 216 |
Motif group HL_81312.1
Basepair signature:
|
0.00 | -4483.06 | 8 | 8 |
|
| 217 |
Motif group HL_80411.1
Basepair signature:
|
0.00 | -4498.96 | 7 | 7 |
tRNA D-loop |
| 218 |
Motif group HL_19210.3
Basepair signature:
|
0.00 | -4516.81 | 5 | 5 |
|
| 219 |
Motif group HL_29762.1
Basepair signature:
|
0.00 | -4529.80 | 6 | 5 |
|
| 220 |
Motif group HL_15118.1
Basepair signature:
|
0.00 | -4542.68 | 8 | 8 |
|
| 221 |
Motif group HL_73916.1
Basepair signature:
|
0.00 | -4593.35 | 34 | 34 |
|
| 222 |
Motif group HL_94376.1
Basepair signature:
|
0.00 | -4598.10 | 7 | 7 |
Pseudoknot geometry |
| 223 |
Motif group HL_55305.1
Basepair signature:
|
0.00 | -4638.99 | 8 | 7 |
|
| 224 |
Motif group HL_01255.1
Basepair signature:
|
0.00 | -4738.49 | 7 | 7 |
|
| 225 |
Motif group HL_32735.2
Basepair signature:
|
0.00 | -4773.10 | 5 | 4 |
|
| 226 |
Motif group HL_93135.1
Basepair signature:
|
0.00 | -4781.15 | 7 | 7 |
Pseudoknot |
| 227 |
Motif group HL_78284.1
Basepair signature:
|
0.00 | -4880.66 | 6 | 6 |
|
| 228 |
Motif group HL_16398.2
Basepair signature:
|
0.00 | -4929.83 | 8 | 7 |
|
| 229 |
Motif group HL_88364.2
Basepair signature:
|
0.00 | -4980.52 | 12 | 11 |
|
| 230 |
Motif group HL_24792.1
Basepair signature:
|
0.00 | -5064.81 | 7 | 6 |
|
| 231 |
Motif group HL_59330.1
Basepair signature:
|
0.00 | -5097.03 | 6 | 5 |
|
| 232 |
Motif group HL_47732.1
Basepair signature:
|
0.00 | -5099.36 | 8 | 8 |
|
| 233 |
Motif group HL_64292.1
Basepair signature:
|
0.00 | -5188.71 | 11 | 11 |
|
| 234 |
Motif group HL_69139.1
Basepair signature:
|
0.00 | -5196.69 | 7 | 7 |
|
| 235 |
Motif group HL_29958.1
Basepair signature:
|
0.00 | -5319.87 | 10 | 9 |
|
| 236 |
Motif group HL_35677.3
Basepair signature:
|
0.00 | -5330.68 | 6 | 5 |
|
| 237 |
Motif group HL_70751.1
Basepair signature:
|
0.00 | -5461.63 | 6 | 6 |
|
| 238 |
Motif group HL_36684.4
Basepair signature:
|
0.00 | -5611.96 | 6 | 5 |
|
| 239 |
Motif group HL_50418.1
Basepair signature:
|
0.00 | -5738.21 | 6 | 6 |
|
| 240 |
Motif group HL_80362.1
Basepair signature:
|
0.00 | -5738.79 | 5 | 5 |
|
| 241 |
Motif group HL_99867.1
Basepair signature:
|
0.00 | -5741.47 | 6 | 5 |
|
| 242 |
Motif group HL_68572.1
Basepair signature:
|
0.00 | -5841.52 | 8 | 8 |
|
| 243 |
Motif group HL_20781.1
Basepair signature:
|
0.00 | -6133.42 | 6 | 6 |
|
| 244 |
Motif group HL_80241.1
Basepair signature:
|
0.00 | -6257.20 | 5 | 3 |
|
| 245 |
Motif group HL_85993.1
Basepair signature:
|
0.00 | -6465.50 | 5 | 3 |
|
| 246 |
Motif group HL_22622.1
Basepair signature:
|
0.00 | -6855.72 | 4 | 4 |
|
| 247 |
Motif group HL_09452.1
Basepair signature:
|
0.00 | -6874.48 | 5 | 4 |
|
| 248 |
Motif group HL_58539.1
Basepair signature:
|
0.00 | -7082.54 | 12 | 11 |
|
| 249 |
Motif group HL_97983.1
Basepair signature:
|
0.00 | -7336.32 | 7 | 5 |
|
| 250 |
Motif group HL_77600.2
Basepair signature:
|
0.00 | -8303.78 | 4 | 3 |
|
| 251 |
Motif group HL_30680.3
Basepair signature:
|
0.00 | -8431.20 | 4 | 3 |
Pseudoknot geometry |
| 252 |
Motif group HL_07951.3
Basepair signature:
|
0.00 | -9999.00 | 5 | 5 |
tRNA D-loop |
| 253 |
Motif group HL_09260.2
Basepair signature:
|
0.00 | -9999.00 | 7 | 7 |
tRNA D-loop |