RNA 3D Hub //

6QTZ Internal, Hairpin and 3-way Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6QTZ_0011/A/38:45No text annotation
Not in a motif group		geometric
HL_5TBW_001
HL_06192.2
HL_6QTZ_0021/A/69:74No text annotation
Not in a motif group		homologous
HL_8C3A_002
HL_02862.2
HL_6QTZ_0031/A/90:96No text annotation
Not in a motif group		homologous
HL_8C3A_003
HL_67216.7
HL_6QTZ_0041/A/132:136No text annotation
Not in a motif group		homologous
HL_5TBW_004
HL_98426.1
HL_6QTZ_0051/A/194:201T-loop with 1 bulged base
Not in a motif group		homologous
HL_5TBW_005
HL_89380.2
HL_6QTZ_0061/A/208:212No text annotation
Not in a motif group		homologous
HL_5TBW_006
HL_98984.2
HL_6QTZ_0071/A/216:224No text annotation
Not in a motif group		homologous
HL_8C3A_007
HL_08002.8
HL_6QTZ_0081/A/278:287No text annotation
Not in a motif group		homologous
HL_8C3A_008
HL_71554.2
HL_6QTZ_0101/A/357:362No text annotation
Not in a motif group		homologous
HL_8C3A_010
HL_42097.1
HL_6QTZ_0111/A/382:387No text annotation
Not in a motif group		homologous
HL_8C3A_011
HL_42097.1
HL_6QTZ_0121/A/539:552No text annotation
Not in a motif group
HL_6QTZ_0131/A/599:604GNRA
Not in a motif group		homologous
HL_5TBW_013
HL_42097.1
HL_6QTZ_0141/A/640:649No text annotation
Not in a motif group		homologous
HL_8C3A_014
HL_89380.2
HL_6QTZ_0151/A/686:694No text annotation
Not in a motif group		homologous
HL_8C3A_015
HL_03345.1
HL_6QTZ_0171/A/732:737GNRA
Not in a motif group		homologous
HL_5TBW_017
HL_42097.1
HL_6QTZ_0221/A/958:963No text annotation
Not in a motif group		homologous
HL_8C3A_022
HL_96598.1
HL_6QTZ_0261/A/1148:1155No text annotation
Not in a motif group		homologous
HL_8C3A_026
HL_64430.2
HL_6QTZ_0291/A/1346:1358No text annotation
Not in a motif group
HL_6QTZ_0301/A/1403:1408No text annotation
Not in a motif group		homologous
HL_8C3A_030
HL_42097.1
HL_6QTZ_0651/A/3025:3030No text annotation
Not in a motif group		geometric
HL_5J7L_179
HL_42097.1
HL_6QTZ_0661/A/3068:3073Ribsomal LSU H95
Not in a motif group		homologous
HL_5TBW_066
HL_46680.1
HL_6QTZ_0671/A/3110:3124No text annotation
Not in a motif group		homologous
HL_8C3A_068
HL_56677.7
HL_6QTZ_0681/A/3193:3199No text annotation
Not in a motif group		geometric
HL_5J7L_018
HL_34168.2
HL_6QTZ_0701/A/3303:3311No text annotation
Not in a motif group		geometric
HL_5TBW_070
HL_27930.1
HL_6QTZ_0721/x/36:41No text annotation
Not in a motif group		homologous
HL_5TBW_185
HL_87939.1
HL_6QTZ_0731/x/88:93GNRA
Not in a motif group		homologous
HL_5TBW_186
HL_42097.1
HL_6QTZ_0741/y/47:56No text annotation
Not in a motif group		geometric
HL_7A0S_001
HL_99167.1
HL_6QTZ_0751/y/69:89No text annotation
Not in a motif group		geometric
HL_3HJW_001
HL_40310.1
HL_6QTZ_0761/y/108:114No text annotation
Not in a motif group		homologous
HL_5TBW_075
HL_87939.1
HL_6QTZ_0771/y/124:129No text annotation
Not in a motif group		homologous
HL_5TBW_076
HL_96851.2

Problematic loops

#loop idProblemSequence
HL_6QTZ_009No text annotation
HL_6QTZ_016No text annotation
HL_6QTZ_018No text annotation
HL_6QTZ_019No text annotation
HL_6QTZ_020No text annotation
HL_6QTZ_021No text annotation
HL_6QTZ_023GNRA
HL_6QTZ_024No text annotation
HL_6QTZ_025No text annotation
HL_6QTZ_027No text annotation
HL_6QTZ_028No text annotation
HL_6QTZ_031No text annotation
HL_6QTZ_032No text annotation
HL_6QTZ_033No text annotation
HL_6QTZ_034No text annotation
HL_6QTZ_035No text annotation
HL_6QTZ_036No text annotation
HL_6QTZ_037No text annotation
HL_6QTZ_038No text annotation
HL_6QTZ_039No text annotation
HL_6QTZ_040No text annotation
HL_6QTZ_041No text annotation
HL_6QTZ_042GNRA with one bulged base
HL_6QTZ_043No text annotation
HL_6QTZ_044No text annotation
HL_6QTZ_045No text annotation
HL_6QTZ_046No text annotation
HL_6QTZ_047No text annotation
HL_6QTZ_048No text annotation
HL_6QTZ_049No text annotation
HL_6QTZ_050No text annotation
HL_6QTZ_051No text annotation
HL_6QTZ_052No text annotation
HL_6QTZ_053No text annotation
HL_6QTZ_054No text annotation
HL_6QTZ_055No text annotation
HL_6QTZ_056No text annotation
HL_6QTZ_057No text annotation
HL_6QTZ_058No text annotation
HL_6QTZ_059No text annotation
HL_6QTZ_060No text annotation
HL_6QTZ_061No text annotation
HL_6QTZ_062No text annotation
HL_6QTZ_063No text annotation
HL_6QTZ_064GNRA
HL_6QTZ_069No text annotation
HL_6QTZ_071No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6QTZ_0011/A/7:8,
1/y/150:152		No text annotation
Not in a motif group		homologous
IL_8C3A_002
IL_61258.12
IL_6QTZ_0021/A/12:15,
1/y/144:146		Isolated cWH basepair
Not in a motif group		geometric
IL_3D0M_002
IL_51629.2
IL_6QTZ_0031/A/27:28,
1/A/56:58		No text annotation
Not in a motif group		homologous
IL_8C3A_004
IL_76488.2
IL_6QTZ_0041/A/31:38,
1/A/45:53		tSH-tHW-tHH-tHS
Not in a motif group		homologous
IL_5TBW_005
IL_35728.2
IL_6QTZ_0051/A/82:89,
1/A/97:103		No text annotation
Not in a motif group		homologous
IL_5TBW_006
IL_88613.1
IL_6QTZ_0061/A/123:124,
1/A/144:149		No text annotation
Not in a motif group		homologous
IL_5TBW_007
IL_19724.2
IL_6QTZ_0071/A/125:127,
1/A/141:143		No text annotation
Not in a motif group		homologous
IL_8C3A_008
IL_95997.1
IL_6QTZ_0091/A/169:172,
1/A/247:253		No text annotation
Not in a motif group
IL_6QTZ_0101/A/172:173,
1/A/245:247		Single stack bend
Not in a motif group		geometric
IL_7RQB_058
IL_76488.2
IL_6QTZ_0111/A/177:178,
1/A/238:241		Minor groove platform
Not in a motif group		geometric
IL_4KQY_004
IL_95601.3
IL_6QTZ_0121/A/189:191,
1/A/204:205		No text annotation
Not in a motif group		homologous
IL_8C3A_013
IL_83039.13
IL_6QTZ_0131/A/337:339,
1/y/25:26		No text annotation
Not in a motif group		homologous
IL_8C3A_014
IL_37497.2
IL_6QTZ_0141/A/376:379,
1/A/390:403		No text annotation
Not in a motif group		geometric
IL_5TBW_014
IL_60992.6
IL_6QTZ_0151/A/404:410,
1/y/13:19		Triple sheared with non-canonical cWW
Not in a motif group		homologous
IL_5TBW_015
IL_66414.6
IL_6QTZ_0161/A/429:431,
1/A/628:630		No text annotation
Not in a motif group		homologous
IL_5TBW_016
IL_51629.2
IL_6QTZ_0181/A/512:513,
1/A/577:579		No text annotation
Not in a motif group		homologous
IL_8C3A_020
IL_37497.2
IL_6QTZ_0191/A/517:525,
1/A/567:573		No text annotation
Not in a motif group		homologous
IL_5TBW_019
IL_23992.1
IL_6QTZ_0201/A/531:538,
1/A/553:561		No text annotation
Not in a motif group		homologous
IL_5TBW_020
IL_07703.1
IL_6QTZ_0211/A/668:670,
1/A/792:794		No text annotation
Not in a motif group		homologous
IL_8C3A_023
IL_95997.1
IL_6QTZ_0221/A/680:684,
1/A/696:700		No text annotation
Not in a motif group		homologous
IL_5TBW_022
IL_74284.1
IL_6QTZ_0231/A/725:728,
1/A/741:745		No text annotation
Not in a motif group		homologous
IL_8C3A_025
IL_07235.1
IL_6QTZ_0241/A/752:753,
1/A/779:781		Single bulged A
Not in a motif group		homologous
IL_5TBW_024
IL_37497.2
IL_6QTZ_0251/A/755:756,
1/A/775:777		No text annotation
Not in a motif group		homologous
IL_8C3A_027
IL_83039.13
IL_6QTZ_0271/A/803:805,
1/A/938:940		No text annotation
Not in a motif group		homologous
IL_8C3A_029
IL_95997.1
IL_6QTZ_0281/A/805:809,
1/A/931:938		No text annotation
Not in a motif group		geometric
IL_5TBW_028
IL_17470.6
IL_6QTZ_0341/A/954:956,
1/A/965:967		No text annotation
Not in a motif group		homologous
IL_8C3A_037
IL_95997.1
IL_6QTZ_0351/A/969:970,
1/A/1111:1113		No text annotation
Not in a motif group		homologous
IL_8C3A_038
IL_76488.2
IL_6QTZ_0361/A/977:981,
1/A/1102:1104		No text annotation
Not in a motif group
IL_6QTZ_0371/A/983:985,
1/A/1099:1100		No text annotation
Not in a motif group		homologous
IL_8C3A_040
IL_00225.2
IL_6QTZ_0451/A/1120:1122,
1/A/1136:1138		No text annotation
Not in a motif group		homologous
IL_8C3A_049
IL_95997.1
IL_6QTZ_0461/A/1123:1125,
1/A/1133:1135		No text annotation
Not in a motif group		homologous
IL_8C3A_050
IL_52767.2
IL_6QTZ_0471/A/1167:1171,
1/A/1328:1332		No text annotation
Not in a motif group		homologous
IL_8C3A_051
IL_89002.2
IL_6QTZ_0481/A/1173:1180,
1/A/1325:1326		SSU/LSU pseudoknot
Not in a motif group		homologous
IL_5TBW_049
IL_15861.7
IL_6QTZ_0491/A/1180:1182,
1/A/1324:1325		Single bulged U
Not in a motif group		geometric
IL_7A0S_035
IL_83039.13
IL_6QTZ_0521/A/1207:1209,
1/A/1296:1297		No text annotation
Not in a motif group		homologous
IL_8C3A_056
IL_83039.13
IL_6QTZ_0551/A/1376:1378,
1/A/1428:1431		No text annotation
Not in a motif group		homologous
IL_8C3A_061
IL_52767.2
IL_6QTZ_0571/A/1388:1395,
1/A/1415:1419		No text annotation
Not in a motif group		homologous
IL_8C3A_063
IL_70923.2
IL_6QTZ_0591/A/1444:1450,
1/A/2354:2359		No text annotation
Not in a motif group		homologous
IL_8C3A_065
IL_76042.2
IL_6QTZ_1151/A/3004:3007,
1/A/3139:3144		Double sheared
Not in a motif group		homologous
IL_5TBW_114
IL_09705.9
IL_6QTZ_1161/A/3012:3014,
1/A/3040:3042		No text annotation
Not in a motif group		homologous
IL_8C3A_124
IL_95997.1
IL_6QTZ_1171/A/3018:3025,
1/A/3030:3036		No text annotation
Not in a motif group		homologous
IL_8C3A_125
IL_04346.7
IL_6QTZ_1181/A/3047:3051,
1/A/3091:3094		No text annotation
Not in a motif group		homologous
IL_8C3A_126
IL_37712.2
IL_6QTZ_1191/A/3054:3059,
1/A/3084:3088		No text annotation
Not in a motif group		homologous
IL_8C3A_127
IL_17136.1
IL_6QTZ_1211/A/3103:3107,
1/A/3127:3131		No text annotation
Not in a motif group		homologous
IL_8C3A_129
IL_89002.2
IL_6QTZ_1221/A/3160:3162,
1/A/3289:3290		Single stack bend
Not in a motif group		geometric
IL_4WF9_007
IL_76488.2
IL_6QTZ_1231/A/3162:3166,
1/A/3284:3289		No text annotation
Not in a motif group
IL_6QTZ_1251/A/3177:3179,
1/A/3210:3211		Single bulged A
Not in a motif group		homologous
IL_5TBW_123
IL_37497.2
IL_6QTZ_1261/A/3179:3188,
1/A/3204:3210		No text annotation
Not in a motif group		geometric
IL_5TBW_124
IL_15174.1
IL_6QTZ_1271/A/3300:3303,
1/A/3311:3314		Tandem non-canonical cWW pairs
Not in a motif group		homologous
IL_5TBW_129
IL_30621.2
IL_6QTZ_1281/A/3318:3320,
1/A/3387:3388		No text annotation
Not in a motif group		homologous
IL_8C3A_136
IL_83039.13
IL_6QTZ_1291/A/3324:3325,
1/A/3381:3383		Single bulged U
Not in a motif group		geometric
IL_1ET4_002
IL_83039.13
IL_6QTZ_1311/A/3332:3337,
1/A/3367:3371		No text annotation
Not in a motif group		homologous
IL_8C3A_139
IL_83162.5
IL_6QTZ_1351/x/15:16,
1/x/63:65		Single bulged A
Not in a motif group		homologous
IL_5TBW_372
IL_37497.2
IL_6QTZ_1361/x/21:27,
1/x/53:58		No text annotation
Not in a motif group		homologous
IL_5TBW_373
IL_10207.2
IL_6QTZ_1371/x/28:29,
1/x/49:52		Minor groove platform
Not in a motif group		geometric
IL_5TBW_374
IL_63797.2
IL_6QTZ_1381/x/29:30,
1/x/47:49		Single stack bend
Not in a motif group		homologous
IL_5TBW_375
IL_76488.2
IL_6QTZ_1391/x/32:36,
1/x/41:45		Symmetric double minor groove platform
Not in a motif group		geometric
IL_4V9F_104
IL_58103.6
IL_6QTZ_1401/x/71:80,
1/x/100:107		9x8 Sarcin-Ricin with GA cWW pair; G-bulge
Not in a motif group		geometric
IL_3DIL_003
IL_34470.2
IL_6QTZ_1411/x/84:87,
1/x/94:96		No text annotation
Not in a motif group		homologous
IL_5TBW_378
IL_95997.1
IL_6QTZ_1421/y/64:66,
1/y/93:96		Isolated non-canonical cWW with bulges
Not in a motif group		geometric
IL_5TBW_145
IL_82068.2
IL_6QTZ_1431/y/68:69,
1/y/89:91		Single bulged U
Not in a motif group		geometric
IL_5TBW_146
IL_83039.13

Problematic loops

#loop idProblemSequence
IL_6QTZ_008No text annotation
IL_6QTZ_017No text annotation
IL_6QTZ_026No text annotation
IL_6QTZ_029Single bulged G
IL_6QTZ_030Triple sheared
IL_6QTZ_031No text annotation
IL_6QTZ_032No text annotation
IL_6QTZ_033No text annotation
IL_6QTZ_038No text annotation
IL_6QTZ_039C-loop
IL_6QTZ_040Tandem non-canonical cWW pairs
IL_6QTZ_041No text annotation
IL_6QTZ_042No text annotation
IL_6QTZ_043No text annotation
IL_6QTZ_044Single bulged A
IL_6QTZ_050No text annotation
IL_6QTZ_051No text annotation
IL_6QTZ_053No text annotation
IL_6QTZ_054Major groove platform with extra cWW
IL_6QTZ_056No text annotation
IL_6QTZ_058Single bulged A
IL_6QTZ_060No text annotation
IL_6QTZ_061No text annotation
IL_6QTZ_062No text annotation
IL_6QTZ_063No text annotation
IL_6QTZ_064Major groove outside cWW, minor groove, intercalation pocket
IL_6QTZ_065No text annotation
IL_6QTZ_066Triple sheared
IL_6QTZ_067No text annotation
IL_6QTZ_068No text annotation
IL_6QTZ_069Single stack bend
IL_6QTZ_070No text annotation
IL_6QTZ_071No text annotation
IL_6QTZ_072Kink-turn
IL_6QTZ_073No text annotation
IL_6QTZ_074No text annotation
IL_6QTZ_075Major groove platform; stack outside cWW
IL_6QTZ_076No text annotation
IL_6QTZ_077tSH-tSH-tHH-tHS
IL_6QTZ_078No text annotation
IL_6QTZ_079No text annotation
IL_6QTZ_080No text annotation
IL_6QTZ_081No text annotation
IL_6QTZ_082Major groove outside cWW, minor groove, intercalation pocket
IL_6QTZ_083No text annotation
IL_6QTZ_084Single bulged U
IL_6QTZ_085Major groove platform with extra pair
IL_6QTZ_086No text annotation
IL_6QTZ_087No text annotation
IL_6QTZ_088No text annotation
IL_6QTZ_089No text annotation
IL_6QTZ_090No text annotation
IL_6QTZ_091No text annotation
IL_6QTZ_092Minor groove platform
IL_6QTZ_093No text annotation
IL_6QTZ_094No text annotation
IL_6QTZ_095No text annotation
IL_6QTZ_096No text annotation
IL_6QTZ_097Single stack bend
IL_6QTZ_098Single bulged A
IL_6QTZ_099No text annotation
IL_6QTZ_100Single bulged A
IL_6QTZ_101Tandem non-canonical cWW pairs
IL_6QTZ_102Single stack bend with bulge
IL_6QTZ_103Major groove platform
IL_6QTZ_104No text annotation
IL_6QTZ_105Major groove platform
IL_6QTZ_106No text annotation
IL_6QTZ_107No text annotation
IL_6QTZ_108No text annotation
IL_6QTZ_109No text annotation
IL_6QTZ_110Multiple bulged bases
IL_6QTZ_111No text annotation
IL_6QTZ_112Minor groove platform with intercalation
IL_6QTZ_113No text annotation
IL_6QTZ_114Single bulged A
IL_6QTZ_120No text annotation
IL_6QTZ_124No text annotation
IL_6QTZ_130No text annotation
IL_6QTZ_132No text annotation
IL_6QTZ_133Double sheared
IL_6QTZ_134No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6QTZ_0021/A/369:376,
1/A/403:404,
1/y/19:20		No text annotation
Not in a motif group		homologous
J3_5TBW_002
NA
J3_6QTZ_0031/A/502:503,
1/A/588:597,
1/A/606:611		No text annotation
Not in a motif group		homologous
J3_5TBW_003
NA
J3_6QTZ_0061/A/986:987,
1/A/1062:1066,
1/A/1092:1098		No text annotation
Not in a motif group
J3_6QTZ_0151/A/3298:3300,
1/A/3314:3318,
1/A/3388:3390		No text annotation
Not in a motif group		homologous
J3_5TBW_015
NA
J3_6QTZ_0161/x/9:14,
1/x/66:67,
1/x/111:112		No text annotation
Not in a motif group		homologous
J3_5TBW_045
NA
J3_6QTZ_0171/y/44:45,
1/y/58:64,
1/y/96:100		No text annotation
Not in a motif group

Problematic loops

#loop idProblemSequence
J3_6QTZ_001No text annotation
J3_6QTZ_004No text annotation
J3_6QTZ_005No text annotation
J3_6QTZ_007No text annotation
J3_6QTZ_008No text annotation
J3_6QTZ_009No text annotation
J3_6QTZ_010No text annotation
J3_6QTZ_011No text annotation
J3_6QTZ_012No text annotation
J3_6QTZ_013No text annotation
J3_6QTZ_014No text annotation

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