7PJT Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7PJT_001 | 1/A/59:68 | No text annotation Not in a motif group | homologous HL_5J7L_134 HL_18177.1 | |
| HL_7PJT_002 | 1/A/87:95 | No text annotation Not in a motif group | homologous HL_5J7L_135 HL_84193.1 | |
| HL_7PJT_003 | 1/A/123:128 | No text annotation Not in a motif group | homologous HL_4WF9_003 HL_75407.1 | |
| HL_7PJT_004 | 1/A/137:142 | Other HL Not in a motif group | geometric HL_2NUE_001 HL_07518.1 | |
| HL_7PJT_005 | 1/A/158:168 | No text annotation Not in a motif group | homologous HL_5J7L_138 HL_81820.1 | |
| HL_7PJT_006 | 1/A/194:201 | No text annotation Not in a motif group | geometric HL_4WF9_006 HL_06192.2 | |
| HL_7PJT_007 | 1/A/225:230 | No text annotation Not in a motif group | homologous HL_5J7L_140 HL_27930.1 | |
| HL_7PJT_008 | 1/A/246:252 | No text annotation Not in a motif group | homologous HL_7RQB_008 HL_67216.7 | |
| HL_7PJT_009 | 1/A/305:312 | T-loop with 1 bulged base Not in a motif group | homologous HL_5J7L_142 HL_89380.2 | |
| HL_7PJT_010 | 1/A/327:335 | No text annotation Not in a motif group | homologous HL_5J7L_144 HL_08002.8 | |
| HL_7PJT_011 | 1/A/382:392 | No text annotation Not in a motif group | homologous HL_5J7L_145 HL_91503.4 | |
| HL_7PJT_012 | 1/A/410:417 | No text annotation Not in a motif group | homologous HL_7RQB_014 HL_96598.1 | |
| HL_7PJT_013 | 1/A/462:467 | No text annotation Not in a motif group | homologous HL_7RQB_015 HL_42097.1 | |
| HL_7PJT_014 | 1/A/487:493 | No text annotation Not in a motif group | homologous HL_7RQB_016 HL_42097.1 | |
| HL_7PJT_015 | 1/A/545:548 | No text annotation Not in a motif group | homologous HL_7RQB_017 NA | |
| HL_7PJT_016 | 1/A/564:577 | No text annotation Not in a motif group | ||
| HL_7PJT_017 | 1/A/611:617 | No text annotation Not in a motif group | homologous HL_5J7L_151 HL_90617.2 | |
| HL_7PJT_018 | 1/A/629:634 | GNRA Not in a motif group | homologous HL_5J7L_152 HL_42097.1 | |
| HL_7PJT_019 | 1/A/641:647 | No text annotation Not in a motif group | homologous HL_5J7L_153 HL_77805.2 | |
| HL_7PJT_020 | 1/A/712:719 | No text annotation Not in a motif group | homologous HL_5J7L_154 HL_84085.2 | |
| HL_7PJT_021 | 1/A/744:753 | No text annotation Not in a motif group | homologous HL_5J7L_155 NA | |
| HL_7PJT_022 | 1/A/779:785 | No text annotation Not in a motif group | homologous HL_7RQB_024 HL_74322.1 | |
| HL_7PJT_023 | 1/A/825:832 | No text annotation Not in a motif group | geometric HL_361D_002 HL_90617.2 | |
| HL_7PJT_024 | 1/A/881:895 | No text annotation Not in a motif group | ||
| HL_7PJT_025 | 1/A/954:963 | No text annotation Not in a motif group | homologous HL_5J7L_159 NA | |
| HL_7PJT_026 | 1/A/978:985 | No text annotation Not in a motif group | homologous HL_7A0S_027 HL_64430.2 | |
| HL_7PJT_027 | 1/A/1062:1076 | No text annotation Not in a motif group | ||
| HL_7PJT_028 | 1/A/1092:1099 | No text annotation Not in a motif group | ||
| HL_7PJT_029 | 1/A/1169:1180 | No text annotation Not in a motif group | ||
| HL_7PJT_030 | 1/A/1221:1228 | No text annotation Not in a motif group | geometric HL_2Y9H_005 HL_47100.1 | |
| HL_7PJT_031 | 1/A/1281:1289 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5J7L_165 HL_89380.2 | |
| HL_7PJT_032 | 1/A/1324:1330 | No text annotation Not in a motif group | homologous HL_5J7L_166 HL_46680.1 | |
| HL_7PJT_033 | 1/A/1363:1368 | Other HL Not in a motif group | homologous HL_5J7L_167 HL_87030.2 | |
| HL_7PJT_034 | 1/A/1389:1398 | No text annotation Not in a motif group | homologous HL_5J7L_168 HL_69023.2 | |
| HL_7PJT_035 | 1/A/1451:1459 | No text annotation Not in a motif group | homologous HL_5J7L_169 HL_53837.1 | |
| HL_7PJT_036 | 1/A/1492:1498 | No text annotation Not in a motif group | homologous HL_5J7L_170 HL_46680.1 | |
| HL_7PJT_037 | 1/A/1533:1538 | No text annotation Not in a motif group | ||
| HL_7PJT_038 | 1/A/1565:1568 | No text annotation Not in a motif group | homologous HL_5J7L_172 HL_38927.2 | |
| HL_7PJT_039 | 1/A/1612:1619 | No text annotation Not in a motif group | ||
| HL_7PJT_040 | 1/A/1630:1636 | GNRA with one bulged base Not in a motif group | homologous HL_5J7L_174 HL_42097.1 | |
| HL_7PJT_041 | 1/A/1691:1696 | UNCG Not in a motif group | homologous HL_4WF9_040 HL_03562.2 | |
| HL_7PJT_042 | 1/A/1728:1731 | No text annotation Not in a motif group | geometric HL_6U8D_003 HL_89098.1 | |
| HL_7PJT_043 | 1/A/1752:1756 | No text annotation Not in a motif group | homologous HL_5J7L_177 HL_76539.2 | |
| HL_7PJT_044 | 1/A/1777:1787 | No text annotation Not in a motif group | homologous HL_5J7L_178 HL_43613.5 | |
| HL_7PJT_045 | 1/A/1804:1813 | No text annotation Not in a motif group | ||
| HL_7PJT_046 | 1/A/1868:1873 | GNRA Not in a motif group | geometric HL_4QLM_001 HL_30784.2 | |
| HL_7PJT_048 | 1/A/1949:1957 | No text annotation Not in a motif group | homologous HL_5J7L_182 HL_51824.1 | |
| HL_7PJT_049 | 1/A/2027:2036 | No text annotation Not in a motif group | ||
| HL_7PJT_050 | 1/A/2143:2148 | No text annotation Not in a motif group | ||
| HL_7PJT_051 | 1/A/2209:2215 | No text annotation Not in a motif group | homologous HL_5J7L_185 HL_16845.6 | |
| HL_7PJT_052 | 1/A/2248:2256 | No text annotation Not in a motif group | homologous HL_5J7L_186 NA | |
| HL_7PJT_053 | 1/A/2264:2276 | No text annotation Not in a motif group | homologous HL_7RQB_054 HL_19870.6 | |
| HL_7PJT_054 | 1/A/2303:2313 | No text annotation Not in a motif group | homologous HL_7RQB_055 HL_11805.3 | |
| HL_7PJT_055 | 1/A/2324:2331 | No text annotation Not in a motif group | homologous HL_5J7L_189 HL_12078.2 | |
| HL_7PJT_056 | 1/A/2356:2361 | Other HL Not in a motif group | homologous HL_5J7L_190 HL_87030.2 | |
| HL_7PJT_057 | 1/A/2374:2379 | GNRA Not in a motif group | homologous HL_5J7L_191 HL_42097.1 | |
| HL_7PJT_058 | 1/A/2404:2413 | No text annotation Not in a motif group | homologous HL_5J7L_192 HL_30784.2 | |
| HL_7PJT_059 | 1/A/2471:2479 | No text annotation Not in a motif group | homologous HL_4WF9_056 HL_06192.2 | |
| HL_7PJT_060 | 1/A/2527:2536 | No text annotation Not in a motif group | geometric HL_5J7L_151 HL_90617.2 | |
| HL_7PJT_061 | 1/A/2551:2557 | No text annotation Not in a motif group | homologous HL_7A0S_061 HL_43656.2 | |
| HL_7PJT_062 | 1/A/2594:2599 | No text annotation Not in a motif group | homologous HL_7RQB_063 HL_42097.1 | |
| HL_7PJT_063 | 1/A/2658:2663 | No text annotation Not in a motif group | geometric HL_5J7L_177 HL_76539.2 | |
| HL_7PJT_064 | 1/A/2701:2706 | Ribsomal LSU H95 Not in a motif group | homologous HL_5J7L_198 HL_46680.1 | |
| HL_7PJT_065 | 1/A/2745:2759 | No text annotation Not in a motif group | homologous HL_5J7L_199 HL_56677.7 | |
| HL_7PJT_066 | 1/A/2796:2799 | No text annotation Not in a motif group | ||
| HL_7PJT_067 | 1/A/2819:2827 | No text annotation Not in a motif group | homologous HL_5J7L_201 HL_27930.1 | |
| HL_7PJT_068 | 1/A/2856:2861 | No text annotation Not in a motif group | homologous HL_7A0S_068 HL_42097.1 | |
| HL_7PJT_069 | 1/B/38:44 | No text annotation Not in a motif group | homologous HL_5J7L_203 HL_87939.1 | |
| HL_7PJT_070 | 1/B/86:90 | No text annotation Not in a motif group | homologous HL_5J7L_204 HL_38927.2 | |
| HL_7PJT_071 | 1/a/12:22 | No text annotation Not in a motif group | homologous HL_4LFB_001 HL_89881.2 | |
| HL_7PJT_072 | 1/a/78:91 | No text annotation Not in a motif group | homologous HL_6CZR_073 NA | |
| HL_7PJT_073 | 1/a/158:163 | GNRA Not in a motif group | homologous HL_5J7L_003 HL_42097.1 | |
| HL_7PJT_074 | 1/a/186:191 | GNRA Not in a motif group | homologous HL_5J7L_004 HL_42097.1 | |
| HL_7PJT_075 | 1/a/207:212 | No text annotation Not in a motif group | geometric HL_2Y8W_001 HL_01057.1 | |
| HL_7PJT_076 | 1/a/259:267 | No text annotation Not in a motif group | homologous HL_5J7L_006 HL_69023.2 | |
| HL_7PJT_077 | 1/a/296:301 | GNRA Not in a motif group | homologous HL_5J7L_007 HL_42097.1 | |
| HL_7PJT_078 | 1/a/322:332 | No text annotation Not in a motif group | ||
| HL_7PJT_079 | 1/a/342:347 | No text annotation Not in a motif group | homologous HL_6CZR_080 HL_03562.2 | |
| HL_7PJT_080 | 1/a/379:384 | GNRA Not in a motif group | homologous HL_5J7L_010 HL_42097.1 | |
| HL_7PJT_081 | 1/a/419:424 | UNCG Not in a motif group | homologous HL_4LFB_011 HL_03562.2 | |
| HL_7PJT_082 | 1/a/462:470 | No text annotation Not in a motif group | homologous HL_5J7L_012 HL_84085.2 | |
| HL_7PJT_083 | 1/a/521:528 | No text annotation Not in a motif group | homologous HL_5J7L_013 NA | |
| HL_7PJT_084 | 1/a/617:623 | No text annotation Not in a motif group | homologous HL_4LFB_014 HL_26881.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7PJT_047 | No text annotation | ||
| HL_7PJT_085 | No text annotation | ||
| HL_7PJT_086 | Other HL | ||
| HL_7PJT_087 | No text annotation | ||
| HL_7PJT_088 | No text annotation | ||
| HL_7PJT_089 | GNRA | ||
| HL_7PJT_090 | GNRA | ||
| HL_7PJT_091 | No text annotation | ||
| HL_7PJT_092 | GNRA | ||
| HL_7PJT_093 | GNRA | ||
| HL_7PJT_094 | No text annotation | ||
| HL_7PJT_095 | No text annotation | ||
| HL_7PJT_096 | GNRA | ||
| HL_7PJT_097 | GNRA | ||
| HL_7PJT_098 | No text annotation | ||
| HL_7PJT_099 | No text annotation | ||
| HL_7PJT_100 | UNCG | ||
| HL_7PJT_101 | No text annotation | ||
| HL_7PJT_102 | No text annotation | ||
| HL_7PJT_103 | tRNA anticodon loop | ||
| HL_7PJT_104 | No text annotation | ||
| HL_7PJT_105 | No text annotation | ||
| HL_7PJT_106 | No text annotation | ||
| HL_7PJT_107 | T-loop with 2 stacked bulged bases |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7PJT_001 | 1/A/24:30, 1/A/510:516 | Triple sheared with non-canonical cWW Not in a motif group | geometric IL_5J7L_245 IL_66414.6 | |
| IL_7PJT_002 | 1/A/36:37, 1/A/442:444 | Single bulged A Not in a motif group | homologous IL_7RQB_002 IL_37497.2 | |
| IL_7PJT_003 | 1/A/43:44, 1/A/434:436 | Minor groove platform Not in a motif group | homologous IL_5J7L_247 IL_42622.2 | |
| IL_7PJT_004 | 1/A/81:85, 1/A/97:105 | No text annotation Not in a motif group | homologous IL_5J7L_248 IL_93699.1 | |
| IL_7PJT_005 | 1/A/188:194, 1/A/201:208 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7A0S_006 IL_04346.7 | |
| IL_7PJT_006 | 1/A/239:245, 1/A/253:258 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_251 IL_76042.2 | |
| IL_7PJT_007 | 1/A/269:271, 1/A/366:370 | No text annotation Not in a motif group | homologous IL_5J7L_252 IL_47972.1 | |
| IL_7PJT_008 | 1/A/274:281, 1/A/359:363 | No text annotation Not in a motif group | homologous IL_5J7L_253 IL_77870.1 | |
| IL_7PJT_009 | 1/A/293:295, 1/A/343:347 | No text annotation Not in a motif group | homologous IL_5J7L_254 IL_69440.1 | |
| IL_7PJT_010 | 1/A/481:484, 1/A/496:509 | No text annotation Not in a motif group | geometric IL_5J7L_255 IL_60992.6 | |
| IL_7PJT_011 | 1/A/536:540, 1/A/553:557 | Triple sheared Not in a motif group | geometric IL_7A0S_056 IL_41507.1 | |
| IL_7PJT_012 | 1/A/605:610, 1/A/618:623 | No text annotation Not in a motif group | ||
| IL_7PJT_013 | 1/A/672:674, 1/A/806:808 | No text annotation Not in a motif group | geometric IL_7A0S_014 IL_95997.1 | |
| IL_7PJT_014 | 1/A/674:678, 1/A/799:806 | No text annotation Not in a motif group | homologous IL_7RQB_018 IL_17470.6 | |
| IL_7PJT_015 | 1/A/697:698, 1/A/763:765 | Single bulged A Not in a motif group | geometric IL_7A0S_016 IL_37497.2 | |
| IL_7PJT_016 | 1/A/702:703, 1/A/728:730 | Single bulged G Not in a motif group | geometric IL_5TBW_029 IL_00225.2 | |
| IL_7PJT_017 | 1/A/703:707, 1/A/724:728 | Triple sheared Not in a motif group | homologous IL_5J7L_263 IL_56467.8 | |
| IL_7PJT_018 | 1/A/738:740, 1/A/757:758 | Major groove platform Not in a motif group | homologous IL_5J7L_264 IL_27635.1 | |
| IL_7PJT_019 | 1/A/775:777, 1/A/787:791 | Multiple bulged bases Not in a motif group | geometric IL_7A0S_021 IL_90991.6 | |
| IL_7PJT_020 | 1/A/844:847, 1/A/933:934 | Other IL Not in a motif group | homologous IL_5J7L_267 IL_92001.1 | |
| IL_7PJT_021 | 1/A/847:848, 1/A/930:933 | Stack outside cWW Not in a motif group | geometric IL_5J7L_268 IL_37629.1 | |
| IL_7PJT_022 | 1/A/849:851, 1/A/926:929 | No text annotation Not in a motif group | geometric IL_4V9F_053 IL_46796.1 | |
| IL_7PJT_023 | 1/A/856:862, 1/A/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | homologous IL_5J7L_270 IL_93830.3 | |
| IL_7PJT_024 | 1/A/862:863, 1/A/913:915 | Single bulged G Not in a motif group | geometric IL_5J7L_271 IL_00225.2 | |
| IL_7PJT_025 | 1/A/864:868, 1/A/909:912 | C-loop Not in a motif group | homologous IL_5J7L_272 IL_63596.6 | |
| IL_7PJT_026 | 1/A/870:872, 1/A/905:907 | No text annotation Not in a motif group | homologous IL_5J7L_273 IL_95997.1 | |
| IL_7PJT_027 | 1/A/875:879, 1/A/898:902 | Triple sheared Not in a motif group | homologous IL_5J7L_274 IL_56467.8 | |
| IL_7PJT_028 | 1/A/880:881, 1/A/895:897 | Single bulged A Not in a motif group | homologous IL_7RQB_033 IL_37497.2 | |
| IL_7PJT_029 | 1/A/994:996, 1/A/1159:1160 | Single bulged C Not in a motif group | homologous IL_7A0S_032 IL_61258.12 | |
| IL_7PJT_030 | 1/A/998:1002, 1/A/1153:1157 | UAA/GAN Not in a motif group | homologous IL_5J7L_277 IL_89002.2 | |
| IL_7PJT_031 | 1/A/1004:1011, 1/A/1150:1151 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5J7L_278 IL_15861.7 | |
| IL_7PJT_032 | 1/A/1011:1013, 1/A/1149:1150 | Single bulged U Not in a motif group | geometric IL_7RQB_038 IL_83039.13 | |
| IL_7PJT_033 | 1/A/1018:1024, 1/A/1140:1144 | No text annotation Not in a motif group | geometric IL_4WF9_039 IL_57188.3 | |
| IL_7PJT_034 | 1/A/1024:1030, 1/A/1124:1140 | No text annotation Not in a motif group | ||
| IL_7PJT_035 | 1/A/1031:1034, 1/A/1121:1123 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_7RQB_041 IL_82068.2 | |
| IL_7PJT_036 | 1/A/1038:1041, 1/A/1114:1117 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_283 IL_30621.2 | |
| IL_7PJT_037 | 1/A/1043:1051, 1/A/1108:1112 | Kink-turn Not in a motif group | homologous IL_5J7L_284 IL_90538.4 | |
| IL_7PJT_038 | 1/A/1196:1198, 1/A/1247:1250 | Isolated cWS basepair Not in a motif group | homologous IL_7A0S_041 IL_52767.2 | |
| IL_7PJT_039 | 1/A/1202:1206, 1/A/1240:1243 | No text annotation Not in a motif group | homologous IL_5J7L_287 IL_91920.1 | |
| IL_7PJT_040 | 1/A/1208:1215, 1/A/1234:1238 | Kink-turn Not in a motif group | homologous IL_4WF9_046 IL_70923.2 | |
| IL_7PJT_041 | 1/A/1262:1269, 1/A/2011:2017 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_289 IL_04346.7 | |
| IL_7PJT_042 | 1/A/1310:1313, 1/A/1603:1604 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4WF9_049 IL_50694.2 | |
| IL_7PJT_043 | 1/A/1319:1323, 1/A/1331:1333 | C-loop Not in a motif group | homologous IL_5J7L_291 IL_63596.6 | |
| IL_7PJT_044 | 1/A/1351:1355, 1/A/1376:1380 | No text annotation Not in a motif group | ||
| IL_7PJT_045 | 1/A/1357:1361, 1/A/1370:1374 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_293 IL_17136.1 | |
| IL_7PJT_046 | 1/A/1415:1416, 1/A/1582:1587 | No text annotation Not in a motif group | homologous IL_5J7L_294 IL_90348.1 | |
| IL_7PJT_047 | 1/A/1417:1421, 1/A/1577:1581 | UAA/GAN Not in a motif group | homologous IL_7RQB_055 IL_89002.2 | |
| IL_7PJT_048 | 1/A/1432:1435, 1/A/1557:1561 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_296 IL_55178.1 | |
| IL_7PJT_049 | 1/A/1437:1440, 1/A/1551:1555 | tSH-tHW Not in a motif group | homologous IL_5J7L_297 IL_04059.1 | |
| IL_7PJT_050 | 1/A/1450:1451, 1/A/1459:1461 | Single bulged U Not in a motif group | geometric IL_3TZR_002 IL_83039.13 | |
| IL_7PJT_051 | 1/A/1468:1471, 1/A/1520:1524 | No text annotation Not in a motif group | homologous IL_5J7L_299 IL_68574.2 | |
| IL_7PJT_052 | 1/A/1474:1478, 1/A/1513:1517 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_300 IL_38862.1 | |
| IL_7PJT_053 | 1/A/1481:1482, 1/A/1507:1510 | No text annotation Not in a motif group | homologous IL_5J7L_301 IL_67474.4 | |
| IL_7PJT_054 | 1/A/1489:1491, 1/A/1499:1500 | Single bulged A Not in a motif group | homologous IL_5J7L_302 IL_37497.2 | |
| IL_7PJT_055 | 1/A/1526:1529, 1/A/1542:1546 | UAA/GAN variation Not in a motif group | homologous IL_5J7L_303 IL_07235.1 | |
| IL_7PJT_056 | 1/A/1651:1656, 1/A/2004:2006 | No text annotation Not in a motif group | homologous IL_5J7L_304 IL_12566.2 | |
| IL_7PJT_057 | 1/A/1663:1665, 1/A/1995:1997 | Isolated tWW turn Not in a motif group | homologous IL_4WF9_063 IL_54997.7 | |
| IL_7PJT_058 | 1/A/1666:1669, 1/A/1993:1994 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7A0S_061 IL_50694.2 | |
| IL_7PJT_059 | 1/A/1686:1691, 1/A/1696:1702 | tSH-tSH-tHH-tHS Not in a motif group | geometric IL_7A0S_063 IL_65969.2 | |
| IL_7PJT_060 | 1/A/1712:1718, 1/A/1742:1746 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_309 IL_88269.3 | |
| IL_7PJT_061 | 1/A/1720:1725, 1/A/1735:1740 | Triple sheared with non-canonical cWW Not in a motif group | geometric IL_7A0S_018 IL_86929.2 | |
| IL_7PJT_062 | 1/A/1727:1728, 1/A/1731:1733 | Single bulged C Not in a motif group | homologous IL_5J7L_311 IL_61258.12 | |
| IL_7PJT_063 | 1/A/1770:1771, 1/A/1980:1982 | Single bulged A Not in a motif group | homologous IL_5J7L_312 IL_37497.2 | |
| IL_7PJT_064 | 1/A/1798:1804, 1/A/1813:1821 | Kink-turn related Not in a motif group | homologous IL_7RQB_070 IL_17069.3 | |
| IL_7PJT_065 | 1/A/1837:1840, 1/A/1902:1903 | No text annotation Not in a motif group | ||
| IL_7PJT_066 | 1/A/1841:1842, 1/A/1898:1901 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_315 IL_16396.2 | |
| IL_7PJT_067 | 1/A/1846:1849, 1/A/1893:1894 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_316 IL_09061.6 | |
| IL_7PJT_068 | 1/A/1864:1867, 1/A/1874:1878 | UAA/GAN related Not in a motif group | homologous IL_5J7L_317 IL_77691.1 | |
| IL_7PJT_069 | 1/A/1907:1909, 1/A/1922:1925 | No text annotation Not in a motif group | ||
| IL_7PJT_070 | 1/A/1933:1934, 1/A/1964:1967 | Multiple bulged bases Not in a motif group | geometric IL_5J7L_318 IL_59677.2 | |
| IL_7PJT_071 | 1/A/1934:1945, 1/A/1961:1964 | No text annotation Not in a motif group | homologous IL_7A0S_072 IL_81589.2 | |
| IL_7PJT_072 | 1/A/2050:2052, 1/A/2617:2618 | Major groove platform Not in a motif group | homologous IL_5J7L_320 IL_27635.1 | |
| IL_7PJT_073 | 1/A/2054:2056, 1/A/2612:2615 | No text annotation Not in a motif group | homologous IL_5J7L_321 IL_54678.5 | |
| IL_7PJT_074 | 1/A/2064:2066, 1/A/2444:2446 | No text annotation Not in a motif group | homologous IL_5J7L_322 NA | |
| IL_7PJT_075 | 1/A/2067:2070, 1/A/2441:2443 | No text annotation Not in a motif group | homologous IL_5J7L_323 NA | |
| IL_7PJT_076 | 1/A/2070:2072, 1/A/2437:2441 | No text annotation Not in a motif group | ||
| IL_7PJT_077 | 1/A/2081:2083, 1/A/2236:2239 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_5J7L_325 IL_38958.7 | |
| IL_7PJT_078 | 1/A/2085:2087, 1/A/2232:2234 | No text annotation Not in a motif group | homologous IL_5J7L_326 IL_95997.1 | |
| IL_7PJT_079 | 1/A/2101:2105, 1/A/2184:2188 | No text annotation Not in a motif group | ||
| IL_7PJT_080 | 1/A/2106:2143, 1/A/2148:2183 | No text annotation Not in a motif group | ||
| IL_7PJT_081 | 1/A/2202:2204, 1/A/2220:2221 | Single bulged U Not in a motif group | homologous IL_5J7L_331 IL_83039.13 | |
| IL_7PJT_082 | 1/A/2350:2353, 1/A/2364:2367 | Double sheared Not in a motif group | homologous IL_4WF9_087 IL_09705.9 | |
| IL_7PJT_083 | 1/A/2401:2403, 1/A/2414:2415 | Single bulged U Not in a motif group | homologous IL_4WF9_088 IL_83039.13 | |
| IL_7PJT_084 | 1/A/2453:2455, 1/A/2496:2500 | No text annotation Not in a motif group | homologous IL_5J7L_335 NA | |
| IL_7PJT_085 | 1/A/2456:2461, 1/A/2489:2495 | No text annotation Not in a motif group | ||
| IL_7PJT_086 | 1/A/2466:2470, 1/A/2480:2484 | Triple sheared Not in a motif group | homologous IL_5J7L_338 IL_56467.8 | |
| IL_7PJT_087 | 1/A/2507:2509, 1/A/2579:2582 | No text annotation Not in a motif group | homologous IL_5J7L_339 NA | |
| IL_7PJT_088 | 1/A/2510:2512, 1/A/2574:2578 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5J7L_340 IL_90933.2 | |
| IL_7PJT_089 | 1/A/2512:2513, 1/A/2571:2574 | No text annotation Not in a motif group | geometric IL_5J7L_341 IL_71530.2 | |
| IL_7PJT_090 | 1/A/2522:2523, 1/A/2540:2543 | Minor groove platform with intercalation Not in a motif group | homologous IL_5J7L_342 IL_95601.3 | |
| IL_7PJT_091 | 1/A/2588:2591, 1/A/2603:2606 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_361D_001 IL_30621.2 | |
| IL_7PJT_092 | 1/A/2591:2592, 1/A/2601:2603 | Single bulged A Not in a motif group | homologous IL_7RQB_101 IL_37497.2 | |
| IL_7PJT_093 | 1/A/2636:2640, 1/A/2774:2782 | tSH-tHS-tHW Not in a motif group | homologous IL_7RQB_102 IL_04638.1 | |
| IL_7PJT_094 | 1/A/2652:2658, 1/A/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | homologous IL_5J7L_346 IL_16458.1 | |
| IL_7PJT_095 | 1/A/2680:2684, 1/A/2725:2727 | C-loop Not in a motif group | homologous IL_5J7L_347 IL_63596.6 | |
| IL_7PJT_096 | 1/A/2686:2691, 1/A/2718:2723 | No text annotation Not in a motif group | ||
| IL_7PJT_097 | 1/A/2695:2696, 1/A/2711:2714 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_349 IL_71530.2 | |
| IL_7PJT_098 | 1/A/2737:2742, 1/A/2762:2767 | UAA/GAN with extra cWW Not in a motif group | homologous IL_5J7L_350 IL_49767.5 | |
| IL_7PJT_099 | 1/A/2795:2796, 1/A/2799:2801 | Single bulged A Not in a motif group | geometric IL_7RQB_059 IL_37497.2 | |
| IL_7PJT_100 | 1/A/2806:2811, 1/A/2889:2892 | No text annotation Not in a motif group | ||
| IL_7PJT_101 | 1/A/2838:2839, 1/A/2878:2880 | Major groove intercalation Not in a motif group | homologous IL_4WF9_106 IL_16396.2 | |
| IL_7PJT_102 | 1/A/2843:2846, 1/A/2870:2874 | Multiple bulged bases with non-canonical cWW Not in a motif group | homologous IL_5J7L_353 IL_58764.3 | |
| IL_7PJT_103 | 1/A/2847:2853, 1/A/2864:2869 | No text annotation Not in a motif group | ||
| IL_7PJT_104 | 1/B/17:18, 1/B/65:67 | Major groove intercalation Not in a motif group | homologous IL_4V9F_101 IL_37497.2 | |
| IL_7PJT_105 | 1/B/23:28, 1/B/56:60 | No text annotation Not in a motif group | homologous IL_7RQB_112 NA | |
| IL_7PJT_106 | 1/B/30:31, 1/B/51:54 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_357 IL_09061.6 | |
| IL_7PJT_107 | 1/B/34:38, 1/B/44:48 | Symmetric double minor groove platform Not in a motif group | geometric IL_5J7L_358 IL_58103.6 | |
| IL_7PJT_108 | 1/B/71:79, 1/B/97:105 | Bacterial 5S Loop E Not in a motif group | homologous IL_7RQB_115 IL_56455.3 | |
| IL_7PJT_109 | 1/a/30:32, 1/a/552:553 | Single bulged G Not in a motif group | homologous IL_5J7L_001 IL_00225.2 | |
| IL_7PJT_110 | 1/a/44:45, 1/a/396:398 | Single bulged A Not in a motif group | homologous IL_4LFB_002 IL_37497.2 | |
| IL_7PJT_111 | 1/a/47:52, 1/a/359:361 | Decoding loop related Not in a motif group | geometric IL_2O3X_003 IL_82842.2 | |
| IL_7PJT_112 | 1/a/54:56, 1/a/356:357 | Minor groove platform Not in a motif group | homologous IL_4LFB_004 IL_93353.1 | |
| IL_7PJT_113 | 1/a/63:66, 1/a/103:104 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_005 IL_76389.1 | |
| IL_7PJT_114 | 1/a/67:69, 1/a/99:102 | Minor groove platform with extra cWW Not in a motif group | homologous IL_5J7L_006 IL_65006.1 | |
| IL_7PJT_115 | 1/a/70:73, 1/a/97:98 | Minor groove platform Not in a motif group | homologous IL_5J7L_007 IL_15052.1 | |
| IL_7PJT_116 | 1/a/75:77, 1/a/92:95 | Single bulged G, near cWW Not in a motif group | homologous IL_5J7L_008 IL_82068.2 | |
| IL_7PJT_117 | 1/a/128:131, 1/a/231:233 | No text annotation Not in a motif group | ||
| IL_7PJT_118 | 1/a/132:136, 1/a/227:230 | No text annotation Not in a motif group | homologous IL_4LFB_008 IL_58764.3 | |
| IL_7PJT_119 | 1/a/147:153, 1/a/168:175 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_5J7L_012 IL_80604.2 | |
| IL_7PJT_120 | 1/a/203:206, 1/a/213:214 | No text annotation Not in a motif group | ||
| IL_7PJT_121 | 1/a/242:247, 1/a/277:284 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_5J7L_014 IL_45067.2 | |
| IL_7PJT_122 | 1/a/248:252, 1/a/274:276 | No text annotation Not in a motif group | ||
| IL_7PJT_123 | 1/a/292:294, 1/a/303:308 | No text annotation Not in a motif group | ||
| IL_7PJT_124 | 1/a/320:322, 1/a/332:333 | Single stack bend Not in a motif group | geometric IL_4C7O_002 IL_76488.2 | |
| IL_7PJT_125 | 1/a/367:369, 1/a/392:393 | Single bulged U Not in a motif group | geometric IL_5J7L_017 IL_83039.13 | |
| IL_7PJT_126 | 1/a/371:375, 1/a/389:390 | C-loop Not in a motif group | geometric IL_6CZR_127 IL_75255.1 | |
| IL_7PJT_127 | 1/a/375:377, 1/a/386:389 | Single bulged G, near cWW Not in a motif group | homologous IL_6CZR_128 IL_52767.2 | |
| IL_7PJT_128 | 1/a/409:416, 1/a/427:433 | No text annotation Not in a motif group | homologous IL_5J7L_020 IL_28026.1 | |
| IL_7PJT_129 | 1/a/440:442, 1/a/492:497 | No text annotation Not in a motif group | homologous IL_5J7L_021 IL_22248.1 | |
| IL_7PJT_130 | 1/a/446:450, 1/a/483:488 | No text annotation Not in a motif group | ||
| IL_7PJT_131 | 1/a/450:455, 1/a/477:483 | No text annotation Not in a motif group | geometric IL_5J7L_023 IL_70801.1 | |
| IL_7PJT_132 | 1/a/455:457, 1/a/475:477 | No text annotation Not in a motif group | geometric IL_4E48_003 IL_95997.1 | |
| IL_7PJT_133 | 1/a/504:511, 1/a/540:541 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5J7L_024 IL_15861.7 | |
| IL_7PJT_134 | 1/a/515:521, 1/a/528:536 | No text annotation Not in a motif group | ||
| IL_7PJT_135 | 1/a/569:575, 1/a/880:881 | No text annotation Not in a motif group | homologous IL_4LFB_022 IL_69996.1 | |
| IL_7PJT_136 | 1/a/580:585, 1/a/756:761 | No text annotation Not in a motif group | ||
| IL_7PJT_137 | 1/a/593:596, 1/a/644:646 | Major groove platform with extra pair Not in a motif group | geometric IL_5TBW_091 IL_63450.2 | |
| IL_7PJT_138 | 1/a/597:598, 1/a/640:643 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4LFB_025 IL_09061.6 | |
| IL_7PJT_139 | 1/a/605:612, 1/a/628:633 | No text annotation Not in a motif group | homologous IL_5J7L_030 IL_78349.1 | |
| IL_7PJT_140 | 1/a/654:655, 1/a/751:754 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_1G1X_004 IL_50694.2 | |
| IL_7PJT_141 | 1/a/659:660, 1/a/745:747 | Single stack bend Not in a motif group | homologous IL_5J7L_032 IL_76488.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7PJT_142 | No text annotation | ||
| IL_7PJT_143 | No text annotation | ||
| IL_7PJT_144 | Kink-turn | ||
| IL_7PJT_145 | Left turn | ||
| IL_7PJT_146 | tSH-tHW-tHS | ||
| IL_7PJT_147 | 10x8 Sarcin-Ricin; G-bulge | ||
| IL_7PJT_148 | Single bulged A | ||
| IL_7PJT_149 | Single bulged G | ||
| IL_7PJT_150 | Minor groove platform | ||
| IL_7PJT_151 | Minor groove platform | ||
| IL_7PJT_152 | Minor groove platform | ||
| IL_7PJT_153 | Single stack bend | ||
| IL_7PJT_154 | No text annotation | ||
| IL_7PJT_155 | Single bulged U | ||
| IL_7PJT_156 | No text annotation | ||
| IL_7PJT_157 | Minor groove platform | ||
| IL_7PJT_158 | Single bulged U | ||
| IL_7PJT_159 | No text annotation | ||
| IL_7PJT_160 | No text annotation | ||
| IL_7PJT_161 | No text annotation | ||
| IL_7PJT_162 | No text annotation | ||
| IL_7PJT_163 | No text annotation | ||
| IL_7PJT_164 | No text annotation | ||
| IL_7PJT_165 | Triple sheared | ||
| IL_7PJT_166 | No text annotation | ||
| IL_7PJT_167 | No text annotation | ||
| IL_7PJT_168 | No text annotation | ||
| IL_7PJT_169 | No text annotation | ||
| IL_7PJT_170 | No text annotation | ||
| IL_7PJT_171 | No text annotation | ||
| IL_7PJT_172 | No text annotation | ||
| IL_7PJT_173 | No text annotation | ||
| IL_7PJT_174 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7PJT_001 | 1/A/30:31, 1/A/474:481, 1/A/509:510 | No text annotation Not in a motif group | homologous J3_5J7L_036 NA | |
| J3_7PJT_002 | 1/A/56:57, 1/A/70:76, 1/A/110:114 | No text annotation Not in a motif group | homologous J3_7RQB_002 NA | |
| J3_7PJT_003 | 1/A/297:301, 1/A/316:325, 1/A/337:341 | No text annotation Not in a motif group | ||
| J3_7PJT_004 | 1/A/682:689, 1/A/773:775, 1/A/791:795 | No text annotation Not in a motif group | ||
| J3_7PJT_005 | 1/A/698:700, 1/A/732:736, 1/A/760:763 | No text annotation Not in a motif group | homologous J3_7RQB_005 NA | |
| J3_7PJT_006 | 1/A/1055:1062, 1/A/1076:1091, 1/A/1100:1104 | No text annotation Not in a motif group | ||
| J3_7PJT_007 | 1/A/1298:1303, 1/A/1625:1627, 1/A/1639:1642 | No text annotation Not in a motif group | homologous J3_5J7L_041 NA | |
| J3_7PJT_008 | 1/A/1306:1309, 1/A/1605:1611, 1/A/1620:1622 | No text annotation Not in a motif group | homologous J3_7A0S_007 NA | |
| J3_7PJT_009 | 1/A/1344:1349, 1/A/1382:1386, 1/A/1401:1403 | No text annotation Not in a motif group | ||
| J3_7PJT_010 | 1/A/2090:2093, 1/A/2196:2200, 1/A/2223:2229 | No text annotation Not in a motif group | ||
| J3_7PJT_011 | 1/A/2295:2299, 1/A/2317:2323, 1/A/2332:2337 | No text annotation Not in a motif group | ||
| J3_7PJT_012 | 1/A/2517:2520, 1/A/2545:2547, 1/A/2561:2567 | No text annotation Not in a motif group | ||
| J3_7PJT_013 | 1/A/2789:2791, 1/A/2805:2806, 1/A/2892:2894 | No text annotation Not in a motif group | homologous J3_5J7L_047 NA | |
| J3_7PJT_014 | 1/A/2812:2815, 1/A/2831:2836, 1/A/2882:2888 | No text annotation Not in a motif group | homologous J3_5J7L_048 NA | |
| J3_7PJT_015 | 1/B/10:16, 1/B/68:70, 1/B/106:110 | No text annotation Not in a motif group | homologous J3_5J7L_049 NA | |
| J3_7PJT_016 | 1/a/46:47, 1/a/361:367, 1/a/393:395 | No text annotation Not in a motif group | homologous J3_5J7L_001 NA | |
| J3_7PJT_017 | 1/a/586:588, 1/a/651:654, 1/a/754:755 | No text annotation Not in a motif group | homologous J3_5J7L_002 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_7PJT_018 | No text annotation | ||
| J3_7PJT_019 | No text annotation | ||
| J3_7PJT_020 | No text annotation | ||
| J3_7PJT_021 | No text annotation | ||
| J3_7PJT_022 | No text annotation | ||
| J3_7PJT_023 | No text annotation | ||
| J3_7PJT_024 | No text annotation | ||
| J3_7PJT_025 | No text annotation | ||
| J3_7PJT_026 | No text annotation | ||
| J3_7PJT_027 | No text annotation |
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