Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6N8O_0011/A/38:45No text annotation
homologous
HL_5TBW_001
NA
HL_6N8O_0021/A/69:74No text annotation
homologous
HL_5TBW_002
NA
HL_6N8O_0031/A/90:96No text annotation
homologous
HL_8C3A_003
NA
HL_6N8O_0041/A/132:136No text annotation
homologous
HL_5TBW_004
NA
HL_6N8O_0051/A/194:201T-loop with 2 stacked bulged bases
homologous
HL_8C3A_005
NA
HL_6N8O_0061/A/208:212No text annotation
homologous
HL_5TBW_006
NA
HL_6N8O_0071/A/216:224T-loop with unstacked turn
homologous
HL_5TBW_007
NA
HL_6N8O_0081/A/278:287No text annotation
homologous
HL_5TBW_008
NA
HL_6N8O_0091/A/303:312Pseudoknot geometry
homologous
HL_8C3A_009
NA
HL_6N8O_0101/A/357:362GNRA
homologous
HL_8C3A_010
NA
HL_6N8O_0111/A/382:387GNRA
homologous
HL_8C3A_011
NA
HL_6N8O_0121/A/542:549No text annotation
HL_6N8O_0131/A/599:604GNRA
homologous
HL_5TBW_013
NA
HL_6N8O_0141/A/640:649T-loop with 2 stacked bulged bases
homologous
HL_8C3A_014
NA
HL_6N8O_0151/A/686:694No text annotation
homologous
HL_5TBW_015
NA
HL_6N8O_0161/A/707:712GNRA
homologous
HL_8C3A_016
NA
HL_6N8O_0171/A/732:737GNRA
homologous
HL_5TBW_017
NA
HL_6N8O_0181/A/763:768No text annotation
homologous
HL_5TBW_018
NA
HL_6N8O_0191/A/844:849GNRA
homologous
HL_5TBW_019
NA
HL_6N8O_0201/A/876:885No text annotation
homologous
HL_5TBW_020
NA
HL_6N8O_0211/A/910:918No text annotation
homologous
HL_5TBW_021
NA
HL_6N8O_0221/A/958:963Externally structured
homologous
HL_5TBW_022
NA
HL_6N8O_0231/A/1023:1029GNRA
homologous
HL_5TBW_023
NA
HL_6N8O_0241/A/1076:1083No text annotation
homologous
HL_5TBW_024
NA
HL_6N8O_0251/A/1126:1132GNRA
homologous
HL_5TBW_025
NA
HL_6N8O_0261/A/1148:1155No text annotation
homologous
HL_5TBW_026
NA
HL_6N8O_0271/A/1234:1254No text annotation
HL_6N8O_0281/A/1267:1274GNRA wlth tandem sheared
homologous
HL_8C3A_028
NA
HL_6N8O_0291/A/1347:1357No text annotation
HL_6N8O_0301/A/1403:1408GNRA
homologous
HL_5TBW_030
NA
HL_6N8O_0801/A/1462:1470T-loop with 2 stacked bulged bases
homologous
HL_8C3A_031
NA
HL_6N8O_0321/A/1506:1512Pseudoknot geometry with 3' bulge
homologous
HL_5TBW_032
NA
HL_6N8O_0331/A/1544:1549GNRA variation
homologous
HL_5TBW_033
NA
HL_6N8O_0341/A/1561:1578No text annotation
HL_6N8O_0351/A/1599:1608No text annotation
homologous
HL_5TBW_035
NA
HL_6N8O_0361/A/1634:1639GNRA
homologous
HL_8C3A_036
NA
HL_6N8O_0371/A/1680:1688No text annotation
homologous
HL_5TBW_037
NA
HL_6N8O_0381/A/1719:1725No text annotation
homologous
HL_5TBW_038
NA
HL_6N8O_0881/A/1759:1766No text annotation
homologous
HL_8P9A_150
HL_25967.2
HL_6N8O_0401/A/1792:1796No text annotation
homologous
HL_8C3A_040
NA
HL_6N8O_0411/A/1844:1851No text annotation
homologous
HL_5TBW_041
NA
HL_6N8O_0421/A/1862:1868GNRA
homologous
HL_5TBW_042
NA
HL_6N8O_0431/A/1923:1928UNCG
homologous
HL_8C3A_043
NA
HL_6N8O_0451/A/2110:2114No text annotation
homologous
HL_5TBW_045
NA
HL_6N8O_0461/A/2135:2145No text annotation
homologous
HL_8C3A_046
NA
HL_6N8O_0471/A/2164:2170GNRA
homologous
HL_8C3A_047
NA
HL_6N8O_0481/A/2220:2225GNRA
homologous
HL_8C3A_048
NA
HL_6N8O_0491/A/2254:2262No text annotation
HL_6N8O_0501/A/2292:2300No text annotation
homologous
HL_5TBW_050
NA
HL_6N8O_0891/A/2369:2378No text annotation
homologous
HL_8P9A_162
HL_61996.2
HL_6N8O_0521/A/2465:2490No text annotation
HL_6N8O_0901/A/2535:2544No text annotation
HL_6N8O_0911/A/2568:2573No text annotation
HL_6N8O_0551/A/2616:2624No text annotation
homologous
HL_5TBW_054
NA
HL_6N8O_0561/A/2633:2645No text annotation
homologous
HL_5TBW_055
NA
HL_6N8O_0571/A/2673:2681No text annotation
homologous
HL_5TBW_056
NA
HL_6N8O_0581/A/2693:2700Pseudoknot geometry
homologous
HL_5TBW_057
NA
HL_6N8O_0591/A/2724:2732No text annotation
homologous
HL_8C3A_059
NA
HL_6N8O_0601/A/2744:2749GNRA
homologous
HL_5TBW_059
NA
HL_6N8O_0611/A/2776:2784Pseudoknot geometry
homologous
HL_8C3A_061
NA
HL_6N8O_0621/A/2840:2848No text annotation
homologous
HL_5TBW_061
NA
HL_6N8O_0631/A/2897:2904No text annotation
homologous
HL_5TBW_062
NA
HL_6N8O_0641/A/2920:2926No text annotation
geometric
HL_5TBW_063
NA
HL_6N8O_0651/A/2963:2968GNRA
homologous
HL_5TBW_064
NA
HL_6N8O_0661/A/3025:3030GNRA
geometric
HL_4V9F_066
HL_37824.7
HL_6N8O_0671/A/3068:3073Ribsomal LSU H95
homologous
HL_5TBW_066
NA
HL_6N8O_0681/A/3110:3124No text annotation
homologous
HL_5TBW_067
NA
HL_6N8O_0691/A/3194:3197No text annotation
geometric
HL_6U8D_003
HL_32346.3
HL_6N8O_0701/A/3240:3247No text annotation
homologous
HL_5TBW_069
NA
HL_6N8O_0711/A/3303:3311No text annotation
geometric
HL_5TBW_070
NA
HL_6N8O_0721/A/3348:3357No text annotation
HL_6N8O_0861/B/32:45No text annotation
homologous
HL_8C3A_228
NA
HL_6N8O_0731/B/36:41No text annotation
geometric
HL_5TBW_185
NA
HL_6N8O_0741/B/88:93GNRA
homologous
HL_5TBW_186
NA
HL_6N8O_0871/C/47:56No text annotation
homologous
HL_8P9A_186
HL_93438.2
HL_6N8O_0751/C/69:89No text annotation
homologous
HL_8P4V_073
NA
HL_6N8O_0761/C/108:114No text annotation
homologous
HL_5TBW_075
NA
HL_6N8O_0771/C/124:129No text annotation
homologous
HL_5TBW_076
NA

Problematic loops

#loop idProblemSequence
HL_6N8O_078tRNA anticodon loop
HL_6N8O_079No text annotation
HL_6N8O_031No text annotation
HL_6N8O_081No text annotation
HL_6N8O_082No text annotation
HL_6N8O_039No text annotation
HL_6N8O_044No text annotation
HL_6N8O_051No text annotation
HL_6N8O_083No text annotation
HL_6N8O_053No text annotation
HL_6N8O_054No text annotation
HL_6N8O_084No text annotation
HL_6N8O_085No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6N8O_0021/A/7:8,
1/C/150:152
Single bulged C
homologous
IL_5TBW_002
NA
IL_6N8O_0031/A/13:15,
1/C/144:145
Single bulged U
homologous
IL_8C3A_003
NA
IL_6N8O_0041/A/27:28,
1/A/56:58
No text annotation
homologous
IL_8C3A_004
NA
IL_6N8O_0051/A/31:38,
1/A/45:53
tSH-tHW-tHH-tHS
geometric
IL_5TBW_005
NA
IL_6N8O_0061/A/82:89,
1/A/97:103
8x7 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_006
NA
IL_6N8O_0071/A/123:124,
1/A/144:149
No text annotation
geometric
IL_5TBW_007
NA
IL_6N8O_0081/A/125:127,
1/A/141:143
Isolated non-canonical cWW pair
homologous
IL_5TBW_008
NA
IL_6N8O_1631/A/163:165,
1/A/257:258
Single stack bend
homologous
IL_8P9A_238
IL_90729.1
IL_6N8O_1641/A/169:171,
1/A/247:253
No text annotation
IL_6N8O_0111/A/177:178,
1/A/238:241
Major groove platform
geometric
IL_7A0S_073
IL_48076.6
IL_6N8O_0121/A/189:191,
1/A/204:205
Single bulged U
homologous
IL_8C3A_013
NA
IL_6N8O_0131/A/337:339,
1/C/25:26
Single bulged A
homologous
IL_5TBW_013
NA
IL_6N8O_0141/A/376:379,
1/A/390:403
No text annotation
homologous
IL_5TBW_014
NA
IL_6N8O_0151/A/404:410,
1/C/13:19
Triple sheared with non-canonical cWW
homologous
IL_5TBW_015
NA
IL_6N8O_0161/A/429:431,
1/A/628:630
Isolated non-canonical cWW pair
homologous
IL_5TBW_016
NA
IL_6N8O_0181/A/512:513,
1/A/577:579
Single bulged A
homologous
IL_5TBW_018
NA
IL_6N8O_0191/A/517:525,
1/A/567:573
No text annotation
homologous
IL_5TBW_019
NA
IL_6N8O_0201/A/531:538,
1/A/553:561
No text annotation
homologous
IL_5TBW_020
NA
IL_6N8O_0211/A/668:670,
1/A/792:794
Isolated non-canonical cWW pair
homologous
IL_5TBW_021
NA
IL_6N8O_0221/A/680:684,
1/A/696:700
No text annotation
homologous
IL_5TBW_022
NA
IL_6N8O_0231/A/725:728,
1/A/741:745
UAA/GAN
homologous
IL_5TBW_023
NA
IL_6N8O_0241/A/752:753,
1/A/779:781
Single bulged A
homologous
IL_5TBW_024
NA
IL_6N8O_1651/A/755:756,
1/A/775:777
No text annotation
homologous
IL_8CRE_027
IL_89505.4
IL_6N8O_0261/A/758:763,
1/A/768:773
No text annotation
geometric
IL_5TBW_026
NA
IL_6N8O_0271/A/803:805,
1/A/938:940
Isolated non-canonical cWW pair
geometric
IL_5TBW_027
NA
IL_6N8O_0281/A/805:809,
1/A/931:938
tHW-tHW cross-strand stack
homologous
IL_5TBW_028
NA
IL_6N8O_0291/A/833:834,
1/A/859:861
Single bulged G
geometric
IL_5TBW_029
NA
IL_6N8O_0301/A/834:838,
1/A/855:859
Triple sheared
homologous
IL_5TBW_030
NA
IL_6N8O_1661/A/869:872,
1/A/888:890
No text annotation
homologous
IL_8P9A_259
IL_51387.2
IL_6N8O_0321/A/873:875,
1/A/886:887
Single bulged U
homologous
IL_5TBW_032
NA
IL_6N8O_0331/A/907:909,
1/A/919:923
No text annotation
homologous
IL_8C3A_036
NA
IL_6N8O_0341/A/954:956,
1/A/965:967
Isolated non-canonical cWW pair
homologous
IL_8C3A_037
NA
IL_6N8O_0351/A/969:970,
1/A/1111:1113
Single stack bend
homologous
IL_5TBW_035
NA
IL_6N8O_0361/A/977:981,
1/A/1102:1104
No text annotation
homologous
IL_8P9A_264
IL_25463.1
IL_6N8O_0371/A/983:985,
1/A/1099:1100
Single bulged G
homologous
IL_8C3A_040
NA
IL_6N8O_0381/A/991:997,
1/A/1052:1058
7x7 Sarcin-Ricin with intercalated A; G-bulge
geometric
IL_5TBW_038
NA
IL_6N8O_1671/A/991:998,
1/A/1050:1058
No text annotation
IL_6N8O_0391/A/997:998,
1/A/1050:1052
Minor groove platform
homologous
IL_5TBW_039
NA
IL_6N8O_0401/A/999:1004,
1/A/1046:1049
C-loop
homologous
IL_5TBW_040
NA
IL_6N8O_0411/A/1006:1009,
1/A/1041:1044
Tandem non-canonical cWW pairs
homologous
IL_5TBW_041
NA
IL_6N8O_0421/A/1009:1011,
1/A/1039:1041
Isolated non-canonical cWW pair
geometric
IL_4LFB_006
IL_87907.2
IL_6N8O_0431/A/1014:1018,
1/A/1034:1036
Decoding loop related
geometric
IL_3C3Z_002
IL_31737.3
IL_6N8O_0441/A/1069:1071,
1/A/1087:1089
Isolated non-canonical cWW pair
homologous
IL_5TBW_044
NA
IL_6N8O_0451/A/1074:1076,
1/A/1083:1084
Single bulged G
homologous
IL_8C3A_048
NA
IL_6N8O_0461/A/1120:1122,
1/A/1136:1138
Isolated non-canonical cWW pair
homologous
IL_5TBW_046
NA
IL_6N8O_0471/A/1167:1171,
1/A/1328:1332
UAA/GAN
homologous
IL_5TBW_048
NA
IL_6N8O_0481/A/1173:1180,
1/A/1325:1326
SSU/LSU pseudoknot
homologous
IL_5TBW_049
NA
IL_6N8O_0491/A/1180:1182,
1/A/1324:1325
Single bulged U
geometric
IL_5TBW_050
NA
IL_6N8O_0501/A/1187:1194,
1/A/1314:1319
No text annotation
geometric
IL_5TBW_051
NA
IL_6N8O_0511/A/1194:1205,
1/A/1299:1314
No text annotation
geometric
IL_5TBW_052
NA
IL_6N8O_0521/A/1207:1209,
1/A/1296:1297
Single bulged U
homologous
IL_5TBW_053
NA
IL_6N8O_0531/A/1218:1229,
1/A/1280:1287
No text annotation
IL_6N8O_0541/A/1262:1266,
1/A/1275:1277
Major groove platform with extra cWW
homologous
IL_8C3A_059
NA
IL_6N8O_0551/A/1376:1378,
1/A/1428:1431
Isolated cWS basepair
homologous
IL_5TBW_057
NA
IL_6N8O_0561/A/1385:1387,
1/A/1420:1421
Single bulged A
homologous
IL_5TBW_058
NA
IL_6N8O_0571/A/1388:1395,
1/A/1415:1419
Kink-turn
homologous
IL_5TBW_059
NA
IL_6N8O_0581/A/1398:1400,
1/A/1411:1412
Single bulged A
homologous
IL_5TBW_060
NA
IL_6N8O_0591/A/1444:1450,
1/A/2354:2359
7x6 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_061
NA
IL_6N8O_1441/A/1501:1505,
1/A/1513:1515
C-loop
homologous
IL_8C3A_482
NA
IL_6N8O_0611/A/1532:1536,
1/A/1585:1590
UAA/GAN
homologous
IL_8C3A_067
NA
IL_6N8O_1451/A/1537:1542,
1/A/1551:1584
No text annotation
IL_6N8O_0621/A/1618:1621,
1/A/1824:1826
Other IL
homologous
IL_5TBW_064
NA
IL_6N8O_0631/A/1623:1624,
1/A/1819:1822
Multiple bulged bases
geometric
IL_4V9F_021
IL_82107.4
IL_6N8O_0641/A/1627:1631,
1/A/1811:1816
No text annotation
homologous
IL_8C3A_072
NA
IL_6N8O_0651/A/1645:1649,
1/A/1806:1810
Triple sheared
homologous
IL_5TBW_067
NA
IL_6N8O_0661/A/1661:1663,
1/A/1786:1788
Isolated non-canonical cWW pair
homologous
IL_5TBW_068
NA
IL_6N8O_0671/A/1669:1670,
1/A/1778:1780
Single bulged C
geometric
IL_5TBW_069
NA
IL_6N8O_0681/A/1670:1671,
1/A/1776:1778
Single stack bend
homologous
IL_5TBW_070
NA
IL_6N8O_0691/A/1694:1698,
1/A/1747:1752
No text annotation
homologous
IL_5TBW_071
NA
IL_6N8O_0701/A/1702:1707,
1/A/1737:1743
No text annotation
homologous
IL_5TBW_072
NA
IL_6N8O_0711/A/1711:1717,
1/A/1727:1733
Kink-turn
homologous
IL_5TBW_073
NA
IL_6N8O_1461/A/1883:1889,
1/A/2346:2349
No text annotation
homologous
IL_8P9A_302
IL_22829.2
IL_6N8O_0731/A/1895:1897,
1/A/2338:2340
No text annotation
homologous
IL_8C3A_081
NA
IL_6N8O_0741/A/1898:1901,
1/A/2336:2337
Major groove platform; stack outside cWW
geometric
IL_7RQB_066
NA
IL_6N8O_1471/A/1898:1906,
1/A/2333:2337
No text annotation
homologous
IL_8C3A_484
NA
IL_6N8O_0751/A/1901:1906,
1/A/2333:2336
No text annotation
homologous
IL_8C3A_083
NA
IL_6N8O_0761/A/1918:1923,
1/A/1928:1934
tSH-tSH-tHH-tHS
geometric
IL_5TBW_078
NA
IL_6N8O_0771/A/1940:1942,
1/A/2106:2108
Isolated non-canonical cWW pair
homologous
IL_8C3A_085
NA
IL_6N8O_0781/A/1947:1948,
1/A/2098:2101
No text annotation
homologous
IL_8C3A_086
NA
IL_6N8O_0791/A/2128:2129,
1/A/2323:2325
Single bulged A
homologous
IL_8C3A_087
NA
IL_6N8O_0801/A/2156:2161,
1/A/2173:2180
Kink-turn related
homologous
IL_5TBW_083
NA
IL_6N8O_0811/A/2196:2199,
1/A/2245:2246
No text annotation
homologous
IL_8C3A_089
NA
IL_6N8O_0821/A/2200:2201,
1/A/2241:2244
Major groove intercalation
geometric
IL_7A0S_067
IL_66635.5
IL_6N8O_0831/A/2204:2206,
1/A/2237:2238
Single bulged U
homologous
IL_5TBW_086
NA
IL_6N8O_0841/A/2206:2210,
1/A/2235:2237
Major groove platform with extra pair
geometric
IL_5TBW_087
NA
IL_6N8O_0851/A/2211:2217,
1/A/2228:2234
No text annotation
homologous
IL_8C3A_093
NA
IL_6N8O_0861/A/2276:2277,
1/A/2307:2310
Bulged stacked bases
homologous
IL_5TBW_089
NA
IL_6N8O_0871/A/2277:2288,
1/A/2304:2307
No text annotation
geometric
IL_5TBW_090
NA
IL_6N8O_0881/A/2391:2394,
1/A/2986:2988
No text annotation
homologous
IL_8C3A_096
NA
IL_6N8O_0891/A/2396:2398,
1/A/2981:2984
Major groove platform with intercalation
homologous
IL_5TBW_092
NA
IL_6N8O_0901/A/2409:2411,
1/A/2811:2812
Single bulged U
homologous
IL_8C3A_098
NA
IL_6N8O_0911/A/2412:2413,
1/A/2807:2810
Minor groove platform
homologous
IL_5TBW_094
NA
IL_6N8O_0921/A/2423:2425,
1/A/2604:2607
No text annotation
homologous
IL_8C3A_100
NA
IL_6N8O_1681/A/2440:2442,
1/A/2505:2507
Isolated cWH basepair
geometric
IL_406D_004
IL_10167.5
IL_6N8O_1691/A/2444:2445,
1/A/2501:2503
Single stack bend
geometric
IL_9DFE_057
IL_26793.1
IL_6N8O_0951/A/2448:2463,
1/A/2492:2498
No text annotation
IL_6N8O_0961/A/2520:2526,
1/A/2584:2587
No text annotation
homologous
IL_5TBW_096
NA
IL_6N8O_0971/A/2614:2615,
1/A/2625:2627
Single bulged A
homologous
IL_5TBW_098
NA
IL_6N8O_0981/A/2666:2668,
1/A/2686:2690
Isolated tHS basepair with bulges
homologous
IL_5TBW_099
NA
IL_6N8O_0991/A/2718:2721,
1/A/2735:2738
Tandem non-canonical cWW pairs
homologous
IL_5TBW_100
NA
IL_6N8O_1001/A/2770:2773,
1/A/2787:2788
Single stack bend with bulge
homologous
IL_8C3A_110
NA
IL_6N8O_1011/A/2823:2824,
1/A/2865:2867
Major groove platform
homologous
IL_5TBW_102
NA
IL_6N8O_1531/A/2823:2826,
1/A/2863:2867
No text annotation
homologous
IL_8C3A_111
NA
IL_6N8O_1021/A/2824:2826,
1/A/2863:2865
Isolated non-canonical cWW pair
geometric
IL_5TBW_103
NA
IL_6N8O_1031/A/2826:2828,
1/A/2862:2863
Major groove platform
homologous
IL_5TBW_104
NA
IL_6N8O_1041/A/2828:2830,
1/A/2858:2862
Major groove minor groove platform with extra cWW
geometric
IL_5TBW_105
NA
IL_6N8O_1701/A/2835:2839,
1/A/2849:2853
No text annotation
homologous
IL_8CRE_114
IL_17948.2
IL_6N8O_1061/A/2876:2877,
1/A/2949:2951
Major groove platform
homologous
IL_5TBW_107
NA
IL_6N8O_1071/A/2879:2881,
1/A/2943:2947
Isolated non-canonical cWW with bulges
geometric
IL_5TBW_108
NA
IL_6N8O_1081/A/2881:2882,
1/A/2940:2943
Multiple bulged bases
homologous
IL_5TBW_109
NA
IL_6N8O_1091/A/2889:2891,
1/A/2912:2914
Isolated non-canonical cWW pair
geometric
IL_5TBW_110
NA
IL_6N8O_1551/A/2889:2892,
1/A/2909:2914
No text annotation
homologous
IL_8P9A_338
IL_07469.2
IL_6N8O_1101/A/2891:2892,
1/A/2909:2912
Major groove platform with intercalation
homologous
IL_5TBW_111
NA
IL_6N8O_1111/A/2918:2920,
1/A/2926:2928
Isolated non-canonical cWW pair
homologous
IL_5TBW_112
NA
IL_6N8O_1121/A/2960:2961,
1/A/2970:2972
Single bulged A
homologous
IL_5TBW_113
NA
IL_6N8O_1131/A/3004:3007,
1/A/3139:3144
Double sheared
homologous
IL_5TBW_114
NA
IL_6N8O_1141/A/3012:3014,
1/A/3040:3042
Isolated non-canonical cWW pair
homologous
IL_8C3A_124
NA
IL_6N8O_1151/A/3018:3025,
1/A/3030:3036
8x7 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_116
NA
IL_6N8O_1161/A/3047:3051,
1/A/3091:3094
Major groove minor groove platform with tHH
homologous
IL_5TBW_117
NA
IL_6N8O_1171/A/3054:3059,
1/A/3084:3088
UAA/GAN related
homologous
IL_5TBW_118
NA
IL_6N8O_1181/A/3063:3064,
1/A/3077:3080
Multiple bulged bases
homologous
IL_5TBW_119
NA
IL_6N8O_1191/A/3103:3107,
1/A/3127:3131
UAA/GAN
homologous
IL_5TBW_120
NA
IL_6N8O_1201/A/3164:3166,
1/A/3284:3286
Isolated non-canonical cWW pair
homologous
IL_8C3A_130
NA
IL_6N8O_1211/A/3168:3170,
1/A/3280:3282
Isolated non-canonical cWW pair
homologous
IL_5TBW_122
NA
IL_6N8O_1221/A/3177:3179,
1/A/3210:3211
Single bulged A
geometric
IL_5TBW_123
NA
IL_6N8O_1231/A/3179:3188,
1/A/3204:3210
No text annotation
homologous
IL_5TBW_124
NA
IL_6N8O_1241/A/3193:3194,
1/A/3197:3199
Single bulged U
homologous
IL_5TBW_125
NA
IL_6N8O_1251/A/3225:3229,
1/A/3258:3260
No text annotation
homologous
IL_5TBW_126
NA
IL_6N8O_1261/A/3233:3235,
1/A/3252:3254
Isolated non-canonical cWW pair
geometric
IL_3DIL_006
IL_87907.2
IL_6N8O_1271/A/3235:3238,
1/A/3249:3252
Tandem non-canonical cWW pairs
homologous
IL_5TBW_128
NA
IL_6N8O_1281/A/3300:3303,
1/A/3311:3314
Tandem non-canonical cWW pairs
homologous
IL_5TBW_129
NA
IL_6N8O_1291/A/3318:3320,
1/A/3387:3388
Single bulged U
homologous
IL_8C3A_136
NA
IL_6N8O_1301/A/3324:3325,
1/A/3381:3383
Single bulged U
homologous
IL_5TBW_131
NA
IL_6N8O_1311/A/3328:3330,
1/A/3373:3378
No text annotation
homologous
IL_8C3A_138
NA
IL_6N8O_1321/A/3332:3337,
1/A/3367:3371
No text annotation
homologous
IL_5TBW_133
NA
IL_6N8O_1601/A/3340:3342,
1/A/3363:3364
Single bulged U
homologous
IL_8C3A_140
NA
IL_6N8O_1711/A/3342:3345,
1/A/3360:3363
Double sheared; A in syn
homologous
IL_8P9A_362
IL_09705.15
IL_6N8O_1341/B/15:16,
1/B/63:65
Single bulged A
homologous
IL_5TBW_372
NA
IL_6N8O_1351/B/21:27,
1/B/53:58
Minor groove platform related
homologous
IL_5TBW_373
NA
IL_6N8O_1721/B/28:29,
1/B/49:52
No text annotation
homologous
IL_8OI5_136
IL_15052.4
IL_6N8O_1371/B/29:30,
1/B/47:49
Single stack bend
geometric
IL_5TBW_375
NA
IL_6N8O_1381/B/32:36,
1/B/41:45
Symmetric double minor groove platform
homologous
IL_5TBW_376
NA
IL_6N8O_1391/B/72:80,
1/B/100:106
8x7 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_377
NA
IL_6N8O_1401/B/84:87,
1/B/94:96
Isolated non-canonical cWW pair
homologous
IL_5TBW_378
NA
IL_6N8O_1731/C/64:66,
1/C/93:96
No text annotation
geometric
IL_8P9A_371
IL_07785.1
IL_6N8O_1411/C/68:69,
1/C/89:91
Single bulged U
homologous
IL_5TBW_146
NA

Problematic loops

#loop idProblemSequence
IL_6N8O_001No text annotation
IL_6N8O_009Other IL
IL_6N8O_010No text annotation
IL_6N8O_017Kink-turn related
IL_6N8O_025Isolated non-canonical cWW pair
IL_6N8O_031No text annotation
IL_6N8O_142No text annotation
IL_6N8O_143No text annotation
IL_6N8O_060No text annotation
IL_6N8O_072No text annotation
IL_6N8O_148No text annotation
IL_6N8O_149No text annotation
IL_6N8O_093No text annotation
IL_6N8O_150No text annotation
IL_6N8O_094No text annotation
IL_6N8O_151No text annotation
IL_6N8O_152No text annotation
IL_6N8O_154No text annotation
IL_6N8O_105No text annotation
IL_6N8O_156Isolated non-canonical cWW pair
IL_6N8O_157No text annotation
IL_6N8O_158No text annotation
IL_6N8O_159Tandem non-canonical cWW pairs
IL_6N8O_133No text annotation
IL_6N8O_161No text annotation
IL_6N8O_162No text annotation
IL_6N8O_136No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6N8O_0011/A/113:123,
1/A/149:158,
1/A/263:267
No text annotation
homologous
J3_8C3A_001
NA
J3_6N8O_0161/A/113:124,
1/A/144:158,
1/A/263:267
No text annotation
J3_6N8O_0171/A/340:356,
1/A/363:368,
1/C/21:24
No text annotation
homologous
J3_8C3A_047
NA
J3_6N8O_0021/A/369:376,
1/A/403:404,
1/C/19:20
No text annotation
homologous
J3_5TBW_002
NA
J3_6N8O_0181/A/369:379,
1/A/390:404,
1/C/19:20
No text annotation
homologous
J3_8P9A_047
J3_92134.2
J3_6N8O_0031/A/502:503,
1/A/588:597,
1/A/606:611
No text annotation
homologous
J3_5TBW_003
NA
J3_6N8O_0041/A/814:820,
1/A/905:907,
1/A/923:926
No text annotation
homologous
J3_8C3A_003
NA
J3_6N8O_0051/A/828:831,
1/A/863:867,
1/A/892:897
No text annotation
homologous
J3_5TBW_005
NA
J3_6N8O_0201/A/986:987,
1/A/1062:1066,
1/A/1092:1098
No text annotation
homologous
J3_8P9A_051
J3_09667.1
J3_6N8O_0061/A/1230:1232,
1/A/1256:1262,
1/A/1277:1279
No text annotation
homologous
J3_5TBW_007
NA
J3_6N8O_0071/A/1479:1485,
1/A/1857:1859,
1/A/1871:1874
No text annotation
homologous
J3_8C3A_006
NA
J3_6N8O_0081/A/1488:1491,
1/A/1837:1843,
1/A/1852:1854
No text annotation
homologous
J3_5TBW_009
NA
J3_6N8O_0091/A/1526:1531,
1/A/1591:1595,
1/A/1612:1613
No text annotation
homologous
J3_5TBW_010
NA
J3_6N8O_0291/A/1631:1632,
1/A/1641:1645,
1/A/1810:1811
No text annotation
homologous
J3_8P9A_087
J3_75962.2
J3_6N8O_0221/A/1654:1658,
1/A/1791:1792,
1/A/1796:1801
No text annotation
homologous
J3_8P9A_058
J3_12393.2
J3_6N8O_0111/A/2432:2435,
1/A/2512:2517,
1/A/2590:2597
No text annotation
homologous
J3_5TBW_012
NA
J3_6N8O_0301/A/2529:2532,
1/A/2547:2563,
1/A/2578:2581
No text annotation
homologous
J3_8CRE_020
J3_28639.1
J3_6N8O_0241/A/2651:2653,
1/A/2754:2765,
1/A/2793:2798
No text annotation
homologous
J3_8P9A_061
J3_20992.1
J3_6N8O_0121/A/2664:2666,
1/A/2690:2692,
1/A/2701:2706
No text annotation
homologous
J3_8C3A_010
NA
J3_6N8O_0251/A/2664:2668,
1/A/2686:2692,
1/A/2701:2706
No text annotation
J3_6N8O_0131/A/2886:2889,
1/A/2914:2916,
1/A/2930:2936
No text annotation
homologous
J3_8C3A_011
NA
J3_6N8O_0261/A/3171:3176,
1/A/3212:3220,
1/A/3265:3279
No text annotation
homologous
J3_8P9A_064
J3_03190.1
J3_6N8O_0141/A/3298:3300,
1/A/3314:3318,
1/A/3388:3390
No text annotation
homologous
J3_5TBW_015
NA
J3_6N8O_0151/B/9:14,
1/B/66:67,
1/B/111:112
No text annotation
homologous
J3_5TBW_045
NA
J3_6N8O_0311/C/44:45,
1/C/58:64,
1/C/96:100
No text annotation
homologous
J3_8P9A_067
J3_35667.2
J4_6N8O_0011/A/112:113,
1/A/267:272,
1/A/293:299,
1/A/316:319
No text annotation
homologous
J4_8P9A_012
J4_45801.6
J4_6N8O_0021/A/185:189,
1/A/205:208,
1/A/212:214,
1/A/226:231
No text annotation
homologous
J4_8P9A_013
J4_12410.1
J4_6N8O_0031/A/1451:1457,
1/A/1475:1476,
1/A/1877:1880,
1/A/2352:2353
No text annotation
homologous
J4_8P9A_014
J4_87855.1
J4_6N8O_0041/A/1492:1496,
1/A/1520:1525,
1/A/1614:1615,
1/A/1829:1836
No text annotation
homologous
J4_8P9A_015
J4_69051.6
J4_6N8O_0051/A/1674:1675,
1/A/1693:1698,
1/A/1747:1753,
1/A/1772:1773
No text annotation
J4_6N8O_0061/A/2130:2134,
1/A/2146:2150,
1/A/2186:2190,
1/A/2317:2322
No text annotation
homologous
J4_8P9A_017
J4_07509.2
J4_6N8O_0071/A/2192:2194,
1/A/2248:2249,
1/A/2267:2276,
1/A/2310:2315
No text annotation
homologous
J4_8P9A_018
J4_93343.1
J4_6N8O_0081/A/2654:2658,
1/A/2712:2716,
1/A/2740:2742,
1/A/2751:2753
No text annotation
homologous
J4_8C3A_008
NA
J4_6N8O_0091/A/3010:3012,
1/A/3042:3043,
1/A/3098:3100,
1/A/3134:3136
No text annotation
homologous
J4_8P9A_020
J4_65356.1
J5_6N8O_0011/A/20:22,
1/C/35:42,
1/C/102:107,
1/C/115:116,
1/C/137:139
No text annotation
homologous
J5_8C3A_001
NA
J5_6N8O_0081/A/658:663,
1/A/799:802,
1/A/941:944,
1/A/1375:1376,
1/A/1431:1437
No text annotation
homologous
J5_8CRE_002
J5_63811.1
J5_6N8O_0031/A/675:678,
1/A/702:706,
1/A/713:721,
1/A/749:751,
1/A/782:787
No text annotation
homologous
J5_8P9A_012
J5_23272.1
J5_6N8O_0041/A/1492:1496,
1/A/1520:1531,
1/A/1591:1595,
1/A/1612:1615,
1/A/1829:1836
No text annotation
J5_6N8O_0051/A/1906:1914,
1/A/1938:1939,
1/A/2109:2110,
1/A/2114:2122,
1/A/2331:2333
No text annotation
homologous
J5_8P9A_013
J5_62523.6
J5_6N8O_0061/A/2399:2406,
1/A/2815:2823,
1/A/2867:2876,
1/A/2951:2957,
1/A/2975:2980
No text annotation
J5_6N8O_0091/A/2416:2419,
1/A/2611:2614,
1/A/2627:2628,
1/A/2650:2651,
1/A/2798:2804
No text annotation
homologous
J5_8P9A_015
J5_08912.1
J6_6N8O_0011/A/22:27,
1/A/58:68,
1/A/75:79,
1/A/106:110,
1/A/321:331,
1/C/32:35
No text annotation
J6_6N8O_0021/A/2415:2420,
1/A/2610:2614,
1/A/2627:2628,
1/A/2650:2653,
1/A/2754:2765,
1/A/2793:2805
No text annotation
J6_6N8O_0031/A/2416:2419,
1/A/2611:2614,
1/A/2627:2628,
1/A/2650:2653,
1/A/2754:2765,
1/A/2793:2804
No text annotation
J7_6N8O_0011/A/949:954,
1/A/967:968,
1/A/1114:1117,
1/A/1141:1146,
1/A/1157:1161,
1/A/1338:1339,
1/A/1365:1370
No text annotation

Problematic loops

#loop idProblemSequence
J3_6N8O_019No text annotation
J3_6N8O_021No text annotation
J3_6N8O_010No text annotation
J3_6N8O_023No text annotation
J3_6N8O_027No text annotation
J3_6N8O_028No text annotation
J5_6N8O_002No text annotation
J5_6N8O_007No text annotation

Coloring options:
Copyright 2025 BGSU RNA group. Page generated in 0.1111 s