4V6K Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4V6K_001 | 1/AA/38:44 | No text annotation Not in a motif group | geometric HL_5TBW_006 HL_98557.5 | |
| HL_4V6K_002 | 1/AA/85:91 | No text annotation Not in a motif group | geometric HL_6D12_001 HL_82678.2 | |
| HL_4V6K_003 | 1/AB/59:68 | No text annotation Not in a motif group | homologous HL_7RQB_001 HL_29414.1 | |
| HL_4V6K_004 | 1/AB/87:95 | No text annotation Not in a motif group | homologous HL_5J7L_135 HL_17926.5 | |
| HL_4V6K_005 | 1/AB/123:128 | No text annotation Not in a motif group | homologous HL_5J7L_136 HL_62869.3 | |
| HL_4V6K_006 | 1/AB/137:142 | No text annotation Not in a motif group | ||
| HL_4V6K_007 | 1/AB/158:168 | No text annotation Not in a motif group | homologous HL_5J7L_138 HL_81820.1 | |
| HL_4V6K_008 | 1/AB/194:201 | No text annotation Not in a motif group | homologous HL_4WF9_006 HL_23481.5 | |
| HL_4V6K_009 | 1/AB/225:230 | No text annotation Not in a motif group | homologous HL_4WF9_007 HL_96776.3 | |
| HL_4V6K_010 | 1/AB/246:252 | No text annotation Not in a motif group | homologous HL_7RQB_008 HL_67216.5 | |
| HL_4V6K_011 | 1/AB/305:312 | T-loop with 1 bulged base Not in a motif group | homologous HL_5J7L_142 HL_68493.6 | |
| HL_4V6K_012 | 1/AB/319:323 | No text annotation Not in a motif group | homologous HL_7A0S_011 HL_98557.5 | |
| HL_4V6K_013 | 1/AB/327:335 | No text annotation Not in a motif group | homologous HL_5J7L_144 HL_08002.6 | |
| HL_4V6K_014 | 1/AB/382:392 | No text annotation Not in a motif group | homologous HL_5J7L_145 HL_91503.3 | |
| HL_4V6K_015 | 1/AB/410:417 | No text annotation Not in a motif group | homologous HL_7RQB_014 HL_32512.8 | |
| HL_4V6K_016 | 1/AB/462:467 | GNRA Not in a motif group | homologous HL_4WF9_015 HL_43074.18 | |
| HL_4V6K_017 | 1/AB/487:493 | No text annotation Not in a motif group | homologous HL_5J7L_148 HL_68304.6 | |
| HL_4V6K_018 | 1/AB/540:553 | No text annotation Not in a motif group | ||
| HL_4V6K_019 | 1/AB/564:577 | No text annotation Not in a motif group | ||
| HL_4V6K_020 | 1/AB/611:617 | No text annotation Not in a motif group | homologous HL_5J7L_151 HL_25660.1 | |
| HL_4V6K_021 | 1/AB/629:634 | GNRA Not in a motif group | homologous HL_5J7L_152 HL_43074.18 | |
| HL_4V6K_022 | 1/AB/641:647 | No text annotation Not in a motif group | ||
| HL_4V6K_023 | 1/AB/712:719 | No text annotation Not in a motif group | ||
| HL_4V6K_024 | 1/AB/744:753 | No text annotation Not in a motif group | homologous HL_5J7L_155 NA | |
| HL_4V6K_025 | 1/AB/779:785 | Other HL Not in a motif group | geometric HL_1P6V_001 HL_79299.11 | |
| HL_4V6K_026 | 1/AB/826:831 | No text annotation Not in a motif group | homologous HL_7A0S_024 HL_15942.5 | |
| HL_4V6K_027 | 1/AB/885:891 | No text annotation Not in a motif group | geometric HL_5J7L_026 HL_68304.6 | |
| HL_4V6K_028 | 1/AB/954:963 | No text annotation Not in a motif group | homologous HL_5J7L_159 NA | |
| HL_4V6K_029 | 1/AB/977:986 | No text annotation Not in a motif group | ||
| HL_4V6K_030 | 1/AB/1064:1074 | No text annotation Not in a motif group | ||
| HL_4V6K_031 | 1/AB/1092:1099 | No text annotation Not in a motif group | homologous HL_1MMS_002 HL_93727.5 | |
| HL_4V6K_032 | 1/AB/1172:1177 | No text annotation Not in a motif group | geometric HL_4V9F_003 HL_94352.4 | |
| HL_4V6K_033 | 1/AB/1222:1227 | Other HL Not in a motif group | homologous HL_5J7L_164 HL_43074.18 | |
| HL_4V6K_034 | 1/AB/1281:1289 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5J7L_165 HL_33239.17 | |
| HL_4V6K_035 | 1/AB/1324:1330 | No text annotation Not in a motif group | geometric HL_7A0S_033 HL_86880.5 | |
| HL_4V6K_036 | 1/AB/1363:1368 | Other HL Not in a motif group | homologous HL_5J7L_167 HL_43074.18 | |
| HL_4V6K_037 | 1/AB/1389:1398 | No text annotation Not in a motif group | homologous HL_5J7L_168 HL_78457.4 | |
| HL_4V6K_038 | 1/AB/1450:1461 | No text annotation Not in a motif group | ||
| HL_4V6K_039 | 1/AB/1492:1498 | No text annotation Not in a motif group | homologous HL_7RQB_038 HL_86880.5 | |
| HL_4V6K_040 | 1/AB/1533:1538 | UNCG Not in a motif group | homologous HL_5J7L_171 HL_79299.11 | |
| HL_4V6K_041 | 1/AB/1565:1568 | No text annotation Not in a motif group | homologous HL_7A0S_039 HL_69353.7 | |
| HL_4V6K_042 | 1/AB/1612:1619 | No text annotation Not in a motif group | ||
| HL_4V6K_043 | 1/AB/1629:1637 | No text annotation Not in a motif group | homologous HL_4WF9_039 HL_42733.4 | |
| HL_4V6K_044 | 1/AB/1691:1696 | UNCG Not in a motif group | geometric HL_4WF9_040 HL_79299.11 | |
| HL_4V6K_045 | 1/AB/1728:1731 | No text annotation Not in a motif group | geometric HL_6JOO_002 HL_69353.7 | |
| HL_4V6K_046 | 1/AB/1752:1756 | No text annotation Not in a motif group | homologous HL_5J7L_177 HL_79272.3 | |
| HL_4V6K_047 | 1/AB/1777:1787 | No text annotation Not in a motif group | homologous HL_7RQB_045 HL_43613.4 | |
| HL_4V6K_048 | 1/AB/1806:1811 | No text annotation Not in a motif group | homologous HL_4WF9_044 NA | |
| HL_4V6K_049 | 1/AB/1868:1873 | No text annotation Not in a motif group | homologous HL_4WF9_045 NA | |
| HL_4V6K_050 | 1/AB/1910:1920 | No text annotation Not in a motif group | homologous HL_5J7L_181 NA | |
| HL_4V6K_051 | 1/AB/1949:1957 | No text annotation Not in a motif group | homologous HL_7RQB_049 HL_53760.4 | |
| HL_4V6K_052 | 1/AB/2027:2036 | No text annotation Not in a motif group | ||
| HL_4V6K_053 | 1/AB/2143:2148 | No text annotation Not in a motif group | geometric HL_4WF9_003 HL_62869.3 | |
| HL_4V6K_054 | 1/AB/2209:2215 | No text annotation Not in a motif group | homologous HL_5J7L_185 HL_16845.5 | |
| HL_4V6K_055 | 1/AB/2247:2257 | No text annotation Not in a motif group | ||
| HL_4V6K_056 | 1/AB/2264:2276 | No text annotation Not in a motif group | homologous HL_7RQB_054 HL_19870.5 | |
| HL_4V6K_057 | 1/AB/2303:2313 | No text annotation Not in a motif group | geometric HL_2ZZM_002 HL_18218.2 | |
| HL_4V6K_058 | 1/AB/2324:2331 | No text annotation Not in a motif group | homologous HL_4WF9_052 HL_46142.8 | |
| HL_4V6K_059 | 1/AB/2356:2361 | Other HL Not in a motif group | homologous HL_5J7L_190 HL_43074.18 | |
| HL_4V6K_060 | 1/AB/2374:2379 | No text annotation Not in a motif group | homologous HL_7RQB_058 HL_43074.18 | |
| HL_4V6K_061 | 1/AB/2404:2413 | No text annotation Not in a motif group | homologous HL_5J7L_192 HL_48376.4 | |
| HL_4V6K_062 | 1/AB/2471:2479 | No text annotation Not in a motif group | homologous HL_7A0S_059 HL_36421.5 | |
| HL_4V6K_063 | 1/AB/2528:2535 | No text annotation Not in a motif group | homologous HL_5J7L_194 HL_92681.5 | |
| HL_4V6K_064 | 1/AB/2551:2557 | No text annotation Not in a motif group | homologous HL_4WF9_058 HL_26055.6 | |
| HL_4V6K_065 | 1/AB/2594:2599 | GNRA Not in a motif group | homologous HL_5J7L_196 HL_43074.18 | |
| HL_4V6K_066 | 1/AB/2658:2663 | Other HL Not in a motif group | geometric HL_5TBW_048 HL_43074.18 | |
| HL_4V6K_067 | 1/AB/2700:2707 | No text annotation Not in a motif group | geometric HL_3R4F_002 HL_46891.3 | |
| HL_4V6K_068 | 1/AB/2745:2759 | No text annotation Not in a motif group | homologous HL_5J7L_199 HL_56677.5 | |
| HL_4V6K_069 | 1/AB/2796:2800 | No text annotation Not in a motif group | geometric HL_4V88_192 HL_69353.7 | |
| HL_4V6K_070 | 1/AB/2819:2827 | No text annotation Not in a motif group | homologous HL_5J7L_201 HL_05018.6 | |
| HL_4V6K_071 | 1/AB/2856:2861 | Other HL Not in a motif group | homologous HL_5J7L_202 HL_43074.18 | |
| HL_4V6K_072 | 1/BA/12:22 | No text annotation Not in a motif group | homologous HL_4LFB_001 HL_67265.4 | |
| HL_4V6K_074 | 1/BA/158:163 | GNRA Not in a motif group | homologous HL_5J7L_003 HL_43074.18 | |
| HL_4V6K_075 | 1/BA/186:191 | GNRA Not in a motif group | homologous HL_5J7L_004 HL_43074.18 | |
| HL_4V6K_077 | 1/BA/259:267 | No text annotation Not in a motif group | homologous HL_4LFB_006 HL_93727.5 | |
| HL_4V6K_078 | 1/BA/296:301 | GNRA Not in a motif group | homologous HL_4LFB_007 HL_43074.18 | |
| HL_4V6K_079 | 1/BA/320:333 | No text annotation Not in a motif group | homologous HL_4LFB_008 HL_81205.2 | |
| HL_4V6K_080 | 1/BA/342:347 | UNCG Not in a motif group | homologous HL_4LFB_009 HL_79299.11 | |
| HL_4V6K_081 | 1/BA/379:384 | GNRA Not in a motif group | homologous HL_4LFB_010 HL_43074.18 | |
| HL_4V6K_082 | 1/BA/419:424 | UNCG Not in a motif group | homologous HL_4LFB_011 HL_79299.11 | |
| HL_4V6K_084 | 1/BA/521:528 | No text annotation Not in a motif group | homologous HL_5J7L_013 NA | |
| HL_4V6K_085 | 1/BA/617:623 | No text annotation Not in a motif group | homologous HL_5J7L_014 HL_26055.6 | |
| HL_4V6K_086 | 1/BA/689:698 | No text annotation Not in a motif group | homologous HL_4LFB_015 HL_87219.4 | |
| HL_4V6K_087 | 1/BA/726:731 | Other HL Not in a motif group | homologous HL_5J7L_016 HL_43074.18 | |
| HL_4V6K_088 | 1/BA/786:796 | No text annotation Not in a motif group | homologous HL_5J7L_017 HL_87219.4 | |
| HL_4V6K_090 | 1/BA/862:867 | GNRA Not in a motif group | homologous HL_6CZR_090 HL_43074.18 | |
| HL_4V6K_091 | 1/BA/897:902 | GNRA Not in a motif group | homologous HL_4LFB_020 HL_43074.18 | |
| HL_4V6K_092 | 1/BA/963:972 | No text annotation Not in a motif group | homologous HL_5J7L_021 NA | |
| HL_4V6K_093 | 1/BA/1012:1017 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_43074.18 | |
| HL_4V6K_094 | 1/BA/1028:1033 | UNCG Not in a motif group | geometric HL_1I6U_001 HL_79299.11 | |
| HL_4V6K_095 | 1/BA/1076:1081 | GNRA Not in a motif group | homologous HL_6CZR_095 HL_43074.18 | |
| HL_4V6K_096 | 1/BA/1089:1096 | No text annotation Not in a motif group | homologous HL_4LFB_025 HL_54035.7 | |
| HL_4V6K_097 | 1/BA/1134:1140 | No text annotation Not in a motif group | homologous HL_6CZR_097 NA | |
| HL_4V6K_099 | 1/BA/1265:1270 | Other HL Not in a motif group | homologous HL_4LFB_028 HL_43074.18 | |
| HL_4V6K_100 | 1/BA/1314:1323 | No text annotation Not in a motif group | homologous HL_5J7L_028 HL_78061.2 | |
| HL_4V6K_101 | 1/BA/1356:1366 | No text annotation Not in a motif group | homologous HL_4LFB_030 HL_70505.1 | |
| HL_4V6K_102 | 1/BA/1449:1454 | UNCG Not in a motif group | homologous HL_5J7L_030 HL_79299.11 | |
| HL_4V6K_103 | 1/BA/1515:1520 | No text annotation Not in a motif group | homologous HL_4LFB_032 NA | |
| HL_4V6K_104 | 1/BB/13:22 | No text annotation Not in a motif group | homologous HL_1QF6_001 NA | |
| HL_4V6K_105 | 1/BB/30:40 | No text annotation Not in a motif group | homologous HL_5EL4_222 NA | |
| HL_4V6K_106 | 1/BB/53:61 | No text annotation Not in a motif group | homologous HL_6CFJ_108 NA | |
| HL_4V6K_107 | 1/BE/13:22 | No text annotation Not in a motif group | homologous HL_1QF6_001 NA | |
| HL_4V6K_108 | 1/BE/30:40 | No text annotation Not in a motif group | homologous HL_5EL4_222 NA | |
| HL_4V6K_109 | 1/BE/53:61 | No text annotation Not in a motif group | homologous HL_5IBB_211 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4V6K_073 | No text annotation | ||
| HL_4V6K_076 | UNCG | ||
| HL_4V6K_083 | No text annotation | ||
| HL_4V6K_089 | No text annotation | ||
| HL_4V6K_098 | GNRA |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4V6K_001 | 1/AA/17:18, 1/AA/65:67 | Major groove intercalation Not in a motif group | homologous IL_4WF9_112 IL_40508.4 | |
| IL_4V6K_002 | 1/AA/23:28, 1/AA/56:60 | No text annotation Not in a motif group | homologous IL_7RQB_112 NA | |
| IL_4V6K_003 | 1/AA/30:32, 1/AA/50:54 | No text annotation Not in a motif group | ||
| IL_4V6K_004 | 1/AA/34:38, 1/AA/44:48 | No text annotation Not in a motif group | ||
| IL_4V6K_005 | 1/AA/71:79, 1/AA/97:105 | Bacterial 5S Loop E Not in a motif group | homologous IL_7RQB_115 IL_56455.3 | |
| IL_4V6K_006 | 1/AB/24:30, 1/AB/510:516 | Triple sheared with non-canonical cWW Not in a motif group | geometric IL_7RQB_001 IL_66414.5 | |
| IL_4V6K_007 | 1/AB/36:37, 1/AB/442:444 | Single bulged A Not in a motif group | homologous IL_7RQB_002 IL_80007.16 | |
| IL_4V6K_008 | 1/AB/43:45, 1/AB/433:436 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_3TD0_005 IL_01312.13 | |
| IL_4V6K_009 | 1/AB/82:85, 1/AB/97:104 | No text annotation Not in a motif group | ||
| IL_4V6K_010 | 1/AB/183:184, 1/AB/212:214 | Single stack bend Not in a motif group | homologous IL_7A0S_005 IL_04038.4 | |
| IL_4V6K_011 | 1/AB/188:194, 1/AB/201:208 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_7RQB_006 IL_04346.5 | |
| IL_4V6K_012 | 1/AB/239:245, 1/AB/253:258 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_251 IL_35110.5 | |
| IL_4V6K_013 | 1/AB/269:271, 1/AB/366:370 | No text annotation Not in a motif group | homologous IL_5J7L_252 IL_47972.1 | |
| IL_4V6K_014 | 1/AB/274:281, 1/AB/359:363 | No text annotation Not in a motif group | homologous IL_5J7L_253 IL_77870.1 | |
| IL_4V6K_015 | 1/AB/293:295, 1/AB/343:347 | No text annotation Not in a motif group | homologous IL_4WF9_014 IL_69440.1 | |
| IL_4V6K_016 | 1/AB/481:484, 1/AB/496:509 | No text annotation Not in a motif group | geometric IL_4WF9_015 IL_60992.5 | |
| IL_4V6K_017 | 1/AB/536:539, 1/AB/554:557 | Double sheared Not in a motif group | homologous IL_5J7L_256 IL_09705.7 | |
| IL_4V6K_018 | 1/AB/606:610, 1/AB/618:622 | AAA cross-strand stack Not in a motif group | homologous IL_5J7L_258 IL_56467.6 | |
| IL_4V6K_019 | 1/AB/672:674, 1/AB/806:808 | No text annotation Not in a motif group | geometric IL_7RQB_017 IL_01312.13 | |
| IL_4V6K_020 | 1/AB/674:678, 1/AB/799:806 | No text annotation Not in a motif group | homologous IL_7RQB_018 IL_17470.5 | |
| IL_4V6K_021 | 1/AB/697:698, 1/AB/763:765 | Single bulged A Not in a motif group | homologous IL_5J7L_261 IL_80007.16 | |
| IL_4V6K_022 | 1/AB/701:703, 1/AB/728:731 | No text annotation Not in a motif group | geometric IL_4V84_071 IL_01312.13 | |
| IL_4V6K_023 | 1/AB/703:707, 1/AB/724:728 | No text annotation Not in a motif group | ||
| IL_4V6K_024 | 1/AB/738:740, 1/AB/757:758 | Major groove platform Not in a motif group | homologous IL_5J7L_264 IL_80663.10 | |
| IL_4V6K_025 | 1/AB/775:777, 1/AB/787:791 | Multiple bulged bases Not in a motif group | homologous IL_7A0S_021 IL_90991.5 | |
| IL_4V6K_026 | 1/AB/842:848, 1/AB/930:936 | No text annotation Not in a motif group | ||
| IL_4V6K_027 | 1/AB/849:851, 1/AB/926:929 | No text annotation Not in a motif group | geometric IL_4P3T_002 IL_87332.1 | |
| IL_4V6K_028 | 1/AB/856:862, 1/AB/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | homologous IL_5J7L_270 IL_93830.2 | |
| IL_4V6K_029 | 1/AB/862:863, 1/AB/913:915 | No text annotation Not in a motif group | ||
| IL_4V6K_030 | 1/AB/864:868, 1/AB/909:912 | C-loop Not in a motif group | homologous IL_5J7L_272 IL_63596.4 | |
| IL_4V6K_031 | 1/AB/870:872, 1/AB/905:907 | Isolated cWS basepair Not in a motif group | homologous IL_7RQB_030 IL_67621.5 | |
| IL_4V6K_032 | 1/AB/875:879, 1/AB/898:902 | No text annotation Not in a motif group | ||
| IL_4V6K_033 | 1/AB/880:881, 1/AB/895:897 | No text annotation Not in a motif group | homologous IL_5J7L_275 NA | |
| IL_4V6K_034 | 1/AB/994:996, 1/AB/1159:1160 | Single bulged C Not in a motif group | homologous IL_7RQB_035 IL_61258.10 | |
| IL_4V6K_035 | 1/AB/998:1002, 1/AB/1153:1157 | UAA/GAN Not in a motif group | homologous IL_5J7L_277 IL_53523.5 | |
| IL_4V6K_036 | 1/AB/1004:1011, 1/AB/1150:1151 | SSU/LSU pseudoknot Not in a motif group | geometric IL_5J7L_278 IL_15861.6 | |
| IL_4V6K_037 | 1/AB/1011:1013, 1/AB/1149:1150 | Single bulged U Not in a motif group | homologous IL_5J7L_279 IL_83039.11 | |
| IL_4V6K_038 | 1/AB/1017:1024, 1/AB/1140:1145 | No text annotation Not in a motif group | ||
| IL_4V6K_039 | 1/AB/1024:1030, 1/AB/1124:1140 | No text annotation Not in a motif group | ||
| IL_4V6K_040 | 1/AB/1031:1034, 1/AB/1121:1123 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5J7L_282 IL_55456.1 | |
| IL_4V6K_041 | 1/AB/1038:1041, 1/AB/1114:1117 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_283 IL_85877.10 | |
| IL_4V6K_042 | 1/AB/1043:1051, 1/AB/1108:1112 | Kink-turn Not in a motif group | homologous IL_5J7L_284 IL_90538.3 | |
| IL_4V6K_043 | 1/AB/1059:1062, 1/AB/1076:1079 | No text annotation Not in a motif group | homologous IL_6PRV_001 IL_23544.2 | |
| IL_4V6K_044 | 1/AB/1087:1090, 1/AB/1101:1102 | No text annotation Not in a motif group | homologous IL_6PRV_002 NA | |
| IL_4V6K_045 | 1/AB/1196:1198, 1/AB/1247:1250 | Isolated cWS basepair Not in a motif group | homologous IL_7A0S_041 IL_67621.5 | |
| IL_4V6K_046 | 1/AB/1202:1206, 1/AB/1240:1243 | No text annotation Not in a motif group | homologous IL_5J7L_287 IL_91920.1 | |
| IL_4V6K_047 | 1/AB/1208:1215, 1/AB/1234:1238 | Kink-turn Not in a motif group | homologous IL_7A0S_043 IL_29549.9 | |
| IL_4V6K_048 | 1/AB/1310:1313, 1/AB/1603:1604 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_050 IL_70995.6 | |
| IL_4V6K_049 | 1/AB/1319:1324, 1/AB/1330:1333 | No text annotation Not in a motif group | ||
| IL_4V6K_050 | 1/AB/1351:1355, 1/AB/1376:1380 | UAA/GAN Not in a motif group | homologous IL_5J7L_292 IL_34907.2 | |
| IL_4V6K_051 | 1/AB/1357:1361, 1/AB/1370:1374 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_293 IL_39521.5 | |
| IL_4V6K_052 | 1/AB/1415:1416, 1/AB/1582:1587 | No text annotation Not in a motif group | ||
| IL_4V6K_053 | 1/AB/1417:1421, 1/AB/1577:1581 | UAA/GAN Not in a motif group | homologous IL_5J7L_295 IL_53523.5 | |
| IL_4V6K_054 | 1/AB/1432:1435, 1/AB/1557:1561 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_296 IL_85877.10 | |
| IL_4V6K_055 | 1/AB/1437:1440, 1/AB/1551:1555 | tSH-tHW Not in a motif group | homologous IL_5J7L_297 IL_08757.3 | |
| IL_4V6K_056 | 1/AB/1468:1471, 1/AB/1520:1524 | No text annotation Not in a motif group | homologous IL_5J7L_299 IL_68574.2 | |
| IL_4V6K_057 | 1/AB/1474:1478, 1/AB/1513:1517 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_300 IL_39521.5 | |
| IL_4V6K_058 | 1/AB/1480:1483, 1/AB/1506:1511 | No text annotation Not in a motif group | ||
| IL_4V6K_059 | 1/AB/1489:1491, 1/AB/1499:1500 | Single bulged A Not in a motif group | homologous IL_7RQB_062 IL_40508.4 | |
| IL_4V6K_060 | 1/AB/1526:1529, 1/AB/1542:1546 | UAA/GAN variation Not in a motif group | homologous IL_5J7L_303 IL_81389.2 | |
| IL_4V6K_061 | 1/AB/1651:1656, 1/AB/2004:2006 | No text annotation Not in a motif group | homologous IL_5J7L_304 IL_12566.2 | |
| IL_4V6K_062 | 1/AB/1663:1665, 1/AB/1995:1997 | Isolated tWW turn Not in a motif group | homologous IL_7RQB_065 IL_54997.5 | |
| IL_4V6K_063 | 1/AB/1666:1669, 1/AB/1993:1994 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4WF9_064 IL_70995.6 | |
| IL_4V6K_064 | 1/AB/1669:1674, 1/AB/1990:1993 | Intercalated tWH Not in a motif group | geometric IL_7RQB_067 IL_01312.13 | |
| IL_4V6K_065 | 1/AB/1686:1691, 1/AB/1696:1702 | tSH-tSH-tHH-tHS Not in a motif group | homologous IL_7A0S_063 IL_66584.5 | |
| IL_4V6K_066 | 1/AB/1712:1718, 1/AB/1742:1746 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_309 IL_88269.2 | |
| IL_4V6K_067 | 1/AB/1720:1724, 1/AB/1736:1740 | Triple sheared Not in a motif group | homologous IL_5J7L_310 IL_56467.6 | |
| IL_4V6K_068 | 1/AB/1727:1728, 1/AB/1731:1733 | Single bulged C Not in a motif group | homologous IL_5J7L_311 IL_61258.10 | |
| IL_4V6K_069 | 1/AB/1770:1771, 1/AB/1980:1982 | Single bulged A Not in a motif group | homologous IL_5J7L_312 IL_80007.16 | |
| IL_4V6K_070 | 1/AB/1798:1804, 1/AB/1813:1821 | No text annotation Not in a motif group | ||
| IL_4V6K_071 | 1/AB/1837:1840, 1/AB/1902:1903 | No text annotation Not in a motif group | homologous IL_4WF9_070 NA | |
| IL_4V6K_072 | 1/AB/1841:1842, 1/AB/1898:1901 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_4WF9_071 IL_13730.12 | |
| IL_4V6K_073 | 1/AB/1846:1849, 1/AB/1893:1894 | Minor groove platform Not in a motif group | homologous IL_7RQB_073 IL_06437.11 | |
| IL_4V6K_074 | 1/AB/1864:1867, 1/AB/1874:1878 | UAA/GAN related Not in a motif group | homologous IL_5J7L_317 IL_81389.2 | |
| IL_4V6K_075 | 1/AB/1933:1934, 1/AB/1964:1967 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_318 IL_69632.1 | |
| IL_4V6K_076 | 1/AB/1934:1945, 1/AB/1961:1964 | No text annotation Not in a motif group | ||
| IL_4V6K_077 | 1/AB/2050:2052, 1/AB/2617:2618 | Major groove platform Not in a motif group | homologous IL_7RQB_078 IL_80663.10 | |
| IL_4V6K_078 | 1/AB/2054:2056, 1/AB/2612:2615 | No text annotation Not in a motif group | ||
| IL_4V6K_079 | 1/AB/2064:2066, 1/AB/2444:2446 | No text annotation Not in a motif group | homologous IL_5J7L_322 NA | |
| IL_4V6K_080 | 1/AB/2067:2070, 1/AB/2441:2443 | No text annotation Not in a motif group | homologous IL_5J7L_323 NA | |
| IL_4V6K_081 | 1/AB/2070:2071, 1/AB/2438:2441 | Minor groove platform Not in a motif group | geometric IL_7RQB_081 IL_06437.11 | |
| IL_4V6K_082 | 1/AB/2081:2083, 1/AB/2236:2239 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_5J7L_325 IL_38958.6 | |
| IL_4V6K_083 | 1/AB/2085:2087, 1/AB/2232:2234 | No text annotation Not in a motif group | homologous IL_7RQB_083 IL_01312.13 | |
| IL_4V6K_084 | 1/AB/2103:2105, 1/AB/2184:2186 | CC cWW Not in a motif group | geometric IL_4J39_001 IL_42589.6 | |
| IL_4V6K_085 | 1/AB/2107:2110, 1/AB/2179:2182 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_1D4R_001 IL_85877.10 | |
| IL_4V6K_086 | 1/AB/2110:2120, 1/AB/2178:2179 | No text annotation Not in a motif group | ||
| IL_4V6K_087 | 1/AB/2202:2204, 1/AB/2220:2221 | No text annotation Not in a motif group | ||
| IL_4V6K_088 | 1/AB/2350:2353, 1/AB/2364:2367 | Double sheared Not in a motif group | homologous IL_7RQB_089 IL_09705.7 | |
| IL_4V6K_089 | 1/AB/2401:2403, 1/AB/2414:2415 | Major groove platform Not in a motif group | homologous IL_7A0S_082 IL_80663.10 | |
| IL_4V6K_090 | 1/AB/2456:2459, 1/AB/2493:2495 | Decoding loop related Not in a motif group | geometric IL_3C3Z_002 IL_04038.4 | |
| IL_4V6K_091 | 1/AB/2459:2461, 1/AB/2489:2493 | Major groove minor groove platform with extra cWW Not in a motif group | homologous IL_5J7L_337 IL_96042.4 | |
| IL_4V6K_092 | 1/AB/2466:2470, 1/AB/2480:2484 | Triple sheared Not in a motif group | homologous IL_5J7L_338 IL_56467.6 | |
| IL_4V6K_093 | 1/AB/2507:2509, 1/AB/2579:2582 | No text annotation Not in a motif group | homologous IL_5J7L_339 NA | |
| IL_4V6K_094 | 1/AB/2510:2513, 1/AB/2571:2578 | No text annotation Not in a motif group | ||
| IL_4V6K_095 | 1/AB/2522:2523, 1/AB/2540:2543 | Minor groove platform with intercalation Not in a motif group | homologous IL_4WF9_097 IL_95601.1 | |
| IL_4V6K_096 | 1/AB/2588:2590, 1/AB/2604:2606 | No text annotation Not in a motif group | homologous IL_7RQB_100 NA | |
| IL_4V6K_097 | 1/AB/2591:2592, 1/AB/2601:2603 | Single bulged A Not in a motif group | homologous IL_7RQB_101 IL_80007.16 | |
| IL_4V6K_098 | 1/AB/2636:2640, 1/AB/2774:2782 | tSH-tHS-tHW Not in a motif group | homologous IL_7RQB_102 IL_34907.2 | |
| IL_4V6K_099 | 1/AB/2652:2658, 1/AB/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | homologous IL_5J7L_346 IL_35110.5 | |
| IL_4V6K_100 | 1/AB/2680:2684, 1/AB/2725:2727 | C-loop Not in a motif group | homologous IL_5J7L_347 IL_63596.4 | |
| IL_4V6K_101 | 1/AB/2687:2691, 1/AB/2718:2722 | No text annotation Not in a motif group | homologous IL_5J7L_348 IL_08296.3 | |
| IL_4V6K_102 | 1/AB/2695:2696, 1/AB/2711:2714 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_349 IL_13730.12 | |
| IL_4V6K_103 | 1/AB/2737:2742, 1/AB/2762:2767 | UAA/GAN with extra cWW Not in a motif group | homologous IL_5J7L_350 IL_49767.4 | |
| IL_4V6K_104 | 1/AB/2806:2811, 1/AB/2889:2892 | No text annotation Not in a motif group | geometric IL_5J7L_351 IL_82988.1 | |
| IL_4V6K_105 | 1/AB/2838:2839, 1/AB/2878:2880 | Major groove intercalation Not in a motif group | homologous IL_4WF9_106 IL_02060.4 | |
| IL_4V6K_106 | 1/AB/2843:2846, 1/AB/2870:2874 | No text annotation Not in a motif group | homologous IL_7RQB_109 IL_58764.1 | |
| IL_4V6K_107 | 1/AB/2847:2852, 1/AB/2865:2869 | No text annotation Not in a motif group | homologous IL_7A0S_101 IL_47002.1 | |
| IL_4V6K_108 | 1/BA/30:32, 1/BA/552:553 | Single bulged G Not in a motif group | homologous IL_6CZR_113 IL_59137.10 | |
| IL_4V6K_109 | 1/BA/44:45, 1/BA/396:398 | Single bulged A Not in a motif group | homologous IL_5J7L_002 IL_80007.16 | |
| IL_4V6K_110 | 1/BA/47:52, 1/BA/359:361 | No text annotation Not in a motif group | homologous IL_5J7L_003 IL_34626.4 | |
| IL_4V6K_111 | 1/BA/54:56, 1/BA/356:357 | Minor groove platform Not in a motif group | homologous IL_4LFB_004 IL_06437.11 | |
| IL_4V6K_112 | 1/BA/63:66, 1/BA/103:104 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_005 IL_13730.12 | |
| IL_4V6K_113 | 1/BA/67:69, 1/BA/99:102 | Minor groove platform with extra cWW Not in a motif group | homologous IL_5J7L_006 IL_87332.1 | |
| IL_4V6K_115 | 1/BA/75:76, 1/BA/93:95 | Single bulged G Not in a motif group | geometric IL_5DEA_002 IL_59137.10 | |
| IL_4V6K_116 | 1/BA/128:131, 1/BA/231:233 | No text annotation Not in a motif group | ||
| IL_4V6K_117 | 1/BA/132:136, 1/BA/227:230 | Minor groove platform related Not in a motif group | homologous IL_5J7L_010 IL_58764.1 | |
| IL_4V6K_118 | 1/BA/144:146, 1/BA/176:178 | Isolated cWH basepair Not in a motif group | homologous IL_5J7L_011 IL_42589.6 | |
| IL_4V6K_119 | 1/BA/147:153, 1/BA/168:175 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_5J7L_012 IL_92440.5 | |
| IL_4V6K_121 | 1/BA/242:247, 1/BA/277:284 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_5J7L_014 IL_29549.9 | |
| IL_4V6K_122 | 1/BA/249:252, 1/BA/274:275 | No text annotation Not in a motif group | geometric IL_5Y58_001 IL_98882.3 | |
| IL_4V6K_123 | 1/BA/292:294, 1/BA/303:308 | No text annotation Not in a motif group | ||
| IL_4V6K_124 | 1/BA/367:369, 1/BA/392:393 | Single bulged U Not in a motif group | homologous IL_4LFB_014 IL_83039.11 | |
| IL_4V6K_125 | 1/BA/371:376, 1/BA/387:390 | No text annotation Not in a motif group | ||
| IL_4V6K_126 | 1/BA/409:416, 1/BA/427:433 | No text annotation Not in a motif group | homologous IL_4LFB_017 IL_45257.1 | |
| IL_4V6K_128 | 1/BA/446:450, 1/BA/483:488 | tSH-tHW-tWW Not in a motif group | geometric IL_5J7L_022 IL_98711.1 | |
| IL_4V6K_129 | 1/BA/450:455, 1/BA/477:483 | No text annotation Not in a motif group | homologous IL_5J7L_023 IL_70801.1 | |
| IL_4V6K_130 | 1/BA/504:511, 1/BA/540:541 | SSU/LSU pseudoknot Not in a motif group | homologous IL_6CZR_132 IL_15861.6 | |
| IL_4V6K_131 | 1/BA/515:521, 1/BA/528:536 | No text annotation Not in a motif group | geometric IL_4V88_415 IL_04667.1 | |
| IL_4V6K_132 | 1/BA/569:575, 1/BA/880:881 | No text annotation Not in a motif group | homologous IL_4LFB_022 IL_19222.1 | |
| IL_4V6K_133 | 1/BA/580:584, 1/BA/757:761 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_027 IL_39521.5 | |
| IL_4V6K_134 | 1/BA/594:596, 1/BA/644:645 | Major groove platform Not in a motif group | homologous IL_5J7L_028 IL_80663.10 | |
| IL_4V6K_135 | 1/BA/597:598, 1/BA/640:643 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4LFB_025 IL_09061.4 | |
| IL_4V6K_136 | 1/BA/605:613, 1/BA/627:633 | No text annotation Not in a motif group | ||
| IL_4V6K_137 | 1/BA/654:655, 1/BA/751:754 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_5J7L_031 IL_80663.10 | |
| IL_4V6K_138 | 1/BA/659:660, 1/BA/745:747 | Minor groove platform Not in a motif group | geometric IL_4V88_412 IL_06437.11 | |
| IL_4V6K_139 | 1/BA/662:666, 1/BA/740:743 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_033 IL_85877.10 | |
| IL_4V6K_140 | 1/BA/673:678, 1/BA/712:717 | No text annotation Not in a motif group | geometric IL_5J7L_034 IL_94518.4 | |
| IL_4V6K_141 | 1/BA/684:688, 1/BA/699:706 | Kink-turn Not in a motif group | homologous IL_5J7L_035 IL_90922.1 | |
| IL_4V6K_142 | 1/BA/774:778, 1/BA/804:805 | Left turn Not in a motif group | homologous IL_4LFB_032 IL_19389.4 | |
| IL_4V6K_143 | 1/BA/779:783, 1/BA/799:803 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_037 IL_39521.5 | |
| IL_4V6K_144 | 1/BA/887:894, 1/BA/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4LFB_034 IL_24606.1 | |
| IL_4V6K_145 | 1/BA/922:923, 1/BA/1393:1395 | Single bulged A Not in a motif group | homologous IL_5J7L_039 IL_80007.16 | |
| IL_4V6K_146 | 1/BA/925:928, 1/BA/1389:1391 | No text annotation Not in a motif group | geometric IL_1Y27_001 IL_01312.13 | |
| IL_4V6K_147 | 1/BA/933:935, 1/BA/1380:1384 | Minor groove platform Not in a motif group | homologous IL_5J7L_041 IL_94431.4 | |
| IL_4V6K_148 | 1/BA/952:954, 1/BA/1226:1229 | No text annotation Not in a motif group | geometric IL_4WF9_018 IL_01312.13 | |
| IL_4V6K_149 | 1/BA/993:997, 1/BA/1044:1045 | Minor groove platform Not in a motif group | homologous IL_5J7L_043 IL_94431.4 | |
| IL_4V6K_150 | 1/BA/998:999, 1/BA/1041:1043 | Single stack bend Not in a motif group | homologous IL_5J7L_044 IL_04038.4 | |
| IL_4V6K_151 | 1/BA/1048:1050, 1/BA/1208:1209 | Single bulged U Not in a motif group | geometric IL_3MEI_001 IL_83039.11 | |
| IL_4V6K_152 | 1/BA/1050:1056, 1/BA/1204:1208 | No text annotation Not in a motif group | homologous IL_5J7L_047 NA | |
| IL_4V6K_153 | 1/BA/1057:1058, 1/BA/1199:1203 | Minor groove platform Not in a motif group | homologous IL_4LFB_045 IL_06437.11 | |
| IL_4V6K_154 | 1/BA/1060:1061, 1/BA/1195:1197 | Single bulged A Not in a motif group | homologous IL_5J7L_049 IL_80007.16 | |
| IL_4V6K_155 | 1/BA/1061:1063, 1/BA/1193:1195 | No text annotation Not in a motif group | geometric IL_4LFB_047 IL_01312.13 | |
| IL_4V6K_156 | 1/BA/1124:1128, 1/BA/1144:1149 | No text annotation Not in a motif group | homologous IL_5J7L_051 IL_58346.1 | |
| IL_4V6K_157 | 1/BA/1129:1132, 1/BA/1142:1143 | Minor groove platform Not in a motif group | homologous IL_5J7L_052 IL_94431.4 | |
| IL_4V6K_158 | 1/BA/1158:1162, 1/BA/1174:1181 | No text annotation Not in a motif group | ||
| IL_4V6K_159 | 1/BA/1247:1253, 1/BA/1284:1290 | No text annotation Not in a motif group | homologous IL_5J7L_054 IL_09129.1 | |
| IL_4V6K_160 | 1/BA/1255:1258, 1/BA/1277:1282 | No text annotation Not in a motif group | ||
| IL_4V6K_161 | 1/BA/1259:1263, 1/BA/1272:1276 | Triple sheared Not in a motif group | homologous IL_5J7L_056 IL_56467.6 | |
| IL_4V6K_162 | 1/BA/1303:1308, 1/BA/1329:1334 | No text annotation Not in a motif group | geometric IL_4V88_462 IL_19954.1 | |
| IL_4V6K_163 | 1/BA/1399:1401, 1/BA/1501:1504 | No text annotation Not in a motif group | geometric IL_5J7L_058 IL_36143.2 | |
| IL_4V6K_164 | 1/BA/1401:1404, 1/BA/1497:1501 | No text annotation Not in a motif group | homologous IL_5J7L_059 NA | |
| IL_4V6K_165 | 1/BA/1405:1409, 1/BA/1491:1496 | No text annotation Not in a motif group | homologous IL_4LFB_058 NA | |
| IL_4V6K_166 | 1/BA/1412:1415, 1/BA/1485:1488 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_6CZR_168 IL_85877.10 | |
| IL_4V6K_167 | 1/BA/1416:1420, 1/BA/1480:1484 | No text annotation Not in a motif group | ||
| IL_4V6K_168 | 1/BA/1430:1435, 1/BA/1466:1470 | Triple sheared related Not in a motif group | homologous IL_5J7L_063 IL_64879.1 | |
| IL_4V6K_169 | 1/BA/1440:1442, 1/BA/1460:1461 | Minor groove platform Not in a motif group | homologous IL_5J7L_064 IL_06437.11 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4V6K_114 | Minor groove platform | ||
| IL_4V6K_120 | No text annotation | ||
| IL_4V6K_127 | No text annotation | ||
| IL_4V6K_170 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_4V6K_001 | 1/AA/10:16, 1/AA/68:70, 1/AA/106:110 | No text annotation Not in a motif group | homologous J3_5J7L_049 NA | |
| J3_4V6K_002 | 1/AB/30:31, 1/AB/474:481, 1/AB/509:510 | No text annotation Not in a motif group | homologous J3_7RQB_001 NA | |
| J3_4V6K_003 | 1/AB/56:57, 1/AB/70:76, 1/AB/110:114 | No text annotation Not in a motif group | homologous J3_5J7L_037 NA | |
| J3_4V6K_004 | 1/AB/683:689, 1/AB/773:775, 1/AB/791:794 | No text annotation Not in a motif group | ||
| J3_4V6K_005 | 1/AB/698:700, 1/AB/732:736, 1/AB/760:763 | No text annotation Not in a motif group | ||
| J3_4V6K_006 | 1/AB/1053:1058, 1/AB/1080:1087, 1/AB/1102:1106 | No text annotation Not in a motif group | ||
| J3_4V6K_007 | 1/AB/1298:1303, 1/AB/1625:1627, 1/AB/1639:1642 | No text annotation Not in a motif group | homologous J3_5J7L_041 NA | |
| J3_4V6K_008 | 1/AB/1306:1309, 1/AB/1605:1611, 1/AB/1620:1622 | No text annotation Not in a motif group | homologous J3_7A0S_007 NA | |
| J3_4V6K_009 | 1/AB/2090:2093, 1/AB/2196:2200, 1/AB/2223:2229 | No text annotation Not in a motif group | ||
| J3_4V6K_010 | 1/AB/2295:2299, 1/AB/2317:2323, 1/AB/2332:2337 | No text annotation Not in a motif group | ||
| J3_4V6K_011 | 1/AB/2517:2520, 1/AB/2545:2547, 1/AB/2561:2567 | No text annotation Not in a motif group | homologous J3_5J7L_046 NA | |
| J3_4V6K_012 | 1/AB/2789:2791, 1/AB/2805:2806, 1/AB/2892:2894 | No text annotation Not in a motif group | homologous J3_5J7L_047 NA | |
| J3_4V6K_013 | 1/AB/2812:2815, 1/AB/2831:2836, 1/AB/2882:2888 | No text annotation Not in a motif group | ||
| J3_4V6K_014 | 1/BA/46:47, 1/BA/361:367, 1/BA/393:395 | No text annotation Not in a motif group | ||
| J3_4V6K_015 | 1/BA/586:588, 1/BA/651:654, 1/BA/754:755 | No text annotation Not in a motif group | ||
| J3_4V6K_016 | 1/BA/672:673, 1/BA/717:725, 1/BA/732:734 | No text annotation Not in a motif group | homologous J3_5J7L_003 NA | |
| J3_4V6K_017 | 1/BA/826:829, 1/BA/857:861, 1/BA/868:874 | No text annotation Not in a motif group | homologous J3_5J7L_004 NA | |
| J3_4V6K_018 | 1/BA/936:939, 1/BA/1344:1350, 1/BA/1372:1379 | No text annotation Not in a motif group | homologous J3_4LFB_002 NA | |
| J3_4V6K_019 | 1/BA/943:946, 1/BA/1235:1237, 1/BA/1337:1340 | No text annotation Not in a motif group | homologous J3_5J7L_005 NA | |
| J3_4V6K_020 | 1/BA/954:962, 1/BA/973:984, 1/BA/1221:1226 | No text annotation Not in a motif group | ||
| J3_4V6K_021 | 1/BA/990:993, 1/BA/1045:1047, 1/BA/1210:1215 | No text annotation Not in a motif group | ||
| J3_4V6K_022 | 1/BA/1003:1006, 1/BA/1023:1027, 1/BA/1034:1037 | No text annotation Not in a motif group | ||
| J3_4V6K_023 | 1/BA/1063:1068, 1/BA/1107:1114, 1/BA/1186:1193 | No text annotation Not in a motif group | ||
| J3_4V6K_024 | 1/BA/1073:1074, 1/BA/1083:1087, 1/BA/1098:1102 | No text annotation Not in a motif group | homologous J3_5J7L_009 NA | |
| J3_4V6K_025 | 1/BA/1116:1118, 1/BA/1155:1158, 1/BA/1181:1184 | No text annotation Not in a motif group | homologous J3_5J7L_010 NA | |
| J3_4V6K_026 | 1/BA/1237:1241, 1/BA/1296:1303, 1/BA/1334:1337 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
Coloring options: