4V6O Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4V6O_001 | 1/AA/12:22 | No text annotation Not in a motif group | homologous HL_5J7L_001 HL_89881.2 | |
| HL_4V6O_002 | 1/AA/81:88 | No text annotation Not in a motif group | homologous HL_6CZR_073 NA | |
| HL_4V6O_003 | 1/AA/158:163 | GNRA Not in a motif group | homologous HL_5J7L_003 HL_42097.1 | |
| HL_4V6O_004 | 1/AA/186:191 | GNRA Not in a motif group | homologous HL_5J7L_004 HL_42097.1 | |
| HL_4V6O_005 | 1/AA/207:212 | UNCG Not in a motif group | homologous HL_5J7L_005 HL_03562.2 | |
| HL_4V6O_006 | 1/AA/259:267 | No text annotation Not in a motif group | homologous HL_4LFB_006 HL_69023.2 | |
| HL_4V6O_007 | 1/AA/296:301 | GNRA Not in a motif group | homologous HL_5J7L_007 HL_42097.1 | |
| HL_4V6O_008 | 1/AA/320:333 | No text annotation Not in a motif group | homologous HL_4LFB_008 HL_81205.2 | |
| HL_4V6O_009 | 1/AA/342:347 | UNCG Not in a motif group | homologous HL_4LFB_009 HL_03562.2 | |
| HL_4V6O_010 | 1/AA/379:384 | GNRA Not in a motif group | homologous HL_5J7L_010 HL_42097.1 | |
| HL_4V6O_011 | 1/AA/419:424 | UNCG Not in a motif group | homologous HL_5J7L_011 HL_03562.2 | |
| HL_4V6O_012 | 1/AA/462:470 | No text annotation Not in a motif group | ||
| HL_4V6O_013 | 1/AA/521:528 | No text annotation Not in a motif group | geometric HL_5NFV_001 HL_76539.2 | |
| HL_4V6O_014 | 1/AA/617:623 | No text annotation Not in a motif group | homologous HL_6CZR_085 HL_26881.1 | |
| HL_4V6O_015 | 1/AA/689:698 | No text annotation Not in a motif group | homologous HL_6CZR_086 HL_12326.1 | |
| HL_4V6O_016 | 1/AA/726:731 | Other HL Not in a motif group | homologous HL_4LFB_016 HL_87030.2 | |
| HL_4V6O_017 | 1/AA/786:796 | No text annotation Not in a motif group | homologous HL_4LFB_017 HL_12326.1 | |
| HL_4V6O_018 | 1/AA/840:846 | No text annotation Not in a motif group | ||
| HL_4V6O_019 | 1/AA/862:867 | GNRA Not in a motif group | homologous HL_4LFB_019 HL_42097.1 | |
| HL_4V6O_020 | 1/AA/897:902 | GNRA Not in a motif group | homologous HL_5J7L_020 HL_42097.1 | |
| HL_4V6O_021 | 1/AA/963:972 | No text annotation Not in a motif group | homologous HL_4LFB_021 NA | |
| HL_4V6O_022 | 1/AA/1012:1017 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_42097.1 | |
| HL_4V6O_023 | 1/AA/1028:1033 | UNCG Not in a motif group | geometric HL_1I6U_001 HL_03562.2 | |
| HL_4V6O_024 | 1/AA/1076:1081 | GNRA Not in a motif group | homologous HL_5J7L_023 HL_42097.1 | |
| HL_4V6O_025 | 1/AA/1089:1096 | No text annotation Not in a motif group | homologous HL_4LFB_025 HL_71554.2 | |
| HL_4V6O_026 | 1/AA/1134:1140 | No text annotation Not in a motif group | homologous HL_4LFB_026 HL_03562.2 | |
| HL_4V6O_027 | 1/AA/1165:1171 | No text annotation Not in a motif group | homologous HL_5J7L_026 HL_90617.2 | |
| HL_4V6O_028 | 1/AA/1265:1270 | Other HL Not in a motif group | geometric HL_1P6V_001 HL_03562.2 | |
| HL_4V6O_029 | 1/AA/1314:1323 | No text annotation Not in a motif group | homologous HL_5J7L_028 HL_89380.2 | |
| HL_4V6O_030 | 1/AA/1354:1368 | No text annotation Not in a motif group | ||
| HL_4V6O_031 | 1/AA/1449:1454 | UNCG Not in a motif group | homologous HL_5J7L_030 HL_03562.2 | |
| HL_4V6O_032 | 1/AA/1515:1520 | No text annotation Not in a motif group | homologous HL_4LFB_032 NA | |
| HL_4V6O_033 | 1/AB/13:22 | No text annotation Not in a motif group | homologous HL_2AKE_001 NA | |
| HL_4V6O_034 | 1/AB/31:39 | tRNA anticodon loop Not in a motif group | homologous HL_4TUE_034 HL_53597.2 | |
| HL_4V6O_035 | 1/AB/52:62 | No text annotation Not in a motif group | ||
| HL_4V6O_036 | 1/AD/13:23 | No text annotation Not in a motif group | homologous HL_4YYE_001 NA | |
| HL_4V6O_037 | 1/AD/32:40 | No text annotation Not in a motif group | homologous HL_6UGG_005 NA | |
| HL_4V6O_038 | 1/AD/54:62 | No text annotation Not in a motif group | homologous HL_1SER_002 NA | |
| HL_4V6O_039 | 1/BA/38:44 | No text annotation Not in a motif group | homologous HL_4V9F_071 HL_87939.1 | |
| HL_4V6O_040 | 1/BA/85:91 | No text annotation Not in a motif group | ||
| HL_4V6O_041 | 1/BB/59:68 | No text annotation Not in a motif group | homologous HL_7RQB_001 HL_99167.1 | |
| HL_4V6O_042 | 1/BB/87:95 | No text annotation Not in a motif group | homologous HL_5J7L_135 HL_84193.1 | |
| HL_4V6O_043 | 1/BB/123:128 | No text annotation Not in a motif group | homologous HL_4WF9_003 HL_75407.1 | |
| HL_4V6O_044 | 1/BB/137:142 | No text annotation Not in a motif group | ||
| HL_4V6O_045 | 1/BB/158:168 | No text annotation Not in a motif group | homologous HL_5J7L_138 HL_81820.1 | |
| HL_4V6O_046 | 1/BB/194:201 | No text annotation Not in a motif group | homologous HL_7RQB_006 HL_06192.2 | |
| HL_4V6O_047 | 1/BB/225:230 | No text annotation Not in a motif group | homologous HL_5J7L_140 HL_27930.1 | |
| HL_4V6O_048 | 1/BB/246:252 | No text annotation Not in a motif group | homologous HL_4WF9_008 HL_67216.7 | |
| HL_4V6O_049 | 1/BB/305:312 | T-loop with 1 bulged base Not in a motif group | homologous HL_5J7L_142 HL_89380.2 | |
| HL_4V6O_050 | 1/BB/319:323 | No text annotation Not in a motif group | homologous HL_5J7L_143 HL_75407.1 | |
| HL_4V6O_051 | 1/BB/327:335 | No text annotation Not in a motif group | homologous HL_5J7L_144 HL_08002.8 | |
| HL_4V6O_052 | 1/BB/381:393 | No text annotation Not in a motif group | ||
| HL_4V6O_053 | 1/BB/410:417 | No text annotation Not in a motif group | homologous HL_7RQB_014 HL_96598.1 | |
| HL_4V6O_054 | 1/BB/462:467 | No text annotation Not in a motif group | homologous HL_7RQB_015 HL_42097.1 | |
| HL_4V6O_055 | 1/BB/487:493 | GNRA Not in a motif group | homologous HL_4WF9_016 HL_42097.1 | |
| HL_4V6O_056 | 1/BB/543:550 | No text annotation Not in a motif group | ||
| HL_4V6O_057 | 1/BB/566:575 | No text annotation Not in a motif group | homologous HL_7RQB_018 HL_89380.2 | |
| HL_4V6O_058 | 1/BB/611:617 | No text annotation Not in a motif group | homologous HL_5J7L_151 HL_90617.2 | |
| HL_4V6O_059 | 1/BB/629:634 | GNRA Not in a motif group | homologous HL_5J7L_152 HL_42097.1 | |
| HL_4V6O_060 | 1/BB/641:647 | No text annotation Not in a motif group | ||
| HL_4V6O_061 | 1/BB/712:719 | No text annotation Not in a motif group | ||
| HL_4V6O_062 | 1/BB/744:753 | No text annotation Not in a motif group | homologous HL_5J7L_155 NA | |
| HL_4V6O_063 | 1/BB/779:785 | Other HL Not in a motif group | geometric HL_1P6V_001 HL_03562.2 | |
| HL_4V6O_064 | 1/BB/826:831 | No text annotation Not in a motif group | ||
| HL_4V6O_065 | 1/BB/885:891 | No text annotation Not in a motif group | geometric HL_5TBW_022 HL_94803.1 | |
| HL_4V6O_066 | 1/BB/954:963 | No text annotation Not in a motif group | homologous HL_5J7L_159 NA | |
| HL_4V6O_067 | 1/BB/978:985 | No text annotation Not in a motif group | geometric HL_5TBW_006 HL_98984.2 | |
| HL_4V6O_068 | 1/BB/1064:1074 | No text annotation Not in a motif group | homologous HL_6PRV_001 HL_07145.1 | |
| HL_4V6O_069 | 1/BB/1092:1099 | No text annotation Not in a motif group | geometric HL_5TBW_012 HL_86373.2 | |
| HL_4V6O_070 | 1/BB/1172:1177 | No text annotation Not in a motif group | ||
| HL_4V6O_071 | 1/BB/1222:1227 | Other HL Not in a motif group | homologous HL_5J7L_164 HL_87030.2 | |
| HL_4V6O_072 | 1/BB/1281:1289 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5J7L_165 HL_89380.2 | |
| HL_4V6O_073 | 1/BB/1324:1330 | No text annotation Not in a motif group | geometric HL_5T16_002 HL_65572.2 | |
| HL_4V6O_074 | 1/BB/1363:1368 | Other HL Not in a motif group | homologous HL_5J7L_167 HL_87030.2 | |
| HL_4V6O_075 | 1/BB/1389:1398 | No text annotation Not in a motif group | ||
| HL_4V6O_076 | 1/BB/1450:1461 | No text annotation Not in a motif group | geometric HL_5NFV_001 HL_76539.2 | |
| HL_4V6O_077 | 1/BB/1492:1498 | No text annotation Not in a motif group | homologous HL_7RQB_038 HL_46680.1 | |
| HL_4V6O_078 | 1/BB/1533:1538 | UNCG Not in a motif group | homologous HL_5J7L_171 HL_03562.2 | |
| HL_4V6O_079 | 1/BB/1565:1568 | No text annotation Not in a motif group | homologous HL_7RQB_039 HL_38927.2 | |
| HL_4V6O_080 | 1/BB/1612:1619 | No text annotation Not in a motif group | ||
| HL_4V6O_081 | 1/BB/1630:1636 | GNRA with one bulged base Not in a motif group | homologous HL_5J7L_174 HL_42097.1 | |
| HL_4V6O_082 | 1/BB/1691:1696 | UNCG Not in a motif group | geometric HL_1I6U_001 HL_03562.2 | |
| HL_4V6O_083 | 1/BB/1728:1731 | No text annotation Not in a motif group | ||
| HL_4V6O_084 | 1/BB/1752:1756 | No text annotation Not in a motif group | homologous HL_5J7L_177 HL_76539.2 | |
| HL_4V6O_085 | 1/BB/1777:1787 | No text annotation Not in a motif group | homologous HL_7RQB_045 HL_43613.5 | |
| HL_4V6O_086 | 1/BB/1806:1811 | No text annotation Not in a motif group | homologous HL_4WF9_044 NA | |
| HL_4V6O_087 | 1/BB/1868:1873 | Other HL Not in a motif group | geometric HL_5TBW_048 HL_42097.1 | |
| HL_4V6O_088 | 1/BB/1910:1920 | No text annotation Not in a motif group | homologous HL_5J7L_181 NA | |
| HL_4V6O_089 | 1/BB/1949:1957 | No text annotation Not in a motif group | homologous HL_7RQB_049 HL_51824.1 | |
| HL_4V6O_090 | 1/BB/2027:2036 | No text annotation Not in a motif group | ||
| HL_4V6O_091 | 1/BB/2142:2149 | No text annotation Not in a motif group | ||
| HL_4V6O_092 | 1/BB/2208:2216 | No text annotation Not in a motif group | ||
| HL_4V6O_093 | 1/BB/2264:2276 | No text annotation Not in a motif group | homologous HL_7RQB_054 HL_19870.6 | |
| HL_4V6O_094 | 1/BB/2302:2314 | No text annotation Not in a motif group | ||
| HL_4V6O_095 | 1/BB/2324:2331 | No text annotation Not in a motif group | homologous HL_7A0S_055 HL_12078.2 | |
| HL_4V6O_096 | 1/BB/2356:2361 | Other HL Not in a motif group | homologous HL_5J7L_190 HL_87030.2 | |
| HL_4V6O_097 | 1/BB/2374:2379 | GNRA Not in a motif group | homologous HL_4WF9_054 HL_42097.1 | |
| HL_4V6O_098 | 1/BB/2404:2413 | No text annotation Not in a motif group | homologous HL_7A0S_058 HL_30784.2 | |
| HL_4V6O_099 | 1/BB/2471:2479 | Other HL Not in a motif group | geometric HL_1P6V_001 HL_03562.2 | |
| HL_4V6O_100 | 1/BB/2528:2535 | No text annotation Not in a motif group | ||
| HL_4V6O_101 | 1/BB/2551:2557 | No text annotation Not in a motif group | geometric HL_2Y8W_001 HL_01057.1 | |
| HL_4V6O_102 | 1/BB/2594:2599 | No text annotation Not in a motif group | homologous HL_7RQB_063 HL_42097.1 | |
| HL_4V6O_103 | 1/BB/2658:2663 | GNRA Not in a motif group | homologous HL_5J7L_197 HL_42097.1 | |
| HL_4V6O_104 | 1/BB/2700:2707 | No text annotation Not in a motif group | geometric HL_3R4F_002 HL_35015.1 | |
| HL_4V6O_105 | 1/BB/2745:2759 | No text annotation Not in a motif group | homologous HL_5J7L_199 HL_56677.7 | |
| HL_4V6O_106 | 1/BB/2796:2800 | No text annotation Not in a motif group | ||
| HL_4V6O_107 | 1/BB/2819:2827 | No text annotation Not in a motif group | homologous HL_7A0S_067 HL_27930.1 | |
| HL_4V6O_108 | 1/BB/2856:2861 | Other HL Not in a motif group | homologous HL_5J7L_202 HL_42097.1 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4V6O_001 | 1/AA/30:33, 1/AA/551:553 | No text annotation Not in a motif group | geometric IL_6CZR_171 IL_95997.1 | |
| IL_4V6O_002 | 1/AA/43:45, 1/AA/396:399 | No text annotation Not in a motif group | geometric IL_4Y1M_005 IL_51629.2 | |
| IL_4V6O_003 | 1/AA/47:52, 1/AA/359:361 | No text annotation Not in a motif group | ||
| IL_4V6O_004 | 1/AA/54:56, 1/AA/356:357 | Minor groove platform Not in a motif group | homologous IL_4LFB_004 IL_93353.1 | |
| IL_4V6O_005 | 1/AA/63:66, 1/AA/103:104 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_005 IL_76389.1 | |
| IL_4V6O_006 | 1/AA/67:69, 1/AA/99:102 | Minor groove platform with extra cWW Not in a motif group | homologous IL_5J7L_006 IL_65006.1 | |
| IL_4V6O_007 | 1/AA/70:73, 1/AA/97:98 | Minor groove platform Not in a motif group | homologous IL_5J7L_007 IL_15052.1 | |
| IL_4V6O_008 | 1/AA/75:78, 1/AA/91:95 | No text annotation Not in a motif group | ||
| IL_4V6O_009 | 1/AA/125:131, 1/AA/231:236 | No text annotation Not in a motif group | ||
| IL_4V6O_010 | 1/AA/132:136, 1/AA/227:230 | No text annotation Not in a motif group | ||
| IL_4V6O_011 | 1/AA/136:139, 1/AA/224:227 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_402D_001 IL_30621.2 | |
| IL_4V6O_012 | 1/AA/144:146, 1/AA/176:178 | Isolated cWH basepair Not in a motif group | geometric IL_3W3S_003 IL_51629.2 | |
| IL_4V6O_013 | 1/AA/146:153, 1/AA/168:176 | No text annotation Not in a motif group | ||
| IL_4V6O_014 | 1/AA/203:206, 1/AA/213:214 | Multiple bulged bases Not in a motif group | geometric IL_4YAZ_008 IL_76389.1 | |
| IL_4V6O_015 | 1/AA/242:247, 1/AA/277:284 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_5J7L_014 IL_45067.2 | |
| IL_4V6O_016 | 1/AA/249:253, 1/AA/273:275 | No text annotation Not in a motif group | homologous IL_6CZR_124 IL_38684.1 | |
| IL_4V6O_017 | 1/AA/292:293, 1/AA/304:308 | No text annotation Not in a motif group | ||
| IL_4V6O_018 | 1/AA/371:375, 1/AA/389:390 | C-loop Not in a motif group | geometric IL_4LFB_015 IL_75255.1 | |
| IL_4V6O_019 | 1/AA/375:377, 1/AA/386:389 | No text annotation Not in a motif group | ||
| IL_4V6O_020 | 1/AA/409:416, 1/AA/427:433 | No text annotation Not in a motif group | ||
| IL_4V6O_021 | 1/AA/440:442, 1/AA/492:497 | Other IL Not in a motif group | geometric IL_4PDB_001 IL_22248.1 | |
| IL_4V6O_022 | 1/AA/446:450, 1/AA/483:488 | tSH-tHW-tWW Not in a motif group | homologous IL_5J7L_022 IL_88269.3 | |
| IL_4V6O_023 | 1/AA/450:455, 1/AA/477:483 | No text annotation Not in a motif group | ||
| IL_4V6O_024 | 1/AA/456:460, 1/AA/471:476 | No text annotation Not in a motif group | ||
| IL_4V6O_025 | 1/AA/460:462, 1/AA/470:471 | Single stack bend Not in a motif group | geometric IL_7KGA_006 IL_76488.2 | |
| IL_4V6O_026 | 1/AA/504:511, 1/AA/540:541 | SSU/LSU pseudoknot Not in a motif group | homologous IL_4LFB_020 IL_15861.7 | |
| IL_4V6O_027 | 1/AA/515:521, 1/AA/528:536 | No text annotation Not in a motif group | homologous IL_4LFB_021 NA | |
| IL_4V6O_028 | 1/AA/569:575, 1/AA/880:881 | No text annotation Not in a motif group | homologous IL_4LFB_022 IL_69996.1 | |
| IL_4V6O_029 | 1/AA/580:584, 1/AA/757:761 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_027 IL_17136.1 | |
| IL_4V6O_030 | 1/AA/594:596, 1/AA/644:645 | Major groove platform Not in a motif group | homologous IL_5J7L_028 IL_27635.1 | |
| IL_4V6O_031 | 1/AA/597:598, 1/AA/640:643 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_029 IL_09061.6 | |
| IL_4V6O_032 | 1/AA/605:613, 1/AA/627:633 | No text annotation Not in a motif group | ||
| IL_4V6O_033 | 1/AA/654:655, 1/AA/751:754 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_5J7L_031 IL_50694.2 | |
| IL_4V6O_034 | 1/AA/658:660, 1/AA/745:748 | No text annotation Not in a motif group | geometric IL_4V9F_053 IL_46796.1 | |
| IL_4V6O_035 | 1/AA/662:666, 1/AA/740:743 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_033 IL_71110.1 | |
| IL_4V6O_036 | 1/AA/673:678, 1/AA/712:717 | No text annotation Not in a motif group | homologous IL_6CZR_142 IL_04668.1 | |
| IL_4V6O_037 | 1/AA/684:688, 1/AA/699:706 | Kink-turn Not in a motif group | homologous IL_5J7L_035 IL_45067.2 | |
| IL_4V6O_038 | 1/AA/774:783, 1/AA/799:805 | No text annotation Not in a motif group | ||
| IL_4V6O_039 | 1/AA/833:835, 1/AA/851:853 | No text annotation Not in a motif group | geometric IL_2ZNI_001 IL_51629.2 | |
| IL_4V6O_040 | 1/AA/887:895, 1/AA/904:910 | 9x7 Sarcin-Ricin with inserted C; G-bulge Not in a motif group | homologous IL_6CZR_146 IL_68633.1 | |
| IL_4V6O_041 | 1/AA/922:923, 1/AA/1393:1395 | Single bulged A Not in a motif group | homologous IL_5J7L_039 IL_37497.2 | |
| IL_4V6O_042 | 1/AA/925:927, 1/AA/1390:1391 | Single bulged G Not in a motif group | homologous IL_5J7L_040 IL_00225.2 | |
| IL_4V6O_043 | 1/AA/933:935, 1/AA/1380:1384 | Minor groove platform Not in a motif group | homologous IL_5J7L_041 IL_47078.1 | |
| IL_4V6O_044 | 1/AA/953:954, 1/AA/1226:1228 | Minor groove platform Not in a motif group | homologous IL_5J7L_042 IL_42622.2 | |
| IL_4V6O_045 | 1/AA/993:997, 1/AA/1044:1045 | Minor groove platform Not in a motif group | homologous IL_6CZR_151 IL_47078.1 | |
| IL_4V6O_046 | 1/AA/998:999, 1/AA/1041:1043 | Single stack bend Not in a motif group | homologous IL_5J7L_044 IL_76488.2 | |
| IL_4V6O_047 | 1/AA/1048:1052, 1/AA/1206:1209 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_3WBM_003 IL_30621.2 | |
| IL_4V6O_048 | 1/AA/1052:1056, 1/AA/1204:1206 | Isolated cWS basepair Not in a motif group | homologous IL_4LFB_044 IL_76319.2 | |
| IL_4V6O_049 | 1/AA/1057:1058, 1/AA/1199:1203 | Minor groove platform Not in a motif group | homologous IL_5J7L_048 IL_93353.1 | |
| IL_4V6O_050 | 1/AA/1060:1061, 1/AA/1195:1197 | Single bulged A Not in a motif group | geometric IL_4V88_452 IL_37497.2 | |
| IL_4V6O_051 | 1/AA/1061:1063, 1/AA/1193:1195 | No text annotation Not in a motif group | homologous IL_6CZR_157 IL_95997.1 | |
| IL_4V6O_052 | 1/AA/1124:1128, 1/AA/1144:1149 | No text annotation Not in a motif group | homologous IL_5J7L_051 IL_93211.1 | |
| IL_4V6O_053 | 1/AA/1129:1132, 1/AA/1142:1143 | Minor groove platform Not in a motif group | homologous IL_5J7L_052 IL_15052.1 | |
| IL_4V6O_054 | 1/AA/1158:1162, 1/AA/1174:1181 | No text annotation Not in a motif group | ||
| IL_4V6O_055 | 1/AA/1247:1254, 1/AA/1283:1290 | No text annotation Not in a motif group | ||
| IL_4V6O_056 | 1/AA/1255:1258, 1/AA/1277:1282 | No text annotation Not in a motif group | ||
| IL_4V6O_057 | 1/AA/1259:1263, 1/AA/1272:1276 | Triple sheared Not in a motif group | homologous IL_5J7L_056 IL_56467.8 | |
| IL_4V6O_058 | 1/AA/1303:1308, 1/AA/1329:1334 | No text annotation Not in a motif group | homologous IL_4LFB_055 IL_19954.2 | |
| IL_4V6O_059 | 1/AA/1399:1401, 1/AA/1501:1504 | No text annotation Not in a motif group | geometric IL_5J7L_058 IL_36143.3 | |
| IL_4V6O_060 | 1/AA/1401:1404, 1/AA/1497:1501 | No text annotation Not in a motif group | homologous IL_5J7L_059 NA | |
| IL_4V6O_061 | 1/AA/1405:1409, 1/AA/1491:1496 | No text annotation Not in a motif group | homologous IL_5J7L_060 NA | |
| IL_4V6O_062 | 1/AA/1412:1415, 1/AA/1485:1488 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_6CZR_168 IL_67743.1 | |
| IL_4V6O_063 | 1/AA/1416:1420, 1/AA/1480:1484 | No text annotation Not in a motif group | ||
| IL_4V6O_064 | 1/AA/1430:1435, 1/AA/1466:1470 | Triple sheared related Not in a motif group | homologous IL_5J7L_063 IL_64879.2 | |
| IL_4V6O_065 | 1/AA/1439:1443, 1/AA/1459:1462 | No text annotation Not in a motif group | ||
| IL_4V6O_066 | 1/AA/1445:1448, 1/AA/1455:1457 | No text annotation Not in a motif group | homologous IL_5J7L_065 IL_02284.5 | |
| IL_4V6O_067 | 1/BA/17:18, 1/BA/65:67 | Major groove intercalation Not in a motif group | homologous IL_7RQB_111 IL_37497.2 | |
| IL_4V6O_068 | 1/BA/23:28, 1/BA/56:60 | No text annotation Not in a motif group | homologous IL_7A0S_103 IL_18472.2 | |
| IL_4V6O_069 | 1/BA/30:31, 1/BA/51:54 | No text annotation Not in a motif group | ||
| IL_4V6O_070 | 1/BA/34:38, 1/BA/44:48 | Symmetric double minor groove platform Not in a motif group | geometric IL_5TBW_376 IL_58103.6 | |
| IL_4V6O_071 | 1/BA/71:79, 1/BA/97:105 | Bacterial 5S Loop E Not in a motif group | homologous IL_7A0S_106 IL_56455.3 | |
| IL_4V6O_072 | 1/BB/24:30, 1/BB/510:516 | No text annotation Not in a motif group | ||
| IL_4V6O_073 | 1/BB/36:37, 1/BB/442:444 | Single bulged A Not in a motif group | homologous IL_5J7L_246 IL_37497.2 | |
| IL_4V6O_074 | 1/BB/43:44, 1/BB/434:436 | Minor groove platform Not in a motif group | homologous IL_7RQB_003 IL_42622.2 | |
| IL_4V6O_075 | 1/BB/80:85, 1/BB/97:106 | No text annotation Not in a motif group | ||
| IL_4V6O_076 | 1/BB/183:184, 1/BB/212:214 | No text annotation Not in a motif group | ||
| IL_4V6O_077 | 1/BB/188:194, 1/BB/201:208 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_5J7L_250 IL_04346.7 | |
| IL_4V6O_078 | 1/BB/239:245, 1/BB/253:258 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_251 IL_76042.2 | |
| IL_4V6O_079 | 1/BB/269:271, 1/BB/366:370 | No text annotation Not in a motif group | ||
| IL_4V6O_080 | 1/BB/274:281, 1/BB/359:363 | No text annotation Not in a motif group | homologous IL_5J7L_253 IL_77870.1 | |
| IL_4V6O_081 | 1/BB/292:295, 1/BB/343:348 | No text annotation Not in a motif group | ||
| IL_4V6O_082 | 1/BB/481:484, 1/BB/496:509 | No text annotation Not in a motif group | geometric IL_5J7L_255 IL_60992.6 | |
| IL_4V6O_083 | 1/BB/536:539, 1/BB/554:557 | Double sheared Not in a motif group | homologous IL_4WF9_016 IL_09705.9 | |
| IL_4V6O_084 | 1/BB/564:566, 1/BB/575:577 | No text annotation Not in a motif group | geometric IL_5J7L_257 IL_95997.1 | |
| IL_4V6O_085 | 1/BB/606:610, 1/BB/618:622 | AAA cross-strand stack Not in a motif group | homologous IL_5J7L_258 IL_17136.1 | |
| IL_4V6O_086 | 1/BB/672:674, 1/BB/806:808 | No text annotation Not in a motif group | homologous IL_7RQB_017 IL_95997.1 | |
| IL_4V6O_087 | 1/BB/674:678, 1/BB/799:806 | tHW-tHW cross-strand stack Not in a motif group | geometric IL_5J7L_260 IL_17470.6 | |
| IL_4V6O_088 | 1/BB/697:698, 1/BB/763:765 | Single bulged A Not in a motif group | geometric IL_4V9F_025 IL_37497.2 | |
| IL_4V6O_089 | 1/BB/702:707, 1/BB/724:730 | Quadruple sheared Not in a motif group | geometric IL_3FTF_001 IL_06136.1 | |
| IL_4V6O_090 | 1/BB/738:740, 1/BB/757:758 | Major groove platform Not in a motif group | homologous IL_5J7L_264 IL_27635.1 | |
| IL_4V6O_091 | 1/BB/775:777, 1/BB/787:791 | Multiple bulged bases Not in a motif group | geometric IL_4WF9_027 IL_90991.6 | |
| IL_4V6O_092 | 1/BB/843:845, 1/BB/934:935 | Single base bend Not in a motif group | geometric IL_5IBB_340 IL_92001.1 | |
| IL_4V6O_093 | 1/BB/845:848, 1/BB/930:934 | No text annotation Not in a motif group | ||
| IL_4V6O_094 | 1/BB/849:851, 1/BB/926:929 | No text annotation Not in a motif group | geometric IL_4P3T_002 IL_46796.1 | |
| IL_4V6O_095 | 1/BB/856:862, 1/BB/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_5J7L_270 IL_93830.3 | |
| IL_4V6O_096 | 1/BB/862:863, 1/BB/913:915 | Minor groove platform Not in a motif group | homologous IL_7RQB_028 IL_42622.2 | |
| IL_4V6O_097 | 1/BB/864:868, 1/BB/909:912 | C-loop Not in a motif group | homologous IL_7RQB_029 IL_02509.1 | |
| IL_4V6O_098 | 1/BB/870:872, 1/BB/905:907 | No text annotation Not in a motif group | homologous IL_5J7L_273 IL_95997.1 | |
| IL_4V6O_099 | 1/BB/875:879, 1/BB/898:902 | No text annotation Not in a motif group | ||
| IL_4V6O_100 | 1/BB/880:881, 1/BB/895:897 | No text annotation Not in a motif group | ||
| IL_4V6O_101 | 1/BB/881:883, 1/BB/894:895 | No text annotation Not in a motif group | ||
| IL_4V6O_102 | 1/BB/883:884, 1/BB/892:894 | Minor groove platform Not in a motif group | geometric IL_4V88_412 IL_93353.1 | |
| IL_4V6O_103 | 1/BB/994:996, 1/BB/1159:1160 | Single bulged C Not in a motif group | homologous IL_7A0S_032 IL_61258.12 | |
| IL_4V6O_104 | 1/BB/998:1002, 1/BB/1153:1157 | UAA/GAN Not in a motif group | homologous IL_5J7L_277 IL_89002.2 | |
| IL_4V6O_105 | 1/BB/1004:1011, 1/BB/1150:1151 | SSU/LSU pseudoknot Not in a motif group | homologous IL_7RQB_037 IL_15861.7 | |
| IL_4V6O_106 | 1/BB/1011:1013, 1/BB/1149:1150 | Single bulged U Not in a motif group | geometric IL_4WF9_038 IL_83039.13 | |
| IL_4V6O_107 | 1/BB/1018:1024, 1/BB/1140:1144 | No text annotation Not in a motif group | ||
| IL_4V6O_108 | 1/BB/1024:1030, 1/BB/1124:1140 | No text annotation Not in a motif group | ||
| IL_4V6O_109 | 1/BB/1031:1034, 1/BB/1121:1123 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_4WF9_041 IL_82068.2 | |
| IL_4V6O_110 | 1/BB/1038:1042, 1/BB/1113:1117 | No text annotation Not in a motif group | geometric IL_5TBW_121 IL_05145.2 | |
| IL_4V6O_111 | 1/BB/1043:1051, 1/BB/1108:1112 | No text annotation Not in a motif group | ||
| IL_4V6O_112 | 1/BB/1059:1062, 1/BB/1076:1079 | No text annotation Not in a motif group | homologous IL_6PRV_001 IL_23544.2 | |
| IL_4V6O_113 | 1/BB/1087:1090, 1/BB/1101:1102 | No text annotation Not in a motif group | homologous IL_6PRV_002 NA | |
| IL_4V6O_114 | 1/BB/1196:1199, 1/BB/1246:1250 | No text annotation Not in a motif group | ||
| IL_4V6O_115 | 1/BB/1202:1207, 1/BB/1239:1243 | No text annotation Not in a motif group | ||
| IL_4V6O_116 | 1/BB/1208:1215, 1/BB/1234:1238 | Kink-turn Not in a motif group | homologous IL_7RQB_047 IL_70923.2 | |
| IL_4V6O_117 | 1/BB/1262:1269, 1/BB/2011:2017 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_289 IL_04346.7 | |
| IL_4V6O_118 | 1/BB/1310:1313, 1/BB/1603:1604 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4WF9_049 IL_50694.2 | |
| IL_4V6O_119 | 1/BB/1319:1324, 1/BB/1330:1333 | No text annotation Not in a motif group | ||
| IL_4V6O_120 | 1/BB/1350:1355, 1/BB/1376:1381 | No text annotation Not in a motif group | ||
| IL_4V6O_121 | 1/BB/1357:1361, 1/BB/1370:1374 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_293 IL_17136.1 | |
| IL_4V6O_122 | 1/BB/1415:1416, 1/BB/1582:1587 | No text annotation Not in a motif group | ||
| IL_4V6O_123 | 1/BB/1417:1421, 1/BB/1577:1581 | UAA/GAN Not in a motif group | homologous IL_5J7L_295 IL_89002.2 | |
| IL_4V6O_124 | 1/BB/1432:1435, 1/BB/1557:1561 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_296 IL_55178.1 | |
| IL_4V6O_125 | 1/BB/1436:1440, 1/BB/1551:1556 | No text annotation Not in a motif group | ||
| IL_4V6O_126 | 1/BB/1468:1471, 1/BB/1520:1524 | No text annotation Not in a motif group | homologous IL_5J7L_299 IL_68574.2 | |
| IL_4V6O_127 | 1/BB/1473:1478, 1/BB/1513:1518 | 5x5 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_7A0S_027 IL_81631.1 | |
| IL_4V6O_128 | 1/BB/1480:1482, 1/BB/1507:1511 | No text annotation Not in a motif group | ||
| IL_4V6O_129 | 1/BB/1489:1491, 1/BB/1499:1500 | Minor groove platform Not in a motif group | geometric IL_5J7L_064 IL_42622.2 | |
| IL_4V6O_130 | 1/BB/1526:1529, 1/BB/1542:1546 | UAA/GAN variation Not in a motif group | homologous IL_5J7L_303 IL_07235.1 | |
| IL_4V6O_131 | 1/BB/1651:1656, 1/BB/2004:2006 | No text annotation Not in a motif group | homologous IL_7RQB_064 IL_12566.2 | |
| IL_4V6O_132 | 1/BB/1663:1665, 1/BB/1995:1997 | Isolated tWW turn Not in a motif group | homologous IL_5J7L_305 IL_54997.7 | |
| IL_4V6O_133 | 1/BB/1666:1669, 1/BB/1993:1994 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_066 IL_50694.2 | |
| IL_4V6O_134 | 1/BB/1669:1674, 1/BB/1990:1993 | Intercalated tWH Not in a motif group | geometric IL_7RQB_067 IL_82842.2 | |
| IL_4V6O_135 | 1/BB/1686:1691, 1/BB/1696:1702 | tSH-tSH-tHH-tHS Not in a motif group | homologous IL_7A0S_063 IL_65969.2 | |
| IL_4V6O_136 | 1/BB/1712:1718, 1/BB/1742:1746 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_309 IL_88269.3 | |
| IL_4V6O_137 | 1/BB/1720:1726, 1/BB/1734:1740 | No text annotation Not in a motif group | ||
| IL_4V6O_138 | 1/BB/1727:1728, 1/BB/1731:1733 | Single bulged C Not in a motif group | homologous IL_5J7L_311 IL_61258.12 | |
| IL_4V6O_139 | 1/BB/1770:1771, 1/BB/1980:1982 | Single bulged A Not in a motif group | homologous IL_4WF9_068 IL_37497.2 | |
| IL_4V6O_140 | 1/BB/1798:1804, 1/BB/1813:1821 | Kink-turn related Not in a motif group | homologous IL_5J7L_313 IL_17069.3 | |
| IL_4V6O_141 | 1/BB/1837:1840, 1/BB/1902:1903 | No text annotation Not in a motif group | homologous IL_4WF9_070 NA | |
| IL_4V6O_142 | 1/BB/1840:1842, 1/BB/1898:1902 | No text annotation Not in a motif group | ||
| IL_4V6O_143 | 1/BB/1864:1867, 1/BB/1874:1878 | UAA/GAN related Not in a motif group | homologous IL_5J7L_317 IL_77691.1 | |
| IL_4V6O_144 | 1/BB/1933:1934, 1/BB/1964:1967 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | geometric IL_1U9S_003 IL_69996.1 | |
| IL_4V6O_145 | 1/BB/1934:1945, 1/BB/1961:1964 | No text annotation Not in a motif group | homologous IL_4WF9_077 IL_81589.2 | |
| IL_4V6O_146 | 1/BB/2050:2052, 1/BB/2617:2618 | Major groove platform Not in a motif group | homologous IL_5J7L_320 IL_27635.1 | |
| IL_4V6O_147 | 1/BB/2064:2066, 1/BB/2444:2446 | No text annotation Not in a motif group | homologous IL_5J7L_322 NA | |
| IL_4V6O_148 | 1/BB/2067:2071, 1/BB/2438:2443 | No text annotation Not in a motif group | ||
| IL_4V6O_149 | 1/BB/2081:2083, 1/BB/2236:2239 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_5J7L_325 IL_38958.7 | |
| IL_4V6O_150 | 1/BB/2084:2088, 1/BB/2231:2235 | No text annotation Not in a motif group | ||
| IL_4V6O_151 | 1/BB/2103:2105, 1/BB/2184:2186 | Not an internal loop Not in a motif group | geometric IL_5VCI_005 IL_82842.2 | |
| IL_4V6O_152 | 1/BB/2106:2110, 1/BB/2179:2183 | No text annotation Not in a motif group | ||
| IL_4V6O_153 | 1/BB/2110:2120, 1/BB/2177:2179 | No text annotation Not in a motif group | ||
| IL_4V6O_154 | 1/BB/2120:2123, 1/BB/2175:2177 | No text annotation Not in a motif group | geometric IL_4N0T_004 IL_46796.1 | |
| IL_4V6O_155 | 1/BB/2124:2128, 1/BB/2160:2174 | No text annotation Not in a motif group | ||
| IL_4V6O_156 | 1/BB/2128:2136, 1/BB/2155:2160 | No text annotation Not in a motif group | ||
| IL_4V6O_157 | 1/BB/2202:2204, 1/BB/2220:2221 | Single bulged U Not in a motif group | homologous IL_5J7L_331 IL_83039.13 | |
| IL_4V6O_158 | 1/BB/2350:2353, 1/BB/2364:2367 | Double sheared Not in a motif group | homologous IL_4WF9_087 IL_09705.9 | |
| IL_4V6O_159 | 1/BB/2401:2403, 1/BB/2414:2415 | Single bulged U Not in a motif group | geometric IL_2A64_002 IL_83039.13 | |
| IL_4V6O_160 | 1/BB/2455:2459, 1/BB/2493:2496 | No text annotation Not in a motif group | ||
| IL_4V6O_161 | 1/BB/2459:2461, 1/BB/2489:2493 | No text annotation Not in a motif group | ||
| IL_4V6O_162 | 1/BB/2466:2470, 1/BB/2480:2484 | Triple sheared Not in a motif group | homologous IL_5J7L_338 IL_56467.8 | |
| IL_4V6O_163 | 1/BB/2507:2509, 1/BB/2579:2582 | No text annotation Not in a motif group | homologous IL_5J7L_339 NA | |
| IL_4V6O_164 | 1/BB/2510:2512, 1/BB/2574:2578 | No text annotation Not in a motif group | geometric IL_4KZD_003 IL_95997.1 | |
| IL_4V6O_165 | 1/BB/2512:2513, 1/BB/2571:2574 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_098 IL_71530.2 | |
| IL_4V6O_166 | 1/BB/2521:2523, 1/BB/2540:2544 | No text annotation Not in a motif group | ||
| IL_4V6O_167 | 1/BB/2588:2590, 1/BB/2604:2606 | No text annotation Not in a motif group | homologous IL_7RQB_100 NA | |
| IL_4V6O_168 | 1/BB/2591:2592, 1/BB/2601:2603 | Single bulged A Not in a motif group | homologous IL_7RQB_101 IL_37497.2 | |
| IL_4V6O_169 | 1/BB/2636:2640, 1/BB/2774:2782 | tSH-tHS-tHW Not in a motif group | homologous IL_4WF9_099 IL_04638.1 | |
| IL_4V6O_170 | 1/BB/2652:2658, 1/BB/2663:2668 | No text annotation Not in a motif group | ||
| IL_4V6O_171 | 1/BB/2680:2684, 1/BB/2725:2727 | C-loop Not in a motif group | homologous IL_7RQB_104 IL_63596.6 | |
| IL_4V6O_172 | 1/BB/2687:2691, 1/BB/2718:2722 | No text annotation Not in a motif group | homologous IL_4WF9_102 IL_08296.3 | |
| IL_4V6O_173 | 1/BB/2695:2696, 1/BB/2711:2714 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_349 IL_71530.2 | |
| IL_4V6O_174 | 1/BB/2737:2742, 1/BB/2762:2767 | UAA/GAN with extra cWW Not in a motif group | homologous IL_5J7L_350 IL_49767.5 | |
| IL_4V6O_175 | 1/BB/2806:2811, 1/BB/2889:2892 | No text annotation Not in a motif group | ||
| IL_4V6O_177 | 1/BB/2838:2839, 1/BB/2878:2880 | Major groove intercalation Not in a motif group | homologous IL_5J7L_352 IL_16396.2 | |
| IL_4V6O_178 | 1/BB/2843:2846, 1/BB/2870:2874 | No text annotation Not in a motif group | homologous IL_7RQB_109 IL_58764.3 | |
| IL_4V6O_179 | 1/BB/2847:2852, 1/BB/2865:2869 | No text annotation Not in a motif group | homologous IL_7A0S_101 IL_83162.5 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4V6O_176 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_4V6O_001 | 1/AA/45:47, 1/AA/361:369, 1/AA/392:396 | No text annotation Not in a motif group | ||
| J3_4V6O_002 | 1/AA/586:588, 1/AA/651:654, 1/AA/754:755 | No text annotation Not in a motif group | ||
| J3_4V6O_003 | 1/AA/672:673, 1/AA/717:725, 1/AA/732:734 | No text annotation Not in a motif group | ||
| J3_4V6O_004 | 1/AA/826:829, 1/AA/857:861, 1/AA/868:874 | No text annotation Not in a motif group | homologous J3_5J7L_004 NA | |
| J3_4V6O_005 | 1/AA/941:946, 1/AA/1235:1237, 1/AA/1337:1342 | No text annotation Not in a motif group | ||
| J3_4V6O_006 | 1/AA/954:962, 1/AA/973:984, 1/AA/1221:1226 | No text annotation Not in a motif group | ||
| J3_4V6O_007 | 1/AA/990:993, 1/AA/1045:1047, 1/AA/1210:1215 | No text annotation Not in a motif group | ||
| J3_4V6O_008 | 1/AA/1003:1006, 1/AA/1023:1027, 1/AA/1034:1037 | No text annotation Not in a motif group | ||
| J3_4V6O_009 | 1/AA/1063:1068, 1/AA/1107:1114, 1/AA/1186:1193 | No text annotation Not in a motif group | ||
| J3_4V6O_010 | 1/AA/1073:1074, 1/AA/1083:1087, 1/AA/1098:1102 | No text annotation Not in a motif group | homologous J3_6CZR_024 NA | |
| J3_4V6O_011 | 1/AA/1116:1119, 1/AA/1154:1158, 1/AA/1181:1184 | No text annotation Not in a motif group | ||
| J3_4V6O_012 | 1/AA/1237:1241, 1/AA/1296:1303, 1/AA/1334:1337 | No text annotation Not in a motif group | ||
| J3_4V6O_013 | 1/BA/10:16, 1/BA/68:70, 1/BA/106:110 | No text annotation Not in a motif group | ||
| J3_4V6O_014 | 1/BB/30:31, 1/BB/474:481, 1/BB/509:510 | No text annotation Not in a motif group | homologous J3_7RQB_001 NA | |
| J3_4V6O_015 | 1/BB/55:57, 1/BB/70:76, 1/BB/110:115 | No text annotation Not in a motif group | ||
| J3_4V6O_016 | 1/BB/683:689, 1/BB/773:775, 1/BB/791:794 | No text annotation Not in a motif group | homologous J3_4WF9_002 NA | |
| J3_4V6O_017 | 1/BB/698:700, 1/BB/732:736, 1/BB/760:763 | No text annotation Not in a motif group | homologous J3_7RQB_005 NA | |
| J3_4V6O_018 | 1/BB/1053:1059, 1/BB/1079:1087, 1/BB/1102:1106 | No text annotation Not in a motif group | ||
| J3_4V6O_019 | 1/BB/1298:1303, 1/BB/1625:1627, 1/BB/1639:1642 | No text annotation Not in a motif group | homologous J3_5J7L_041 NA | |
| J3_4V6O_020 | 1/BB/1306:1309, 1/BB/1605:1611, 1/BB/1620:1622 | No text annotation Not in a motif group | homologous J3_7A0S_007 NA | |
| J3_4V6O_021 | 1/BB/1344:1350, 1/BB/1381:1385, 1/BB/1402:1403 | No text annotation Not in a motif group | ||
| J3_4V6O_022 | 1/BB/2091:2093, 1/BB/2196:2200, 1/BB/2223:2228 | No text annotation Not in a motif group | homologous J3_5J7L_044 NA | |
| J3_4V6O_023 | 1/BB/2295:2299, 1/BB/2317:2323, 1/BB/2332:2337 | No text annotation Not in a motif group | ||
| J3_4V6O_024 | 1/BB/2517:2520, 1/BB/2545:2547, 1/BB/2561:2567 | No text annotation Not in a motif group | ||
| J3_4V6O_025 | 1/BB/2789:2791, 1/BB/2805:2806, 1/BB/2892:2894 | No text annotation Not in a motif group | homologous J3_5J7L_047 NA | |
| J3_4V6O_026 | 1/BB/2812:2815, 1/BB/2831:2836, 1/BB/2882:2888 | No text annotation Not in a motif group | homologous J3_5J7L_048 NA |
Problematic loops
No problematic loops
Coloring options: