Valid loops

#loop idlocationannotation
(mapped to, source)
motif group
(similar to)
1/A/1910:1920
geometric
HL_5TBW_049
NA

HL_98248.1*
1/B/38:44NANA
1/B/86:90NANA
1/a/12:22NANA
1/a/80:89NANA
1/a/158:163NANA
1/a/186:191NANA
1/a/202:215NANA
1/a/259:267NANA
1/a/296:301NANA
1/a/320:333NANA
1/a/342:347NANA
1/a/379:384NANA
1/a/419:424NANA
1/a/462:470NANA
1/a/521:528NANA
1/a/617:623NANA
1/a/689:698NANA
1/a/726:731NANA
1/a/786:796NANA
1/a/839:847NANA
1/a/862:867NANA
1/a/897:902NANA
1/a/963:972NANA
1/a/1012:1017NANA
1/a/1029:1033NANA
1/a/1076:1081NANA
1/a/1089:1096NANA
1/a/1133:1141NANA
1/a/1165:1171NANA
1/a/1265:1270NANA
1/a/1314:1323NANA
1/a/1356:1366NANA
1/a/1449:1454NANA
1/a/1515:1520NANA
1/x/12:22NANA
1/x/31:39NANA
1/x/53:61NANA
1/y/12:22NANA
1/y/31:39NANA
1/y/53:61NANA

Problematic loops

#loop idProblemSequence
HL_5U4I_001
geometric
HL_5J7L_134
HL_5U4I_002
geometric
HL_5J7L_135
HL_5U4I_003
homologous
HL_7RQB_003
HL_5U4I_004NA
HL_5U4I_005
geometric
HL_5J7L_138
HL_5U4I_006
geometric
HL_4WF9_006
HL_5U4I_007
homologous
HL_7RQB_007
HL_5U4I_008
homologous
HL_7RQB_008
HL_5U4I_009
homologous
HL_7RQB_010
HL_5U4I_010
homologous
HL_7RQB_011
HL_5U4I_011
homologous
HL_7RQB_012
HL_5U4I_012
homologous
HL_7RQB_013
HL_5U4I_013
homologous
HL_7RQB_014
HL_5U4I_014
homologous
HL_7RQB_015
HL_5U4I_015
homologous
HL_7RQB_016
HL_5U4I_016
homologous
HL_7RQB_017
HL_5U4I_017T-loop with 2 stacked bulged bases
geometric
HL_5J7L_150
HL_5U4I_018
geometric
HL_5J7L_151
HL_5U4I_019
homologous
HL_7RQB_020
HL_5U4I_020NA
HL_5U4I_021
homologous
HL_7RQB_022
HL_5U4I_022
homologous
HL_7RQB_023
HL_5U4I_023
homologous
HL_7RQB_024
HL_5U4I_024
homologous
HL_7RQB_025
HL_5U4I_025
geometric
HL_4LFB_005
HL_5U4I_026
geometric
HL_3RG5_006
HL_5U4I_027
homologous
HL_7RQB_028
HL_5U4I_028NA
HL_5U4I_029
homologous
HL_7RQB_030
HL_5U4I_030NA
HL_5U4I_031
homologous
HL_7RQB_032
HL_5U4I_032
homologous
HL_7RQB_033
HL_5U4I_033
homologous
HL_7RQB_034
HL_5U4I_034
homologous
HL_7RQB_035
HL_5U4I_035
homologous
HL_7RQB_036
HL_5U4I_036
geometric
HL_7A0S_017
HL_5U4I_037
homologous
HL_7RQB_038
HL_5U4I_038UNCG
geometric
HL_4AY2_001
HL_5U4I_039
homologous
HL_7RQB_039
HL_5U4I_040
homologous
HL_7RQB_040
HL_5U4I_041GNRA with one bulged base
geometric
HL_2XLK_001
HL_5U4I_042
homologous
HL_7RQB_042
HL_5U4I_043
geometric
HL_5J7L_018
HL_5U4I_044
homologous
HL_7RQB_044
HL_5U4I_045
homologous
HL_7RQB_045
HL_5U4I_046
homologous
HL_7RQB_046
HL_5U4I_047
geometric
HL_5U3G_001
HL_5U4I_049
homologous
HL_7RQB_049
HL_5U4I_050
homologous
HL_7RQB_050
HL_5U4I_051
homologous
HL_7RQB_051
HL_5U4I_052
geometric
HL_5J7L_185
HL_5U4I_053
homologous
HL_7RQB_053
HL_5U4I_054
homologous
HL_7RQB_054
HL_5U4I_055
homologous
HL_7RQB_055
HL_5U4I_056
homologous
HL_7RQB_056
HL_5U4I_057Other HL
geometric
HL_5J7L_190
HL_5U4I_058
homologous
HL_7RQB_058
HL_5U4I_059
homologous
HL_7RQB_059
HL_5U4I_060
homologous
HL_7RQB_060
HL_5U4I_061
homologous
HL_7RQB_061
HL_5U4I_062
homologous
HL_7RQB_062
HL_5U4I_063
homologous
HL_7RQB_063
HL_5U4I_064
homologous
HL_7RQB_064
HL_5U4I_065Ribsomal LSU H95
geometric
HL_5J7L_198
HL_5U4I_066NA
HL_5U4I_067NA
HL_5U4I_068
homologous
HL_7RQB_068
HL_5U4I_069
homologous
HL_7RQB_069

Valid loops

#loop idlocationannotation
(mapped to, source)
motif group
(similar to)
1/B/17:18,
1/B/65:67
NANA
1/B/23:28,
1/B/56:60
NANA
1/B/30:31,
1/B/51:54
NANA
1/B/34:38,
1/B/44:48
NANA
1/B/71:79,
1/B/97:105
NANA
1/a/30:33,
1/a/551:553
NANA
1/a/44:45,
1/a/396:398
NANA
1/a/47:52,
1/a/359:361
NANA
1/a/54:56,
1/a/356:357
NANA
1/a/63:66,
1/a/103:104
NANA
1/a/67:69,
1/a/99:102
NANA
1/a/70:73,
1/a/97:98
NANA
1/a/75:78,
1/a/91:95
NANA
1/a/128:131,
1/a/231:233
NANA
1/a/132:136,
1/a/227:230
NANA
1/a/144:146,
1/a/176:178
NANA
1/a/147:153,
1/a/168:175
NANA
1/a/242:247,
1/a/277:284
NANA
1/a/249:252,
1/a/274:275
NANA
1/a/291:293,
1/a/304:309
NANA
1/a/367:369,
1/a/392:393
NANA
1/a/370:375,
1/a/389:391
NANA
1/a/375:376,
1/a/387:389
NANA
1/a/409:416,
1/a/427:433
NANA
1/a/440:442,
1/a/492:497
NANA
1/a/446:450,
1/a/483:488
NANA
1/a/450:455,
1/a/477:483
NANA
1/a/504:511,
1/a/540:541
NANA
1/a/514:521,
1/a/528:537
NANA
1/a/569:575,
1/a/880:881
NANA
1/a/580:584,
1/a/757:761
NANA
1/a/594:596,
1/a/644:645
NANA
1/a/597:598,
1/a/640:643
NANA
1/a/604:613,
1/a/627:634
NANA
1/a/654:655,
1/a/751:754
NANA
1/a/658:659,
1/a/746:748
NANA
1/a/662:666,
1/a/740:743
NANA
1/a/673:678,
1/a/712:717
NANA
1/a/684:688,
1/a/699:706
NANA
1/a/774:778,
1/a/804:805
NANA
1/a/779:783,
1/a/799:803
NANA
1/a/887:894,
1/a/905:910
NANA
1/a/922:923,
1/a/1393:1395
NANA
1/a/925:927,
1/a/1390:1391
NANA
1/a/933:935,
1/a/1380:1384
NANA
1/a/953:954,
1/a/1226:1228
NANA
1/a/993:997,
1/a/1044:1045
NANA
1/a/998:1000,
1/a/1040:1043
NANA
1/a/1027:1029,
1/a/1033:1034
NANA
1/a/1048:1050,
1/a/1208:1209
NANA
1/a/1050:1052,
1/a/1206:1208
NANA
1/a/1052:1056,
1/a/1204:1206
NANA
1/a/1057:1058,
1/a/1199:1203
NANA
1/a/1060:1061,
1/a/1195:1197
NANA
1/a/1061:1063,
1/a/1193:1195
NANA
1/a/1124:1128,
1/a/1144:1149
NANA
1/a/1129:1132,
1/a/1142:1143
NANA
1/a/1158:1161,
1/a/1175:1181
NANA
1/a/1247:1253,
1/a/1284:1290
NANA
1/a/1255:1258,
1/a/1277:1282
NANA
1/a/1259:1263,
1/a/1272:1276
NANA
1/a/1303:1308,
1/a/1329:1334
NANA
1/a/1399:1401,
1/a/1501:1504
NANA
1/a/1401:1404,
1/a/1497:1501
NANA
1/a/1405:1409,
1/a/1491:1496
NANA
1/a/1412:1414,
1/a/1486:1488
NANA
1/a/1416:1419,
1/a/1481:1484
NANA
1/a/1430:1435,
1/a/1466:1470
NANA
1/a/1440:1442,
1/a/1460:1461
NANA
1/a/1445:1448,
1/a/1455:1457
NANA

Problematic loops

#loop idProblemSequence
IL_5U4I_001Triple sheared with non-canonical cWW
homologous
IL_7RQB_001
IL_5U4I_002Single bulged A
homologous
IL_7RQB_002
IL_5U4I_003Minor groove platform
homologous
IL_7RQB_003
IL_5U4I_004Kink-turn
homologous
IL_7RQB_004
IL_5U4I_005Single stack bend
geometric
IL_4WF9_007
IL_5U4I_006Single stack bend
geometric
IL_5J7L_032
IL_5U4I_007Single stack bend
homologous
IL_7RQB_005
IL_5U4I_0088x7 Sarcin-Ricin; G-bulge
homologous
IL_7RQB_006
IL_5U4I_0097x6 Sarcin-Ricin; G-bulge
homologous
IL_7RQB_007
IL_5U4I_010
geometric
IL_5J7L_252
IL_5U4I_011
geometric
IL_5J7L_253
IL_5U4I_012
homologous
IL_7RQB_013
IL_5U4I_013
homologous
IL_7RQB_014
IL_5U4I_014Double sheared
geometric
IL_5J7L_256
IL_5U4I_015
homologous
IL_7RQB_015
IL_5U4I_016AAA cross-strand stack
homologous
IL_7RQB_016
IL_5U4I_017
homologous
IL_7RQB_017
IL_5U4I_018
geometric
IL_7RQB_018
IL_5U4I_019Single bulged A
geometric
IL_4V9F_025
IL_5U4I_020Single bulged G
homologous
IL_7RQB_020
IL_5U4I_021Triple sheared
geometric
IL_4WF9_024
IL_5U4I_022Major groove platform
geometric
IL_4WF9_026
IL_5U4I_023Multiple bulged bases
homologous
IL_7RQB_023
IL_5U4I_024NA
IL_5U4I_025Stack outside cWW
geometric
IL_5J7L_268
IL_5U4I_026Single stack bend
geometric
IL_5J7L_032
IL_5U4I_0277x7 Sarcin-Ricin with intercalated A; G-bulge
geometric
IL_5J7L_270
IL_5U4I_028Minor groove platform
homologous
IL_7RQB_028
IL_5U4I_029C-loop
homologous
IL_7RQB_029
IL_5U4I_030Tandem non-canonical cWW pairs
geometric
IL_5C5W_003
IL_5U4I_031Triple sheared
geometric
IL_4V9F_085
IL_5U4I_032Single bulged A
homologous
IL_7RQB_033
IL_5U4I_033Single bulged C
homologous
IL_7RQB_035
IL_5U4I_034UAA/GAN
homologous
IL_7RQB_036
IL_5U4I_035SSU/LSU pseudoknot
homologous
IL_7RQB_037
IL_5U4I_036Single bulged U
geometric
IL_4WF9_038
IL_5U4I_037
geometric
IL_5J7L_280
IL_5U4I_038
geometric
IL_5J7L_281
IL_5U4I_039Isolated non-canonical cWW with bulges
homologous
IL_7RQB_041
IL_5U4I_040Tandem non-canonical cWW pairs
geometric
IL_5J7L_283
IL_5U4I_041Kink-turn
homologous
IL_7RQB_042
IL_5U4I_042
geometric
IL_5D8H_002
IL_5U4I_043Major groove platform
geometric
IL_4V9F_044
IL_5U4I_044NA
IL_5U4I_045
geometric
IL_5J7L_287
IL_5U4I_046Kink-turn
homologous
IL_7RQB_047
IL_5U4I_0478x7 Sarcin-Ricin; G-bulge
homologous
IL_7RQB_049
IL_5U4I_048Major groove platform; stack outside cWW
homologous
IL_7RQB_050
IL_5U4I_049C-loop
homologous
IL_7RQB_051
IL_5U4I_050UAA/GAN
geometric
IL_5J7L_292
IL_5U4I_051tSH-tHW-tHS
homologous
IL_7RQB_053
IL_5U4I_052Single stack bend
geometric
IL_4LFB_041
IL_5U4I_053
geometric
IL_5J7L_294
IL_5U4I_054UAA/GAN
homologous
IL_7RQB_055
IL_5U4I_055Tandem non-canonical cWW pairs
geometric
IL_5J7L_296
IL_5U4I_056tSH-tHW
homologous
IL_7RQB_057
IL_5U4I_057Single bulged U
geometric
IL_5TBW_130
IL_5U4I_058
geometric
IL_3BNN_006
IL_5U4I_059tSH-tHW-tHS
geometric
IL_5J7L_300
IL_5U4I_060
geometric
IL_5J7L_301
IL_5U4I_061Single bulged A
geometric
IL_5WWT_001
IL_5U4I_062UAA/GAN variation
geometric
IL_6CZR_170
IL_5U4I_063
homologous
IL_7RQB_064
IL_5U4I_064Isolated tWW turn
homologous
IL_7RQB_065
IL_5U4I_065Major groove platform; stack outside cWW
geometric
IL_7RQB_066
IL_5U4I_066Intercalated tWH
homologous
IL_7RQB_067
IL_5U4I_067tSH-tSH-tHH-tHS
geometric
IL_7RQB_068
IL_5U4I_068NA
IL_5U4I_069NA
IL_5U4I_070Single bulged A
homologous
IL_7RQB_069
IL_5U4I_071Kink-turn related
homologous
IL_7RQB_070
IL_5U4I_072Major groove outside cWW, minor groove, intercalation pocket
homologous
IL_7RQB_071
IL_5U4I_073Major groove outside cWW, minor groove, intercalation pocket
homologous
IL_7RQB_072
IL_5U4I_074Major groove minor groove platform; mini C-loop
geometric
IL_5J7L_316
IL_5U4I_075NA
IL_5U4I_076Multiple bulged bases
geometric
IL_7RQB_076
IL_5U4I_077
geometric
IL_7A0S_072
IL_5U4I_078Major groove platform
homologous
IL_7RQB_078
IL_5U4I_079
geometric
IL_5J7L_321
IL_5U4I_080
geometric
IL_6OL3_002
IL_5U4I_081
geometric
IL_5H1K_001
IL_5U4I_082Minor groove platform
geometric
IL_5J7L_324
IL_5U4I_083Isolated tHS basepair with bulges
homologous
IL_7RQB_082
IL_5U4I_084
homologous
IL_7RQB_083
IL_5U4I_085
geometric
IL_5UNE_006
IL_5U4I_086
geometric
IL_5TBW_121
IL_5U4I_087NA
IL_5U4I_088NA
IL_5U4I_089Kink-turn
geometric
IL_5J7L_330
IL_5U4I_090Tandem non-canonical cWW pairs
geometric
IL_4V88_429
IL_5U4I_091Double sheared
homologous
IL_7RQB_089
IL_5U4I_092NA
IL_5U4I_093NA
IL_5U4I_094Major groove platform with extra pair
geometric
IL_7RQB_093
IL_5U4I_095Major groove minor groove platform with extra cWW
homologous
IL_7RQB_094
IL_5U4I_096Triple sheared
homologous
IL_7RQB_095
IL_5U4I_097Major groove platform with extra pair
geometric
IL_7RQB_093
IL_5U4I_098Isolated non-canonical cWW with bulges
geometric
IL_5J7L_340
IL_5U4I_099Multiple bulged bases
homologous
IL_7RQB_098
IL_5U4I_100Minor groove platform with intercalation
homologous
IL_7RQB_099
IL_5U4I_101
homologous
IL_7RQB_100
IL_5U4I_102Single bulged A
homologous
IL_7RQB_101
IL_5U4I_103tSH-tHS-tHW
homologous
IL_7RQB_102
IL_5U4I_1047x6 Sarcin-Ricin; G-bulge
geometric
IL_4V9F_106
IL_5U4I_105C-loop
homologous
IL_7RQB_104
IL_5U4I_106
homologous
IL_7RQB_105
IL_5U4I_107Multiple bulged bases
homologous
IL_7RQB_106
IL_5U4I_108UAA/GAN with extra cWW
homologous
IL_7RQB_107
IL_5U4I_109
geometric
IL_5J7L_351
IL_5U4I_110Isolated non-canonical cWW with bulges
geometric
IL_1U6B_001
IL_5U4I_111Multiple bulged bases with non-canonical cWW
geometric
IL_5J7L_353
IL_5U4I_112NA

Valid loops

#loop idlocationannotation
(mapped to, source)
motif group
(similar to)
1/B/10:16,
1/B/68:70,
1/B/106:110
NANA
1/a/46:47,
1/a/361:367,
1/a/393:395
NANA
1/a/586:588,
1/a/651:654,
1/a/754:755
NANA
1/a/672:673,
1/a/717:725,
1/a/732:734
NANA
1/a/826:829,
1/a/857:861,
1/a/868:874
NANA
1/a/936:939,
1/a/1344:1350,
1/a/1372:1379
NANA
1/a/943:946,
1/a/1235:1237,
1/a/1337:1340
NANA
1/a/955:962,
1/a/973:984,
1/a/1221:1225
NANA
1/a/990:993,
1/a/1045:1047,
1/a/1210:1215
NANA
1/a/1063:1068,
1/a/1107:1113,
1/a/1187:1193
NANA
1/a/1073:1074,
1/a/1083:1087,
1/a/1098:1102
NANA
1/a/1116:1118,
1/a/1155:1158,
1/a/1181:1184
NANA
1/a/1237:1241,
1/a/1296:1303,
1/a/1334:1337
NANA

Problematic loops

#loop idProblemSequence
J3_5U4I_001NA
J3_5U4I_002
homologous
J3_7RQB_002
J3_5U4I_003NA
J3_5U4I_004
homologous
J3_7RQB_005
J3_5U4I_005NA
J3_5U4I_006
homologous
J3_7RQB_007
J3_5U4I_007
homologous
J3_7RQB_008
J3_5U4I_008
homologous
J3_7RQB_009
J3_5U4I_009
homologous
J3_7RQB_010
J3_5U4I_010NA
J3_5U4I_011NA
J3_5U4I_012
homologous
J3_7RQB_012
J3_5U4I_013NA
J3_5U4I_014NA

Coloring options:
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