6FYY Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6FYY_001 | 1/1/13:22 | No text annotation Not in a motif group | homologous HL_5UD5_001 HL_09136.1 | |
| HL_6FYY_002 | 1/1/31:39 | No text annotation Not in a motif group | homologous HL_5E81_212 NA | |
| HL_6FYY_003 | 1/1/53:61 | No text annotation Not in a motif group | homologous HL_1YFG_003 NA | |
| HL_6FYY_004 | 1/2/7:17 | No text annotation Not in a motif group | homologous HL_4V88_186 HL_89881.2 | |
| HL_6FYY_005 | 1/2/70:81 | No text annotation Not in a motif group | ||
| HL_6FYY_006 | 1/2/153:159 | Other HL Not in a motif group | homologous HL_4V88_188 HL_76539.2 | |
| HL_6FYY_007 | 1/2/189:194 | No text annotation Not in a motif group | ||
| HL_6FYY_008 | 1/2/229:234 | No text annotation Not in a motif group | geometric HL_3SKI_003 HL_52841.1 | |
| HL_6FYY_009 | 1/2/242:249 | T-loop with 1 bulged base Not in a motif group | homologous HL_4V88_191 HL_27930.1 | |
| HL_6FYY_010 | 1/2/274:280 | No text annotation Not in a motif group | geometric HL_5J7L_018 HL_34168.2 | |
| HL_6FYY_011 | 1/2/329:337 | No text annotation Not in a motif group | homologous HL_4V88_193 HL_69023.2 | |
| HL_6FYY_012 | 1/2/367:372 | No text annotation Not in a motif group | homologous HL_4V88_194 HL_50142.2 | |
| HL_6FYY_013 | 1/2/392:403 | No text annotation Not in a motif group | homologous HL_4V88_195 HL_84288.1 | |
| HL_6FYY_014 | 1/2/413:418 | UNCG Not in a motif group | homologous HL_4V88_196 HL_03562.2 | |
| HL_6FYY_015 | 1/2/449:455 | No text annotation Not in a motif group | homologous HL_4V88_197 HL_09136.1 | |
| HL_6FYY_016 | 1/2/490:495 | No text annotation Not in a motif group | homologous HL_4V88_198 HL_56691.2 | |
| HL_6FYY_017 | 1/2/519:531 | No text annotation Not in a motif group | geometric HL_4V88_199 HL_06285.2 | |
| HL_6FYY_018 | 1/2/568:573 | Other HL Not in a motif group | homologous HL_4V88_200 HL_53845.1 | |
| HL_6FYY_019 | 1/2/714:724 | No text annotation Not in a motif group | ||
| HL_6FYY_020 | 1/2/764:772 | No text annotation Not in a motif group | homologous HL_4V88_203 HL_46766.2 | |
| HL_6FYY_021 | 1/2/777:782 | No text annotation Not in a motif group | ||
| HL_6FYY_022 | 1/2/828:842 | No text annotation Not in a motif group | homologous HL_4V88_205 HL_96598.1 | |
| HL_6FYY_023 | 1/2/899:908 | No text annotation Not in a motif group | homologous HL_4V88_206 HL_12326.1 | |
| HL_6FYY_024 | 1/2/936:941 | Other HL Not in a motif group | homologous HL_4V88_207 HL_87030.2 | |
| HL_6FYY_025 | 1/2/995:1007 | No text annotation Not in a motif group | ||
| HL_6FYY_026 | 1/2/1053:1064 | No text annotation Not in a motif group | ||
| HL_6FYY_027 | 1/2/1083:1088 | Other HL Not in a motif group | homologous HL_4V88_210 HL_42097.1 | |
| HL_6FYY_028 | 1/2/1120:1125 | GNRA Not in a motif group | homologous HL_4V88_211 HL_42097.1 | |
| HL_6FYY_029 | 1/2/1187:1196 | No text annotation Not in a motif group | ||
| HL_6FYY_030 | 1/2/1237:1246 | No text annotation Not in a motif group | homologous HL_4V88_213 HL_53597.2 | |
| HL_6FYY_031 | 1/2/1295:1300 | GNRA Not in a motif group | homologous HL_4V88_214 HL_42097.1 | |
| HL_6FYY_032 | 1/2/1308:1315 | No text annotation Not in a motif group | homologous HL_4V88_215 HL_71554.2 | |
| HL_6FYY_033 | 1/2/1358:1363 | No text annotation Not in a motif group | geometric HL_2Y9H_003 HL_16173.1 | |
| HL_6FYY_034 | 1/2/1394:1400 | No text annotation Not in a motif group | homologous HL_4V88_217 HL_42097.1 | |
| HL_6FYY_035 | 1/2/1499:1504 | GNRA Not in a motif group | homologous HL_4V88_218 HL_42097.1 | |
| HL_6FYY_036 | 1/2/1548:1559 | No text annotation Not in a motif group | homologous HL_4V88_219 HL_22554.1 | |
| HL_6FYY_037 | 1/2/1592:1600 | No text annotation Not in a motif group | homologous HL_4V88_220 HL_60812.1 | |
| HL_6FYY_039 | 1/2/1776:1781 | Other HL Not in a motif group | homologous HL_4V88_222 HL_16173.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6FYY_038 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6FYY_001 | 1/2/24:26, 1/2/599:600 | Single bulged C Not in a motif group | homologous IL_4V88_384 IL_61258.12 | |
| IL_6FYY_002 | 1/2/35:37, 1/2/470:472 | UC cWW Not in a motif group | homologous IL_4V88_385 IL_51629.2 | |
| IL_6FYY_003 | 1/2/42:48, 1/2/430:432 | No text annotation Not in a motif group | homologous IL_4V88_387 IL_33912.1 | |
| IL_6FYY_004 | 1/2/50:52, 1/2/427:428 | Minor groove platform Not in a motif group | homologous IL_4V88_388 IL_93353.1 | |
| IL_6FYY_005 | 1/2/58:63, 1/2/87:89 | No text annotation Not in a motif group | homologous IL_4V88_389 IL_95004.1 | |
| IL_6FYY_006 | 1/2/64:69, 1/2/82:86 | No text annotation Not in a motif group | homologous IL_4V88_390 IL_77691.1 | |
| IL_6FYY_007 | 1/2/109:112, 1/2/301:304 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_391 IL_30621.2 | |
| IL_6FYY_008 | 1/2/112:113, 1/2/299:301 | Single stack bend Not in a motif group | geometric IL_4LFB_041 IL_76488.2 | |
| IL_6FYY_009 | 1/2/113:117, 1/2/298:299 | Not an internal loop Not in a motif group | geometric IL_4UYK_002 IL_76488.2 | |
| IL_6FYY_010 | 1/2/117:123, 1/2/293:298 | No text annotation Not in a motif group | ||
| IL_6FYY_011 | 1/2/123:124, 1/2/291:293 | Single stack bend Not in a motif group | geometric IL_4LFB_041 IL_76488.2 | |
| IL_6FYY_012 | 1/2/142:148, 1/2/164:171 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_4V88_394 IL_80604.2 | |
| IL_6FYY_013 | 1/2/149:151, 1/2/161:163 | Isolated cWH basepair Not in a motif group | geometric IL_6RA4_002 IL_51629.2 | |
| IL_6FYY_014 | 1/2/185:188, 1/2/195:198 | Double sheared Not in a motif group | homologous IL_4V88_396 IL_09705.9 | |
| IL_6FYY_015 | 1/2/203:205, 1/2/258:262 | Major groove platform with extra cWW Not in a motif group | geometric IL_4V88_397 IL_05564.2 | |
| IL_6FYY_016 | 1/2/205:207, 1/2/255:258 | No text annotation Not in a motif group | geometric IL_4N0T_004 IL_46796.1 | |
| IL_6FYY_017 | 1/2/207:209, 1/2/254:255 | Single stack bend Not in a motif group | geometric IL_4LFB_041 IL_76488.2 | |
| IL_6FYY_018 | 1/2/264:266, 1/2/287:288 | Single bulged A Not in a motif group | homologous IL_4V88_399 IL_37497.2 | |
| IL_6FYY_019 | 1/2/269:272, 1/2/282:284 | No text annotation Not in a motif group | homologous IL_4V88_400 IL_47298.1 | |
| IL_6FYY_020 | 1/2/310:315, 1/2/347:354 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4V88_402 IL_45067.2 | |
| IL_6FYY_021 | 1/2/317:322, 1/2/344:345 | No text annotation Not in a motif group | geometric IL_5Y58_001 IL_48100.2 | |
| IL_6FYY_022 | 1/2/362:364, 1/2/375:380 | No text annotation Not in a motif group | homologous IL_4V88_404 IL_11347.1 | |
| IL_6FYY_023 | 1/2/388:390, 1/2/405:407 | Isolated cWH basepair Not in a motif group | homologous IL_4V88_405 IL_51629.2 | |
| IL_6FYY_024 | 1/2/410:412, 1/2/419:421 | Isolated near basepair Not in a motif group | homologous IL_4V88_406 IL_52767.2 | |
| IL_6FYY_025 | 1/2/438:440, 1/2/462:463 | Single bulged U Not in a motif group | homologous IL_4V88_407 IL_83039.13 | |
| IL_6FYY_026 | 1/2/442:446, 1/2/459:460 | C-loop Not in a motif group | geometric IL_5J7L_018 IL_75255.1 | |
| IL_6FYY_027 | 1/2/446:447, 1/2/457:459 | Single bulged G Not in a motif group | geometric IL_5J7L_019 IL_00225.2 | |
| IL_6FYY_028 | 1/2/479:483, 1/2/502:507 | No text annotation Not in a motif group | geometric IL_5BTM_001 IL_05145.2 | |
| IL_6FYY_029 | 1/2/513:515, 1/2/535:542 | No text annotation Not in a motif group | homologous IL_8C3A_420 IL_55023.1 | |
| IL_6FYY_030 | 1/2/516:519, 1/2/531:534 | Double sheared Not in a motif group | geometric IL_4LFB_060 IL_09705.9 | |
| IL_6FYY_031 | 1/2/549:556, 1/2/586:587 | SSU/LSU pseudoknot Not in a motif group | homologous IL_4V88_413 IL_15861.7 | |
| IL_6FYY_032 | 1/2/556:558, 1/2/585:586 | Single bulged U Not in a motif group | geometric IL_4V88_407 IL_83039.13 | |
| IL_6FYY_033 | 1/2/561:567, 1/2/574:582 | No text annotation Not in a motif group | homologous IL_4V88_415 IL_55871.1 | |
| IL_6FYY_034 | 1/2/615:621, 1/2/1103:1104 | No text annotation Not in a motif group | homologous IL_4V88_416 IL_69996.1 | |
| IL_6FYY_035 | 1/2/623:625, 1/2/972:974 | No text annotation Not in a motif group | homologous IL_4V88_417 IL_95997.1 | |
| IL_6FYY_036 | 1/2/626:630, 1/2/967:971 | tSH-tHW-tHS Not in a motif group | homologous IL_4V88_418 IL_17136.1 | |
| IL_6FYY_037 | 1/2/650:657, 1/2/676:683 | No text annotation Not in a motif group | ||
| IL_6FYY_038 | 1/2/703:713, 1/2/725:735 | No text annotation Not in a motif group | ||
| IL_6FYY_039 | 1/2/745:747, 1/2/801:805 | Major groove minor groove platform with extra cWW Not in a motif group | geometric IL_4WF9_012 IL_92788.2 | |
| IL_6FYY_040 | 1/2/748:750, 1/2/798:800 | No text annotation Not in a motif group | homologous IL_4V88_424 IL_95997.1 | |
| IL_6FYY_041 | 1/2/818:821, 1/2/849:851 | Isolated cWH basepair Not in a motif group | homologous IL_4V88_427 IL_51629.2 | |
| IL_6FYY_042 | 1/2/866:869, 1/2/956:960 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_429 IL_30621.2 | |
| IL_6FYY_043 | 1/2/870:873, 1/2/952:955 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_430 IL_30621.2 | |
| IL_6FYY_044 | 1/2/873:877, 1/2/949:952 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_431 IL_30621.2 | |
| IL_6FYY_045 | 1/2/884:887, 1/2/922:926 | No text annotation Not in a motif group | ||
| IL_6FYY_046 | 1/2/887:889, 1/2/921:922 | Single stack bend Not in a motif group | geometric IL_4V83_236 IL_76488.2 | |
| IL_6FYY_047 | 1/2/892:898, 1/2/909:918 | No text annotation Not in a motif group | homologous IL_8C3A_440 IL_22252.1 | |
| IL_6FYY_048 | 1/2/982:993, 1/2/1009:1017 | No text annotation Not in a motif group | ||
| IL_6FYY_049 | 1/2/1033:1035, 1/2/1094:1100 | No text annotation Not in a motif group | homologous IL_4V88_437 IL_19557.3 | |
| IL_6FYY_050 | 1/2/1040:1044, 1/2/1072:1076 | No text annotation Not in a motif group | geometric IL_5TBW_121 IL_05145.2 | |
| IL_6FYY_051 | 1/2/1050:1052, 1/2/1065:1066 | Single bulged U Not in a motif group | homologous IL_4V88_439 IL_83039.13 | |
| IL_6FYY_052 | 1/2/1110:1117, 1/2/1128:1133 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4V88_440 IL_24606.2 | |
| IL_6FYY_053 | 1/2/1143:1145, 1/2/1630:1631 | No text annotation Not in a motif group | ||
| IL_6FYY_054 | 1/2/1145:1146, 1/2/1628:1630 | Single bulged A Not in a motif group | geometric IL_4LFB_035 IL_37497.2 | |
| IL_6FYY_055 | 1/2/1148:1150, 1/2/1625:1626 | Single bulged G Not in a motif group | homologous IL_4V88_442 IL_00225.2 | |
| IL_6FYY_056 | 1/2/1156:1159, 1/2/1615:1619 | C-loop Not in a motif group | homologous IL_4V88_443 IL_63596.6 | |
| IL_6FYY_057 | 1/2/1172:1175, 1/2/1461:1464 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5EW4_002 IL_30621.2 | |
| IL_6FYY_058 | 1/2/1177:1178, 1/2/1457:1459 | Minor groove platform Not in a motif group | homologous IL_4V88_445 IL_42622.2 | |
| IL_6FYY_059 | 1/2/1212:1214, 1/2/1446:1448 | No text annotation Not in a motif group | homologous IL_4V88_446 IL_95997.1 | |
| IL_6FYY_060 | 1/2/1222:1229, 1/2/1256:1259 | No text annotation Not in a motif group | ||
| IL_6FYY_061 | 1/2/1229:1232, 1/2/1251:1256 | No text annotation Not in a motif group | ||
| IL_6FYY_062 | 1/2/1233:1235, 1/2/1248:1250 | No text annotation Not in a motif group | homologous IL_4V88_448 IL_10023.1 | |
| IL_6FYY_063 | 1/2/1267:1269, 1/2/1438:1439 | Single bulged U Not in a motif group | homologous IL_4V88_449 IL_83039.13 | |
| IL_6FYY_064 | 1/2/1271:1275, 1/2/1434:1436 | Isolated cWS basepair Not in a motif group | geometric IL_4V88_450 IL_76319.2 | |
| IL_6FYY_065 | 1/2/1275:1277, 1/2/1428:1434 | Minor groove platform with extra cWW Not in a motif group | homologous IL_4V88_451 IL_92788.2 | |
| IL_6FYY_066 | 1/2/1278:1280, 1/2/1424:1427 | No text annotation Not in a motif group | geometric IL_5TBW_079 IL_95997.1 | |
| IL_6FYY_067 | 1/2/1288:1291, 1/2/1322:1325 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_461 IL_30621.2 | |
| IL_6FYY_068 | 1/2/1305:1307, 1/2/1316:1317 | Minor groove platform Not in a motif group | geometric IL_4V88_388 IL_93353.1 | |
| IL_6FYY_069 | 1/2/1338:1341, 1/2/1381:1383 | No text annotation Not in a motif group | homologous IL_4V88_455 IL_10023.1 | |
| IL_6FYY_070 | 1/2/1344:1347, 1/2/1375:1378 | Minor groove platform Not in a motif group | homologous IL_4V88_456 IL_76458.1 | |
| IL_6FYY_071 | 1/2/1352:1353, 1/2/1368:1370 | Single bulged U Not in a motif group | geometric IL_6UFH_004 IL_83039.13 | |
| IL_6FYY_072 | 1/2/1387:1389, 1/2/1405:1410 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4V88_458 IL_58032.1 | |
| IL_6FYY_073 | 1/2/1478:1485, 1/2/1517:1525 | No text annotation Not in a motif group | homologous IL_4V88_459 IL_10447.1 | |
| IL_6FYY_074 | 1/2/1486:1492, 1/2/1511:1516 | No text annotation Not in a motif group | homologous IL_4V88_460 IL_75461.4 | |
| IL_6FYY_075 | 1/2/1494:1496, 1/2/1507:1509 | No text annotation Not in a motif group | geometric IL_4WF9_018 IL_51629.2 | |
| IL_6FYY_076 | 1/2/1538:1543, 1/2/1564:1569 | No text annotation Not in a motif group | homologous IL_4V88_462 IL_19954.2 | |
| IL_6FYY_077 | 1/2/1634:1636, 1/2/1762:1765 | No text annotation Not in a motif group | homologous IL_4V88_463 IL_36143.3 | |
| IL_6FYY_078 | 1/2/1636:1639, 1/2/1758:1762 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_99670.1 | |
| IL_6FYY_079 | 1/2/1640:1642, 1/2/1755:1757 | No text annotation Not in a motif group | geometric IL_3GM7_003 IL_95997.1 | |
| IL_6FYY_080 | 1/2/1642:1645, 1/2/1751:1755 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5J7L_033 IL_71110.1 | |
| IL_6FYY_081 | 1/2/1648:1650, 1/2/1746:1748 | AA cWW Not in a motif group | homologous IL_4V88_467 IL_95997.1 | |
| IL_6FYY_082 | 1/2/1651:1654, 1/2/1742:1745 | Double sheared Not in a motif group | geometric IL_4KZD_002 IL_09705.9 | |
| IL_6FYY_083 | 1/2/1654:1656, 1/2/1741:1742 | Single bulged U Not in a motif group | homologous IL_4V88_469 IL_83039.13 | |
| IL_6FYY_084 | 1/2/1663:1665, 1/2/1732:1734 | No text annotation Not in a motif group | homologous IL_4V88_470 IL_51629.2 | |
| IL_6FYY_085 | 1/2/1667:1670, 1/2/1727:1730 | Double sheared Not in a motif group | homologous IL_4V88_471 IL_09705.9 | |
| IL_6FYY_086 | 1/2/1673:1676, 1/2/1721:1724 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_473 IL_30621.2 | |
| IL_6FYY_087 | 1/2/1676:1680, 1/2/1717:1721 | Triple sheared Not in a motif group | homologous IL_4V88_474 IL_56467.8 | |
| IL_6FYY_088 | 1/2/1684:1688, 1/2/1709:1713 | No text annotation Not in a motif group | ||
| IL_6FYY_089 | 1/2/1768:1770, 1/2/1787:1788 | Single stack bend Not in a motif group | geometric IL_4LFB_041 IL_76488.2 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6FYY_001 | 1/2/632:634, 1/2/860:865, 1/2/961:965 | No text annotation Not in a motif group | homologous J3_8C3A_034 NA | |
| J3_6FYY_002 | 1/2/880:883, 1/2/927:935, 1/2/942:946 | No text annotation Not in a motif group | homologous J3_4V88_033 NA | |
| J3_6FYY_003 | 1/2/1036:1038, 1/2/1078:1082, 1/2/1089:1093 | No text annotation Not in a motif group | homologous J3_4V88_034 NA | |
| J3_6FYY_004 | 1/2/1160:1163, 1/2/1579:1585, 1/2/1607:1614 | No text annotation Not in a motif group | homologous J3_4V88_035 NA | |
| J3_6FYY_005 | 1/2/1167:1170, 1/2/1466:1468, 1/2/1572:1575 | No text annotation Not in a motif group | homologous J3_4V88_036 NA | |
| J3_6FYY_006 | 1/2/1179:1186, 1/2/1197:1208, 1/2/1452:1456 | No text annotation Not in a motif group | ||
| J3_6FYY_007 | 1/2/1214:1219, 1/2/1262:1266, 1/2/1440:1446 | No text annotation Not in a motif group | homologous J3_4V88_038 NA | |
| J3_6FYY_008 | 1/2/1282:1287, 1/2/1326:1331, 1/2/1417:1422 | No text annotation Not in a motif group | homologous J3_4V88_039 NA | |
| J3_6FYY_009 | 1/2/1291:1293, 1/2/1302:1305, 1/2/1317:1322 | No text annotation Not in a motif group | ||
| J3_6FYY_010 | 1/2/1335:1337, 1/2/1384:1387, 1/2/1410:1413 | No text annotation Not in a motif group | homologous J3_4V88_040 NA | |
| J3_6FYY_011 | 1/2/1468:1472, 1/2/1531:1538, 1/2/1569:1572 | No text annotation Not in a motif group | homologous J3_8C3A_044 NA |
Problematic loops
No problematic loops
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