4V6O Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| # | loop id | location | annotation (mapped to, source) | motif group (similar to) |
|---|---|---|---|---|
| 1/AA/12:22 | NA | NA | ||
| 1/AA/81:88 | NA | NA | ||
| 1/AA/158:163 | NA | NA | ||
| 1/AA/186:191 | NA | NA | ||
| 1/AA/207:212 | NA | NA | ||
| 1/AA/259:267 | NA | NA | ||
| 1/AA/296:301 | NA | NA | ||
| 1/AA/320:333 | NA | NA | ||
| 1/AA/342:347 | NA | NA | ||
| 1/AA/379:384 | NA | NA | ||
| 1/AA/419:424 | NA | NA | ||
| 1/AA/462:470 | NA | NA | ||
| 1/AA/521:528 | NA | NA | ||
| 1/AA/617:623 | NA | NA | ||
| 1/AA/689:698 | NA | NA | ||
| 1/AA/726:731 | NA | NA | ||
| 1/AA/786:796 | NA | NA | ||
| 1/AA/840:846 | NA | NA | ||
| 1/AA/862:867 | NA | NA | ||
| 1/AA/897:902 | NA | NA | ||
| 1/AA/963:972 | NA | NA | ||
| 1/AA/1012:1017 | NA | NA | ||
| 1/AA/1028:1033 | NA | NA | ||
| 1/AA/1076:1081 | NA | NA | ||
| 1/AA/1089:1096 | NA | NA | ||
| 1/AA/1134:1140 | NA | NA | ||
| 1/AA/1165:1171 | NA | NA | ||
| 1/AA/1265:1270 | NA | NA | ||
| 1/AA/1314:1323 | NA | NA | ||
| 1/AA/1354:1368 | NA | NA | ||
| 1/AA/1449:1454 | NA | NA | ||
| 1/AA/1515:1520 | NA | NA | ||
| 1/AB/13:22 | NA | NA | ||
| 1/AB/31:39 | NA | NA | ||
| 1/AB/52:62 | NA | NA | ||
| 1/AD/13:23 | NA | NA | ||
| 1/AD/32:40 | NA | NA | ||
| 1/AD/54:62 | NA | NA | ||
| 1/BA/38:44 | NA | NA | ||
| 1/BA/85:91 | NA | NA | ||
| 1/BB/59:68 | homologous HL_7RQB_001 | NA HL_29414.1* | ||
| 1/BB/87:95 | NA | NA | ||
| 1/BB/123:128 | homologous HL_7RQB_003 | NA HL_62869.3* | ||
| 1/BB/137:142 | NA | NA | ||
| 1/BB/158:168 | geometric HL_5J7L_138 | NA HL_81820.1* | ||
| 1/BB/194:201 | homologous HL_7RQB_006 | NA HL_23481.5* | ||
| 1/BB/225:230 | Other HL geometric HL_1P6V_001 | NA HL_79299.11* | ||
| 1/BB/246:252 | homologous HL_7RQB_008 | NA HL_67216.5* | ||
| 1/BB/305:312 | homologous HL_7RQB_010 | NA HL_68493.6* | ||
| 1/BB/319:323 | homologous HL_7RQB_011 | NA HL_98557.5* | ||
| 1/BB/327:335 | homologous HL_7RQB_012 | NA HL_08002.6* | ||
| 1/BB/381:393 | NA | NA | ||
| 1/BB/410:417 | homologous HL_7RQB_014 | NA HL_32512.8* | ||
| 1/BB/462:467 | homologous HL_7RQB_015 | NA HL_43074.18* | ||
| 1/BB/487:493 | homologous HL_7RQB_016 | NA HL_43074.18* | ||
| 1/BB/543:550 | NA | NA | ||
| 1/BB/566:575 | homologous HL_7RQB_018 | NA HL_33239.17* | ||
| 1/BB/611:617 | geometric HL_5J7L_151 | NA HL_25660.1* | ||
| 1/BB/629:634 | homologous HL_7RQB_020 | NA HL_43074.18* | ||
| 1/BB/641:647 | NA | NA | ||
| 1/BB/712:719 | NA | NA | ||
| 1/BB/744:753 | homologous HL_7RQB_023 | NA HL_39334.5* | ||
| 1/BB/779:785 | Other HL geometric HL_1P6V_001 | NA HL_79299.11* | ||
| 1/BB/826:831 | NA | NA | ||
| 1/BB/885:891 | geometric HL_5TBW_022 | NA HL_15942.5* | ||
| 1/BB/954:963 | geometric HL_3RG5_006 | NA HL_83315.1* | ||
| 1/BB/978:985 | geometric HL_5TBW_006 | NA HL_98557.5* | ||
| 1/BB/1064:1074 | geometric HL_6PRV_001 | NA HL_92304.3* | ||
| 1/BB/1092:1099 | geometric HL_5TBW_012 | NA HL_94386.1* | ||
| 1/BB/1172:1177 | NA | NA | ||
| 1/BB/1222:1227 | homologous HL_7RQB_032 | NA HL_43074.18* | ||
| 1/BB/1281:1289 | homologous HL_7RQB_033 | NA HL_33239.17* | ||
| 1/BB/1324:1330 | geometric HL_5T16_002 | NA HL_68529.2* | ||
| 1/BB/1363:1368 | homologous HL_7RQB_035 | NA HL_43074.18* | ||
| 1/BB/1389:1398 | NA | NA | ||
| 1/BB/1450:1461 | geometric HL_5NFV_001 | NA HL_58912.1* | ||
| 1/BB/1492:1498 | homologous HL_7RQB_038 | NA HL_86880.5* | ||
| 1/BB/1533:1538 | UNCG geometric HL_5D5L_003 | NA HL_79299.11* | ||
| 1/BB/1565:1568 | NA | NA | ||
| 1/BB/1612:1619 | NA | NA | ||
| 1/BB/1630:1636 | GNRA with one bulged base geometric HL_5J7L_174 | NA HL_02361.6* | ||
| 1/BB/1691:1696 | UNCG geometric HL_1I6U_001 | NA HL_79299.11* | ||
| 1/BB/1728:1731 | NA | NA | ||
| 1/BB/1752:1756 | homologous HL_7RQB_044 | NA HL_79272.3* | ||
| 1/BB/1777:1787 | homologous HL_7RQB_045 | NA HL_43613.4* | ||
| 1/BB/1806:1811 | homologous HL_7RQB_046 | NA HL_43074.18* | ||
| 1/BB/1868:1873 | Other HL geometric HL_5TBW_048 | NA HL_43074.18* | ||
| 1/BB/1910:1920 | geometric HL_4V9F_005 | NA HL_79299.11* | ||
| 1/BB/1949:1957 | homologous HL_7RQB_049 | NA HL_53760.4* | ||
| 1/BB/2027:2036 | NA | NA | ||
| 1/BB/2142:2149 | NA | NA | ||
| 1/BB/2208:2216 | NA | NA | ||
| 1/BB/2264:2276 | homologous HL_7RQB_054 | NA HL_19870.5* | ||
| 1/BB/2302:2314 | NA | NA | ||
| 1/BB/2324:2331 | homologous HL_7RQB_056 | NA HL_46142.8* | ||
| 1/BB/2356:2361 | geometric HL_4V9F_003 | NA HL_94352.4* | ||
| 1/BB/2374:2379 | homologous HL_7RQB_058 | NA HL_43074.18* | ||
| 1/BB/2404:2413 | homologous HL_7RQB_059 | NA HL_48376.4* | ||
| 1/BB/2471:2479 | Other HL geometric HL_1P6V_001 | NA HL_79299.11* | ||
| 1/BB/2528:2535 | NA | NA | ||
| 1/BB/2551:2557 | geometric HL_2Y8W_001 | NA HL_69459.1* | ||
| 1/BB/2594:2599 | homologous HL_7RQB_063 | NA HL_43074.18* | ||
| 1/BB/2658:2663 | homologous HL_7RQB_064 | NA HL_43074.18* | ||
| 1/BB/2700:2707 | geometric HL_3R4F_002 | NA HL_46891.3* | ||
| 1/BB/2745:2759 | homologous HL_7RQB_066 | NA HL_56677.5* | ||
| 1/BB/2796:2800 | NA | NA | ||
| 1/BB/2819:2827 | homologous HL_7RQB_068 | NA HL_05018.6* | ||
| 1/BB/2856:2861 | homologous HL_7RQB_069 | NA HL_43074.18* |
Problematic loops
No problematic loops
Valid loops
| # | loop id | location | annotation (mapped to, source) | motif group (similar to) |
|---|---|---|---|---|
| 1/AA/30:33, 1/AA/551:553 | NA | NA | ||
| 1/AA/43:45, 1/AA/396:399 | NA | NA | ||
| 1/AA/47:52, 1/AA/359:361 | NA | NA | ||
| 1/AA/54:56, 1/AA/356:357 | NA | NA | ||
| 1/AA/63:66, 1/AA/103:104 | NA | NA | ||
| 1/AA/67:69, 1/AA/99:102 | NA | NA | ||
| 1/AA/70:73, 1/AA/97:98 | NA | NA | ||
| 1/AA/75:78, 1/AA/91:95 | NA | NA | ||
| 1/AA/125:131, 1/AA/231:236 | NA | NA | ||
| 1/AA/132:136, 1/AA/227:230 | NA | NA | ||
| 1/AA/136:139, 1/AA/224:227 | NA | NA | ||
| 1/AA/144:146, 1/AA/176:178 | NA | NA | ||
| 1/AA/146:153, 1/AA/168:176 | NA | NA | ||
| 1/AA/203:206, 1/AA/213:214 | NA | NA | ||
| 1/AA/242:247, 1/AA/277:284 | NA | NA | ||
| 1/AA/249:253, 1/AA/273:275 | NA | NA | ||
| 1/AA/292:293, 1/AA/304:308 | NA | NA | ||
| 1/AA/371:375, 1/AA/389:390 | NA | NA | ||
| 1/AA/375:377, 1/AA/386:389 | NA | NA | ||
| 1/AA/409:416, 1/AA/427:433 | NA | NA | ||
| 1/AA/440:442, 1/AA/492:497 | NA | NA | ||
| 1/AA/446:450, 1/AA/483:488 | NA | NA | ||
| 1/AA/450:455, 1/AA/477:483 | NA | NA | ||
| 1/AA/456:460, 1/AA/471:476 | NA | NA | ||
| 1/AA/460:462, 1/AA/470:471 | NA | NA | ||
| 1/AA/504:511, 1/AA/540:541 | NA | NA | ||
| 1/AA/515:521, 1/AA/528:536 | NA | NA | ||
| 1/AA/569:575, 1/AA/880:881 | NA | NA | ||
| 1/AA/580:584, 1/AA/757:761 | NA | NA | ||
| 1/AA/594:596, 1/AA/644:645 | NA | NA | ||
| 1/AA/597:598, 1/AA/640:643 | NA | NA | ||
| 1/AA/605:613, 1/AA/627:633 | NA | NA | ||
| 1/AA/654:655, 1/AA/751:754 | NA | NA | ||
| 1/AA/658:660, 1/AA/745:748 | NA | NA | ||
| 1/AA/662:666, 1/AA/740:743 | NA | NA | ||
| 1/AA/673:678, 1/AA/712:717 | NA | NA | ||
| 1/AA/684:688, 1/AA/699:706 | NA | NA | ||
| 1/AA/774:783, 1/AA/799:805 | NA | NA | ||
| 1/AA/833:835, 1/AA/851:853 | NA | NA | ||
| 1/AA/887:895, 1/AA/904:910 | NA | NA | ||
| 1/AA/922:923, 1/AA/1393:1395 | NA | NA | ||
| 1/AA/925:927, 1/AA/1390:1391 | NA | NA | ||
| 1/AA/933:935, 1/AA/1380:1384 | NA | NA | ||
| 1/AA/953:954, 1/AA/1226:1228 | NA | NA | ||
| 1/AA/993:997, 1/AA/1044:1045 | NA | NA | ||
| 1/AA/998:999, 1/AA/1041:1043 | NA | NA | ||
| 1/AA/1048:1052, 1/AA/1206:1209 | NA | NA | ||
| 1/AA/1052:1056, 1/AA/1204:1206 | NA | NA | ||
| 1/AA/1057:1058, 1/AA/1199:1203 | NA | NA | ||
| 1/AA/1060:1061, 1/AA/1195:1197 | NA | NA | ||
| 1/AA/1061:1063, 1/AA/1193:1195 | NA | NA | ||
| 1/AA/1124:1128, 1/AA/1144:1149 | NA | NA | ||
| 1/AA/1129:1132, 1/AA/1142:1143 | NA | NA | ||
| 1/AA/1158:1162, 1/AA/1174:1181 | NA | NA | ||
| 1/AA/1247:1254, 1/AA/1283:1290 | NA | NA | ||
| 1/AA/1255:1258, 1/AA/1277:1282 | NA | NA | ||
| 1/AA/1259:1263, 1/AA/1272:1276 | NA | NA | ||
| 1/AA/1303:1308, 1/AA/1329:1334 | NA | NA | ||
| 1/AA/1399:1401, 1/AA/1501:1504 | NA | NA | ||
| 1/AA/1401:1404, 1/AA/1497:1501 | NA | NA | ||
| 1/AA/1405:1409, 1/AA/1491:1496 | NA | NA | ||
| 1/AA/1412:1415, 1/AA/1485:1488 | NA | NA | ||
| 1/AA/1416:1420, 1/AA/1480:1484 | NA | NA | ||
| 1/AA/1430:1435, 1/AA/1466:1470 | NA | NA | ||
| 1/AA/1439:1443, 1/AA/1459:1462 | NA | NA | ||
| 1/AA/1445:1448, 1/AA/1455:1457 | NA | NA | ||
| 1/BA/17:18, 1/BA/65:67 | NA | NA | ||
| 1/BA/23:28, 1/BA/56:60 | NA | NA | ||
| 1/BA/30:31, 1/BA/51:54 | NA | NA | ||
| 1/BA/34:38, 1/BA/44:48 | NA | NA | ||
| 1/BA/71:79, 1/BA/97:105 | NA | NA | ||
| 1/BB/24:30, 1/BB/510:516 | NA | NA | ||
| 1/BB/36:37, 1/BB/442:444 | Single bulged A homologous IL_7RQB_002 | NA IL_80007.16* | ||
| 1/BB/43:44, 1/BB/434:436 | Minor groove platform homologous IL_7RQB_003 | NA IL_06437.11* | ||
| 1/BB/80:85, 1/BB/97:106 | NA | NA | ||
| 1/BB/183:184, 1/BB/212:214 | NA | NA | ||
| 1/BB/188:194, 1/BB/201:208 | 8x7 Sarcin-Ricin; G-bulge geometric IL_5J7L_250 | NA IL_04346.5* | ||
| 1/BB/239:245, 1/BB/253:258 | 7x6 Sarcin-Ricin; G-bulge homologous IL_7RQB_007 | NA IL_35110.5* | ||
| 1/BB/269:271, 1/BB/366:370 | NA | NA | ||
| 1/BB/274:281, 1/BB/359:363 | NA | NA | ||
| 1/BB/292:295, 1/BB/343:348 | NA | NA | ||
| 1/BB/481:484, 1/BB/496:509 | geometric IL_5J7L_255 | NA IL_60992.5* | ||
| 1/BB/536:539, 1/BB/554:557 | Double sheared geometric IL_4LFB_060 | NA IL_09705.7* | ||
| 1/BB/564:566, 1/BB/575:577 | geometric IL_5J7L_257 | NA IL_01312.13* | ||
| 1/BB/606:610, 1/BB/618:622 | AAA cross-strand stack homologous IL_7RQB_016 | NA IL_56467.6* | ||
| 1/BB/672:674, 1/BB/806:808 | homologous IL_7RQB_017 | NA IL_01312.13* | ||
| 1/BB/674:678, 1/BB/799:806 | tHW-tHW cross-strand stack geometric IL_5J7L_260 | NA IL_17470.5* | ||
| 1/BB/697:698, 1/BB/763:765 | Single bulged A geometric IL_4V9F_025 | NA IL_80007.16* | ||
| 1/BB/702:707, 1/BB/724:730 | Quadruple sheared geometric IL_3FTF_001 | NA IL_18894.1* | ||
| 1/BB/738:740, 1/BB/757:758 | Major groove platform geometric IL_5J7L_264 | NA IL_80663.10* | ||
| 1/BB/775:777, 1/BB/787:791 | Multiple bulged bases geometric IL_4WF9_027 | NA IL_90991.5* | ||
| 1/BB/843:845, 1/BB/934:935 | Single base bend geometric IL_5IBB_340 | NA IL_83121.7* | ||
| 1/BB/845:848, 1/BB/930:934 | NA | NA | ||
| 1/BB/849:851, 1/BB/926:929 | geometric IL_4P3T_002 | NA IL_87332.1* | ||
| 1/BB/856:862, 1/BB/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge geometric IL_5J7L_270 | NA IL_93830.2* | ||
| 1/BB/862:863, 1/BB/913:915 | Minor groove platform homologous IL_7RQB_028 | NA IL_06437.11* | ||
| 1/BB/864:868, 1/BB/909:912 | C-loop homologous IL_7RQB_029 | NA IL_63596.4* | ||
| 1/BB/870:872, 1/BB/905:907 | Isolated cWS basepair homologous IL_7RQB_030 | NA IL_67621.5* | ||
| 1/BB/875:879, 1/BB/898:902 | NA | NA | ||
| 1/BB/880:881, 1/BB/895:897 | NA | NA | ||
| 1/BB/881:883, 1/BB/894:895 | NA | NA | ||
| 1/BB/883:884, 1/BB/892:894 | Minor groove platform geometric IL_4V88_412 | NA IL_06437.11* | ||
| 1/BB/994:996, 1/BB/1159:1160 | Single bulged C homologous IL_7RQB_035 | NA IL_61258.10* | ||
| 1/BB/998:1002, 1/BB/1153:1157 | UAA/GAN homologous IL_7RQB_036 | NA IL_53523.5* | ||
| 1/BB/1004:1011, 1/BB/1150:1151 | SSU/LSU pseudoknot homologous IL_7RQB_037 | NA IL_15861.6* | ||
| 1/BB/1011:1013, 1/BB/1149:1150 | Single bulged U geometric IL_4WF9_038 | NA IL_83039.11* | ||
| 1/BB/1018:1024, 1/BB/1140:1144 | NA | NA | ||
| 1/BB/1024:1030, 1/BB/1124:1140 | NA | NA | ||
| 1/BB/1031:1034, 1/BB/1121:1123 | Isolated non-canonical cWW with bulges homologous IL_7RQB_041 | NA IL_55456.1* | ||
| 1/BB/1038:1042, 1/BB/1113:1117 | geometric IL_5TBW_121 | NA IL_05867.1* | ||
| 1/BB/1043:1051, 1/BB/1108:1112 | NA | NA | ||
| 1/BB/1059:1062, 1/BB/1076:1079 | NA | NA | ||
| 1/BB/1087:1090, 1/BB/1101:1102 | Major groove platform geometric IL_3OXE_003 | NA IL_80663.10* | ||
| 1/BB/1196:1199, 1/BB/1246:1250 | NA | NA | ||
| 1/BB/1202:1207, 1/BB/1239:1243 | NA | NA | ||
| 1/BB/1208:1215, 1/BB/1234:1238 | Kink-turn homologous IL_7RQB_047 | NA IL_29549.9* | ||
| 1/BB/1262:1269, 1/BB/2011:2017 | 8x7 Sarcin-Ricin; G-bulge homologous IL_7RQB_049 | NA IL_04346.5* | ||
| 1/BB/1310:1313, 1/BB/1603:1604 | Major groove platform; stack outside cWW homologous IL_7RQB_050 | NA IL_70995.6* | ||
| 1/BB/1319:1324, 1/BB/1330:1333 | NA | NA | ||
| 1/BB/1350:1355, 1/BB/1376:1381 | NA | NA | ||
| 1/BB/1357:1361, 1/BB/1370:1374 | tSH-tHW-tHS homologous IL_7RQB_053 | NA IL_39521.5* | ||
| 1/BB/1415:1416, 1/BB/1582:1587 | NA | NA | ||
| 1/BB/1417:1421, 1/BB/1577:1581 | UAA/GAN homologous IL_7RQB_055 | NA IL_53523.5* | ||
| 1/BB/1432:1435, 1/BB/1557:1561 | Non canonical cWW and near pair geometric IL_6CF2_001 | NA IL_85877.10* | ||
| 1/BB/1436:1440, 1/BB/1551:1556 | NA | NA | ||
| 1/BB/1468:1471, 1/BB/1520:1524 | geometric IL_5J7L_299 | NA IL_68574.2* | ||
| 1/BB/1473:1478, 1/BB/1513:1518 | 5x5 Sarcin-Ricin with intercalated A; G-bulge geometric IL_7A0S_027 | NA IL_89193.1* | ||
| 1/BB/1480:1482, 1/BB/1507:1511 | NA | NA | ||
| 1/BB/1489:1491, 1/BB/1499:1500 | Minor groove platform geometric IL_5J7L_064 | NA IL_06437.11* | ||
| 1/BB/1526:1529, 1/BB/1542:1546 | UAA/GAN variation geometric IL_5J7L_303 | NA IL_81389.2* | ||
| 1/BB/1651:1656, 1/BB/2004:2006 | homologous IL_7RQB_064 | NA IL_12566.2* | ||
| 1/BB/1663:1665, 1/BB/1995:1997 | Isolated tWW turn homologous IL_7RQB_065 | NA IL_54997.5* | ||
| 1/BB/1666:1669, 1/BB/1993:1994 | Major groove platform; stack outside cWW homologous IL_7RQB_066 | NA IL_80663.10* | ||
| 1/BB/1669:1674, 1/BB/1990:1993 | Intercalated tWH geometric IL_7RQB_067 | NA IL_01312.13* | ||
| 1/BB/1686:1691, 1/BB/1696:1702 | tSH-tSH-tHH-tHS homologous IL_7RQB_068 | NA IL_66584.5* | ||
| 1/BB/1712:1718, 1/BB/1742:1746 | 6x5 Sarcin-Ricin; G-bulge geometric IL_5J7L_309 | NA IL_88269.2* | ||
| 1/BB/1720:1726, 1/BB/1734:1740 | NA | NA | ||
| 1/BB/1727:1728, 1/BB/1731:1733 | Single bulged C geometric IL_5J7L_311 | NA IL_61258.10* | ||
| 1/BB/1770:1771, 1/BB/1980:1982 | Single bulged A homologous IL_7RQB_069 | NA IL_80007.16* | ||
| 1/BB/1798:1804, 1/BB/1813:1821 | Kink-turn related homologous IL_7RQB_070 | NA IL_17069.3* | ||
| 1/BB/1837:1840, 1/BB/1902:1903 | NA | NA | ||
| 1/BB/1840:1842, 1/BB/1898:1902 | NA | NA | ||
| 1/BB/1864:1867, 1/BB/1874:1878 | UAA/GAN related geometric IL_5J7L_317 | NA IL_81389.2* | ||
| 1/BB/1933:1934, 1/BB/1964:1967 | Major groove outside cWW, minor groove, intercalation pocket geometric IL_1U9S_003 | NA IL_13730.12* | ||
| 1/BB/1934:1945, 1/BB/1961:1964 | homologous IL_7RQB_077 | NA | ||
| 1/BB/2050:2052, 1/BB/2617:2618 | Major groove platform homologous IL_7RQB_078 | NA IL_80663.10* | ||
| 1/BB/2064:2066, 1/BB/2444:2446 | geometric IL_3LA5_001 | NA IL_01312.13* | ||
| 1/BB/2067:2071, 1/BB/2438:2443 | NA | NA | ||
| 1/BB/2081:2083, 1/BB/2236:2239 | Isolated tHS basepair with bulges homologous IL_7RQB_082 | NA IL_38958.6* | ||
| 1/BB/2084:2088, 1/BB/2231:2235 | NA | NA | ||
| 1/BB/2103:2105, 1/BB/2184:2186 | Not an internal loop geometric IL_5VCI_005 | NA IL_04038.4* | ||
| 1/BB/2106:2110, 1/BB/2179:2183 | NA | NA | ||
| 1/BB/2110:2120, 1/BB/2177:2179 | NA | NA | ||
| 1/BB/2120:2123, 1/BB/2175:2177 | geometric IL_4N0T_004 | NA IL_87332.1* | ||
| 1/BB/2124:2128, 1/BB/2160:2174 | NA | NA | ||
| 1/BB/2128:2136, 1/BB/2155:2160 | NA | NA | ||
| 1/BB/2202:2204, 1/BB/2220:2221 | Single bulged U geometric IL_3WBM_001 | NA IL_83039.11* | ||
| 1/BB/2350:2353, 1/BB/2364:2367 | Double sheared homologous IL_7RQB_089 | NA IL_09705.7* | ||
| 1/BB/2401:2403, 1/BB/2414:2415 | Single bulged U geometric IL_2A64_002 | NA IL_83039.11* | ||
| 1/BB/2455:2459, 1/BB/2493:2496 | NA | NA | ||
| 1/BB/2459:2461, 1/BB/2489:2493 | NA | NA | ||
| 1/BB/2466:2470, 1/BB/2480:2484 | Triple sheared homologous IL_7RQB_095 | NA IL_56467.6* | ||
| 1/BB/2507:2509, 1/BB/2579:2582 | NA | NA | ||
| 1/BB/2510:2512, 1/BB/2574:2578 | geometric IL_4KZD_003 | NA IL_01312.13* | ||
| 1/BB/2512:2513, 1/BB/2571:2574 | Multiple bulged bases homologous IL_7RQB_098 | NA IL_13730.12* | ||
| 1/BB/2521:2523, 1/BB/2540:2544 | NA | NA | ||
| 1/BB/2588:2590, 1/BB/2604:2606 | homologous IL_7RQB_100 | NA | ||
| 1/BB/2591:2592, 1/BB/2601:2603 | Single bulged A homologous IL_7RQB_101 | NA IL_80007.16* | ||
| 1/BB/2636:2640, 1/BB/2774:2782 | tSH-tHS-tHW homologous IL_7RQB_102 | NA IL_34907.2* | ||
| 1/BB/2652:2658, 1/BB/2663:2668 | NA | NA | ||
| 1/BB/2680:2684, 1/BB/2725:2727 | C-loop homologous IL_7RQB_104 | NA IL_63596.4* | ||
| 1/BB/2687:2691, 1/BB/2718:2722 | homologous IL_7RQB_105 | NA IL_08296.3* | ||
| 1/BB/2695:2696, 1/BB/2711:2714 | Multiple bulged bases homologous IL_7RQB_106 | NA IL_77034.1* | ||
| 1/BB/2737:2742, 1/BB/2762:2767 | UAA/GAN with extra cWW geometric IL_5J7L_350 | NA IL_49767.4* | ||
| 1/BB/2806:2811, 1/BB/2889:2892 | NA | NA | ||
| 1/BB/2838:2839, 1/BB/2878:2880 | Single bulged C homologous IL_7RQB_108 | NA IL_61258.10* | ||
| 1/BB/2843:2846, 1/BB/2870:2874 | homologous IL_7RQB_109 | NA IL_58764.1* | ||
| 1/BB/2847:2852, 1/BB/2865:2869 | homologous IL_7RQB_110 | NA IL_83162.3* |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4V6O_176 | geometric IL_1NBS_006 |
Valid loops
| # | loop id | location | annotation (mapped to, source) | motif group (similar to) |
|---|---|---|---|---|
| 1/AA/45:47, 1/AA/361:369, 1/AA/392:396 | NA | NA | ||
| 1/AA/586:588, 1/AA/651:654, 1/AA/754:755 | NA | NA | ||
| 1/AA/672:673, 1/AA/717:725, 1/AA/732:734 | NA | NA | ||
| 1/AA/826:829, 1/AA/857:861, 1/AA/868:874 | NA | NA | ||
| 1/AA/941:946, 1/AA/1235:1237, 1/AA/1337:1342 | NA | NA | ||
| 1/AA/954:962, 1/AA/973:984, 1/AA/1221:1226 | NA | NA | ||
| 1/AA/990:993, 1/AA/1045:1047, 1/AA/1210:1215 | NA | NA | ||
| 1/AA/1003:1006, 1/AA/1023:1027, 1/AA/1034:1037 | NA | NA | ||
| 1/AA/1063:1068, 1/AA/1107:1114, 1/AA/1186:1193 | NA | NA | ||
| 1/AA/1073:1074, 1/AA/1083:1087, 1/AA/1098:1102 | NA | NA | ||
| 1/AA/1116:1119, 1/AA/1154:1158, 1/AA/1181:1184 | NA | NA | ||
| 1/AA/1237:1241, 1/AA/1296:1303, 1/AA/1334:1337 | NA | NA | ||
| 1/BA/10:16, 1/BA/68:70, 1/BA/106:110 | NA | NA | ||
| 1/BB/30:31, 1/BB/474:481, 1/BB/509:510 | homologous J3_7RQB_001 | NA | ||
| 1/BB/55:57, 1/BB/70:76, 1/BB/110:115 | NA | NA | ||
| 1/BB/683:689, 1/BB/773:775, 1/BB/791:794 | homologous J3_7RQB_004 | NA | ||
| 1/BB/698:700, 1/BB/732:736, 1/BB/760:763 | homologous J3_7RQB_005 | NA | ||
| 1/BB/1053:1059, 1/BB/1079:1087, 1/BB/1102:1106 | NA | NA | ||
| 1/BB/1298:1303, 1/BB/1625:1627, 1/BB/1639:1642 | homologous J3_7RQB_007 | NA | ||
| 1/BB/1306:1309, 1/BB/1605:1611, 1/BB/1620:1622 | homologous J3_7RQB_008 | NA | ||
| 1/BB/1344:1350, 1/BB/1381:1385, 1/BB/1402:1403 | NA | NA | ||
| 1/BB/2091:2093, 1/BB/2196:2200, 1/BB/2223:2228 | homologous J3_7RQB_010 | NA | ||
| 1/BB/2295:2299, 1/BB/2317:2323, 1/BB/2332:2337 | NA | NA | ||
| 1/BB/2517:2520, 1/BB/2545:2547, 1/BB/2561:2567 | NA | NA | ||
| 1/BB/2789:2791, 1/BB/2805:2806, 1/BB/2892:2894 | NA | NA | ||
| 1/BB/2812:2815, 1/BB/2831:2836, 1/BB/2882:2888 | NA | NA |
Problematic loops
No problematic loops
Coloring options: