4V4T Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4V4T_001 | 1/AA/10:24 | No text annotation Not in a motif group | ||
| HL_4V4T_003 | 1/AA/158:163 | GNRA Not in a motif group | homologous HL_4LFB_003 HL_42097.1 | |
| HL_4V4T_004 | 1/AA/190B:190G | No text annotation Not in a motif group | homologous HL_4LFB_004 HL_10278.1 | |
| HL_4V4T_005 | 1/AA/201:216 | No text annotation Not in a motif group | homologous HL_4LFB_005 HL_56691.2 | |
| HL_4V4T_006 | 1/AA/259:267 | No text annotation Not in a motif group | homologous HL_4LFB_006 HL_69023.2 | |
| HL_4V4T_007 | 1/AA/296:301 | GNRA Not in a motif group | homologous HL_6CZR_078 HL_42097.1 | |
| HL_4V4T_008 | 1/AA/320:333 | No text annotation Not in a motif group | homologous HL_6CZR_079 HL_81205.2 | |
| HL_4V4T_010 | 1/AA/379:384 | No text annotation Not in a motif group | ||
| HL_4V4T_011 | 1/AA/419:424 | UNCG Not in a motif group | homologous HL_5J7L_011 HL_03562.2 | |
| HL_4V4T_012 | 1/AA/458:474 | No text annotation Not in a motif group | homologous HL_4LFB_012 HL_43656.2 | |
| HL_4V4T_013 | 1/AA/522:527 | No text annotation Not in a motif group | geometric HL_4WF9_011 HL_75407.1 | |
| HL_4V4T_014 | 1/AA/617:623 | No text annotation Not in a motif group | homologous HL_5J7L_014 HL_26881.1 | |
| HL_4V4T_015 | 1/AA/689:698 | No text annotation Not in a motif group | homologous HL_4LFB_015 HL_12326.1 | |
| HL_4V4T_016 | 1/AA/726:731 | Other HL Not in a motif group | homologous HL_5J7L_016 HL_87030.2 | |
| HL_4V4T_017 | 1/AA/786:796 | No text annotation Not in a motif group | homologous HL_5J7L_017 HL_12326.1 | |
| HL_4V4T_018 | 1/AA/838:848 | No text annotation Not in a motif group | homologous HL_6CZR_089 HL_53837.1 | |
| HL_4V4T_020 | 1/AA/897:902 | GNRA Not in a motif group | homologous HL_4LFB_020 HL_42097.1 | |
| HL_4V4T_021 | 1/AA/963:972 | No text annotation Not in a motif group | homologous HL_5J7L_021 NA | |
| HL_4V4T_022 | 1/AA/1011:1018 | No text annotation Not in a motif group | homologous HL_6CZR_093 NA | |
| HL_4V4T_023 | 1/AA/1076:1081 | GNRA Not in a motif group | homologous HL_4LFB_024 HL_42097.1 | |
| HL_4V4T_024 | 1/AA/1089:1096 | No text annotation Not in a motif group | homologous HL_6CZR_096 HL_71554.2 | |
| HL_4V4T_025 | 1/AA/1134:1140 | No text annotation Not in a motif group | homologous HL_6CZR_097 NA | |
| HL_4V4T_026 | 1/AA/1165:1171 | GNRA Not in a motif group | homologous HL_4LFB_027 HL_42097.1 | |
| HL_4V4T_027 | 1/AA/1265:1270 | No text annotation Not in a motif group | homologous HL_6CZR_099 NA | |
| HL_4V4T_028 | 1/AA/1314:1323 | No text annotation Not in a motif group | homologous HL_4LFB_029 HL_89380.2 | |
| HL_4V4T_029 | 1/AA/1356:1366 | No text annotation Not in a motif group | ||
| HL_4V4T_030 | 1/AA/1449:1454 | UNCG Not in a motif group | homologous HL_4LFB_031 HL_03562.2 | |
| HL_4V4T_031 | 1/AA/1515:1520 | No text annotation Not in a motif group | homologous HL_4LFB_032 NA | |
| HL_4V4T_032 | 1/AV/13:22 | No text annotation Not in a motif group | homologous HL_6PMO_003 NA | |
| HL_4V4T_033 | 1/AV/31:39 | tRNA anticodon loop Not in a motif group | homologous HL_4WT8_216 HL_53597.2 | |
| HL_4V4T_034 | 1/AV/53:61 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_1U0B_003 HL_71309.1 | |
| HL_4V4T_035 | 1/AW/13:22 | No text annotation Not in a motif group | homologous HL_3WFS_001 NA | |
| HL_4V4T_036 | 1/AW/30:40 | No text annotation Not in a motif group | homologous HL_5IB8_208 NA | |
| HL_4V4T_037 | 1/AW/53:61 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_4RDX_003 HL_22280.1 | |
| HL_4V4T_038 | 1/BA/58:69 | No text annotation Not in a motif group | ||
| HL_4V4T_039 | 1/BA/87:95 | No text annotation Not in a motif group | homologous HL_7RQB_002 HL_96598.1 | |
| HL_4V4T_040 | 1/BA/123:128 | No text annotation Not in a motif group | homologous HL_7RQB_003 HL_75407.1 | |
| HL_4V4T_041 | 1/BA/134:145 | No text annotation Not in a motif group | ||
| HL_4V4T_042 | 1/BA/194:201 | No text annotation Not in a motif group | geometric HL_4WF9_006 HL_06192.2 | |
| HL_4V4T_043 | 1/BA/225:230 | No text annotation Not in a motif group | homologous HL_4WF9_007 HL_02862.2 | |
| HL_4V4T_044 | 1/BA/246:252 | No text annotation Not in a motif group | homologous HL_4WF9_008 HL_67216.7 | |
| HL_4V4T_045 | 1/BA/270I:270Q | No text annotation Not in a motif group | ||
| HL_4V4T_046 | 1/BA/305:312 | No text annotation Not in a motif group | homologous HL_7RQB_010 HL_89380.2 | |
| HL_4V4T_047 | 1/BA/319:323 | No text annotation Not in a motif group | homologous HL_7A0S_011 HL_75407.1 | |
| HL_4V4T_048 | 1/BA/327:335 | No text annotation Not in a motif group | homologous HL_4WF9_012 HL_08002.8 | |
| HL_4V4T_049 | 1/BA/382:392 | No text annotation Not in a motif group | homologous HL_7RQB_013 HL_91503.4 | |
| HL_4V4T_050 | 1/BA/410:417 | No text annotation Not in a motif group | homologous HL_7RQB_014 HL_96598.1 | |
| HL_4V4T_051 | 1/BA/462:467 | No text annotation Not in a motif group | homologous HL_7RQB_015 HL_42097.1 | |
| HL_4V4T_052 | 1/BA/487:493 | No text annotation Not in a motif group | ||
| HL_4V4T_053 | 1/BA/543:550 | No text annotation Not in a motif group | homologous HL_7RQB_017 NA | |
| HL_4V4T_054 | 1/BA/564:577 | No text annotation Not in a motif group | ||
| HL_4V4T_055 | 1/BA/605:623 | No text annotation Not in a motif group | ||
| HL_4V4T_056 | 1/BA/629:634 | No text annotation Not in a motif group | homologous HL_7RQB_020 HL_42097.1 | |
| HL_4V4T_057 | 1/BA/712:719 | No text annotation Not in a motif group | ||
| HL_4V4T_058 | 1/BA/744:753 | No text annotation Not in a motif group | homologous HL_7RQB_023 HL_39334.6 | |
| HL_4V4T_059 | 1/BA/779:785 | No text annotation Not in a motif group | homologous HL_7A0S_023 HL_27930.1 | |
| HL_4V4T_060 | 1/BA/826:831 | No text annotation Not in a motif group | homologous HL_7A0S_024 HL_64365.1 | |
| HL_4V4T_061 | 1/BA/884:892 | No text annotation Not in a motif group | ||
| HL_4V4T_062 | 1/BA/955:962 | No text annotation Not in a motif group | homologous HL_7A0S_026 HL_42097.1 | |
| HL_4V4T_063 | 1/BA/978:985 | No text annotation Not in a motif group | homologous HL_7A0S_027 HL_64430.2 | |
| HL_4V4T_064 | 1/BA/1062:1076 | No text annotation Not in a motif group | ||
| HL_4V4T_065 | 1/BA/1092:1099 | No text annotation Not in a motif group | ||
| HL_4V4T_066 | 1/BA/1171:1178 | No text annotation Not in a motif group | geometric HL_2Y8W_001 HL_01057.1 | |
| HL_4V4T_067 | 1/BA/1221:1228 | No text annotation Not in a motif group | ||
| HL_4V4T_068 | 1/BA/1281:1289 | No text annotation Not in a motif group | homologous HL_7A0S_032 HL_89380.2 | |
| HL_4V4T_069 | 1/BA/1324:1330 | No text annotation Not in a motif group | homologous HL_7A0S_033 HL_46680.1 | |
| HL_4V4T_070 | 1/BA/1363:1368 | No text annotation Not in a motif group | homologous HL_7RQB_035 HL_87030.2 | |
| HL_4V4T_071 | 1/BA/1389:1398 | No text annotation Not in a motif group | homologous HL_4WF9_035 HL_69023.2 | |
| HL_4V4T_072 | 1/BA/1450:1461 | No text annotation Not in a motif group | ||
| HL_4V4T_073 | 1/BA/1488:1501 | No text annotation Not in a motif group | ||
| HL_4V4T_074 | 1/BA/1612:1619 | No text annotation Not in a motif group | homologous HL_4WF9_038 HL_64430.2 | |
| HL_4V4T_075 | 1/BA/1630:1636 | No text annotation Not in a motif group | ||
| HL_4V4T_076 | 1/BA/1691:1696 | UNCG Not in a motif group | geometric HL_5J7L_030 HL_03562.2 | |
| HL_4V4T_077 | 1/BA/1716:1743 | No text annotation Not in a motif group | ||
| HL_4V4T_078 | 1/BA/1752:1756 | No text annotation Not in a motif group | homologous HL_7RQB_044 HL_76539.2 | |
| HL_4V4T_079 | 1/BA/1777:1787 | No text annotation Not in a motif group | homologous HL_4WF9_043 HL_43613.5 | |
| HL_4V4T_080 | 1/BA/1806:1811 | No text annotation Not in a motif group | ||
| HL_4V4T_081 | 1/BA/1864:1878 | No text annotation Not in a motif group | homologous HL_7RQB_047 HL_42097.1 | |
| HL_4V4T_082 | 1/BA/1910:1920 | No text annotation Not in a motif group | geometric HL_1WZ2_007 HL_10278.1 | |
| HL_4V4T_083 | 1/BA/1949:1957 | No text annotation Not in a motif group | homologous HL_7A0S_048 HL_51824.1 | |
| HL_4V4T_084 | 1/BA/2027:2036 | No text annotation Not in a motif group | homologous HL_7A0S_049 HL_90642.6 | |
| HL_4V4T_086 | 1/BA/2209:2215 | No text annotation Not in a motif group | ||
| HL_4V4T_087 | 1/BA/2247:2257 | No text annotation Not in a motif group | ||
| HL_4V4T_088 | 1/BA/2264:2276 | No text annotation Not in a motif group | homologous HL_7A0S_053 HL_19870.6 | |
| HL_4V4T_089 | 1/BA/2304:2312 | No text annotation Not in a motif group | ||
| HL_4V4T_090 | 1/BA/2324:2331 | No text annotation Not in a motif group | homologous HL_7RQB_056 HL_12078.2 | |
| HL_4V4T_091 | 1/BA/2355:2362 | No text annotation Not in a motif group | homologous HL_4WF9_053 HL_09136.1 | |
| HL_4V4T_092 | 1/BA/2374:2379 | GNRA Not in a motif group | homologous HL_4WF9_054 HL_42097.1 | |
| HL_4V4T_093 | 1/BA/2404:2413 | No text annotation Not in a motif group | geometric HL_7A0S_058 HL_30784.2 | |
| HL_4V4T_094 | 1/BA/2471:2479 | No text annotation Not in a motif group | geometric HL_4V9F_062 HL_06192.2 | |
| HL_4V4T_095 | 1/BA/2528:2535 | No text annotation Not in a motif group | homologous HL_7RQB_061 HL_88526.2 | |
| HL_4V4T_096 | 1/BA/2549:2559 | No text annotation Not in a motif group | ||
| HL_4V4T_097 | 1/BA/2592:2601 | No text annotation Not in a motif group | ||
| HL_4V4T_098 | 1/BA/2651:2669 | No text annotation Not in a motif group | ||
| HL_4V4T_099 | 1/BA/2699:2708 | No text annotation Not in a motif group | ||
| HL_4V4T_100 | 1/BA/2745:2759 | No text annotation Not in a motif group | ||
| HL_4V4T_101 | 1/BA/2792:2803 | No text annotation Not in a motif group | ||
| HL_4V4T_102 | 1/BA/2819:2827 | No text annotation Not in a motif group | homologous HL_7A0S_067 HL_27930.1 | |
| HL_4V4T_103 | 1/BA/2856:2861 | No text annotation Not in a motif group | ||
| HL_4V4T_104 | 1/BB/33:49 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4V4T_002 | No text annotation | ||
| HL_4V4T_009 | UNCG | ||
| HL_4V4T_019 | GNRA | ||
| HL_4V4T_085 | No text annotation | ||
| HL_4V4T_105 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4V4T_001 | 1/AA/30:33, 1/AA/551:553 | No text annotation Not in a motif group | ||
| IL_4V4T_002 | 1/AA/44:46, 1/AA/395:398 | No text annotation Not in a motif group | geometric IL_4V88_424 IL_95997.1 | |
| IL_4V4T_003 | 1/AA/47:52, 1/AA/359:361 | No text annotation Not in a motif group | geometric IL_5J7L_003 IL_11178.1 | |
| IL_4V4T_004 | 1/AA/54:56, 1/AA/356:357 | Minor groove platform Not in a motif group | homologous IL_4LFB_004 IL_93353.1 | |
| IL_4V4T_005 | 1/AA/63:66, 1/AA/103:104 | Multiple bulged bases Not in a motif group | homologous IL_6CZR_117 IL_76389.1 | |
| IL_4V4T_006 | 1/AA/67:69, 1/AA/99:102 | No text annotation Not in a motif group | homologous IL_4LFB_006 IL_95997.1 | |
| IL_4V4T_007 | 1/AA/129:131, 1/AA/231:232 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_007 IL_16396.2 | |
| IL_4V4T_008 | 1/AA/132:137, 1/AA/226:230 | No text annotation Not in a motif group | ||
| IL_4V4T_009 | 1/AA/148:153, 1/AA/168:174 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_4LFB_009 IL_39753.1 | |
| IL_4V4T_010 | 1/AA/186:188, 1/AA/190K:191 | No text annotation Not in a motif group | homologous IL_4LFB_010 IL_95997.1 | |
| IL_4V4T_011 | 1/AA/242:247, 1/AA/277:284 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_5J7L_014 IL_45067.2 | |
| IL_4V4T_012 | 1/AA/248:252, 1/AA/274:276 | No text annotation Not in a motif group | ||
| IL_4V4T_013 | 1/AA/291:293, 1/AA/304:309 | No text annotation Not in a motif group | ||
| IL_4V4T_014 | 1/AA/367:369, 1/AA/392:393 | Single bulged U Not in a motif group | geometric IL_5J7L_017 IL_83039.13 | |
| IL_4V4T_015 | 1/AA/371:375, 1/AA/389:390 | C-loop Not in a motif group | geometric IL_6CZR_127 IL_75255.1 | |
| IL_4V4T_016 | 1/AA/375:376, 1/AA/387:389 | Single bulged G Not in a motif group | homologous IL_4LFB_016 IL_00225.2 | |
| IL_4V4T_017 | 1/AA/409:416, 1/AA/427:433 | No text annotation Not in a motif group | homologous IL_4LFB_017 IL_28026.1 | |
| IL_4V4T_018 | 1/AA/446:450, 1/AA/483:488 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_6CZR_130 IL_88269.3 | |
| IL_4V4T_019 | 1/AA/450:455, 1/AA/477:483 | No text annotation Not in a motif group | geometric IL_4LFB_019 IL_11882.1 | |
| IL_4V4T_020 | 1/AA/504:512, 1/AA/539:541 | No text annotation Not in a motif group | ||
| IL_4V4T_021 | 1/AA/515:521, 1/AA/528:536 | No text annotation Not in a motif group | ||
| IL_4V4T_022 | 1/AA/580:584, 1/AA/757:761 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_023 IL_17136.1 | |
| IL_4V4T_023 | 1/AA/594:596, 1/AA/644:645 | Major groove platform Not in a motif group | homologous IL_4LFB_024 IL_27635.1 | |
| IL_4V4T_024 | 1/AA/597:598, 1/AA/640:643 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4LFB_025 IL_09061.6 | |
| IL_4V4T_025 | 1/AA/605:612, 1/AA/628:633 | No text annotation Not in a motif group | ||
| IL_4V4T_026 | 1/AA/654:655, 1/AA/751:754 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_5J7L_031 IL_50694.2 | |
| IL_4V4T_027 | 1/AA/657:658, 1/AA/747:749 | Major groove platform Not in a motif group | homologous IL_4LFB_028 IL_27635.1 | |
| IL_4V4T_028 | 1/AA/661:666, 1/AA/740:744 | No text annotation Not in a motif group | ||
| IL_4V4T_029 | 1/AA/673:677, 1/AA/713:717 | No text annotation Not in a motif group | ||
| IL_4V4T_030 | 1/AA/683:688, 1/AA/699:707 | Kink-turn Not in a motif group | homologous IL_4LFB_031 IL_37722.1 | |
| IL_4V4T_031 | 1/AA/774:778, 1/AA/804:805 | Left turn Not in a motif group | homologous IL_4LFB_032 IL_29346.1 | |
| IL_4V4T_032 | 1/AA/779:783, 1/AA/799:803 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_037 IL_17136.1 | |
| IL_4V4T_033 | 1/AA/887:894, 1/AA/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_5J7L_038 IL_24606.2 | |
| IL_4V4T_035 | 1/AA/925:927, 1/AA/1390:1391 | Single bulged G Not in a motif group | homologous IL_4LFB_036 IL_00225.2 | |
| IL_4V4T_036 | 1/AA/933:935, 1/AA/1380:1384 | Minor groove platform Not in a motif group | homologous IL_5J7L_041 IL_47078.1 | |
| IL_4V4T_038 | 1/AA/1048:1050, 1/AA/1208:1209 | No text annotation Not in a motif group | homologous IL_6CZR_152 NA | |
| IL_4V4T_039 | 1/AA/1052:1056, 1/AA/1204:1206 | Isolated cWS basepair Not in a motif group | homologous IL_4LFB_044 IL_76319.2 | |
| IL_4V4T_040 | 1/AA/1057:1058, 1/AA/1199:1203 | Minor groove platform Not in a motif group | homologous IL_4LFB_045 IL_93353.1 | |
| IL_4V4T_041 | 1/AA/1060:1061, 1/AA/1195:1197 | Single bulged U Not in a motif group | homologous IL_4LFB_046 IL_83039.13 | |
| IL_4V4T_042 | 1/AA/1061:1063, 1/AA/1193:1195 | No text annotation Not in a motif group | geometric IL_4LFB_047 IL_95997.1 | |
| IL_4V4T_043 | 1/AA/1124:1127, 1/AA/1145:1149 | No text annotation Not in a motif group | ||
| IL_4V4T_044 | 1/AA/1127:1132, 1/AA/1142:1145 | No text annotation Not in a motif group | ||
| IL_4V4T_045 | 1/AA/1247:1253, 1/AA/1284:1290 | No text annotation Not in a motif group | homologous IL_6CZR_160 IL_09129.1 | |
| IL_4V4T_046 | 1/AA/1255:1258, 1/AA/1277:1282 | No text annotation Not in a motif group | ||
| IL_4V4T_047 | 1/AA/1259:1262, 1/AA/1273:1276 | Double sheared Not in a motif group | geometric IL_4V88_471 IL_09705.9 | |
| IL_4V4T_048 | 1/AA/1303:1308, 1/AA/1329:1334 | No text annotation Not in a motif group | homologous IL_4LFB_055 IL_19954.2 | |
| IL_4V4T_049 | 1/AA/1399:1401, 1/AA/1501:1504 | No text annotation Not in a motif group | homologous IL_4LFB_056 NA | |
| IL_4V4T_050 | 1/AA/1401:1404, 1/AA/1497:1501 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_99670.1 | |
| IL_4V4T_051 | 1/AA/1405:1407, 1/AA/1494:1496 | No text annotation Not in a motif group | geometric IL_4WF9_020 IL_95997.1 | |
| IL_4V4T_052 | 1/AA/1407:1409, 1/AA/1491:1494 | No text annotation Not in a motif group | geometric IL_5TBW_378 IL_95997.1 | |
| IL_4V4T_053 | 1/AA/1412:1414, 1/AA/1486:1488 | No text annotation Not in a motif group | homologous IL_4LFB_059 IL_95997.1 | |
| IL_4V4T_054 | 1/AA/1416:1419, 1/AA/1481:1484 | Double sheared Not in a motif group | homologous IL_5J7L_062 IL_09705.9 | |
| IL_4V4T_055 | 1/AA/1431:1435, 1/AA/1466:1469 | UAA/GAN variation Not in a motif group | geometric IL_4LFB_062 IL_07235.1 | |
| IL_4V4T_056 | 1/AA/1435:1437, 1/AA/1464:1466 | No text annotation Not in a motif group | homologous IL_6CZR_171 IL_95997.1 | |
| IL_4V4T_057 | 1/AA/1440:1447, 1/AA/1459:1461 | No text annotation Not in a motif group | homologous IL_4LFB_064 IL_92788.2 | |
| IL_4V4T_058 | 1/BA/24:30, 1/BA/510:516 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_7RQB_001 IL_66414.6 | |
| IL_4V4T_059 | 1/BA/35:36, 1/BA/444:445 | No text annotation Not in a motif group | ||
| IL_4V4T_060 | 1/BA/36:37, 1/BA/442:444 | Single bulged A Not in a motif group | geometric IL_7A0S_002 IL_37497.2 | |
| IL_4V4T_061 | 1/BA/43:44, 1/BA/434:436 | Minor groove platform Not in a motif group | homologous IL_5J7L_247 IL_42622.2 | |
| IL_4V4T_062 | 1/BA/81:85, 1/BA/97:105 | Kink-turn Not in a motif group | homologous IL_7A0S_004 IL_45067.2 | |
| IL_4V4T_063 | 1/BA/183:184, 1/BA/212:214 | Single stack bend Not in a motif group | homologous IL_4WF9_007 IL_76488.2 | |
| IL_4V4T_064 | 1/BA/188:194, 1/BA/201:208 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_006 IL_04346.7 | |
| IL_4V4T_065 | 1/BA/239:245, 1/BA/253:258 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_007 IL_76042.2 | |
| IL_4V4T_066 | 1/BA/273:273E, 1/BA/363A:364 | No text annotation Not in a motif group | ||
| IL_4V4T_067 | 1/BA/286:292, 1/BA/348:355 | No text annotation Not in a motif group | ||
| IL_4V4T_068 | 1/BA/292:296, 1/BA/342:348 | No text annotation Not in a motif group | ||
| IL_4V4T_069 | 1/BA/672:678, 1/BA/799:808 | No text annotation Not in a motif group | ||
| IL_4V4T_070 | 1/BA/697:698, 1/BA/763:765 | Single bulged A Not in a motif group | geometric IL_7A0S_016 IL_37497.2 | |
| IL_4V4T_071 | 1/BA/702:703, 1/BA/728:730 | Single bulged G Not in a motif group | homologous IL_4WF9_023 IL_00225.2 | |
| IL_4V4T_072 | 1/BA/703:707, 1/BA/724:728 | Triple sheared Not in a motif group | geometric IL_7RQB_021 IL_56467.8 | |
| IL_4V4T_073 | 1/BA/737:741, 1/BA/756:759 | No text annotation Not in a motif group | ||
| IL_4V4T_074 | 1/BA/837:838, 1/BA/940:942 | Single stack bend Not in a motif group | homologous IL_7A0S_022 IL_92001.1 | |
| IL_4V4T_075 | 1/BA/844:850, 1/BA/928:934 | No text annotation Not in a motif group | ||
| IL_4V4T_076 | 1/BA/858:862, 1/BA/915:919 | 5x5 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | homologous IL_7RQB_027 IL_38862.1 | |
| IL_4V4T_077 | 1/BA/862:863, 1/BA/913:915 | Minor groove platform Not in a motif group | geometric IL_4V9F_034 IL_42622.2 | |
| IL_4V4T_078 | 1/BA/864:868, 1/BA/909:912 | C-loop Not in a motif group | homologous IL_7A0S_029 IL_02509.1 | |
| IL_4V4T_079 | 1/BA/875:879, 1/BA/898:902 | Triple sheared Not in a motif group | homologous IL_5J7L_274 IL_56467.8 | |
| IL_4V4T_080 | 1/BA/880:882, 1/BA/894:897 | No text annotation Not in a motif group | ||
| IL_4V4T_081 | 1/BA/952:954, 1/BA/963:965 | No text annotation Not in a motif group | homologous IL_7RQB_034 IL_95997.1 | |
| IL_4V4T_082 | 1/BA/992:996, 1/BA/1159:1162 | No text annotation Not in a motif group | geometric IL_6AZ4_001 IL_69145.1 | |
| IL_4V4T_083 | 1/BA/998:1002, 1/BA/1153:1157 | UAA/GAN Not in a motif group | homologous IL_7RQB_036 IL_89002.2 | |
| IL_4V4T_084 | 1/BA/1004:1011, 1/BA/1150:1151 | SSU/LSU pseudoknot Not in a motif group | geometric IL_4WF9_037 IL_15861.7 | |
| IL_4V4T_085 | 1/BA/1011:1013, 1/BA/1149:1150 | Single bulged U Not in a motif group | homologous IL_7A0S_035 IL_83039.13 | |
| IL_4V4T_086 | 1/BA/1018:1030, 1/BA/1124:1144 | No text annotation Not in a motif group | ||
| IL_4V4T_087 | 1/BA/1031:1034, 1/BA/1121:1123 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_7RQB_041 IL_82068.2 | |
| IL_4V4T_088 | 1/BA/1042:1051, 1/BA/1108:1113 | No text annotation Not in a motif group | ||
| IL_4V4T_089 | 1/BA/1059:1062, 1/BA/1076:1079 | No text annotation Not in a motif group | ||
| IL_4V4T_090 | 1/BA/1196:1199, 1/BA/1246:1250 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_429 IL_30621.2 | |
| IL_4V4T_091 | 1/BA/1200:1208, 1/BA/1238:1245 | No text annotation Not in a motif group | ||
| IL_4V4T_092 | 1/BA/1208:1215, 1/BA/1234:1238 | Kink-turn Not in a motif group | homologous IL_7RQB_047 IL_70923.2 | |
| IL_4V4T_093 | 1/BA/1219:1221, 1/BA/1228:1230 | Stack and bulge Not in a motif group | geometric IL_2ET8_001 IL_82842.2 | |
| IL_4V4T_094 | 1/BA/1319:1323, 1/BA/1331:1333 | C-loop Not in a motif group | homologous IL_7RQB_051 IL_63596.6 | |
| IL_4V4T_095 | 1/BA/1351:1355, 1/BA/1376:1380 | UAA/GAN Not in a motif group | homologous IL_7RQB_052 IL_89002.2 | |
| IL_4V4T_096 | 1/BA/1356:1361, 1/BA/1370:1375 | tSH-tHW-tHS-cWW Not in a motif group | geometric IL_1LNT_002 IL_76308.4 | |
| IL_4V4T_097 | 1/BA/1414:1423, 1/BA/1574:1588 | No text annotation Not in a motif group | ||
| IL_4V4T_098 | 1/BA/1432:1435, 1/BA/1557:1561 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_431 IL_30621.2 | |
| IL_4V4T_099 | 1/BA/1436:1440, 1/BA/1551:1556 | No text annotation Not in a motif group | ||
| IL_4V4T_100 | 1/BA/1448:1450, 1/BA/1461:1463 | No text annotation Not in a motif group | ||
| IL_4V4T_101 | 1/BA/1651:1656, 1/BA/2004:2006 | No text annotation Not in a motif group | homologous IL_5J7L_304 IL_12566.2 | |
| IL_4V4T_102 | 1/BA/1662:1665, 1/BA/1995:1998 | No text annotation Not in a motif group | ||
| IL_4V4T_103 | 1/BA/1666:1674, 1/BA/1990:1994 | No text annotation Not in a motif group | ||
| IL_4V4T_104 | 1/BA/1686:1691, 1/BA/1696:1702 | tSH-tSH-tHH-tHS Not in a motif group | homologous IL_7RQB_068 IL_65969.2 | |
| IL_4V4T_105 | 1/BA/1770:1771, 1/BA/1980:1982 | Single bulged A Not in a motif group | homologous IL_7RQB_069 IL_37497.2 | |
| IL_4V4T_106 | 1/BA/1798:1804, 1/BA/1813:1821 | Kink-turn related Not in a motif group | homologous IL_4WF9_069 IL_17069.3 | |
| IL_4V4T_107 | 1/BA/1837:1840, 1/BA/1902:1903 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_7RQB_071 IL_88739.1 | |
| IL_4V4T_108 | 1/BA/1841:1842, 1/BA/1898:1901 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_7A0S_067 IL_16396.2 | |
| IL_4V4T_109 | 1/BA/1846:1849, 1/BA/1893:1894 | Minor groove platform Not in a motif group | homologous IL_7RQB_073 IL_88739.1 | |
| IL_4V4T_110 | 1/BA/1851:1855, 1/BA/1887:1891 | UAA/GAN with extra pair Not in a motif group | homologous IL_7A0S_069 IL_90318.1 | |
| IL_4V4T_111 | 1/BA/1856:1860, 1/BA/1882:1886 | Triple sheared Not in a motif group | homologous IL_7RQB_075 IL_56467.8 | |
| IL_4V4T_112 | 1/BA/1933:1934, 1/BA/1964:1967 | Multiple bulged bases Not in a motif group | geometric IL_5J7L_318 IL_59677.2 | |
| IL_4V4T_113 | 1/BA/1934:1945, 1/BA/1961:1964 | No text annotation Not in a motif group | homologous IL_7A0S_072 IL_81589.2 | |
| IL_4V4T_114 | 1/BA/2050:2052, 1/BA/2617:2618 | Major groove platform Not in a motif group | homologous IL_7A0S_073 IL_27635.1 | |
| IL_4V4T_115 | 1/BA/2066:2069, 1/BA/2442:2444 | No text annotation Not in a motif group | geometric IL_353D_001 IL_95997.1 | |
| IL_4V4T_116 | 1/BA/2070:2071, 1/BA/2438:2441 | Minor groove platform Not in a motif group | homologous IL_7RQB_081 IL_42622.2 | |
| IL_4V4T_117 | 1/BA/2081:2083, 1/BA/2236:2239 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_082 IL_38958.7 | |
| IL_4V4T_118 | 1/BA/2085:2087, 1/BA/2232:2234 | No text annotation Not in a motif group | ||
| IL_4V4T_119 | 1/BA/2350:2354, 1/BA/2363:2367 | Triple sheared Not in a motif group | geometric IL_5J7L_274 IL_56467.8 | |
| IL_4V4T_120 | 1/BA/2400:2404, 1/BA/2413:2416 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_429 IL_30621.2 | |
| IL_4V4T_121 | 1/BA/2454:2455, 1/BA/2496:2498 | Major groove platform Not in a motif group | homologous IL_7A0S_084 IL_27635.1 | |
| IL_4V4T_122 | 1/BA/2456:2461, 1/BA/2489:2495 | No text annotation Not in a motif group | ||
| IL_4V4T_123 | 1/BA/2466:2471, 1/BA/2479:2484 | No text annotation Not in a motif group | ||
| IL_4V4T_124 | 1/BA/2510:2512, 1/BA/2574:2578 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_7RQB_097 IL_90933.2 | |
| IL_4V4T_125 | 1/BA/2512:2513, 1/BA/2571:2574 | No text annotation Not in a motif group | geometric IL_5J7L_341 IL_71530.2 | |
| IL_4V4T_126 | 1/BA/2521:2523, 1/BA/2540:2544 | No text annotation Not in a motif group | ||
| IL_4V4T_127 | 1/BA/2591:2592, 1/BA/2601:2603 | Single bulged A Not in a motif group | homologous IL_7RQB_101 IL_37497.2 | |
| IL_4V4T_128 | 1/BA/2636:2640, 1/BA/2774:2782 | tSH-tHS-tHW Not in a motif group | homologous IL_4WF9_099 IL_04638.1 | |
| IL_4V4T_129 | 1/BA/2680:2685, 1/BA/2724:2727 | No text annotation Not in a motif group | ||
| IL_4V4T_130 | 1/BA/2686:2692, 1/BA/2717:2723 | No text annotation Not in a motif group | ||
| IL_4V4T_131 | 1/BA/2695:2696, 1/BA/2711:2714 | Multiple bulged bases Not in a motif group | geometric IL_5TBW_109 IL_71530.2 | |
| IL_4V4T_132 | 1/BA/2737:2742, 1/BA/2762:2767 | UAA/GAN with extra cWW Not in a motif group | homologous IL_7RQB_107 IL_49767.5 | |
| IL_4V4T_133 | 1/BA/2838:2840, 1/BA/2877:2880 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5ML7_010 IL_82068.2 | |
| IL_4V4T_134 | 1/BA/2843:2845, 1/BA/2871:2874 | No text annotation Not in a motif group | homologous IL_4WF9_107 IL_02284.5 | |
| IL_4V4T_135 | 1/BA/2845:2852, 1/BA/2865:2871 | No text annotation Not in a motif group | ||
| IL_4V4T_136 | 1/BB/16:18, 1/BB/65:68 | Decoding loop with one bulged A Not in a motif group | geometric IL_3LOA_003 IL_10023.1 | |
| IL_4V4T_137 | 1/BB/23:28, 1/BB/56:60 | No text annotation Not in a motif group | homologous IL_7RQB_112 NA | |
| IL_4V4T_138 | 1/BB/30:31, 1/BB/51:54 | No text annotation Not in a motif group | ||
| IL_4V4T_139 | 1/BB/71:79, 1/BB/97:105 | Bacterial 5S Loop E Not in a motif group | homologous IL_7RQB_115 IL_56455.3 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4V4T_034 | Single bulged A | ||
| IL_4V4T_037 | Minor groove platform |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_4V4T_001 | 1/AA/46:47, 1/AA/361:367, 1/AA/393:395 | No text annotation Not in a motif group | homologous J3_5J7L_001 NA | |
| J3_4V4T_002 | 1/AA/586:588, 1/AA/651:654, 1/AA/754:755 | No text annotation Not in a motif group | ||
| J3_4V4T_003 | 1/AA/672:673, 1/AA/717:725, 1/AA/732:734 | No text annotation Not in a motif group | homologous J3_6CZR_017 NA | |
| J3_4V4T_004 | 1/AA/826:829, 1/AA/857:861, 1/AA/868:874 | No text annotation Not in a motif group | homologous J3_4LFB_001 NA | |
| J3_4V4T_005 | 1/AA/943:947, 1/AA/1234:1237, 1/AA/1337:1340 | No text annotation Not in a motif group | ||
| J3_4V4T_006 | 1/AA/955:962, 1/AA/973:984, 1/AA/1221:1225 | No text annotation Not in a motif group | ||
| J3_4V4T_007 | 1/AA/990:998, 1/AA/1043:1047, 1/AA/1210:1215 | No text annotation Not in a motif group | ||
| J3_4V4T_009 | 1/AA/1063:1068, 1/AA/1107:1113, 1/AA/1187:1193 | No text annotation Not in a motif group | ||
| J3_4V4T_010 | 1/AA/1072:1074, 1/AA/1083:1087, 1/AA/1098:1103 | No text annotation Not in a motif group | ||
| J3_4V4T_011 | 1/AA/1116:1118, 1/AA/1155:1161, 1/AA/1175:1184 | No text annotation Not in a motif group | ||
| J3_4V4T_012 | 1/AA/1237:1241, 1/AA/1296:1303, 1/AA/1334:1337 | No text annotation Not in a motif group | ||
| J3_4V4T_013 | 1/BA/55:57, 1/BA/70:76, 1/BA/110:115 | No text annotation Not in a motif group | ||
| J3_4V4T_014 | 1/BA/683:689, 1/BA/773:777, 1/BA/787:794 | No text annotation Not in a motif group | ||
| J3_4V4T_015 | 1/BA/698:700, 1/BA/732:737, 1/BA/759:763 | No text annotation Not in a motif group | ||
| J3_4V4T_016 | 1/BA/1055:1057, 1/BA/1081:1091, 1/BA/1100:1104 | No text annotation Not in a motif group | ||
| J3_4V4T_017 | 1/BA/1298:1303, 1/BA/1625:1627, 1/BA/1639:1642 | No text annotation Not in a motif group | homologous J3_7A0S_006 NA | |
| J3_4V4T_018 | 1/BA/1306:1309, 1/BA/1605:1611, 1/BA/1620:1622 | No text annotation Not in a motif group | homologous J3_7RQB_008 NA | |
| J3_4V4T_019 | 1/BA/1344:1350, 1/BA/1381:1385, 1/BA/1402:1403 | No text annotation Not in a motif group | ||
| J3_4V4T_020 | 1/BA/2090:2093, 1/BA/2196:2205, 1/BA/2219:2229 | No text annotation Not in a motif group | ||
| J3_4V4T_021 | 1/BA/2282:2284, 1/BA/2384:2397, 1/BA/2419:2427 | No text annotation Not in a motif group | ||
| J3_4V4T_022 | 1/BA/2294:2299, 1/BA/2317:2324, 1/BA/2331:2338 | No text annotation Not in a motif group | ||
| J3_4V4T_023 | 1/BA/2517:2520, 1/BA/2545:2547, 1/BA/2561:2567 | No text annotation Not in a motif group | homologous J3_7RQB_012 NA | |
| J3_4V4T_024 | 1/BA/2814:2815, 1/BA/2831:2837, 1/BA/2881:2886 | No text annotation Not in a motif group | ||
| J3_4V4T_025 | 1/BB/10:16, 1/BB/68:69, 1/BB/107:110 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4V4T_008 | No text annotation |
Coloring options: