5U4I Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
HL_5U4I_048 | 1/A/1910:1920 | No text annotation Not in a motif group | homologous HL_5J7L_181 NA | |
HL_5U4I_070 | 1/B/38:44 | No text annotation Not in a motif group | geometric HL_2Y9H_003 HL_16173.1 | |
HL_5U4I_071 | 1/B/86:90 | No text annotation Not in a motif group | homologous HL_5J7L_204 HL_38927.2 | |
HL_5U4I_072 | 1/a/12:22 | No text annotation Not in a motif group | homologous HL_5J7L_001 HL_89881.2 | |
HL_5U4I_073 | 1/a/80:89 | No text annotation Not in a motif group | ||
HL_5U4I_074 | 1/a/158:163 | GNRA Not in a motif group | homologous HL_5J7L_003 HL_42097.1 | |
HL_5U4I_075 | 1/a/186:191 | GNRA Not in a motif group | homologous HL_5J7L_004 HL_42097.1 | |
HL_5U4I_076 | 1/a/202:215 | No text annotation Not in a motif group | ||
HL_5U4I_077 | 1/a/259:267 | No text annotation Not in a motif group | homologous HL_5J7L_006 HL_69023.2 | |
HL_5U4I_078 | 1/a/296:301 | GNRA Not in a motif group | homologous HL_5J7L_007 HL_42097.1 | |
HL_5U4I_079 | 1/a/320:333 | No text annotation Not in a motif group | homologous HL_4LFB_008 HL_81205.2 | |
HL_5U4I_080 | 1/a/342:347 | UNCG Not in a motif group | homologous HL_5J7L_009 HL_03562.2 | |
HL_5U4I_081 | 1/a/379:384 | GNRA Not in a motif group | homologous HL_5J7L_010 HL_42097.1 | |
HL_5U4I_082 | 1/a/419:424 | UNCG Not in a motif group | homologous HL_5J7L_011 HL_03562.2 | |
HL_5U4I_083 | 1/a/462:470 | No text annotation Not in a motif group | homologous HL_5J7L_012 HL_84085.2 | |
HL_5U4I_084 | 1/a/521:528 | No text annotation Not in a motif group | geometric HL_5AMQ_001 HL_98984.2 | |
HL_5U4I_085 | 1/a/617:623 | No text annotation Not in a motif group | homologous HL_6CZR_085 HL_26881.1 | |
HL_5U4I_086 | 1/a/689:698 | No text annotation Not in a motif group | homologous HL_5J7L_015 HL_12326.1 | |
HL_5U4I_087 | 1/a/726:731 | Other HL Not in a motif group | homologous HL_5J7L_016 HL_87030.2 | |
HL_5U4I_088 | 1/a/786:796 | No text annotation Not in a motif group | homologous HL_5J7L_017 HL_12326.1 | |
HL_5U4I_089 | 1/a/839:847 | No text annotation Not in a motif group | ||
HL_5U4I_090 | 1/a/862:867 | GNRA Not in a motif group | homologous HL_5J7L_019 HL_42097.1 | |
HL_5U4I_091 | 1/a/897:902 | GNRA Not in a motif group | homologous HL_4LFB_020 HL_42097.1 | |
HL_5U4I_092 | 1/a/963:972 | No text annotation Not in a motif group | homologous HL_4LFB_021 NA | |
HL_5U4I_093 | 1/a/1012:1017 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_42097.1 | |
HL_5U4I_094 | 1/a/1029:1033 | No text annotation Not in a motif group | ||
HL_5U4I_095 | 1/a/1076:1081 | GNRA Not in a motif group | homologous HL_5J7L_023 HL_42097.1 | |
HL_5U4I_096 | 1/a/1089:1096 | No text annotation Not in a motif group | homologous HL_4LFB_025 HL_71554.2 | |
HL_5U4I_097 | 1/a/1133:1141 | No text annotation Not in a motif group | ||
HL_5U4I_098 | 1/a/1165:1171 | No text annotation Not in a motif group | homologous HL_5J7L_026 HL_90617.2 | |
HL_5U4I_099 | 1/a/1265:1270 | Other HL Not in a motif group | homologous HL_4LFB_028 HL_42097.1 | |
HL_5U4I_100 | 1/a/1314:1323 | No text annotation Not in a motif group | homologous HL_4LFB_029 HL_89380.2 | |
HL_5U4I_101 | 1/a/1356:1366 | No text annotation Not in a motif group | homologous HL_5J7L_029 HL_96366.1 | |
HL_5U4I_102 | 1/a/1449:1454 | UNCG Not in a motif group | homologous HL_4LFB_031 HL_03562.2 | |
HL_5U4I_103 | 1/a/1515:1520 | No text annotation Not in a motif group | homologous HL_6CZR_103 NA | |
HL_5U4I_104 | 1/x/12:22 | No text annotation Not in a motif group | homologous HL_1QF6_001 NA | |
HL_5U4I_105 | 1/x/31:39 | tRNA anticodon loop Not in a motif group | homologous HL_4TUE_034 HL_53597.2 | |
HL_5U4I_106 | 1/x/53:61 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5WT1_003 HL_71309.1 | |
HL_5U4I_107 | 1/y/12:22 | No text annotation Not in a motif group | homologous HL_4LCK_001 NA | |
HL_5U4I_108 | 1/y/31:39 | No text annotation Not in a motif group | homologous HL_5UD5_002 HL_49288.1 | |
HL_5U4I_109 | 1/y/53:61 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_1QU2_003 HL_71309.1 |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
HL_5U4I_001 | No text annotation | ||
HL_5U4I_002 | No text annotation | ||
HL_5U4I_003 | No text annotation | ||
HL_5U4I_004 | No text annotation | ||
HL_5U4I_005 | No text annotation | ||
HL_5U4I_006 | No text annotation | ||
HL_5U4I_007 | No text annotation | ||
HL_5U4I_008 | No text annotation | ||
HL_5U4I_009 | T-loop with 1 bulged base | ||
HL_5U4I_010 | No text annotation | ||
HL_5U4I_011 | No text annotation | ||
HL_5U4I_012 | No text annotation | ||
HL_5U4I_013 | No text annotation | ||
HL_5U4I_014 | No text annotation | ||
HL_5U4I_015 | No text annotation | ||
HL_5U4I_016 | No text annotation | ||
HL_5U4I_017 | T-loop with 2 stacked bulged bases | ||
HL_5U4I_018 | No text annotation | ||
HL_5U4I_019 | GNRA | ||
HL_5U4I_020 | No text annotation | ||
HL_5U4I_021 | No text annotation | ||
HL_5U4I_022 | No text annotation | ||
HL_5U4I_023 | No text annotation | ||
HL_5U4I_024 | No text annotation | ||
HL_5U4I_025 | No text annotation | ||
HL_5U4I_026 | No text annotation | ||
HL_5U4I_027 | No text annotation | ||
HL_5U4I_028 | No text annotation | ||
HL_5U4I_029 | No text annotation | ||
HL_5U4I_030 | No text annotation | ||
HL_5U4I_031 | Other HL | ||
HL_5U4I_032 | T-loop with 2 stacked bulged bases | ||
HL_5U4I_033 | No text annotation | ||
HL_5U4I_034 | Other HL | ||
HL_5U4I_035 | No text annotation | ||
HL_5U4I_036 | No text annotation | ||
HL_5U4I_037 | No text annotation | ||
HL_5U4I_038 | UNCG | ||
HL_5U4I_039 | No text annotation | ||
HL_5U4I_040 | No text annotation | ||
HL_5U4I_041 | GNRA with one bulged base | ||
HL_5U4I_042 | UNCG | ||
HL_5U4I_043 | No text annotation | ||
HL_5U4I_044 | No text annotation | ||
HL_5U4I_045 | No text annotation | ||
HL_5U4I_046 | No text annotation | ||
HL_5U4I_047 | Other HL | ||
HL_5U4I_049 | No text annotation | ||
HL_5U4I_050 | No text annotation | ||
HL_5U4I_051 | No text annotation | ||
HL_5U4I_052 | No text annotation | ||
HL_5U4I_053 | No text annotation | ||
HL_5U4I_054 | No text annotation | ||
HL_5U4I_055 | No text annotation | ||
HL_5U4I_056 | No text annotation | ||
HL_5U4I_057 | Other HL | ||
HL_5U4I_058 | GNRA | ||
HL_5U4I_059 | No text annotation | ||
HL_5U4I_060 | No text annotation | ||
HL_5U4I_061 | No text annotation | ||
HL_5U4I_062 | No text annotation | ||
HL_5U4I_063 | GNRA | ||
HL_5U4I_064 | GNRA | ||
HL_5U4I_065 | Ribsomal LSU H95 | ||
HL_5U4I_066 | No text annotation | ||
HL_5U4I_067 | Other HL | ||
HL_5U4I_068 | No text annotation | ||
HL_5U4I_069 | Other HL |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
IL_5U4I_113 | 1/B/17:18, 1/B/65:67 | Major groove intercalation Not in a motif group | homologous IL_5J7L_355 IL_37497.2 | |
IL_5U4I_114 | 1/B/23:28, 1/B/56:60 | No text annotation Not in a motif group | homologous IL_5J7L_356 IL_18472.2 | |
IL_5U4I_115 | 1/B/30:31, 1/B/51:54 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_7RQB_113 IL_09061.6 | |
IL_5U4I_116 | 1/B/34:38, 1/B/44:48 | Symmetric double minor groove platform Not in a motif group | homologous IL_5J7L_358 IL_58103.6 | |
IL_5U4I_117 | 1/B/71:79, 1/B/97:105 | Bacterial 5S Loop E Not in a motif group | homologous IL_5J7L_359 IL_56455.3 | |
IL_5U4I_118 | 1/a/30:33, 1/a/551:553 | No text annotation Not in a motif group | geometric IL_5D0B_001 IL_95997.1 | |
IL_5U4I_119 | 1/a/44:45, 1/a/396:398 | Single bulged A Not in a motif group | homologous IL_5J7L_002 IL_37497.2 | |
IL_5U4I_120 | 1/a/47:52, 1/a/359:361 | No text annotation Not in a motif group | homologous IL_5J7L_003 IL_11178.1 | |
IL_5U4I_121 | 1/a/54:56, 1/a/356:357 | Minor groove platform Not in a motif group | homologous IL_4LFB_004 IL_93353.1 | |
IL_5U4I_122 | 1/a/63:66, 1/a/103:104 | Multiple bulged bases Not in a motif group | homologous IL_6CZR_117 IL_76389.1 | |
IL_5U4I_123 | 1/a/67:69, 1/a/99:102 | Minor groove platform with extra cWW Not in a motif group | homologous IL_5J7L_006 IL_65006.1 | |
IL_5U4I_124 | 1/a/70:73, 1/a/97:98 | Minor groove platform Not in a motif group | homologous IL_5J7L_007 IL_15052.1 | |
IL_5U4I_125 | 1/a/75:78, 1/a/91:95 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_3WBM_003 IL_30621.2 | |
IL_5U4I_126 | 1/a/128:131, 1/a/231:233 | No text annotation Not in a motif group | ||
IL_5U4I_127 | 1/a/132:136, 1/a/227:230 | Minor groove platform related Not in a motif group | homologous IL_5J7L_010 IL_58764.3 | |
IL_5U4I_128 | 1/a/144:146, 1/a/176:178 | Isolated cWH basepair Not in a motif group | geometric IL_4J50_003 IL_51629.2 | |
IL_5U4I_129 | 1/a/147:153, 1/a/168:175 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_5J7L_012 IL_80604.2 | |
IL_5U4I_130 | 1/a/242:247, 1/a/277:284 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_5J7L_014 IL_45067.2 | |
IL_5U4I_131 | 1/a/249:252, 1/a/274:275 | No text annotation Not in a motif group | homologous IL_4LFB_012 IL_48100.2 | |
IL_5U4I_132 | 1/a/291:293, 1/a/304:309 | No text annotation Not in a motif group | ||
IL_5U4I_133 | 1/a/367:369, 1/a/392:393 | Single bulged U Not in a motif group | homologous IL_4LFB_014 IL_83039.13 | |
IL_5U4I_134 | 1/a/370:375, 1/a/389:391 | No text annotation Not in a motif group | ||
IL_5U4I_135 | 1/a/375:376, 1/a/387:389 | Single bulged G Not in a motif group | geometric IL_5J7L_019 IL_00225.2 | |
IL_5U4I_136 | 1/a/409:416, 1/a/427:433 | No text annotation Not in a motif group | homologous IL_5J7L_020 IL_28026.1 | |
IL_5U4I_137 | 1/a/440:442, 1/a/492:497 | No text annotation Not in a motif group | homologous IL_5J7L_021 IL_22248.1 | |
IL_5U4I_138 | 1/a/446:450, 1/a/483:488 | tSH-tHW-tWW Not in a motif group | geometric IL_5J7L_022 IL_88269.3 | |
IL_5U4I_139 | 1/a/450:455, 1/a/477:483 | No text annotation Not in a motif group | homologous IL_5J7L_023 IL_70801.1 | |
IL_5U4I_140 | 1/a/504:511, 1/a/540:541 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5J7L_024 IL_15861.7 | |
IL_5U4I_141 | 1/a/514:521, 1/a/528:537 | No text annotation Not in a motif group | ||
IL_5U4I_142 | 1/a/569:575, 1/a/880:881 | No text annotation Not in a motif group | homologous IL_5J7L_026 IL_69996.1 | |
IL_5U4I_143 | 1/a/580:584, 1/a/757:761 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_027 IL_17136.1 | |
IL_5U4I_144 | 1/a/594:596, 1/a/644:645 | Major groove platform Not in a motif group | homologous IL_5J7L_028 IL_27635.1 | |
IL_5U4I_145 | 1/a/597:598, 1/a/640:643 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_029 IL_09061.6 | |
IL_5U4I_146 | 1/a/604:613, 1/a/627:634 | tSH-tHW-tHH-tHS Not in a motif group | homologous IL_6CZR_138 IL_57273.1 | |
IL_5U4I_147 | 1/a/654:655, 1/a/751:754 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4LFB_027 IL_50694.2 | |
IL_5U4I_148 | 1/a/658:659, 1/a/746:748 | Single stack bend Not in a motif group | homologous IL_5J7L_032 IL_76488.2 | |
IL_5U4I_149 | 1/a/662:666, 1/a/740:743 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_033 IL_71110.1 | |
IL_5U4I_150 | 1/a/673:678, 1/a/712:717 | No text annotation Not in a motif group | geometric IL_4LFB_030 IL_04668.1 | |
IL_5U4I_151 | 1/a/684:688, 1/a/699:706 | Kink-turn Not in a motif group | homologous IL_5J7L_035 IL_45067.2 | |
IL_5U4I_152 | 1/a/774:778, 1/a/804:805 | Left turn Not in a motif group | homologous IL_4LFB_032 IL_29346.1 | |
IL_5U4I_153 | 1/a/779:783, 1/a/799:803 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_037 IL_17136.1 | |
IL_5U4I_154 | 1/a/887:894, 1/a/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_5J7L_038 IL_24606.2 | |
IL_5U4I_155 | 1/a/922:923, 1/a/1393:1395 | Single bulged A Not in a motif group | homologous IL_4LFB_035 IL_37497.2 | |
IL_5U4I_156 | 1/a/925:927, 1/a/1390:1391 | Single bulged G Not in a motif group | homologous IL_5J7L_040 IL_00225.2 | |
IL_5U4I_157 | 1/a/933:935, 1/a/1380:1384 | Minor groove platform Not in a motif group | homologous IL_5J7L_041 IL_47078.1 | |
IL_5U4I_158 | 1/a/953:954, 1/a/1226:1228 | No text annotation Not in a motif group | homologous IL_6CZR_150 NA | |
IL_5U4I_159 | 1/a/993:997, 1/a/1044:1045 | Minor groove platform Not in a motif group | homologous IL_5J7L_043 IL_47078.1 | |
IL_5U4I_160 | 1/a/998:1000, 1/a/1040:1043 | No text annotation Not in a motif group | geometric IL_4P3T_002 IL_46796.1 | |
IL_5U4I_161 | 1/a/1027:1029, 1/a/1033:1034 | Single stack bend Not in a motif group | geometric IL_5J7L_044 IL_76488.2 | |
IL_5U4I_162 | 1/a/1048:1050, 1/a/1208:1209 | Single bulged U Not in a motif group | geometric IL_5J7L_046 IL_83039.13 | |
IL_5U4I_163 | 1/a/1050:1052, 1/a/1206:1208 | Stack and bulge Not in a motif group | geometric IL_2O3X_001 IL_82842.2 | |
IL_5U4I_164 | 1/a/1052:1056, 1/a/1204:1206 | Isolated cWS basepair Not in a motif group | homologous IL_4LFB_044 IL_76319.2 | |
IL_5U4I_165 | 1/a/1057:1058, 1/a/1199:1203 | Minor groove platform Not in a motif group | homologous IL_5J7L_048 IL_93353.1 | |
IL_5U4I_166 | 1/a/1060:1061, 1/a/1195:1197 | Single bulged A Not in a motif group | geometric IL_5J7L_049 IL_37497.2 | |
IL_5U4I_167 | 1/a/1061:1063, 1/a/1193:1195 | No text annotation Not in a motif group | homologous IL_5J7L_050 IL_95997.1 | |
IL_5U4I_168 | 1/a/1124:1128, 1/a/1144:1149 | No text annotation Not in a motif group | homologous IL_5J7L_051 IL_93211.1 | |
IL_5U4I_169 | 1/a/1129:1132, 1/a/1142:1143 | Minor groove platform Not in a motif group | homologous IL_5J7L_052 IL_15052.1 | |
IL_5U4I_170 | 1/a/1158:1161, 1/a/1175:1181 | No text annotation Not in a motif group | homologous IL_4LFB_050 IL_42032.1 | |
IL_5U4I_171 | 1/a/1247:1253, 1/a/1284:1290 | No text annotation Not in a motif group | homologous IL_5J7L_054 IL_09129.1 | |
IL_5U4I_172 | 1/a/1255:1258, 1/a/1277:1282 | No text annotation Not in a motif group | homologous IL_5J7L_055 IL_75461.4 | |
IL_5U4I_173 | 1/a/1259:1263, 1/a/1272:1276 | Triple sheared Not in a motif group | homologous IL_5J7L_056 IL_56467.8 | |
IL_5U4I_174 | 1/a/1303:1308, 1/a/1329:1334 | No text annotation Not in a motif group | homologous IL_5J7L_057 IL_19954.2 | |
IL_5U4I_175 | 1/a/1399:1401, 1/a/1501:1504 | No text annotation Not in a motif group | homologous IL_5J7L_058 IL_36143.3 | |
IL_5U4I_176 | 1/a/1401:1404, 1/a/1497:1501 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_99670.1 | |
IL_5U4I_177 | 1/a/1405:1409, 1/a/1491:1496 | No text annotation Not in a motif group | homologous IL_6CZR_167 NA | |
IL_5U4I_178 | 1/a/1412:1414, 1/a/1486:1488 | No text annotation Not in a motif group | homologous IL_5J7L_061 IL_95997.1 | |
IL_5U4I_179 | 1/a/1416:1419, 1/a/1481:1484 | Double sheared Not in a motif group | homologous IL_5J7L_062 IL_09705.9 | |
IL_5U4I_180 | 1/a/1430:1435, 1/a/1466:1470 | Triple sheared related Not in a motif group | homologous IL_5J7L_063 IL_64879.2 | |
IL_5U4I_181 | 1/a/1440:1442, 1/a/1460:1461 | Minor groove platform Not in a motif group | homologous IL_5J7L_064 IL_42622.2 | |
IL_5U4I_182 | 1/a/1445:1448, 1/a/1455:1457 | No text annotation Not in a motif group | homologous IL_5J7L_065 IL_02284.5 |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
IL_5U4I_001 | Triple sheared with non-canonical cWW | ||
IL_5U4I_002 | Single bulged A | ||
IL_5U4I_003 | Minor groove platform | ||
IL_5U4I_004 | No text annotation | ||
IL_5U4I_005 | Single stack bend | ||
IL_5U4I_006 | Single stack bend | ||
IL_5U4I_007 | Single stack bend | ||
IL_5U4I_008 | 8x7 Sarcin-Ricin; G-bulge | ||
IL_5U4I_009 | 7x6 Sarcin-Ricin; G-bulge | ||
IL_5U4I_010 | No text annotation | ||
IL_5U4I_011 | No text annotation | ||
IL_5U4I_012 | No text annotation | ||
IL_5U4I_013 | No text annotation | ||
IL_5U4I_014 | Double sheared | ||
IL_5U4I_015 | No text annotation | ||
IL_5U4I_016 | AAA cross-strand stack | ||
IL_5U4I_017 | No text annotation | ||
IL_5U4I_018 | No text annotation | ||
IL_5U4I_019 | Single bulged A | ||
IL_5U4I_020 | Single bulged G | ||
IL_5U4I_021 | Triple sheared | ||
IL_5U4I_022 | Major groove platform | ||
IL_5U4I_023 | Multiple bulged bases | ||
IL_5U4I_024 | No text annotation | ||
IL_5U4I_025 | Stack outside cWW | ||
IL_5U4I_026 | Single stack bend | ||
IL_5U4I_027 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
IL_5U4I_028 | Single bulged G | ||
IL_5U4I_029 | C-loop | ||
IL_5U4I_030 | Tandem non-canonical cWW pairs | ||
IL_5U4I_031 | Triple sheared | ||
IL_5U4I_032 | Single bulged A | ||
IL_5U4I_033 | Single bulged C | ||
IL_5U4I_034 | UAA/GAN | ||
IL_5U4I_035 | SSU/LSU pseudoknot | ||
IL_5U4I_036 | Single bulged U | ||
IL_5U4I_037 | No text annotation | ||
IL_5U4I_038 | No text annotation | ||
IL_5U4I_039 | Isolated non-canonical cWW with bulges | ||
IL_5U4I_040 | Tandem non-canonical cWW pairs | ||
IL_5U4I_041 | Kink-turn | ||
IL_5U4I_042 | No text annotation | ||
IL_5U4I_043 | No text annotation | ||
IL_5U4I_044 | No text annotation | ||
IL_5U4I_045 | No text annotation | ||
IL_5U4I_046 | Kink-turn | ||
IL_5U4I_047 | 8x7 Sarcin-Ricin; G-bulge | ||
IL_5U4I_048 | Major groove platform; stack outside cWW | ||
IL_5U4I_049 | C-loop | ||
IL_5U4I_050 | UAA/GAN | ||
IL_5U4I_051 | tSH-tHW-tHS | ||
IL_5U4I_052 | Single stack bend | ||
IL_5U4I_053 | No text annotation | ||
IL_5U4I_054 | UAA/GAN | ||
IL_5U4I_055 | Tandem non-canonical cWW pairs | ||
IL_5U4I_056 | tSH-tHW | ||
IL_5U4I_057 | Single bulged U | ||
IL_5U4I_058 | No text annotation | ||
IL_5U4I_059 | tSH-tHW-tHS | ||
IL_5U4I_060 | No text annotation | ||
IL_5U4I_061 | Single bulged A | ||
IL_5U4I_062 | UAA/GAN variation | ||
IL_5U4I_063 | No text annotation | ||
IL_5U4I_064 | Isolated tWW turn | ||
IL_5U4I_065 | Major groove platform; stack outside cWW | ||
IL_5U4I_066 | Intercalated tWH | ||
IL_5U4I_067 | tSH-tSH-tHH-tHS | ||
IL_5U4I_068 | No text annotation | ||
IL_5U4I_069 | No text annotation | ||
IL_5U4I_070 | Single bulged A | ||
IL_5U4I_071 | Kink-turn related | ||
IL_5U4I_072 | Major groove outside cWW, minor groove, intercalation pocket | ||
IL_5U4I_073 | Major groove outside cWW, minor groove, intercalation pocket | ||
IL_5U4I_074 | Major groove minor groove platform; mini C-loop | ||
IL_5U4I_075 | No text annotation | ||
IL_5U4I_076 | Multiple bulged bases | ||
IL_5U4I_077 | No text annotation | ||
IL_5U4I_078 | Major groove platform | ||
IL_5U4I_079 | No text annotation | ||
IL_5U4I_080 | No text annotation | ||
IL_5U4I_081 | No text annotation | ||
IL_5U4I_082 | Minor groove platform | ||
IL_5U4I_083 | Isolated tHS basepair with bulges | ||
IL_5U4I_084 | No text annotation | ||
IL_5U4I_085 | No text annotation | ||
IL_5U4I_086 | No text annotation | ||
IL_5U4I_087 | No text annotation | ||
IL_5U4I_088 | No text annotation | ||
IL_5U4I_089 | Kink-turn | ||
IL_5U4I_090 | Tandem non-canonical cWW pairs | ||
IL_5U4I_091 | Double sheared | ||
IL_5U4I_092 | No text annotation | ||
IL_5U4I_093 | No text annotation | ||
IL_5U4I_094 | Major groove platform with extra pair | ||
IL_5U4I_095 | Major groove minor groove platform with extra cWW | ||
IL_5U4I_096 | Triple sheared | ||
IL_5U4I_097 | No text annotation | ||
IL_5U4I_098 | Isolated non-canonical cWW with bulges | ||
IL_5U4I_099 | No text annotation | ||
IL_5U4I_100 | Minor groove platform with intercalation | ||
IL_5U4I_101 | No text annotation | ||
IL_5U4I_102 | Single bulged A | ||
IL_5U4I_103 | No text annotation | ||
IL_5U4I_104 | 7x6 Sarcin-Ricin; G-bulge | ||
IL_5U4I_105 | C-loop | ||
IL_5U4I_106 | No text annotation | ||
IL_5U4I_107 | Multiple bulged bases | ||
IL_5U4I_108 | UAA/GAN with extra cWW | ||
IL_5U4I_109 | No text annotation | ||
IL_5U4I_110 | Isolated non-canonical cWW with bulges | ||
IL_5U4I_111 | Multiple bulged bases with non-canonical cWW | ||
IL_5U4I_112 | No text annotation |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
J3_5U4I_015 | 1/B/10:16, 1/B/68:70, 1/B/106:110 | No text annotation Not in a motif group | homologous J3_5J7L_049 NA | |
J3_5U4I_016 | 1/a/46:47, 1/a/361:367, 1/a/393:395 | No text annotation Not in a motif group | ||
J3_5U4I_017 | 1/a/586:588, 1/a/651:654, 1/a/754:755 | No text annotation Not in a motif group | ||
J3_5U4I_018 | 1/a/672:673, 1/a/717:725, 1/a/732:734 | No text annotation Not in a motif group | homologous J3_5J7L_003 NA | |
J3_5U4I_019 | 1/a/826:829, 1/a/857:861, 1/a/868:874 | No text annotation Not in a motif group | homologous J3_5J7L_004 NA | |
J3_5U4I_020 | 1/a/936:939, 1/a/1344:1350, 1/a/1372:1379 | No text annotation Not in a motif group | homologous J3_4LFB_002 NA | |
J3_5U4I_021 | 1/a/943:946, 1/a/1235:1237, 1/a/1337:1340 | No text annotation Not in a motif group | ||
J3_5U4I_022 | 1/a/955:962, 1/a/973:984, 1/a/1221:1225 | No text annotation Not in a motif group | ||
J3_5U4I_023 | 1/a/990:993, 1/a/1045:1047, 1/a/1210:1215 | No text annotation Not in a motif group | ||
J3_5U4I_024 | 1/a/1063:1068, 1/a/1107:1113, 1/a/1187:1193 | No text annotation Not in a motif group | ||
J3_5U4I_025 | 1/a/1073:1074, 1/a/1083:1087, 1/a/1098:1102 | No text annotation Not in a motif group | homologous J3_5J7L_009 NA | |
J3_5U4I_026 | 1/a/1116:1118, 1/a/1155:1158, 1/a/1181:1184 | No text annotation Not in a motif group | ||
J3_5U4I_027 | 1/a/1237:1241, 1/a/1296:1303, 1/a/1334:1337 | No text annotation Not in a motif group |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
J3_5U4I_001 | No text annotation | ||
J3_5U4I_002 | No text annotation | ||
J3_5U4I_003 | No text annotation | ||
J3_5U4I_004 | No text annotation | ||
J3_5U4I_005 | No text annotation | ||
J3_5U4I_006 | No text annotation | ||
J3_5U4I_007 | No text annotation | ||
J3_5U4I_008 | No text annotation | ||
J3_5U4I_009 | No text annotation | ||
J3_5U4I_010 | No text annotation | ||
J3_5U4I_011 | No text annotation | ||
J3_5U4I_012 | No text annotation | ||
J3_5U4I_013 | No text annotation | ||
J3_5U4I_014 | No text annotation |
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