6N8O Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6N8O_001 | 1/A/38:45 | No text annotation Not in a motif group | homologous HL_5TBW_001 HL_06192.4 | |
| HL_6N8O_002 | 1/A/69:74 | No text annotation Not in a motif group | homologous HL_5TBW_002 HL_56241.3 | |
| HL_6N8O_003 | 1/A/90:96 | No text annotation Not in a motif group | homologous HL_8C3A_003 HL_67216.8 | |
| HL_6N8O_004 | 1/A/132:136 | No text annotation Not in a motif group | homologous HL_5TBW_004 HL_45598.1 | |
| HL_6N8O_005 | 1/A/194:201 | No text annotation Not in a motif group | homologous HL_8C3A_005 HL_23932.1 | |
| HL_6N8O_006 | 1/A/208:212 | No text annotation Not in a motif group | homologous HL_5TBW_006 HL_33074.1 | |
| HL_6N8O_007 | 1/A/216:224 | No text annotation Not in a motif group | homologous HL_5TBW_007 HL_08002.11 | |
| HL_6N8O_008 | 1/A/278:287 | No text annotation Not in a motif group | homologous HL_5TBW_008 HL_71554.2 | |
| HL_6N8O_010 | 1/A/357:362 | No text annotation Not in a motif group | homologous HL_8C3A_010 HL_85603.2 | |
| HL_6N8O_011 | 1/A/382:387 | No text annotation Not in a motif group | homologous HL_8C3A_011 HL_85603.2 | |
| HL_6N8O_012 | 1/A/542:549 | No text annotation Not in a motif group | ||
| HL_6N8O_013 | 1/A/599:604 | GNRA Not in a motif group | homologous HL_5TBW_013 HL_85603.2 | |
| HL_6N8O_014 | 1/A/640:649 | No text annotation Not in a motif group | homologous HL_8C3A_014 HL_23932.1 | |
| HL_6N8O_015 | 1/A/686:694 | No text annotation Not in a motif group | homologous HL_5TBW_015 HL_39947.1 | |
| HL_6N8O_017 | 1/A/732:737 | GNRA Not in a motif group | homologous HL_5TBW_017 HL_85603.2 | |
| HL_6N8O_022 | 1/A/958:963 | No text annotation Not in a motif group | homologous HL_5TBW_022 HL_96598.3 | |
| HL_6N8O_078 | 1/A/1125:1133 | No text annotation Not in a motif group | ||
| HL_6N8O_026 | 1/A/1148:1155 | No text annotation Not in a motif group | homologous HL_5TBW_026 HL_28421.1 | |
| HL_6N8O_079 | 1/A/1232:1256 | No text annotation Not in a motif group | ||
| HL_6N8O_029 | 1/A/1347:1357 | No text annotation Not in a motif group | ||
| HL_6N8O_030 | 1/A/1403:1408 | GNRA Not in a motif group | homologous HL_5TBW_030 HL_85603.2 | |
| HL_6N8O_080 | 1/A/1462:1470 | No text annotation Not in a motif group | ||
| HL_6N8O_081 | 1/A/1679:1689 | No text annotation Not in a motif group | ||
| HL_6N8O_082 | 1/A/1757:1768 | No text annotation Not in a motif group | ||
| HL_6N8O_083 | 1/A/2464:2491 | No text annotation Not in a motif group | ||
| HL_6N8O_084 | 1/A/2632:2646 | No text annotation Not in a motif group | ||
| HL_6N8O_066 | 1/A/3025:3030 | GNRA Not in a motif group | geometric HL_4V9F_066 HL_85603.2 | |
| HL_6N8O_067 | 1/A/3068:3073 | Ribsomal LSU H95 Not in a motif group | homologous HL_5TBW_066 HL_00828.1 | |
| HL_6N8O_068 | 1/A/3110:3124 | No text annotation Not in a motif group | homologous HL_5TBW_067 HL_56677.8 | |
| HL_6N8O_069 | 1/A/3194:3197 | No text annotation Not in a motif group | geometric HL_6U8D_003 HL_45598.1 | |
| HL_6N8O_071 | 1/A/3303:3311 | No text annotation Not in a motif group | geometric HL_5TBW_070 HL_64690.3 | |
| HL_6N8O_085 | 1/A/3346:3359 | No text annotation Not in a motif group | ||
| HL_6N8O_086 | 1/B/32:45 | No text annotation Not in a motif group | ||
| HL_6N8O_073 | 1/B/36:41 | No text annotation Not in a motif group | geometric HL_5TBW_185 HL_83767.2 | |
| HL_6N8O_074 | 1/B/88:93 | GNRA Not in a motif group | homologous HL_5TBW_186 HL_85603.2 | |
| HL_6N8O_087 | 1/C/47:56 | No text annotation Not in a motif group | ||
| HL_6N8O_075 | 1/C/69:89 | No text annotation Not in a motif group | ||
| HL_6N8O_076 | 1/C/108:114 | No text annotation Not in a motif group | homologous HL_5TBW_075 HL_41152.1 | |
| HL_6N8O_077 | 1/C/124:129 | No text annotation Not in a motif group | homologous HL_5TBW_076 HL_45177.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6N8O_009 | No text annotation | ||
| HL_6N8O_016 | No text annotation | ||
| HL_6N8O_018 | No text annotation | ||
| HL_6N8O_019 | GNRA | ||
| HL_6N8O_020 | No text annotation | ||
| HL_6N8O_021 | No text annotation | ||
| HL_6N8O_023 | GNRA | ||
| HL_6N8O_024 | No text annotation | ||
| HL_6N8O_025 | GNRA | ||
| HL_6N8O_027 | No text annotation | ||
| HL_6N8O_028 | No text annotation | ||
| HL_6N8O_031 | No text annotation | ||
| HL_6N8O_032 | No text annotation | ||
| HL_6N8O_033 | GNRA related | ||
| HL_6N8O_034 | No text annotation | ||
| HL_6N8O_035 | No text annotation | ||
| HL_6N8O_036 | No text annotation | ||
| HL_6N8O_037 | No text annotation | ||
| HL_6N8O_038 | No text annotation | ||
| HL_6N8O_039 | No text annotation | ||
| HL_6N8O_040 | No text annotation | ||
| HL_6N8O_041 | No text annotation | ||
| HL_6N8O_042 | GNRA with one bulged base | ||
| HL_6N8O_043 | No text annotation | ||
| HL_6N8O_044 | No text annotation | ||
| HL_6N8O_045 | No text annotation | ||
| HL_6N8O_046 | No text annotation | ||
| HL_6N8O_047 | No text annotation | ||
| HL_6N8O_048 | No text annotation | ||
| HL_6N8O_049 | No text annotation | ||
| HL_6N8O_050 | No text annotation | ||
| HL_6N8O_051 | No text annotation | ||
| HL_6N8O_052 | No text annotation | ||
| HL_6N8O_053 | No text annotation | ||
| HL_6N8O_054 | No text annotation | ||
| HL_6N8O_055 | No text annotation | ||
| HL_6N8O_056 | No text annotation | ||
| HL_6N8O_057 | No text annotation | ||
| HL_6N8O_058 | No text annotation | ||
| HL_6N8O_059 | No text annotation | ||
| HL_6N8O_060 | GNRA | ||
| HL_6N8O_061 | No text annotation | ||
| HL_6N8O_062 | No text annotation | ||
| HL_6N8O_063 | No text annotation | ||
| HL_6N8O_064 | No text annotation | ||
| HL_6N8O_065 | GNRA | ||
| HL_6N8O_070 | No text annotation | ||
| HL_6N8O_072 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6N8O_002 | 1/A/7:8, 1/C/150:152 | Single bulged C Not in a motif group | homologous IL_5TBW_002 IL_61258.13 | |
| IL_6N8O_003 | 1/A/13:15, 1/C/144:145 | Single bulged U Not in a motif group | homologous IL_8C3A_003 IL_83039.18 | |
| IL_6N8O_004 | 1/A/27:28, 1/A/56:58 | No text annotation Not in a motif group | homologous IL_8C3A_004 IL_11389.1 | |
| IL_6N8O_005 | 1/A/31:38, 1/A/45:53 | tSH-tHW-tHH-tHS Not in a motif group | geometric IL_5TBW_005 IL_35728.2 | |
| IL_6N8O_006 | 1/A/82:89, 1/A/97:103 | No text annotation Not in a motif group | homologous IL_5TBW_006 IL_88613.1 | |
| IL_6N8O_007 | 1/A/123:124, 1/A/144:149 | No text annotation Not in a motif group | geometric IL_5TBW_007 IL_19724.2 | |
| IL_6N8O_008 | 1/A/125:127, 1/A/141:143 | Isolated non-canonical cWW Not in a motif group | homologous IL_5TBW_008 IL_64928.1 | |
| IL_6N8O_010 | 1/A/169:172, 1/A/246:253 | No text annotation Not in a motif group | ||
| IL_6N8O_011 | 1/A/177:178, 1/A/238:241 | Major groove platform Not in a motif group | geometric IL_7A0S_073 IL_27635.5 | |
| IL_6N8O_012 | 1/A/189:191, 1/A/204:205 | Single bulged U Not in a motif group | homologous IL_8C3A_013 IL_83039.18 | |
| IL_6N8O_013 | 1/A/337:339, 1/C/25:26 | Single bulged A Not in a motif group | homologous IL_5TBW_013 IL_37497.8 | |
| IL_6N8O_014 | 1/A/376:379, 1/A/390:403 | No text annotation Not in a motif group | homologous IL_5TBW_014 IL_60992.7 | |
| IL_6N8O_015 | 1/A/404:410, 1/C/13:19 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_5TBW_015 IL_66414.7 | |
| IL_6N8O_016 | 1/A/429:431, 1/A/628:630 | No text annotation Not in a motif group | homologous IL_5TBW_016 IL_27267.1 | |
| IL_6N8O_018 | 1/A/512:513, 1/A/577:579 | Single bulged A Not in a motif group | homologous IL_5TBW_018 IL_37497.8 | |
| IL_6N8O_019 | 1/A/517:525, 1/A/567:573 | No text annotation Not in a motif group | homologous IL_5TBW_019 IL_04797.1 | |
| IL_6N8O_020 | 1/A/531:538, 1/A/553:561 | No text annotation Not in a motif group | homologous IL_5TBW_020 IL_07703.1 | |
| IL_6N8O_021 | 1/A/668:670, 1/A/792:794 | Isolated non-canonical cWW Not in a motif group | homologous IL_5TBW_021 IL_64928.1 | |
| IL_6N8O_022 | 1/A/680:684, 1/A/696:700 | No text annotation Not in a motif group | homologous IL_5TBW_022 IL_74284.1 | |
| IL_6N8O_023 | 1/A/725:728, 1/A/741:745 | UAA/GAN Not in a motif group | homologous IL_5TBW_023 IL_07235.3 | |
| IL_6N8O_024 | 1/A/752:753, 1/A/779:781 | Single bulged A Not in a motif group | homologous IL_5TBW_024 IL_37497.8 | |
| IL_6N8O_025 | 1/A/754:756, 1/A/775:778 | Isolated non-canonical cWW Not in a motif group | geometric IL_5MWI_004 IL_64928.1 | |
| IL_6N8O_027 | 1/A/803:805, 1/A/938:940 | Isolated non-canonical cWW Not in a motif group | geometric IL_5TBW_027 IL_64928.1 | |
| IL_6N8O_028 | 1/A/805:809, 1/A/931:938 | tHW-tHW cross-strand stack Not in a motif group | homologous IL_5TBW_028 IL_17470.7 | |
| IL_6N8O_034 | 1/A/954:956, 1/A/965:967 | Isolated non-canonical cWW Not in a motif group | homologous IL_8C3A_037 IL_64928.1 | |
| IL_6N8O_035 | 1/A/969:970, 1/A/1111:1113 | Single stack bend Not in a motif group | homologous IL_5TBW_035 IL_11389.1 | |
| IL_6N8O_036 | 1/A/977:981, 1/A/1102:1104 | No text annotation Not in a motif group | ||
| IL_6N8O_037 | 1/A/983:985, 1/A/1099:1100 | Single bulged G Not in a motif group | homologous IL_8C3A_040 IL_00225.5 | |
| IL_6N8O_142 | 1/A/990:998, 1/A/1050:1059 | No text annotation Not in a motif group | ||
| IL_6N8O_143 | 1/A/999:1005, 1/A/1045:1049 | No text annotation Not in a motif group | ||
| IL_6N8O_046 | 1/A/1120:1122, 1/A/1136:1138 | Isolated non-canonical cWW Not in a motif group | homologous IL_5TBW_046 IL_64928.1 | |
| IL_6N8O_047 | 1/A/1167:1171, 1/A/1328:1332 | UAA/GAN Not in a motif group | homologous IL_5TBW_048 IL_89002.3 | |
| IL_6N8O_048 | 1/A/1173:1180, 1/A/1325:1326 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5TBW_049 IL_15261.1 | |
| IL_6N8O_049 | 1/A/1180:1182, 1/A/1324:1325 | Single bulged U Not in a motif group | geometric IL_5TBW_050 IL_83039.18 | |
| IL_6N8O_052 | 1/A/1207:1209, 1/A/1296:1297 | Single bulged U Not in a motif group | homologous IL_5TBW_053 IL_83039.18 | |
| IL_6N8O_055 | 1/A/1376:1378, 1/A/1428:1431 | Isolated cWS basepair Not in a motif group | homologous IL_5TBW_057 IL_73554.1 | |
| IL_6N8O_057 | 1/A/1388:1395, 1/A/1415:1419 | Kink-turn Not in a motif group | homologous IL_5TBW_059 IL_70923.4 | |
| IL_6N8O_059 | 1/A/1444:1450, 1/A/2354:2359 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5TBW_061 IL_76042.3 | |
| IL_6N8O_144 | 1/A/1501:1505, 1/A/1513:1515 | No text annotation Not in a motif group | ||
| IL_6N8O_145 | 1/A/1537:1542, 1/A/1551:1584 | No text annotation Not in a motif group | ||
| IL_6N8O_146 | 1/A/1883:1889, 1/A/2346:2349 | No text annotation Not in a motif group | ||
| IL_6N8O_147 | 1/A/1898:1906, 1/A/2333:2337 | No text annotation Not in a motif group | ||
| IL_6N8O_148 | 1/A/1945:1948, 1/A/2098:2103 | No text annotation Not in a motif group | ||
| IL_6N8O_149 | 1/A/2411:2413, 1/A/2807:2811 | No text annotation Not in a motif group | ||
| IL_6N8O_150 | 1/A/2438:2443, 1/A/2504:2509 | No text annotation Not in a motif group | ||
| IL_6N8O_151 | 1/A/2444:2447, 1/A/2499:2503 | No text annotation Not in a motif group | ||
| IL_6N8O_152 | 1/A/2614:2616, 1/A/2624:2627 | No text annotation Not in a motif group | ||
| IL_6N8O_153 | 1/A/2823:2826, 1/A/2863:2867 | No text annotation Not in a motif group | ||
| IL_6N8O_154 | 1/A/2828:2831, 1/A/2857:2862 | No text annotation Not in a motif group | ||
| IL_6N8O_155 | 1/A/2889:2892, 1/A/2909:2914 | No text annotation Not in a motif group | ||
| IL_6N8O_113 | 1/A/3004:3007, 1/A/3139:3144 | Double sheared Not in a motif group | homologous IL_5TBW_114 IL_09705.12 | |
| IL_6N8O_114 | 1/A/3012:3014, 1/A/3040:3042 | Isolated non-canonical cWW Not in a motif group | homologous IL_8C3A_124 IL_64928.1 | |
| IL_6N8O_115 | 1/A/3018:3025, 1/A/3030:3036 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5TBW_116 IL_04346.8 | |
| IL_6N8O_116 | 1/A/3047:3051, 1/A/3091:3094 | Major groove minor groove platform with tHH Not in a motif group | homologous IL_5TBW_117 IL_37712.2 | |
| IL_6N8O_117 | 1/A/3054:3059, 1/A/3084:3088 | UAA/GAN related Not in a motif group | homologous IL_5TBW_118 IL_17136.3 | |
| IL_6N8O_156 | 1/A/3063:3065, 1/A/3076:3080 | No text annotation Not in a motif group | ||
| IL_6N8O_157 | 1/A/3102:3107, 1/A/3127:3132 | No text annotation Not in a motif group | ||
| IL_6N8O_119 | 1/A/3103:3107, 1/A/3127:3131 | UAA/GAN Not in a motif group | homologous IL_5TBW_120 IL_89002.3 | |
| IL_6N8O_158 | 1/A/3163:3166, 1/A/3284:3287 | No text annotation Not in a motif group | ||
| IL_6N8O_120 | 1/A/3164:3166, 1/A/3284:3286 | Isolated non-canonical cWW Not in a motif group | homologous IL_8C3A_130 IL_64928.1 | |
| IL_6N8O_159 | 1/A/3168:3171, 1/A/3279:3282 | No text annotation Not in a motif group | ||
| IL_6N8O_122 | 1/A/3177:3179, 1/A/3210:3211 | Single bulged A Not in a motif group | geometric IL_5TBW_123 IL_37497.8 | |
| IL_6N8O_123 | 1/A/3179:3188, 1/A/3204:3210 | No text annotation Not in a motif group | homologous IL_5TBW_124 IL_15174.1 | |
| IL_6N8O_124 | 1/A/3193:3194, 1/A/3197:3199 | Single bulged U Not in a motif group | homologous IL_5TBW_125 IL_83039.18 | |
| IL_6N8O_128 | 1/A/3300:3303, 1/A/3311:3314 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5TBW_129 IL_86432.1 | |
| IL_6N8O_129 | 1/A/3318:3320, 1/A/3387:3388 | Single bulged U Not in a motif group | homologous IL_8C3A_136 IL_83039.18 | |
| IL_6N8O_130 | 1/A/3324:3325, 1/A/3381:3383 | Single bulged U Not in a motif group | homologous IL_5TBW_131 IL_83039.18 | |
| IL_6N8O_132 | 1/A/3332:3337, 1/A/3367:3371 | No text annotation Not in a motif group | homologous IL_5TBW_133 IL_83162.7 | |
| IL_6N8O_160 | 1/A/3340:3342, 1/A/3363:3364 | No text annotation Not in a motif group | ||
| IL_6N8O_161 | 1/A/3342:3346, 1/A/3359:3363 | No text annotation Not in a motif group | ||
| IL_6N8O_134 | 1/B/15:16, 1/B/63:65 | Single bulged A Not in a motif group | homologous IL_5TBW_372 IL_37497.8 | |
| IL_6N8O_135 | 1/B/21:27, 1/B/53:58 | Minor groove platform related Not in a motif group | homologous IL_5TBW_373 IL_10207.2 | |
| IL_6N8O_162 | 1/B/21:29, 1/B/49:58 | No text annotation Not in a motif group | ||
| IL_6N8O_136 | 1/B/27:29, 1/B/49:53 | No text annotation Not in a motif group | ||
| IL_6N8O_137 | 1/B/29:30, 1/B/47:49 | Single stack bend Not in a motif group | geometric IL_5TBW_375 IL_67809.1 | |
| IL_6N8O_138 | 1/B/32:36, 1/B/41:45 | Symmetric double minor groove platform Not in a motif group | homologous IL_5TBW_376 IL_58103.8 | |
| IL_6N8O_139 | 1/B/72:80, 1/B/100:106 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5TBW_377 IL_04346.8 | |
| IL_6N8O_140 | 1/B/84:87, 1/B/94:96 | Isolated non-canonical cWW Not in a motif group | homologous IL_5TBW_378 IL_64928.1 | |
| IL_6N8O_141 | 1/C/68:69, 1/C/89:91 | Single bulged U Not in a motif group | homologous IL_5TBW_146 IL_83039.18 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6N8O_001 | No text annotation | ||
| IL_6N8O_009 | Other IL | ||
| IL_6N8O_017 | Kink-turn related | ||
| IL_6N8O_026 | No text annotation | ||
| IL_6N8O_029 | Single bulged G | ||
| IL_6N8O_030 | Triple sheared | ||
| IL_6N8O_031 | No text annotation | ||
| IL_6N8O_032 | Single bulged U | ||
| IL_6N8O_033 | No text annotation | ||
| IL_6N8O_038 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_6N8O_039 | Minor groove platform | ||
| IL_6N8O_040 | C-loop with bulged stacked A's | ||
| IL_6N8O_041 | Tandem non-canonical cWW pairs | ||
| IL_6N8O_042 | Isolated non-canonical cWW | ||
| IL_6N8O_043 | Decoding loop related | ||
| IL_6N8O_044 | Isolated non-canonical cWW | ||
| IL_6N8O_045 | Single bulged G | ||
| IL_6N8O_050 | No text annotation | ||
| IL_6N8O_051 | No text annotation | ||
| IL_6N8O_053 | No text annotation | ||
| IL_6N8O_054 | No text annotation | ||
| IL_6N8O_056 | Single bulged A | ||
| IL_6N8O_058 | Single bulged A | ||
| IL_6N8O_060 | No text annotation | ||
| IL_6N8O_061 | No text annotation | ||
| IL_6N8O_062 | Other IL | ||
| IL_6N8O_063 | Multiple bulged bases | ||
| IL_6N8O_064 | No text annotation | ||
| IL_6N8O_065 | Triple sheared | ||
| IL_6N8O_066 | Isolated non-canonical cWW | ||
| IL_6N8O_067 | Single bulged C | ||
| IL_6N8O_068 | Single stack bend | ||
| IL_6N8O_069 | No text annotation | ||
| IL_6N8O_070 | No text annotation | ||
| IL_6N8O_071 | Kink-turn | ||
| IL_6N8O_072 | No text annotation | ||
| IL_6N8O_073 | No text annotation | ||
| IL_6N8O_074 | Major groove platform; stack outside cWW | ||
| IL_6N8O_075 | No text annotation | ||
| IL_6N8O_076 | tSH-tSH-tHH-tHS | ||
| IL_6N8O_077 | Isolated non-canonical cWW | ||
| IL_6N8O_078 | No text annotation | ||
| IL_6N8O_079 | Single bulged A | ||
| IL_6N8O_080 | Kink-turn related | ||
| IL_6N8O_081 | No text annotation | ||
| IL_6N8O_082 | Major groove outside cWW, minor groove, intercalation pocket | ||
| IL_6N8O_083 | Single bulged U | ||
| IL_6N8O_084 | Major groove platform with extra pair | ||
| IL_6N8O_085 | No text annotation | ||
| IL_6N8O_086 | Bulged stacked bases | ||
| IL_6N8O_087 | No text annotation | ||
| IL_6N8O_088 | No text annotation | ||
| IL_6N8O_089 | Major groove platform with intercalation | ||
| IL_6N8O_090 | Single bulged U | ||
| IL_6N8O_091 | Minor groove platform | ||
| IL_6N8O_092 | No text annotation | ||
| IL_6N8O_093 | No text annotation | ||
| IL_6N8O_094 | No text annotation | ||
| IL_6N8O_095 | No text annotation | ||
| IL_6N8O_096 | No text annotation | ||
| IL_6N8O_097 | Single bulged A | ||
| IL_6N8O_098 | Isolated tHS basepair with bulges | ||
| IL_6N8O_099 | Tandem non-canonical cWW pairs | ||
| IL_6N8O_100 | No text annotation | ||
| IL_6N8O_101 | Major groove platform | ||
| IL_6N8O_102 | Isolated non-canonical cWW | ||
| IL_6N8O_103 | Major groove platform | ||
| IL_6N8O_104 | No text annotation | ||
| IL_6N8O_105 | No text annotation | ||
| IL_6N8O_106 | Major groove platform | ||
| IL_6N8O_107 | Isolated non-canonical cWW with bulges | ||
| IL_6N8O_108 | Multiple bulged bases | ||
| IL_6N8O_109 | Isolated non-canonical cWW | ||
| IL_6N8O_110 | Major groove platform with intercalation | ||
| IL_6N8O_111 | Isolated non-canonical cWW | ||
| IL_6N8O_112 | Single bulged A | ||
| IL_6N8O_118 | Multiple bulged bases | ||
| IL_6N8O_121 | Isolated non-canonical cWW | ||
| IL_6N8O_125 | No text annotation | ||
| IL_6N8O_126 | Isolated non-canonical cWW | ||
| IL_6N8O_127 | Tandem non-canonical cWW pairs | ||
| IL_6N8O_131 | No text annotation | ||
| IL_6N8O_133 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6N8O_016 | 1/A/113:124, 1/A/144:158, 1/A/263:267 | No text annotation Not in a motif group | ||
| J3_6N8O_017 | 1/A/340:356, 1/A/363:368, 1/C/21:24 | No text annotation Not in a motif group | ||
| J3_6N8O_002 | 1/A/369:376, 1/A/403:404, 1/C/19:20 | No text annotation Not in a motif group | homologous J3_5TBW_002 NA | |
| J3_6N8O_018 | 1/A/369:379, 1/A/390:404, 1/C/19:20 | No text annotation Not in a motif group | ||
| J3_6N8O_003 | 1/A/502:503, 1/A/588:597, 1/A/606:611 | No text annotation Not in a motif group | homologous J3_5TBW_003 NA | |
| J3_6N8O_019 | 1/A/502:504, 1/A/587:597, 1/A/606:611 | No text annotation Not in a motif group | ||
| J3_6N8O_020 | 1/A/986:987, 1/A/1062:1066, 1/A/1092:1098 | No text annotation Not in a motif group | ||
| J3_6N8O_021 | 1/A/1525:1531, 1/A/1591:1595, 1/A/1612:1614 | No text annotation Not in a motif group | ||
| J3_6N8O_022 | 1/A/1654:1658, 1/A/1791:1792, 1/A/1796:1801 | No text annotation Not in a motif group | ||
| J3_6N8O_023 | 1/A/2529:2533, 1/A/2546:2563, 1/A/2578:2581 | No text annotation Not in a motif group | ||
| J3_6N8O_024 | 1/A/2651:2653, 1/A/2754:2765, 1/A/2793:2798 | No text annotation Not in a motif group | ||
| J3_6N8O_025 | 1/A/2664:2668, 1/A/2686:2692, 1/A/2701:2706 | No text annotation Not in a motif group | ||
| J3_6N8O_026 | 1/A/3171:3176, 1/A/3212:3220, 1/A/3265:3279 | No text annotation Not in a motif group | ||
| J3_6N8O_014 | 1/A/3298:3300, 1/A/3314:3318, 1/A/3388:3390 | No text annotation Not in a motif group | homologous J3_5TBW_015 NA | |
| J3_6N8O_015 | 1/B/9:14, 1/B/66:67, 1/B/111:112 | No text annotation Not in a motif group | homologous J3_5TBW_045 NA | |
| J3_6N8O_027 | 1/B/9:14, 1/B/66:68, 1/B/110:112 | No text annotation Not in a motif group | ||
| J3_6N8O_028 | 1/C/43:45, 1/C/58:68, 1/C/91:101 | No text annotation Not in a motif group | ||
| J4_6N8O_001 | 1/A/112:113, 1/A/267:272, 1/A/293:299, 1/A/316:319 | No text annotation Not in a motif group | ||
| J4_6N8O_002 | 1/A/185:189, 1/A/205:208, 1/A/212:214, 1/A/226:231 | No text annotation Not in a motif group | ||
| J4_6N8O_003 | 1/A/1451:1457, 1/A/1475:1476, 1/A/1877:1880, 1/A/2352:2353 | No text annotation Not in a motif group | ||
| J4_6N8O_004 | 1/A/1492:1496, 1/A/1520:1525, 1/A/1614:1615, 1/A/1829:1836 | No text annotation Not in a motif group | ||
| J4_6N8O_005 | 1/A/1674:1675, 1/A/1693:1698, 1/A/1747:1753, 1/A/1772:1773 | No text annotation Not in a motif group | ||
| J4_6N8O_006 | 1/A/2130:2134, 1/A/2146:2150, 1/A/2186:2190, 1/A/2317:2322 | No text annotation Not in a motif group | ||
| J4_6N8O_007 | 1/A/2192:2194, 1/A/2248:2249, 1/A/2267:2276, 1/A/2310:2315 | No text annotation Not in a motif group | ||
| J4_6N8O_008 | 1/A/2654:2658, 1/A/2712:2716, 1/A/2740:2742, 1/A/2751:2753 | No text annotation Not in a motif group | ||
| J4_6N8O_009 | 1/A/3010:3012, 1/A/3042:3043, 1/A/3098:3100, 1/A/3134:3136 | No text annotation Not in a motif group | ||
| J5_6N8O_001 | 1/A/20:22, 1/C/35:42, 1/C/102:107, 1/C/115:116, 1/C/137:139 | No text annotation Not in a motif group | ||
| J5_6N8O_002 | 1/A/658:663, 1/A/799:803, 1/A/940:944, 1/A/1375:1376, 1/A/1431:1437 | No text annotation Not in a motif group | ||
| J5_6N8O_003 | 1/A/675:678, 1/A/702:706, 1/A/713:721, 1/A/749:751, 1/A/782:787 | No text annotation Not in a motif group | ||
| J5_6N8O_004 | 1/A/1492:1496, 1/A/1520:1531, 1/A/1591:1595, 1/A/1612:1615, 1/A/1829:1836 | No text annotation Not in a motif group | ||
| J5_6N8O_005 | 1/A/1906:1914, 1/A/1938:1939, 1/A/2109:2110, 1/A/2114:2122, 1/A/2331:2333 | No text annotation Not in a motif group | ||
| J5_6N8O_006 | 1/A/2399:2406, 1/A/2815:2823, 1/A/2867:2876, 1/A/2951:2957, 1/A/2975:2980 | No text annotation Not in a motif group | ||
| J5_6N8O_007 | 1/A/2415:2420, 1/A/2610:2614, 1/A/2627:2628, 1/A/2650:2651, 1/A/2798:2805 | No text annotation Not in a motif group | ||
| J6_6N8O_001 | 1/A/22:27, 1/A/58:68, 1/A/75:79, 1/A/106:110, 1/A/321:331, 1/C/32:35 | No text annotation Not in a motif group | ||
| J6_6N8O_002 | 1/A/2415:2420, 1/A/2610:2614, 1/A/2627:2628, 1/A/2650:2653, 1/A/2754:2765, 1/A/2793:2805 | No text annotation Not in a motif group | ||
| J7_6N8O_001 | 1/A/949:954, 1/A/967:968, 1/A/1114:1117, 1/A/1141:1146, 1/A/1157:1161, 1/A/1338:1339, 1/A/1365:1370 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6N8O_001 | No text annotation | ||
| J3_6N8O_004 | No text annotation | ||
| J3_6N8O_005 | No text annotation | ||
| J3_6N8O_006 | No text annotation | ||
| J3_6N8O_007 | No text annotation | ||
| J3_6N8O_008 | No text annotation | ||
| J3_6N8O_009 | No text annotation | ||
| J3_6N8O_010 | No text annotation | ||
| J3_6N8O_011 | No text annotation | ||
| J3_6N8O_012 | No text annotation | ||
| J3_6N8O_013 | No text annotation |
Coloring options: