7Z20 Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7Z20_001 | 1/a/38:44 | No text annotation Not in a motif group | geometric HL_5J7L_203 HL_87939.1 | |
| HL_7Z20_002 | 1/a/86:90 | No text annotation Not in a motif group | homologous HL_5J7L_204 HL_38927.2 | |
| HL_7Z20_003 | 1/b/59:68 | No text annotation Not in a motif group | geometric HL_4GXY_003 HL_96598.1 | |
| HL_7Z20_004 | 1/b/87:95 | No text annotation Not in a motif group | geometric HL_2Y8W_001 HL_01057.1 | |
| HL_7Z20_005 | 1/b/123:128 | No text annotation Not in a motif group | geometric HL_4V9F_011 HL_75407.1 | |
| HL_7Z20_006 | 1/b/137:142 | No text annotation Not in a motif group | geometric HL_6QN3_001 HL_03562.2 | |
| HL_7Z20_007 | 1/b/158:168 | No text annotation Not in a motif group | geometric HL_5J7L_138 HL_81820.1 | |
| HL_7Z20_008 | 1/b/194:201 | No text annotation Not in a motif group | geometric HL_4WF9_006 HL_06192.2 | |
| HL_7Z20_009 | 1/b/225:230 | No text annotation Not in a motif group | geometric HL_5J7L_140 HL_27930.1 | |
| HL_7Z20_010 | 1/b/246:252 | No text annotation Not in a motif group | geometric HL_5J7L_141 HL_67216.7 | |
| HL_7Z20_011 | 1/b/305:312 | T-loop with 1 bulged base Not in a motif group | geometric HL_5J7L_142 HL_89380.2 | |
| HL_7Z20_012 | 1/b/319:323 | No text annotation Not in a motif group | geometric HL_5J7L_143 HL_75407.1 | |
| HL_7Z20_013 | 1/b/327:335 | No text annotation Not in a motif group | geometric HL_5J7L_144 HL_08002.8 | |
| HL_7Z20_014 | 1/b/382:392 | No text annotation Not in a motif group | geometric HL_5J7L_145 HL_91503.4 | |
| HL_7Z20_015 | 1/b/410:417 | No text annotation Not in a motif group | geometric HL_5J7L_146 HL_96598.1 | |
| HL_7Z20_016 | 1/b/462:467 | No text annotation Not in a motif group | geometric HL_7RQB_015 HL_42097.1 | |
| HL_7Z20_017 | 1/b/487:493 | No text annotation Not in a motif group | geometric HL_5J7L_148 HL_42097.1 | |
| HL_7Z20_019 | 1/b/565:574 | T-loop with 2 stacked bulged bases Not in a motif group | geometric HL_5J7L_150 HL_89380.2 | |
| HL_7Z20_020 | 1/b/610:616 | No text annotation Not in a motif group | geometric HL_5J7L_151 HL_90617.2 | |
| HL_7Z20_021 | 1/b/628:633 | GNRA Not in a motif group | geometric HL_5J7L_152 HL_42097.1 | |
| HL_7Z20_022 | 1/b/640:646 | GNRA with one bulged base Not in a motif group | geometric HL_4WF9_021 HL_42097.1 | |
| HL_7Z20_023 | 1/b/711:718 | No text annotation Not in a motif group | geometric HL_5J7L_154 HL_84085.2 | |
| HL_7Z20_024 | 1/b/743:752 | No text annotation Not in a motif group | geometric HL_7A0S_022 HL_39334.6 | |
| HL_7Z20_025 | 1/b/778:784 | Other HL Not in a motif group | geometric HL_2NUE_001 HL_07518.1 | |
| HL_7Z20_026 | 1/b/825:830 | No text annotation Not in a motif group | geometric HL_7RQB_025 HL_64365.1 | |
