6N8O | Motifs

Valid loops

#	loop id	location	annotation	motif
1	HL_6N8O_001 ➜	1/A/38:45	NA	NA
2	HL_6N8O_002 ➜	1/A/69:74	NA	NA
3	HL_6N8O_003 ➜	1/A/90:96	NA	NA
4	HL_6N8O_004 ➜	1/A/132:136	NA	NA
5	HL_6N8O_005 ➜	1/A/194:201	NA	NA
6	HL_6N8O_006 ➜	1/A/208:212	NA	NA
7	HL_6N8O_007 ➜	1/A/216:224	NA	NA
8	HL_6N8O_008 ➜	1/A/278:287	NA	NA
9	HL_6N8O_010 ➜	1/A/357:362	NA	NA
10	HL_6N8O_011 ➜	1/A/382:387	NA	NA
11	HL_6N8O_012 ➜	1/A/542:549	NA	NA
12	HL_6N8O_013 ➜	1/A/599:604	NA	NA
13	HL_6N8O_014 ➜	1/A/640:649	NA	NA
14	HL_6N8O_015 ➜	1/A/686:694	NA	NA
15	HL_6N8O_017 ➜	1/A/732:737	NA	NA
16	HL_6N8O_022 ➜	1/A/958:963	NA	NA
17	HL_6N8O_026 ➜	1/A/1148:1155	NA	NA
18	HL_6N8O_029 ➜	1/A/1347:1357	NA	NA
19	HL_6N8O_030 ➜	1/A/1403:1408	NA	NA
20	HL_6N8O_066 ➜	1/A/3025:3030	NA	NA
21	HL_6N8O_067 ➜	1/A/3068:3073	NA	NA
22	HL_6N8O_068 ➜	1/A/3110:3124	NA	NA
23	HL_6N8O_069 ➜	1/A/3194:3197	NA	NA
24	HL_6N8O_071 ➜	1/A/3303:3311	NA	NA
25	HL_6N8O_073 ➜	1/B/36:41	NA	NA
26	HL_6N8O_074 ➜	1/B/88:93	NA	NA
27	HL_6N8O_075 ➜	1/C/69:89	NA	NA
28	HL_6N8O_076 ➜	1/C/108:114	NA	NA
29	HL_6N8O_077 ➜	1/C/124:129	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	HL_6N8O_009 ➜	missing nts	NA
2	HL_6N8O_016 ➜	missing nts	NA
3	HL_6N8O_018 ➜	missing nts	NA
4	HL_6N8O_019 ➜	missing nts	NA
5	HL_6N8O_020 ➜	missing nts	NA
6	HL_6N8O_021 ➜	missing nts	NA
7	HL_6N8O_023 ➜	missing nts	NA
8	HL_6N8O_024 ➜	missing nts	NA
9	HL_6N8O_025 ➜	missing nts	NA
10	HL_6N8O_027 ➜	missing nts	NA
11	HL_6N8O_028 ➜	missing nts	NA
12	HL_6N8O_031 ➜	missing nts	NA
13	HL_6N8O_032 ➜	missing nts	NA
14	HL_6N8O_033 ➜	missing nts	NA
15	HL_6N8O_034 ➜	missing nts	NA
16	HL_6N8O_035 ➜	missing nts	NA
17	HL_6N8O_036 ➜	missing nts	NA
18	HL_6N8O_037 ➜	missing nts	NA
19	HL_6N8O_038 ➜	missing nts	NA
20	HL_6N8O_039 ➜	missing nts	NA
21	HL_6N8O_040 ➜	missing nts	NA
22	HL_6N8O_041 ➜	missing nts	NA
23	HL_6N8O_042 ➜	missing nts	NA
24	HL_6N8O_043 ➜	missing nts	NA
25	HL_6N8O_044 ➜	missing nts	NA
26	HL_6N8O_045 ➜	missing nts	NA
27	HL_6N8O_046 ➜	missing nts	NA
28	HL_6N8O_047 ➜	missing nts	NA
29	HL_6N8O_048 ➜	missing nts	NA
30	HL_6N8O_049 ➜	missing nts	NA
31	HL_6N8O_050 ➜	missing nts	NA
32	HL_6N8O_051 ➜	missing nts	NA
33	HL_6N8O_052 ➜	missing nts	NA
34	HL_6N8O_053 ➜	missing nts	NA
35	HL_6N8O_054 ➜	missing nts	NA
36	HL_6N8O_055 ➜	missing nts	NA
37	HL_6N8O_056 ➜	missing nts	NA
38	HL_6N8O_057 ➜	missing nts	NA
39	HL_6N8O_058 ➜	missing nts	NA
40	HL_6N8O_059 ➜	missing nts	NA
41	HL_6N8O_060 ➜	missing nts	NA
42	HL_6N8O_061 ➜	missing nts	NA
43	HL_6N8O_062 ➜	missing nts	NA
44	HL_6N8O_063 ➜	missing nts	NA
45	HL_6N8O_064 ➜	missing nts	NA
46	HL_6N8O_065 ➜	missing nts	NA
47	HL_6N8O_070 ➜	missing nts	NA
48	HL_6N8O_072 ➜	missing nts	NA

Valid loops

#	loop id	location	annotation	motif
1	IL_6N8O_001 ➜	1/A/3:4,1/C/155:156	NA	NA
2	IL_6N8O_002 ➜	1/A/7:8,1/C/150:152	NA	NA
3	IL_6N8O_003 ➜	1/A/13:15,1/C/144:145	NA	NA
4	IL_6N8O_004 ➜	1/A/27:28,1/A/56:58	NA	NA
5	IL_6N8O_005 ➜	1/A/31:38,1/A/45:53	NA	NA
6	IL_6N8O_006 ➜	1/A/82:89,1/A/97:103	NA	NA
7	IL_6N8O_007 ➜	1/A/123:124,1/A/144:149	NA	NA
8	IL_6N8O_008 ➜	1/A/125:127,1/A/141:143	NA	NA
9	IL_6N8O_010 ➜	1/A/169:172,1/A/246:253	NA	NA
10	IL_6N8O_011 ➜	1/A/177:178,1/A/238:241	NA	NA
11	IL_6N8O_012 ➜	1/A/189:191,1/A/204:205	NA	NA
12	IL_6N8O_013 ➜	1/A/337:339,1/C/25:26	NA	NA
13	IL_6N8O_014 ➜	1/A/376:379,1/A/390:403	NA	NA
14	IL_6N8O_015 ➜	1/A/404:410,1/C/13:19	NA	NA
15	IL_6N8O_016 ➜	1/A/429:431,1/A/628:630	NA	NA
16	IL_6N8O_018 ➜	1/A/512:513,1/A/577:579	NA	NA
17	IL_6N8O_019 ➜	1/A/517:525,1/A/567:573	NA	NA
18	IL_6N8O_020 ➜	1/A/531:538,1/A/553:561	NA	NA
19	IL_6N8O_021 ➜	1/A/668:670,1/A/792:794	NA	NA
20	IL_6N8O_022 ➜	1/A/680:684,1/A/696:700	NA	NA
21	IL_6N8O_023 ➜	1/A/725:728,1/A/741:745	NA	NA
22	IL_6N8O_024 ➜	1/A/752:753,1/A/779:781	NA	NA
23	IL_6N8O_025 ➜	1/A/754:756,1/A/775:778	NA	NA
24	IL_6N8O_027 ➜	1/A/803:805,1/A/938:940	NA	NA
25	IL_6N8O_028 ➜	1/A/805:809,1/A/931:938	NA	NA
26	IL_6N8O_034 ➜	1/A/954:956,1/A/965:967	NA	NA
27	IL_6N8O_035 ➜	1/A/969:970,1/A/1111:1113	NA	NA
28	IL_6N8O_036 ➜	1/A/977:981,1/A/1102:1104	NA	NA
29	IL_6N8O_037 ➜	1/A/983:985,1/A/1099:1100	NA	NA
30	IL_6N8O_046 ➜	1/A/1120:1122,1/A/1136:1138	NA	NA
31	IL_6N8O_047 ➜	1/A/1167:1171,1/A/1328:1332	NA	NA
32	IL_6N8O_048 ➜	1/A/1173:1180,1/A/1325:1326	NA	NA
33	IL_6N8O_049 ➜	1/A/1180:1182,1/A/1324:1325	NA	NA
34	IL_6N8O_052 ➜	1/A/1207:1209,1/A/1296:1297	NA	NA
35	IL_6N8O_055 ➜	1/A/1376:1378,1/A/1428:1431	NA	NA
36	IL_6N8O_057 ➜	1/A/1388:1395,1/A/1415:1419	NA	NA
37	IL_6N8O_059 ➜	1/A/1444:1450,1/A/2354:2359	NA	NA
38	IL_6N8O_113 ➜	1/A/3004:3007,1/A/3139:3144	NA	NA
39	IL_6N8O_114 ➜	1/A/3012:3014,1/A/3040:3042	NA	NA
40	IL_6N8O_115 ➜	1/A/3018:3025,1/A/3030:3036	NA	NA
41	IL_6N8O_116 ➜	1/A/3047:3051,1/A/3091:3094	NA	NA
42	IL_6N8O_117 ➜	1/A/3054:3059,1/A/3084:3088	NA	NA
43	IL_6N8O_119 ➜	1/A/3103:3107,1/A/3127:3131	NA	NA
44	IL_6N8O_120 ➜	1/A/3164:3166,1/A/3284:3286	NA	NA
45	IL_6N8O_122 ➜	1/A/3177:3179,1/A/3210:3211	NA	NA
46	IL_6N8O_123 ➜	1/A/3179:3188,1/A/3204:3210	NA	NA
47	IL_6N8O_124 ➜	1/A/3193:3194,1/A/3197:3199	NA	NA
48	IL_6N8O_128 ➜	1/A/3300:3303,1/A/3311:3314	NA	NA
49	IL_6N8O_129 ➜	1/A/3318:3320,1/A/3387:3388	NA	NA
50	IL_6N8O_130 ➜	1/A/3324:3325,1/A/3381:3383	NA	NA
51	IL_6N8O_132 ➜	1/A/3332:3337,1/A/3367:3371	NA	NA
52	IL_6N8O_134 ➜	1/B/15:16,1/B/63:65	NA	NA
53	IL_6N8O_135 ➜	1/B/21:27,1/B/53:58	NA	NA
54	IL_6N8O_136 ➜	1/B/27:29,1/B/49:53	NA	NA
55	IL_6N8O_137 ➜	1/B/29:30,1/B/47:49	NA	NA
56	IL_6N8O_138 ➜	1/B/32:36,1/B/41:45	NA	NA
57	IL_6N8O_139 ➜	1/B/72:80,1/B/100:106	NA	NA
58	IL_6N8O_140 ➜	1/B/84:87,1/B/94:96	NA	NA
59	IL_6N8O_141 ➜	1/C/68:69,1/C/89:91	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	IL_6N8O_009 ➜	missing nts	NA
2	IL_6N8O_017 ➜	missing nts	NA
3	IL_6N8O_026 ➜	missing nts	NA
4	IL_6N8O_029 ➜	missing nts	NA
5	IL_6N8O_030 ➜	missing nts	NA
6	IL_6N8O_031 ➜	missing nts	NA
7	IL_6N8O_032 ➜	missing nts	NA
8	IL_6N8O_033 ➜	missing nts	NA
9	IL_6N8O_038 ➜	missing nts	NA
10	IL_6N8O_039 ➜	missing nts	NA
11	IL_6N8O_040 ➜	missing nts	NA
12	IL_6N8O_041 ➜	missing nts	NA
13	IL_6N8O_042 ➜	missing nts	NA
14	IL_6N8O_043 ➜	missing nts	NA
15	IL_6N8O_044 ➜	missing nts	NA
16	IL_6N8O_045 ➜	missing nts	NA
17	IL_6N8O_050 ➜	missing nts	NA
18	IL_6N8O_051 ➜	missing nts	NA
19	IL_6N8O_053 ➜	missing nts	NA
20	IL_6N8O_054 ➜	missing nts	NA
21	IL_6N8O_056 ➜	missing nts	NA
22	IL_6N8O_058 ➜	missing nts	NA
23	IL_6N8O_060 ➜	missing nts	NA
24	IL_6N8O_061 ➜	missing nts	NA
25	IL_6N8O_062 ➜	missing nts	NA
26	IL_6N8O_063 ➜	missing nts	NA
27	IL_6N8O_064 ➜	missing nts	NA
28	IL_6N8O_065 ➜	missing nts	NA
29	IL_6N8O_066 ➜	missing nts	NA
30	IL_6N8O_067 ➜	missing nts	NA
31	IL_6N8O_068 ➜	missing nts	NA
32	IL_6N8O_069 ➜	missing nts	NA
33	IL_6N8O_070 ➜	missing nts	NA
34	IL_6N8O_071 ➜	missing nts	NA
35	IL_6N8O_072 ➜	missing nts	NA
36	IL_6N8O_073 ➜	missing nts	NA
37	IL_6N8O_074 ➜	missing nts	NA
38	IL_6N8O_075 ➜	missing nts	NA
39	IL_6N8O_076 ➜	missing nts	NA
40	IL_6N8O_077 ➜	missing nts	NA
41	IL_6N8O_078 ➜	missing nts	NA
42	IL_6N8O_079 ➜	missing nts	NA
43	IL_6N8O_080 ➜	missing nts	NA
44	IL_6N8O_081 ➜	missing nts	NA
45	IL_6N8O_082 ➜	missing nts	NA
46	IL_6N8O_083 ➜	missing nts	NA
47	IL_6N8O_084 ➜	missing nts	NA
48	IL_6N8O_085 ➜	missing nts	NA
49	IL_6N8O_086 ➜	missing nts	NA
50	IL_6N8O_087 ➜	missing nts	NA
51	IL_6N8O_088 ➜	missing nts	NA
52	IL_6N8O_089 ➜	missing nts	NA
53	IL_6N8O_090 ➜	missing nts	NA
54	IL_6N8O_091 ➜	missing nts	NA
55	IL_6N8O_092 ➜	missing nts	NA
56	IL_6N8O_093 ➜	missing nts	NA
57	IL_6N8O_094 ➜	missing nts	NA
58	IL_6N8O_095 ➜	missing nts	NA
59	IL_6N8O_096 ➜	missing nts	NA
60	IL_6N8O_097 ➜	missing nts	NA
61	IL_6N8O_098 ➜	missing nts	NA
62	IL_6N8O_099 ➜	missing nts	NA
63	IL_6N8O_100 ➜	missing nts	NA
64	IL_6N8O_101 ➜	missing nts	NA
65	IL_6N8O_102 ➜	missing nts	NA
66	IL_6N8O_103 ➜	missing nts	NA
67	IL_6N8O_104 ➜	missing nts	NA
68	IL_6N8O_105 ➜	missing nts	NA
69	IL_6N8O_106 ➜	missing nts	NA
70	IL_6N8O_107 ➜	missing nts	NA
71	IL_6N8O_108 ➜	missing nts	NA
72	IL_6N8O_109 ➜	missing nts	NA
73	IL_6N8O_110 ➜	missing nts	NA
74	IL_6N8O_111 ➜	missing nts	NA
75	IL_6N8O_112 ➜	missing nts	NA
76	IL_6N8O_118 ➜	missing nts	NA
77	IL_6N8O_121 ➜	missing nts	NA
78	IL_6N8O_125 ➜	missing nts	NA
79	IL_6N8O_126 ➜	missing nts	NA
80	IL_6N8O_127 ➜	missing nts	NA
81	IL_6N8O_131 ➜	missing nts	NA
82	IL_6N8O_133 ➜	missing nts	NA

Valid loops

#	loop id	location	annotation	motif
1	J3_6N8O_002 ➜	1/A/369:376,1/A/403:404,1/C/19:20	NA	NA
2	J3_6N8O_003 ➜	1/A/502:503,1/A/588:597,1/A/606:611	NA	NA
3	J3_6N8O_014 ➜	1/A/3298:3300,1/A/3314:3318,1/A/3388:3390	NA	NA
4	J3_6N8O_015 ➜	1/B/9:14,1/B/66:67,1/B/111:112	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	J3_6N8O_001 ➜	missing nts	NA
2	J3_6N8O_004 ➜	missing nts	NA
3	J3_6N8O_005 ➜	missing nts	NA
4	J3_6N8O_006 ➜	missing nts	NA
5	J3_6N8O_007 ➜	missing nts	NA
6	J3_6N8O_008 ➜	missing nts	NA
7	J3_6N8O_009 ➜	missing nts	NA
8	J3_6N8O_010 ➜	missing nts	NA
9	J3_6N8O_011 ➜	missing nts	NA
10	J3_6N8O_012 ➜	missing nts	NA
11	J3_6N8O_013 ➜	missing nts	NA

6N8O Internal, Hairpin and 3-way Junction Loop Motifs

Valid loops

Problematic loops

Valid loops

Problematic loops

Valid loops

Problematic loops