| HL_7Z20_027 | 1/b/882:892 | No text annotation Not in a motif group | ||
| HL_7Z20_028 | 1/b/954:961 | GNRA Not in a motif group | geometric HL_4WF9_027 HL_42097.1 | |
| HL_7Z20_029 | 1/b/977:984 | No text annotation Not in a motif group | geometric HL_5TBW_006 HL_98984.2 | |
| HL_7Z20_030 | 1/b/1062:1074 | No text annotation Not in a motif group | ||
| HL_7Z20_031 | 1/b/1091:1098 | No text annotation Not in a motif group | ||
| HL_7Z20_032 | 1/b/1169:1178 | No text annotation Not in a motif group | ||
| HL_7Z20_033 | 1/b/1221:1226 | Other HL Not in a motif group | geometric HL_5J7L_164 HL_87030.2 | |
| HL_7Z20_034 | 1/b/1280:1288 | T-loop with 2 stacked bulged bases Not in a motif group | geometric HL_5J7L_165 HL_89380.2 | |
| HL_7Z20_035 | 1/b/1323:1329 | No text annotation Not in a motif group | geometric HL_5J7L_166 HL_46680.1 | |
| HL_7Z20_036 | 1/b/1362:1367 | Other HL Not in a motif group | geometric HL_5J7L_167 HL_87030.2 | |
| HL_7Z20_037 | 1/b/1388:1397 | No text annotation Not in a motif group | geometric HL_5J7L_168 HL_69023.2 | |
| HL_7Z20_038 | 1/b/1450:1458 | No text annotation Not in a motif group | geometric HL_4L8H_001 HL_53837.1 | |
| HL_7Z20_039 | 1/b/1491:1497 | No text annotation Not in a motif group | geometric HL_5J7L_170 HL_46680.1 | |
| HL_7Z20_040 | 1/b/1532:1537 | UNCG Not in a motif group | geometric HL_3U4M_001 HL_03562.2 | |
| HL_7Z20_041 | 1/b/1564:1567 | No text annotation Not in a motif group | geometric HL_5J7L_172 HL_38927.2 | |
| HL_7Z20_042 | 1/b/1611:1618 | No text annotation Not in a motif group | geometric HL_7RQB_040 HL_64430.2 | |
| HL_7Z20_043 | 1/b/1629:1635 | GNRA with one bulged base Not in a motif group | geometric HL_5J7L_174 HL_42097.1 | |
| HL_7Z20_044 | 1/b/1690:1695 | No text annotation Not in a motif group | geometric HL_7RQB_042 HL_03562.2 | |
| HL_7Z20_045 | 1/b/1727:1730 | No text annotation Not in a motif group | geometric HL_5B2T_002 HL_38927.2 | |
| HL_7Z20_046 | 1/b/1751:1755 | No text annotation Not in a motif group | geometric HL_5J7L_177 HL_76539.2 | |
| HL_7Z20_047 | 1/b/1776:1786 | No text annotation Not in a motif group | geometric HL_5J7L_178 HL_43613.5 | |
| HL_7Z20_048 | 1/b/1805:1810 | No text annotation Not in a motif group | geometric HL_5J7L_179 HL_42097.1 | |
| HL_7Z20_049 | 1/b/1867:1872 | No text annotation Not in a motif group | geometric HL_361D_002 HL_90617.2 | |
| HL_7Z20_050 | 1/b/1909:1919 | No text annotation Not in a motif group | geometric HL_5TBW_049 HL_71924.2 | |
| HL_7Z20_051 | 1/b/1948:1956 | No text annotation Not in a motif group | geometric HL_5J7L_182 HL_51824.1 | |
| HL_7Z20_052 | 1/b/2026:2035 | No text annotation Not in a motif group | geometric HL_4WF9_047 HL_90642.6 | |
| HL_7Z20_053 | 1/b/2120:2176 | No text annotation Not in a motif group | ||
| HL_7Z20_054 | 1/b/2208:2214 | No text annotation Not in a motif group | geometric HL_5J7L_185 HL_16845.6 | |
| HL_7Z20_055 | 1/b/2247:2255 | No text annotation Not in a motif group | geometric HL_4WF9_049 HL_53171.2 | |
| HL_7Z20_056 | 1/b/2263:2275 | No text annotation Not in a motif group | geometric HL_5J7L_187 HL_19870.6 | |
| HL_7Z20_057 | 1/b/2302:2312 | No text annotation Not in a motif group | geometric HL_5J7L_188 HL_11805.3 | |
| HL_7Z20_058 | 1/b/2323:2330 | No text annotation Not in a motif group | geometric HL_5J7L_189 HL_12078.2 | |
| HL_7Z20_059 | 1/b/2355:2360 | Other HL Not in a motif group | geometric HL_5J7L_190 HL_87030.2 | |
| HL_7Z20_060 | 1/b/2373:2378 | No text annotation Not in a motif group | geometric HL_7A0S_020 HL_42097.1 | |
| HL_7Z20_061 | 1/b/2403:2412 | No text annotation Not in a motif group | geometric HL_5J7L_192 HL_30784.2 | |
| HL_7Z20_062 | 1/b/2470:2478 | No text annotation Not in a motif group | geometric HL_4V9F_062 HL_06192.2 | |
| HL_7Z20_063 | 1/b/2527:2534 | No text annotation Not in a motif group | geometric HL_5J7L_194 HL_88526.2 | |
| HL_7Z20_064 | 1/b/2550:2556 | No text annotation Not in a motif group | geometric HL_4WF9_058 HL_43656.2 | |
| HL_7Z20_065 | 1/b/2593:2598 | GNRA Not in a motif group | geometric HL_4V9F_065 HL_42097.1 | |
| HL_7Z20_066 | 1/b/2657:2662 | GNRA Not in a motif group | geometric HL_4V9F_066 HL_42097.1 | |
| HL_7Z20_067 | 1/b/2700:2705 | Ribsomal LSU H95 Not in a motif group | geometric HL_5J7L_198 HL_46680.1 | |
| HL_7Z20_068 | 1/b/2744:2758 | No text annotation Not in a motif group | geometric HL_5J7L_199 HL_56677.7 | |
| HL_7Z20_069 | 1/b/2794:2800 | No text annotation Not in a motif group | ||
| HL_7Z20_070 | 1/b/2818:2826 | No text annotation Not in a motif group | geometric HL_5J7L_201 HL_27930.1 | |
| HL_7Z20_071 | 1/b/2855:2860 | Other HL Not in a motif group | geometric HL_5J7L_202 HL_42097.1 | |
| HL_7Z20_072 | 1/v/13:22 | No text annotation Not in a motif group | geometric HL_5B63_003 HL_25462.2 | |
| HL_7Z20_073 | 1/v/30:40 | No text annotation Not in a motif group | ||
| HL_7Z20_074 | 1/v/53:61 | T-loop with 2 stacked bulged bases Not in a motif group | geometric HL_4YCO_003 HL_22280.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7Z20_018 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7Z20_001 | 1/a/17:18, 1/a/65:67 | Major groove intercalation Not in a motif group | homologous IL_5J7L_355 IL_37497.2 | |
| IL_7Z20_002 | 1/a/23:28, 1/a/56:60 | No text annotation Not in a motif group | ||
| IL_7Z20_003 | 1/a/30:31, 1/a/51:54 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_357 IL_09061.6 | |
| IL_7Z20_004 | 1/a/34:38, 1/a/44:48 | Symmetric double minor groove platform Not in a motif group | homologous IL_5J7L_358 IL_58103.6 | |
| IL_7Z20_005 | 1/a/71:79, 1/a/97:105 | Bacterial 5S Loop E Not in a motif group | homologous IL_5J7L_359 IL_56455.3 | |
| IL_7Z20_006 | 1/b/24:30, 1/b/510:516 | Triple sheared with non-canonical cWW Not in a motif group | geometric IL_5J7L_245 IL_66414.6 | |
| IL_7Z20_007 | 1/b/36:37, 1/b/442:444 | Single bulged A Not in a motif group | geometric IL_7RQB_002 IL_37497.2 | |
| IL_7Z20_008 | 1/b/43:44, 1/b/434:436 | Minor groove platform Not in a motif group | geometric IL_5J7L_247 IL_42622.2 | |
| IL_7Z20_009 | 1/b/81:85, 1/b/97:105 | No text annotation Not in a motif group | ||
| IL_7Z20_010 | 1/b/183:184, 1/b/212:214 | Single stack bend Not in a motif group | geometric IL_4WF9_007 IL_76488.2 | |
| IL_7Z20_011 | 1/b/188:194, 1/b/201:208 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_5J7L_250 IL_04346.7 | |
| IL_7Z20_012 | 1/b/239:245, 1/b/253:258 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_5J7L_251 IL_76042.2 | |
| IL_7Z20_013 | 1/b/269:271, 1/b/366:370 | No text annotation Not in a motif group | geometric IL_5J7L_252 IL_47972.1 | |
| IL_7Z20_014 | 1/b/274:281, 1/b/359:363 | No text annotation Not in a motif group | ||
| IL_7Z20_015 | 1/b/293:295, 1/b/343:347 | No text annotation Not in a motif group | geometric IL_4WF9_014 IL_69440.1 | |
| IL_7Z20_016 | 1/b/481:484, 1/b/496:509 | No text annotation Not in a motif group | geometric IL_5J7L_255 IL_60992.6 | |
| IL_7Z20_017 | 1/b/536:539, 1/b/553:556 | Double sheared Not in a motif group | geometric IL_5J7L_256 IL_09705.9 | |
| IL_7Z20_018 | 1/b/563:565, 1/b/574:576 | No text annotation Not in a motif group | geometric IL_5J7L_257 IL_95997.1 | |
| IL_7Z20_019 | 1/b/605:609, 1/b/617:621 | AAA cross-strand stack Not in a motif group | geometric IL_5J7L_258 IL_17136.1 | |
| IL_7Z20_020 | 1/b/671:673, 1/b/805:807 | No text annotation Not in a motif group | geometric IL_7RQB_017 IL_95997.1 | |
| IL_7Z20_021 | 1/b/673:677, 1/b/798:805 | No text annotation Not in a motif group | geometric IL_7RQB_018 IL_17470.6 | |
| IL_7Z20_022 | 1/b/696:697, 1/b/762:764 | Single bulged A Not in a motif group | geometric IL_5J7L_261 IL_37497.2 | |
| IL_7Z20_023 | 1/b/701:702, 1/b/727:729 | Single bulged G Not in a motif group | geometric IL_5J7L_262 IL_00225.2 | |
| IL_7Z20_024 | 1/b/702:706, 1/b/723:727 | Triple sheared Not in a motif group | geometric IL_5J7L_263 IL_56467.8 | |
| IL_7Z20_025 | 1/b/737:739, 1/b/756:757 | Major groove platform Not in a motif group | geometric IL_4WF9_026 IL_27635.1 | |
| IL_7Z20_026 | 1/b/774:776, 1/b/786:790 | Multiple bulged bases Not in a motif group | geometric IL_5J7L_265 IL_90991.6 | |
| IL_7Z20_027 | 1/b/843:847, 1/b/929:933 | No text annotation Not in a motif group | ||
| IL_7Z20_028 | 1/b/849:850, 1/b/925:927 | Single stack bend Not in a motif group | geometric IL_5J7L_269 IL_76488.2 | |
| IL_7Z20_029 | 1/b/855:861, 1/b/914:920 | 7x7 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_5J7L_270 IL_93830.3 | |
| IL_7Z20_030 | 1/b/861:862, 1/b/912:914 | Single bulged G Not in a motif group | geometric IL_5J7L_271 IL_00225.2 | |
| IL_7Z20_031 | 1/b/863:867, 1/b/908:911 | C-loop Not in a motif group | geometric IL_5J7L_272 IL_63596.6 | |
| IL_7Z20_032 | 1/b/869:871, 1/b/904:906 | No text annotation Not in a motif group | geometric IL_5J7L_273 IL_95997.1 | |
| IL_7Z20_033 | 1/b/874:878, 1/b/897:901 | No text annotation Not in a motif group | ||
| IL_7Z20_034 | 1/b/879:880, 1/b/894:896 | No text annotation Not in a motif group | ||
| IL_7Z20_035 | 1/b/993:995, 1/b/1158:1159 | Single bulged C Not in a motif group | geometric IL_5J7L_276 IL_61258.12 | |
| IL_7Z20_036 | 1/b/997:1001, 1/b/1152:1156 | UAA/GAN Not in a motif group | geometric IL_5J7L_277 IL_89002.2 | |
| IL_7Z20_037 | 1/b/1003:1010, 1/b/1149:1150 | SSU/LSU pseudoknot Not in a motif group | geometric IL_5J7L_278 IL_15861.7 | |
| IL_7Z20_038 | 1/b/1010:1012, 1/b/1148:1149 | Single bulged U Not in a motif group | geometric IL_5J7L_279 IL_83039.13 | |
| IL_7Z20_039 | 1/b/1017:1023, 1/b/1139:1143 | No text annotation Not in a motif group | geometric IL_4WF9_039 IL_57188.3 | |
| IL_7Z20_040 | 1/b/1023:1029, 1/b/1123:1139 | No text annotation Not in a motif group | geometric IL_5J7L_281 IL_50715.1 | |
| IL_7Z20_041 | 1/b/1030:1033, 1/b/1120:1122 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5J7L_282 IL_82068.2 | |
| IL_7Z20_042 | 1/b/1035:1042, 1/b/1111:1118 | No text annotation Not in a motif group | ||
| IL_7Z20_044 | 1/b/1058:1062, 1/b/1074:1078 | No text annotation Not in a motif group | ||
| IL_7Z20_045 | 1/b/1195:1197, 1/b/1246:1249 | Isolated cWS basepair Not in a motif group | geometric IL_4WF9_044 IL_52767.2 | |
| IL_7Z20_046 | 1/b/1201:1205, 1/b/1239:1242 | No text annotation Not in a motif group | geometric IL_5J7L_287 IL_91920.1 | |
| IL_7Z20_047 | 1/b/1207:1214, 1/b/1233:1237 | Kink-turn Not in a motif group | geometric IL_5J7L_288 IL_70923.2 | |
| IL_7Z20_048 | 1/b/1261:1268, 1/b/2010:2016 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_5J7L_289 IL_04346.7 | |
| IL_7Z20_049 | 1/b/1309:1312, 1/b/1602:1603 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_7RQB_050 IL_50694.2 | |
| IL_7Z20_050 | 1/b/1318:1322, 1/b/1330:1332 | C-loop Not in a motif group | geometric IL_5J7L_291 IL_63596.6 | |
| IL_7Z20_051 | 1/b/1350:1354, 1/b/1375:1379 | UAA/GAN Not in a motif group | geometric IL_5J7L_292 IL_89002.2 | |
| IL_7Z20_052 | 1/b/1356:1360, 1/b/1369:1373 | tSH-tHW-tHS Not in a motif group | geometric IL_5J7L_293 IL_17136.1 | |
| IL_7Z20_053 | 1/b/1414:1415, 1/b/1581:1586 | No text annotation Not in a motif group | geometric IL_5J7L_294 IL_90348.1 | |
| IL_7Z20_054 | 1/b/1416:1420, 1/b/1576:1580 | UAA/GAN Not in a motif group | geometric IL_5J7L_295 IL_89002.2 | |
| IL_7Z20_055 | 1/b/1431:1434, 1/b/1556:1560 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5J7L_296 IL_55178.1 | |
| IL_7Z20_056 | 1/b/1436:1439, 1/b/1550:1554 | tSH-tHW Not in a motif group | geometric IL_5J7L_297 IL_04059.1 | |
| IL_7Z20_057 | 1/b/1449:1450, 1/b/1458:1460 | Single bulged U Not in a motif group | geometric IL_5J7L_279 IL_83039.13 | |
| IL_7Z20_058 | 1/b/1467:1470, 1/b/1519:1523 | No text annotation Not in a motif group | geometric IL_5J7L_299 IL_68574.2 | |
| IL_7Z20_059 | 1/b/1473:1477, 1/b/1512:1516 | tSH-tHW-tHS Not in a motif group | geometric IL_5J7L_300 IL_38862.1 | |
| IL_7Z20_060 | 1/b/1480:1481, 1/b/1506:1509 | No text annotation Not in a motif group | ||
| IL_7Z20_061 | 1/b/1488:1490, 1/b/1498:1499 | Single bulged A Not in a motif group | geometric IL_5J7L_302 IL_37497.2 | |
| IL_7Z20_062 | 1/b/1525:1528, 1/b/1541:1545 | UAA/GAN variation Not in a motif group | geometric IL_5J7L_303 IL_07235.1 | |
| IL_7Z20_063 | 1/b/1650:1655, 1/b/2003:2005 | No text annotation Not in a motif group | geometric IL_5J7L_304 IL_12566.2 | |
| IL_7Z20_064 | 1/b/1662:1664, 1/b/1994:1996 | Isolated tWW turn Not in a motif group | geometric IL_4WF9_063 IL_54997.7 | |
| IL_7Z20_065 | 1/b/1665:1668, 1/b/1992:1993 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_5J7L_306 IL_50694.2 | |
| IL_7Z20_066 | 1/b/1668:1673, 1/b/1989:1992 | Intercalated tWH Not in a motif group | geometric IL_5J7L_307 IL_82842.2 | |
| IL_7Z20_067 | 1/b/1685:1690, 1/b/1695:1701 | tSH-tSH-tHH-tHS Not in a motif group | geometric IL_5J7L_308 IL_65969.2 | |
| IL_7Z20_068 | 1/b/1711:1717, 1/b/1741:1745 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_5J7L_309 IL_88269.3 | |
| IL_7Z20_069 | 1/b/1719:1723, 1/b/1735:1739 | Triple sheared Not in a motif group | geometric IL_5J7L_310 IL_56467.8 | |
| IL_7Z20_070 | 1/b/1724:1726, 1/b/1732:1734 | No text annotation Not in a motif group | geometric IL_3SZX_001 IL_95997.1 | |
| IL_7Z20_071 | 1/b/1726:1727, 1/b/1730:1732 | Single bulged C Not in a motif group | geometric IL_3SNP_003 IL_61258.12 | |
| IL_7Z20_072 | 1/b/1769:1770, 1/b/1979:1981 | Single bulged A Not in a motif group | geometric IL_5J7L_312 IL_37497.2 | |
| IL_7Z20_073 | 1/b/1797:1803, 1/b/1812:1820 | Kink-turn related Not in a motif group | geometric IL_5J7L_313 IL_17069.3 | |
| IL_7Z20_074 | 1/b/1836:1839, 1/b/1901:1902 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | geometric IL_5J7L_314 IL_88739.1 | |
| IL_7Z20_075 | 1/b/1840:1841, 1/b/1897:1900 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | geometric IL_4V9F_067 IL_16396.2 | |
| IL_7Z20_076 | 1/b/1845:1848, 1/b/1892:1893 | Major groove minor groove platform; mini C-loop Not in a motif group | geometric IL_1I6U_002 IL_09061.6 | |
| IL_7Z20_077 | 1/b/1863:1866, 1/b/1873:1877 | UAA/GAN related Not in a motif group | geometric IL_5J7L_317 IL_77691.1 | |
| IL_7Z20_078 | 1/b/1932:1933, 1/b/1963:1966 | Multiple bulged bases Not in a motif group | geometric IL_7RQB_076 IL_59677.2 | |
| IL_7Z20_079 | 1/b/1933:1944, 1/b/1960:1963 | No text annotation Not in a motif group | geometric IL_7A0S_072 IL_81589.2 | |
| IL_7Z20_080 | 1/b/2049:2051, 1/b/2616:2617 | Major groove platform Not in a motif group | geometric IL_5J7L_320 IL_27635.1 | |
| IL_7Z20_081 | 1/b/2053:2055, 1/b/2611:2614 | No text annotation Not in a motif group | geometric IL_5J7L_321 IL_54678.5 | |
| IL_7Z20_082 | 1/b/2066:2068, 1/b/2441:2442 | Single bulged U Not in a motif group | geometric IL_7A0S_075 IL_83039.13 | |
| IL_7Z20_083 | 1/b/2069:2070, 1/b/2437:2440 | Minor groove platform Not in a motif group | geometric IL_5TBW_094 IL_42622.2 | |
| IL_7Z20_084 | 1/b/2080:2082, 1/b/2235:2238 | Isolated tHS basepair with bulges Not in a motif group | geometric IL_5J7L_325 IL_38958.7 | |
| IL_7Z20_085 | 1/b/2084:2086, 1/b/2231:2233 | No text annotation Not in a motif group | geometric IL_5J7L_326 IL_95997.1 | |
| IL_7Z20_086 | 1/b/2102:2120, 1/b/2176:2185 | No text annotation Not in a motif group | ||
| IL_7Z20_087 | 1/b/2201:2203, 1/b/2219:2220 | Single bulged U Not in a motif group | geometric IL_5J7L_331 IL_83039.13 | |
| IL_7Z20_088 | 1/b/2296:2298, 1/b/2316:2320 | No text annotation Not in a motif group | geometric IL_5J7L_332 IL_56105.1 | |
| IL_7Z20_089 | 1/b/2349:2352, 1/b/2363:2366 | Double sheared Not in a motif group | geometric IL_5J7L_333 IL_09705.9 | |
| IL_7Z20_090 | 1/b/2400:2402, 1/b/2413:2414 | Single bulged U Not in a motif group | geometric IL_3MXH_003 IL_83039.13 | |
| IL_7Z20_091 | 1/b/2452:2453, 1/b/2497:2499 | Single stack bend Not in a motif group | geometric IL_4WF9_089 IL_76488.2 | |
| IL_7Z20_092 | 1/b/2453:2454, 1/b/2495:2497 | Major groove platform Not in a motif group | geometric IL_7RQB_092 IL_27635.1 | |
| IL_7Z20_093 | 1/b/2456:2458, 1/b/2492:2493 | Major groove platform Not in a motif group | geometric IL_4WF9_091 IL_27635.1 | |
| IL_7Z20_094 | 1/b/2458:2460, 1/b/2488:2492 | Major groove minor groove platform with extra cWW Not in a motif group | geometric IL_7A0S_086 IL_92788.2 | |
| IL_7Z20_095 | 1/b/2465:2469, 1/b/2479:2483 | Triple sheared Not in a motif group | geometric IL_5J7L_338 IL_56467.8 | |
| IL_7Z20_096 | 1/b/2506:2507, 1/b/2579:2581 | Major groove platform Not in a motif group | geometric IL_7RQB_096 IL_76223.2 | |
| IL_7Z20_097 | 1/b/2509:2511, 1/b/2573:2577 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5J7L_340 IL_90933.2 | |
| IL_7Z20_098 | 1/b/2511:2512, 1/b/2570:2573 | No text annotation Not in a motif group | geometric IL_5J7L_341 IL_71530.2 | |
| IL_7Z20_099 | 1/b/2521:2522, 1/b/2539:2542 | Minor groove platform with intercalation Not in a motif group | geometric IL_5J7L_342 IL_95601.3 | |
| IL_7Z20_100 | 1/b/2590:2591, 1/b/2600:2602 | Single bulged A Not in a motif group | geometric IL_7RQB_101 IL_37497.2 | |
| IL_7Z20_101 | 1/b/2635:2639, 1/b/2773:2781 | No text annotation Not in a motif group | geometric IL_5J7L_345 IL_04638.1 | |
| IL_7Z20_102 | 1/b/2651:2657, 1/b/2662:2667 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | geometric IL_5J7L_346 IL_16458.1 | |
| IL_7Z20_103 | 1/b/2679:2683, 1/b/2724:2726 | C-loop Not in a motif group | geometric IL_5J7L_347 IL_63596.6 | |
| IL_7Z20_104 | 1/b/2686:2690, 1/b/2717:2721 | No text annotation Not in a motif group | geometric IL_5J7L_348 IL_08296.3 | |
| IL_7Z20_105 | 1/b/2694:2695, 1/b/2710:2713 | Multiple bulged bases Not in a motif group | geometric IL_5J7L_349 IL_71530.2 | |
| IL_7Z20_106 | 1/b/2736:2741, 1/b/2761:2766 | UAA/GAN with extra cWW Not in a motif group | geometric IL_5J7L_350 IL_49767.5 | |
| IL_7Z20_107 | 1/b/2805:2810, 1/b/2888:2891 | No text annotation Not in a motif group | geometric IL_5J7L_351 IL_49460.2 | |
| IL_7Z20_108 | 1/b/2837:2838, 1/b/2877:2879 | Major groove intercalation Not in a motif group | geometric IL_5J7L_352 IL_16396.2 | |
| IL_7Z20_109 | 1/b/2842:2845, 1/b/2869:2873 | Multiple bulged bases with non-canonical cWW Not in a motif group | geometric IL_5J7L_353 IL_58764.3 | |
| IL_7Z20_110 | 1/b/2846:2851, 1/b/2864:2868 | No text annotation Not in a motif group | geometric IL_5J7L_354 IL_83162.5 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7Z20_043 | Kink-turn | ||
| IL_7Z20_111 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7Z20_001 | 1/a/10:16, 1/a/68:70, 1/a/106:110 | No text annotation Not in a motif group | homologous J3_5J7L_049 NA | |
| J3_7Z20_002 | 1/b/30:31, 1/b/474:481, 1/b/509:510 | No text annotation Not in a motif group | ||
| J3_7Z20_003 | 1/b/56:57, 1/b/70:76, 1/b/110:114 | No text annotation Not in a motif group | ||
| J3_7Z20_004 | 1/b/682:688, 1/b/772:774, 1/b/790:793 | No text annotation Not in a motif group | ||
| J3_7Z20_005 | 1/b/697:699, 1/b/731:735, 1/b/759:762 | No text annotation Not in a motif group | ||
| J3_7Z20_006 | 1/b/1297:1302, 1/b/1624:1626, 1/b/1638:1641 | No text annotation Not in a motif group | ||
| J3_7Z20_007 | 1/b/1305:1308, 1/b/1604:1610, 1/b/1619:1621 | No text annotation Not in a motif group | ||
| J3_7Z20_008 | 1/b/2090:2092, 1/b/2195:2199, 1/b/2222:2227 | No text annotation Not in a motif group | ||
| J3_7Z20_009 | 1/b/2294:2296, 1/b/2320:2322, 1/b/2331:2336 | No text annotation Not in a motif group | ||
| J3_7Z20_010 | 1/b/2788:2790, 1/b/2804:2805, 1/b/2891:2893 | No text annotation Not in a motif group | ||
| J3_7Z20_011 | 1/b/2811:2814, 1/b/2830:2835, 1/b/2881:2887 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
Coloring options: