7AZY Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7AZY_001 | 1/E/38:45 | No text annotation | geometric HL_4V9F_006 HL_30068.2 | |
| HL_7AZY_002 | 1/E/69:74 | No text annotation | homologous HL_8C3A_002 NA | |
| HL_7AZY_003 | 1/E/90:96 | No text annotation | homologous HL_8C3A_003 NA | |
| HL_7AZY_004 | 1/E/132:136 | No text annotation | homologous HL_8C3A_004 NA | |
| HL_7AZY_005 | 1/E/194:201 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_005 NA | |
| HL_7AZY_006 | 1/E/208:212 | No text annotation | homologous HL_8C3A_006 NA | |
| HL_7AZY_007 | 1/E/216:224 | T-loop with unstacked turn | homologous HL_5TBW_007 NA | |
| HL_7AZY_008 | 1/E/278:287 | No text annotation | homologous HL_8C3A_008 NA | |
| HL_7AZY_009 | 1/E/303:312 | Pseudoknot geometry | homologous HL_5TBW_009 NA | |
| HL_7AZY_010 | 1/E/357:362 | GNRA | homologous HL_5TBW_010 NA | |
| HL_7AZY_011 | 1/E/382:387 | GNRA | homologous HL_8C3A_011 NA | |
| HL_7AZY_012 | 1/E/543:548 | No text annotation | ||
| HL_7AZY_013 | 1/E/599:604 | GNRA | homologous HL_5TBW_013 NA | |
| HL_7AZY_014 | 1/E/640:649 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_014 NA | |
| HL_7AZY_015 | 1/E/686:694 | No text annotation | homologous HL_8C3A_015 NA | |
| HL_7AZY_016 | 1/E/707:712 | GNRA | homologous HL_8C3A_016 NA | |
| HL_7AZY_017 | 1/E/732:737 | GNRA | homologous HL_5TBW_017 NA | |
| HL_7AZY_018 | 1/E/763:768 | No text annotation | geometric HL_5TBW_018 NA | |
| HL_7AZY_019 | 1/E/844:849 | GNRA | homologous HL_5TBW_019 NA | |
| HL_7AZY_020 | 1/E/876:885 | No text annotation | homologous HL_5TBW_020 NA | |
| HL_7AZY_021 | 1/E/910:918 | No text annotation | homologous HL_5TBW_021 NA | |
| HL_7AZY_022 | 1/E/958:963 | Externally structured | homologous HL_8C3A_022 NA | |
| HL_7AZY_023 | 1/E/1023:1029 | GNRA | homologous HL_5TBW_023 NA | |
| HL_7AZY_024 | 1/E/1076:1083 | No text annotation | geometric HL_5TBW_024 NA | |
| HL_7AZY_025 | 1/E/1126:1132 | GNRA | homologous HL_8C3A_025 NA | |
| HL_7AZY_026 | 1/E/1148:1155 | No text annotation | homologous HL_5TBW_026 NA | |
| HL_7AZY_027 | 1/E/1239:1250 | No text annotation | ||
| HL_7AZY_028 | 1/E/1266:1275 | No text annotation | ||
| HL_7AZY_029 | 1/E/1347:1357 | Mini UNCG | geometric HL_4OOG_001 HL_56334.1 | |
| HL_7AZY_030 | 1/E/1403:1408 | GNRA | homologous HL_8C3A_030 NA | |
| HL_7AZY_031 | 1/E/1462:1470 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_031 NA | |
| HL_7AZY_032 | 1/E/1506:1512 | Pseudoknot geometry with 3' bulge | homologous HL_8C3A_032 NA | |
| HL_7AZY_033 | 1/E/1544:1549 | GNRA variation | homologous HL_5TBW_033 NA | |
| HL_7AZY_034 | 1/E/1565:1574 | No text annotation | geometric HL_2ZZM_002 HL_13963.3 | |
| HL_7AZY_035 | 1/E/1599:1608 | No text annotation | homologous HL_5TBW_035 NA | |
| HL_7AZY_036 | 1/E/1634:1639 | GNRA | homologous HL_8C3A_036 NA | |
| HL_7AZY_037 | 1/E/1680:1688 | No text annotation | homologous HL_8C3A_037 NA | |
| HL_7AZY_038 | 1/E/1719:1725 | No text annotation | homologous HL_5TBW_038 NA | |
| HL_7AZY_039 | 1/E/1760:1765 | No text annotation | geometric HL_2Y9H_003 HL_75660.5 | |
| HL_7AZY_040 | 1/E/1792:1796 | Mini UNCG | homologous HL_5TBW_040 NA | |
| HL_7AZY_041 | 1/E/1844:1851 | No text annotation | homologous HL_8C3A_041 NA | |
| HL_7AZY_042 | 1/E/1862:1868 | GNRA | homologous HL_5TBW_042 NA | |
| HL_7AZY_043 | 1/E/1923:1928 | UNCG | homologous HL_8C3A_043 NA | |
| HL_7AZY_045 | 1/E/2110:2114 | No text annotation | homologous HL_8C3A_045 NA | |
| HL_7AZY_046 | 1/E/2135:2145 | No text annotation | homologous HL_8C3A_046 NA | |
| HL_7AZY_047 | 1/E/2164:2170 | GNRA | homologous HL_8C3A_047 NA | |
| HL_7AZY_048 | 1/E/2220:2225 | GNRA | homologous HL_5TBW_048 NA | |
| HL_7AZY_049 | 1/E/2253:2263 | No text annotation | homologous HL_8C3A_049 NA | |
| HL_7AZY_050 | 1/E/2292:2300 | No text annotation | homologous HL_8C3A_050 NA | |
| HL_7AZY_051 | 1/E/2369:2378 | No text annotation | homologous HL_8C3A_051 NA | |
| HL_7AZY_052 | 1/E/2535:2544 | No text annotation | ||
| HL_7AZY_053 | 1/E/2568:2573 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_7AZY_054 | 1/E/2616:2624 | No text annotation | homologous HL_8C3A_055 NA | |
| HL_7AZY_055 | 1/E/2633:2645 | No text annotation | homologous HL_5TBW_055 NA | |
| HL_7AZY_056 | 1/E/2673:2681 | No text annotation | homologous HL_8C3A_057 NA | |
| HL_7AZY_057 | 1/E/2693:2700 | Pseudoknot geometry | homologous HL_8C3A_058 NA | |
| HL_7AZY_058 | 1/E/2724:2732 | No text annotation | homologous HL_8C3A_059 NA | |
| HL_7AZY_059 | 1/E/2744:2749 | GNRA | homologous HL_8C3A_060 NA | |
| HL_7AZY_060 | 1/E/2776:2784 | Pseudoknot geometry | homologous HL_8C3A_061 NA | |
| HL_7AZY_061 | 1/E/2840:2848 | No text annotation | homologous HL_5TBW_061 NA | |
| HL_7AZY_062 | 1/E/2897:2904 | No text annotation | homologous HL_5TBW_062 NA | |
| HL_7AZY_063 | 1/E/2920:2926 | No text annotation | geometric HL_5TBW_063 NA | |
| HL_7AZY_064 | 1/E/2963:2968 | GNRA | homologous HL_8C3A_065 NA | |
| HL_7AZY_065 | 1/E/3025:3030 | GNRA | homologous HL_5TBW_065 NA | |
| HL_7AZY_066 | 1/E/3068:3073 | Ribsomal LSU H95 | homologous HL_8C3A_067 NA | |
| HL_7AZY_067 | 1/E/3110:3124 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_7AZY_068 | 1/E/3194:3197 | No text annotation | geometric HL_5TBW_068 NA | |
| HL_7AZY_069 | 1/E/3240:3247 | No text annotation | homologous HL_5TBW_069 NA | |
| HL_7AZY_070 | 1/E/3303:3311 | No text annotation | geometric HL_5TBW_070 NA | |
| HL_7AZY_071 | 1/E/3350:3353 | Mini UNCG | homologous HL_8C3A_072 NA | |
| HL_7AZY_079 | 1/F/32:45 | No text annotation | homologous HL_8C3A_228 NA | |
| HL_7AZY_072 | 1/F/36:41 | No text annotation | geometric HL_5TBW_185 NA | |
| HL_7AZY_073 | 1/F/88:93 | GNRA | homologous HL_5TBW_186 NA | |
| HL_7AZY_074 | 1/G/47:56 | Pseudoknot with intercalation | geometric HL_7A0S_001 HL_93438.2 | |
| HL_7AZY_075 | 1/G/69:89 | No text annotation | homologous HL_8P4V_073 NA | |
| HL_7AZY_076 | 1/G/108:114 | No text annotation | homologous HL_5TBW_075 NA | |
| HL_7AZY_077 | 1/G/124:129 | No text annotation | homologous HL_5TBW_076 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7AZY_078 | No text annotation | ||
| HL_7AZY_044 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7AZY_001 | 1/E/7:8, 1/G/150:152 | Single bulged C | homologous IL_8C3A_002 NA | |
| IL_7AZY_002 | 1/E/13:15, 1/G/144:145 | Single bulged U | homologous IL_8C3A_003 NA | |
| IL_7AZY_003 | 1/E/27:28, 1/E/56:58 | No text annotation | homologous IL_8C3A_004 NA | |
| IL_7AZY_004 | 1/E/31:38, 1/E/45:53 | tSH-tHW-tHH-tHS | homologous IL_5TBW_005 NA | |
| IL_7AZY_005 | 1/E/82:89, 1/E/97:103 | No text annotation | homologous IL_8C3A_006 NA | |
| IL_7AZY_006 | 1/E/123:124, 1/E/144:149 | No text annotation | homologous IL_8C3A_007 NA | |
| IL_7AZY_007 | 1/E/125:127, 1/E/141:143 | Isolated non-canonical cWW pair | homologous IL_8C3A_008 NA | |
| IL_7AZY_008 | 1/E/163:165, 1/E/257:258 | Single stack bend | homologous IL_5TBW_009 NA | |
| IL_7AZY_009 | 1/E/169:170, 1/E/248:253 | No text annotation | homologous IL_5TBW_010 NA | |
| IL_7AZY_010 | 1/E/177:178, 1/E/238:241 | Single stack bend | homologous IL_8C3A_012 NA | |
| IL_7AZY_011 | 1/E/189:191, 1/E/204:205 | Single bulged U | homologous IL_5TBW_012 NA | |
| IL_7AZY_012 | 1/E/337:339, 1/G/25:26 | Single bulged A | homologous IL_5TBW_013 NA | |
| IL_7AZY_013 | 1/E/376:379, 1/E/390:403 | No text annotation | geometric IL_5TBW_014 NA | |
| IL_7AZY_014 | 1/E/404:410, 1/G/13:19 | Triple sheared with non-canonical cWW | homologous IL_5TBW_015 NA | |
| IL_7AZY_015 | 1/E/429:431, 1/E/628:630 | Isolated non-canonical cWW pair | homologous IL_5TBW_016 NA | |
| IL_7AZY_017 | 1/E/512:513, 1/E/577:579 | Single bulged A | homologous IL_8C3A_020 NA | |
| IL_7AZY_018 | 1/E/517:525, 1/E/567:573 | No text annotation | homologous IL_5TBW_019 NA | |
| IL_7AZY_019 | 1/E/531:538, 1/E/553:561 | No text annotation | homologous IL_5TBW_020 NA | |
| IL_7AZY_020 | 1/E/668:670, 1/E/792:794 | Isolated non-canonical cWW pair | homologous IL_8C3A_023 NA | |
| IL_7AZY_021 | 1/E/680:684, 1/E/696:700 | No text annotation | homologous IL_5TBW_022 NA | |
| IL_7AZY_022 | 1/E/725:728, 1/E/741:745 | No text annotation | homologous IL_8C3A_025 NA | |
| IL_7AZY_023 | 1/E/752:753, 1/E/779:781 | Single bulged A | homologous IL_8C3A_026 NA | |
| IL_7AZY_024 | 1/E/755:756, 1/E/775:777 | Single bulged U | homologous IL_5TBW_025 NA | |
| IL_7AZY_025 | 1/E/758:763, 1/E/768:773 | No text annotation | homologous IL_5TBW_026 NA | |
| IL_7AZY_026 | 1/E/803:805, 1/E/938:940 | Isolated non-canonical cWW pair | homologous IL_8C3A_029 NA | |
| IL_7AZY_027 | 1/E/805:809, 1/E/931:938 | tHW-tHW cross-strand stack | geometric IL_5TBW_028 NA | |
| IL_7AZY_028 | 1/E/833:834, 1/E/859:861 | Single bulged G | homologous IL_8C3A_032 NA | |
| IL_7AZY_029 | 1/E/834:838, 1/E/855:859 | Triple sheared | geometric IL_5J7L_263 IL_50730.2 | |
| IL_7AZY_030 | 1/E/869:872, 1/E/888:890 | Major groove platform with extra cWW | homologous IL_5TBW_031 NA | |
| IL_7AZY_031 | 1/E/873:875, 1/E/886:887 | Single bulged U | homologous IL_8C3A_035 NA | |
| IL_7AZY_032 | 1/E/907:909, 1/E/919:923 | Multiple bulged bases | geometric IL_5TBW_033 NA | |
| IL_7AZY_033 | 1/E/954:956, 1/E/965:967 | Isolated non-canonical cWW pair | homologous IL_8C3A_037 NA | |
| IL_7AZY_034 | 1/E/969:970, 1/E/1111:1113 | No text annotation | homologous IL_8C3A_038 NA | |
| IL_7AZY_035 | 1/E/977:982, 1/E/1101:1104 | Kink-turn related | homologous IL_8C3A_039 NA | |
| IL_7AZY_036 | 1/E/983:985, 1/E/1099:1100 | Single bulged G | homologous IL_5TBW_037 NA | |
| IL_7AZY_037 | 1/E/991:997, 1/E/1052:1058 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_5TBW_038 NA | |
| IL_7AZY_038 | 1/E/997:998, 1/E/1050:1052 | Minor groove platform | homologous IL_8C3A_042 NA | |
| IL_7AZY_039 | 1/E/999:1004, 1/E/1046:1049 | C-loop | homologous IL_5TBW_040 NA | |
| IL_7AZY_040 | 1/E/1006:1009, 1/E/1041:1044 | Tandem non-canonical cWW pairs | homologous IL_5TBW_041 NA | |
| IL_7AZY_041 | 1/E/1009:1011, 1/E/1039:1041 | Isolated non-canonical cWW pair | geometric IL_5J7L_061 IL_87907.2 | |
| IL_7AZY_042 | 1/E/1013:1018, 1/E/1034:1037 | Other IL | homologous IL_5TBW_043 NA | |
| IL_7AZY_043 | 1/E/1069:1071, 1/E/1087:1089 | Isolated non-canonical cWW pair | homologous IL_8C3A_047 NA | |
| IL_7AZY_044 | 1/E/1074:1076, 1/E/1083:1084 | Single bulged G | homologous IL_8C3A_048 NA | |
| IL_7AZY_045 | 1/E/1120:1122, 1/E/1136:1138 | Isolated non-canonical cWW pair | homologous IL_5TBW_046 NA | |
| IL_7AZY_046 | 1/E/1167:1171, 1/E/1328:1332 | UAA/GAN | homologous IL_8C3A_051 NA | |
| IL_7AZY_047 | 1/E/1173:1180, 1/E/1325:1326 | SSU/LSU pseudoknot | homologous IL_5TBW_049 NA | |
| IL_7AZY_048 | 1/E/1180:1182, 1/E/1324:1325 | Single bulged U | geometric IL_5TBW_050 NA | |
| IL_7AZY_049 | 1/E/1187:1194, 1/E/1314:1319 | No text annotation | geometric IL_5TBW_051 NA | |
| IL_7AZY_050 | 1/E/1194:1205, 1/E/1299:1314 | No text annotation | geometric IL_5TBW_052 NA | |
| IL_7AZY_051 | 1/E/1207:1209, 1/E/1296:1297 | Single bulged U | homologous IL_8C3A_056 NA | |
| IL_7AZY_052 | 1/E/1218:1226, 1/E/1283:1287 | Kink-turn | homologous IL_8C3A_057 NA | |
| IL_7AZY_053 | 1/E/1233:1239, 1/E/1250:1255 | No text annotation | ||
| IL_7AZY_054 | 1/E/1262:1266, 1/E/1275:1277 | Major groove platform with extra cWW | homologous IL_5TBW_056 NA | |
| IL_7AZY_055 | 1/E/1376:1378, 1/E/1428:1431 | No text annotation | homologous IL_8C3A_061 NA | |
| IL_7AZY_056 | 1/E/1385:1387, 1/E/1420:1421 | Single bulged A | homologous IL_8C3A_062 NA | |
| IL_7AZY_057 | 1/E/1388:1395, 1/E/1415:1419 | Kink-turn | homologous IL_5TBW_059 NA | |
| IL_7AZY_058 | 1/E/1398:1400, 1/E/1411:1412 | Single bulged A | homologous IL_5TBW_060 NA | |
| IL_7AZY_059 | 1/E/1444:1450, 1/E/2354:2359 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5TBW_061 NA | |
| IL_7AZY_060 | 1/E/1501:1505, 1/E/1513:1515 | Major groove minor groove platform with tHH | geometric IL_4WF9_050 IL_83150.2 | |
| IL_7AZY_061 | 1/E/1532:1536, 1/E/1585:1590 | UAA/GAN | homologous IL_8C3A_067 NA | |
| IL_7AZY_062 | 1/E/1561:1563, 1/E/1577:1578 | Single stack bend | geometric IL_4LFB_041 IL_90729.1 | |
| IL_7AZY_147 | 1/E/1564:1565, 1/E/1574:1576 | Minor groove platform | geometric IL_1U6B_007 IL_51454.2 | |
| IL_7AZY_064 | 1/E/1618:1621, 1/E/1824:1826 | No text annotation | homologous IL_8C3A_070 NA | |
| IL_7AZY_065 | 1/E/1623:1624, 1/E/1819:1822 | Multiple bulged bases | geometric IL_4V9F_021 IL_82107.4 | |
| IL_7AZY_066 | 1/E/1624:1631, 1/E/1811:1819 | No text annotation | ||
| IL_7AZY_067 | 1/E/1645:1649, 1/E/1806:1810 | Triple sheared | geometric IL_5TBW_067 NA | |
| IL_7AZY_068 | 1/E/1661:1663, 1/E/1786:1788 | Isolated non-canonical cWW pair | homologous IL_8C3A_074 NA | |
| IL_7AZY_069 | 1/E/1669:1670, 1/E/1778:1780 | Single bulged C | geometric IL_5TBW_069 NA | |
| IL_7AZY_070 | 1/E/1670:1671, 1/E/1776:1778 | Single stack bend | homologous IL_5TBW_070 NA | |
| IL_7AZY_071 | 1/E/1694:1698, 1/E/1747:1752 | No text annotation | homologous IL_8C3A_077 NA | |
| IL_7AZY_072 | 1/E/1702:1707, 1/E/1737:1743 | No text annotation | homologous IL_5TBW_072 NA | |
| IL_7AZY_073 | 1/E/1711:1717, 1/E/1727:1733 | Kink-turn | homologous IL_5TBW_073 NA | |
| IL_7AZY_074 | 1/E/1883:1889, 1/E/2346:2349 | No text annotation | homologous IL_8C3A_080 NA | |
| IL_7AZY_075 | 1/E/1895:1897, 1/E/2338:2340 | No text annotation | homologous IL_8C3A_081 NA | |
| IL_7AZY_076 | 1/E/1898:1901, 1/E/2336:2337 | Major groove platform; stack outside cWW | geometric IL_5TBW_076 NA | |
| IL_7AZY_148 | 1/E/1898:1906, 1/E/2333:2337 | No text annotation | homologous IL_8C3A_484 NA | |
| IL_7AZY_077 | 1/E/1901:1906, 1/E/2333:2336 | No text annotation | homologous IL_8C3A_083 NA | |
| IL_7AZY_078 | 1/E/1918:1923, 1/E/1928:1934 | tSH-tSH-tHH-tHS | geometric IL_4V9F_063 IL_47346.2 | |
| IL_7AZY_079 | 1/E/1940:1942, 1/E/2106:2108 | Isolated non-canonical cWW pair | homologous IL_8C3A_085 NA | |
| IL_7AZY_080 | 1/E/1947:1948, 1/E/2098:2101 | No text annotation | homologous IL_8C3A_086 NA | |
| IL_7AZY_081 | 1/E/2128:2129, 1/E/2323:2325 | Single bulged A | homologous IL_5TBW_082 NA | |
| IL_7AZY_082 | 1/E/2156:2161, 1/E/2173:2180 | Kink-turn related | homologous IL_5TBW_083 NA | |
| IL_7AZY_083 | 1/E/2196:2199, 1/E/2245:2246 | Major groove intercalation | homologous IL_5TBW_084 NA | |
| IL_7AZY_084 | 1/E/2200:2201, 1/E/2241:2244 | Multiple bulged bases | homologous IL_8C3A_090 NA | |
| IL_7AZY_085 | 1/E/2204:2206, 1/E/2237:2238 | Single bulged U | homologous IL_5TBW_086 NA | |
| IL_7AZY_086 | 1/E/2206:2210, 1/E/2235:2237 | Major groove platform with extra pair | geometric IL_5TBW_087 NA | |
| IL_7AZY_087 | 1/E/2211:2217, 1/E/2228:2234 | No text annotation | homologous IL_8C3A_093 NA | |
| IL_7AZY_088 | 1/E/2276:2277, 1/E/2307:2310 | No text annotation | homologous IL_8C3A_094 NA | |
| IL_7AZY_089 | 1/E/2277:2288, 1/E/2304:2307 | No text annotation | geometric IL_5TBW_090 NA | |
| IL_7AZY_090 | 1/E/2391:2394, 1/E/2986:2988 | Major groove platform with extra pair | homologous IL_5TBW_091 NA | |
| IL_7AZY_091 | 1/E/2396:2398, 1/E/2981:2984 | Major groove platform with intercalation | homologous IL_5TBW_092 NA | |
| IL_7AZY_092 | 1/E/2409:2411, 1/E/2811:2812 | Single bulged U | homologous IL_5TBW_093 NA | |
| IL_7AZY_093 | 1/E/2412:2413, 1/E/2807:2810 | Minor groove platform | homologous IL_5TBW_094 NA | |
| IL_7AZY_094 | 1/E/2423:2425, 1/E/2604:2607 | No text annotation | homologous IL_8C3A_100 NA | |
| IL_7AZY_095 | 1/E/2444:2446, 1/E/2500:2503 | No text annotation | ||
| IL_7AZY_096 | 1/E/2520:2526, 1/E/2584:2587 | No text annotation | homologous IL_8C3A_106 NA | |
| IL_7AZY_097 | 1/E/2614:2615, 1/E/2625:2627 | Single bulged A | homologous IL_5TBW_098 NA | |
| IL_7AZY_098 | 1/E/2666:2668, 1/E/2686:2690 | Isolated tHS basepair with bulges | homologous IL_5TBW_099 NA | |
| IL_7AZY_099 | 1/E/2718:2721, 1/E/2735:2738 | Tandem non-canonical cWW pairs | homologous IL_5TBW_100 NA | |
| IL_7AZY_100 | 1/E/2770:2773, 1/E/2787:2788 | Single stack bend with bulge | homologous IL_8C3A_110 NA | |
| IL_7AZY_101 | 1/E/2823:2824, 1/E/2865:2867 | Major groove platform | homologous IL_5TBW_102 NA | |
| IL_7AZY_149 | 1/E/2823:2826, 1/E/2863:2867 | No text annotation | homologous IL_8C3A_111 NA | |
| IL_7AZY_102 | 1/E/2824:2826, 1/E/2863:2865 | Isolated non-canonical cWW pair | geometric IL_5TBW_103 NA | |
| IL_7AZY_103 | 1/E/2826:2828, 1/E/2862:2863 | Major groove platform | geometric IL_5TBW_104 NA | |
| IL_7AZY_104 | 1/E/2828:2830, 1/E/2858:2862 | Major groove minor groove platform with extra cWW | homologous IL_5TBW_105 NA | |
| IL_7AZY_105 | 1/E/2835:2839, 1/E/2849:2853 | No text annotation | homologous IL_8C3A_114 NA | |
| IL_7AZY_106 | 1/E/2876:2877, 1/E/2949:2951 | Major groove platform | homologous IL_8C3A_115 NA | |
| IL_7AZY_107 | 1/E/2879:2881, 1/E/2943:2947 | Isolated non-canonical cWW with bulges | geometric IL_5TBW_108 NA | |
| IL_7AZY_108 | 1/E/2881:2882, 1/E/2940:2943 | No text annotation | homologous IL_8C3A_117 NA | |
| IL_7AZY_109 | 1/E/2889:2891, 1/E/2912:2914 | Isolated non-canonical cWW pair | geometric IL_5TBW_110 NA | |
| IL_7AZY_150 | 1/E/2889:2892, 1/E/2909:2914 | No text annotation | homologous IL_8C3A_486 NA | |
| IL_7AZY_110 | 1/E/2891:2892, 1/E/2909:2912 | Major groove platform with intercalation | homologous IL_5TBW_111 NA | |
| IL_7AZY_111 | 1/E/2918:2920, 1/E/2926:2928 | Isolated non-canonical cWW pair | homologous IL_8C3A_120 NA | |
| IL_7AZY_112 | 1/E/2960:2961, 1/E/2970:2972 | Single bulged A | geometric IL_7RQB_101 NA | |
| IL_7AZY_113 | 1/E/3004:3007, 1/E/3139:3144 | Double sheared | homologous IL_8C3A_123 NA | |
| IL_7AZY_114 | 1/E/3012:3014, 1/E/3040:3042 | Isolated non-canonical cWW pair | homologous IL_5TBW_115 NA | |
| IL_7AZY_115 | 1/E/3018:3025, 1/E/3030:3036 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8C3A_125 NA | |
| IL_7AZY_116 | 1/E/3046:3051, 1/E/3091:3095 | No text annotation | ||
| IL_7AZY_117 | 1/E/3054:3059, 1/E/3084:3088 | UAA/GAN related | homologous IL_8C3A_127 NA | |
| IL_7AZY_118 | 1/E/3063:3064, 1/E/3077:3080 | No text annotation | homologous IL_8C3A_128 NA | |
| IL_7AZY_119 | 1/E/3103:3107, 1/E/3127:3131 | UAA/GAN | homologous IL_8C3A_129 NA | |
| IL_7AZY_120 | 1/E/3164:3166, 1/E/3284:3286 | Isolated non-canonical cWW pair | homologous IL_8C3A_130 NA | |
| IL_7AZY_121 | 1/E/3168:3170, 1/E/3280:3282 | Isolated non-canonical cWW pair | homologous IL_5TBW_122 NA | |
| IL_7AZY_122 | 1/E/3177:3179, 1/E/3210:3211 | Single bulged A | geometric IL_5TBW_123 NA | |
| IL_7AZY_123 | 1/E/3179:3188, 1/E/3204:3210 | No text annotation | homologous IL_5TBW_124 NA | |
| IL_7AZY_124 | 1/E/3193:3194, 1/E/3197:3199 | Single bulged U | homologous IL_5TBW_125 NA | |
| IL_7AZY_125 | 1/E/3225:3229, 1/E/3258:3260 | No text annotation | homologous IL_8C3A_133 NA | |
| IL_7AZY_126 | 1/E/3233:3235, 1/E/3252:3254 | Isolated non-canonical cWW pair | geometric IL_4M4O_002 IL_87907.2 | |
| IL_7AZY_127 | 1/E/3235:3238, 1/E/3249:3252 | Tandem non-canonical cWW pairs | homologous IL_5TBW_128 NA | |
| IL_7AZY_128 | 1/E/3300:3303, 1/E/3311:3314 | Tandem non-canonical cWW pairs | geometric IL_5TBW_129 NA | |
| IL_7AZY_129 | 1/E/3318:3320, 1/E/3387:3388 | Single bulged U | geometric IL_5J7L_298 IL_89505.4 | |
| IL_7AZY_130 | 1/E/3324:3325, 1/E/3381:3383 | Single bulged U | homologous IL_8C3A_137 NA | |
| IL_7AZY_131 | 1/E/3328:3330, 1/E/3373:3378 | Isolated non-canonical cWW pair | homologous IL_5TBW_132 NA | |
| IL_7AZY_132 | 1/E/3332:3337, 1/E/3367:3371 | No text annotation | homologous IL_5TBW_133 NA | |
| IL_7AZY_133 | 1/E/3340:3342, 1/E/3363:3364 | Single bulged U | geometric IL_5TBW_134 NA | |
| IL_7AZY_134 | 1/E/3342:3345, 1/E/3360:3363 | Double sheared; A in syn | homologous IL_8C3A_141 NA | |
| IL_7AZY_135 | 1/E/3349:3350, 1/E/3353:3356 | Multiple bulged bases | homologous IL_8C3A_142 NA | |
| IL_7AZY_136 | 1/F/15:16, 1/F/63:65 | Single bulged A | homologous IL_5TBW_372 NA | |
| IL_7AZY_137 | 1/F/21:27, 1/F/53:58 | Minor groove platform related | homologous IL_5TBW_373 NA | |
| IL_7AZY_138 | 1/F/28:29, 1/F/49:52 | Minor groove platform | homologous IL_5TBW_374 NA | |
| IL_7AZY_139 | 1/F/29:30, 1/F/47:49 | Single stack bend | geometric IL_5TBW_375 NA | |
| IL_7AZY_140 | 1/F/32:36, 1/F/41:45 | Symmetric double minor groove platform | homologous IL_5TBW_376 NA | |
| IL_7AZY_141 | 1/F/72:80, 1/F/100:106 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_377 NA | |
| IL_7AZY_142 | 1/F/84:87, 1/F/94:96 | Isolated non-canonical cWW pair | homologous IL_5TBW_378 NA | |
| IL_7AZY_143 | 1/G/64:66, 1/G/93:96 | Isolated non-canonical cWW pair | geometric IL_5TBW_145 NA | |
| IL_7AZY_144 | 1/G/68:69, 1/G/89:91 | Single bulged U | homologous IL_5TBW_146 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7AZY_016 | Kink-turn related | ||
| IL_7AZY_145 | No text annotation | ||
| IL_7AZY_146 | No text annotation | ||
| IL_7AZY_063 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7AZY_001 | 1/E/113:123, 1/E/149:158, 1/E/263:267 | No text annotation | homologous J3_8C3A_001 NA | |
| J3_7AZY_019 | 1/E/113:124, 1/E/144:158, 1/E/263:267 | No text annotation | ||
| J3_7AZY_020 | 1/E/185:189, 1/E/205:214, 1/E/226:231 | No text annotation | homologous J3_8P9A_044 J3_75408.1 | |
| J3_7AZY_021 | 1/E/340:356, 1/E/363:368, 1/G/21:24 | No text annotation | homologous J3_8P9A_045 J3_30040.2 | |
| J3_7AZY_002 | 1/E/369:376, 1/E/403:404, 1/G/19:20 | No text annotation | homologous J3_5TBW_002 NA | |
| J3_7AZY_022 | 1/E/369:379, 1/E/390:404, 1/G/19:20 | No text annotation | homologous J3_8C3A_049 NA | |
| J3_7AZY_003 | 1/E/502:503, 1/E/588:597, 1/E/606:611 | No text annotation | homologous J3_5TBW_003 NA | |
| J3_7AZY_004 | 1/E/814:820, 1/E/905:907, 1/E/923:926 | No text annotation | homologous J3_8C3A_003 NA | |
| J3_7AZY_005 | 1/E/828:831, 1/E/863:867, 1/E/892:897 | No text annotation | homologous J3_5TBW_005 NA | |
| J3_7AZY_006 | 1/E/986:987, 1/E/1062:1066, 1/E/1092:1098 | No text annotation | homologous J3_5TBW_006 NA | |
| J3_7AZY_007 | 1/E/1230:1232, 1/E/1256:1262, 1/E/1277:1279 | No text annotation | homologous J3_8C3A_005 NA | |
| J3_7AZY_008 | 1/E/1479:1485, 1/E/1857:1859, 1/E/1871:1874 | No text annotation | homologous J3_5TBW_008 NA | |
| J3_7AZY_009 | 1/E/1488:1491, 1/E/1837:1843, 1/E/1852:1854 | No text annotation | homologous J3_5TBW_009 NA | |
| J3_7AZY_010 | 1/E/1526:1531, 1/E/1591:1595, 1/E/1612:1613 | No text annotation | homologous J3_5TBW_010 NA | |
| J3_7AZY_024 | 1/E/1537:1542, 1/E/1551:1560, 1/E/1579:1584 | No text annotation | ||
| J3_7AZY_011 | 1/E/1631:1632, 1/E/1641:1645, 1/E/1810:1811 | No text annotation | homologous J3_8C3A_054 NA | |
| J3_7AZY_025 | 1/E/1654:1658, 1/E/1791:1792, 1/E/1796:1801 | No text annotation | homologous J3_8P9A_058 J3_12393.2 | |
| J3_7AZY_012 | 1/E/2432:2435, 1/E/2512:2517, 1/E/2590:2597 | No text annotation | homologous J3_5TBW_012 NA | |
| J3_7AZY_013 | 1/E/2529:2532, 1/E/2547:2563, 1/E/2578:2581 | No text annotation | homologous J3_8C3A_009 NA | |
| J3_7AZY_026 | 1/E/2651:2653, 1/E/2754:2765, 1/E/2793:2798 | No text annotation | homologous J3_8C3A_056 NA | |
| J3_7AZY_014 | 1/E/2664:2666, 1/E/2690:2692, 1/E/2701:2706 | No text annotation | homologous J3_8C3A_010 NA | |
| J3_7AZY_015 | 1/E/2886:2889, 1/E/2914:2916, 1/E/2930:2936 | No text annotation | homologous J3_8C3A_011 NA | |
| J3_7AZY_027 | 1/E/3171:3176, 1/E/3212:3220, 1/E/3265:3279 | No text annotation | homologous J3_8P9A_064 J3_03190.1 | |
| J3_7AZY_016 | 1/E/3298:3300, 1/E/3314:3318, 1/E/3388:3390 | No text annotation | homologous J3_5TBW_015 NA | |
| J3_7AZY_017 | 1/F/9:14, 1/F/66:67, 1/F/111:112 | No text annotation | homologous J3_5TBW_045 NA | |
| J3_7AZY_018 | 1/G/44:45, 1/G/58:64, 1/G/96:100 | No text annotation | homologous J3_8P9A_067 J3_35667.2 | |
| J4_7AZY_001 | 1/E/112:113, 1/E/267:272, 1/E/293:299, 1/E/316:319 | No text annotation | homologous J4_8P9A_012 J4_45801.6 | |
| J4_7AZY_002 | 1/E/185:189, 1/E/205:208, 1/E/212:214, 1/E/226:231 | No text annotation | homologous J4_8P9A_013 J4_12410.1 | |
| J4_7AZY_003 | 1/E/1451:1457, 1/E/1475:1476, 1/E/1877:1880, 1/E/2352:2353 | No text annotation | homologous J4_8P9A_014 J4_87855.1 | |
| J4_7AZY_004 | 1/E/1492:1496, 1/E/1520:1525, 1/E/1614:1615, 1/E/1829:1836 | No text annotation | homologous J4_8P9A_015 J4_69051.6 | |
| J4_7AZY_005 | 1/E/1674:1675, 1/E/1693:1694, 1/E/1752:1753, 1/E/1772:1773 | No text annotation | homologous J4_8P9A_016 J4_24280.2 | |
| J4_7AZY_006 | 1/E/2130:2134, 1/E/2146:2150, 1/E/2186:2190, 1/E/2317:2322 | No text annotation | homologous J4_8P9A_017 J4_07509.2 | |
| J4_7AZY_007 | 1/E/2192:2194, 1/E/2248:2249, 1/E/2267:2276, 1/E/2310:2315 | No text annotation | homologous J4_8C3A_007 NA | |
| J4_7AZY_008 | 1/E/2654:2658, 1/E/2712:2716, 1/E/2740:2742, 1/E/2751:2753 | No text annotation | homologous J4_8C3A_008 NA | |
| J4_7AZY_009 | 1/E/3010:3012, 1/E/3042:3043, 1/E/3098:3100, 1/E/3134:3136 | No text annotation | homologous J4_8P9A_020 J4_65356.1 | |
| J5_7AZY_001 | 1/E/20:22, 1/G/35:42, 1/G/102:107, 1/G/115:116, 1/G/137:139 | No text annotation | homologous J5_8P9A_010 J5_01737.2 | |
| J5_7AZY_002 | 1/E/658:663, 1/E/799:802, 1/E/941:944, 1/E/1375:1376, 1/E/1431:1437 | No text annotation | homologous J5_8P9A_011 J5_63811.1 | |
| J5_7AZY_003 | 1/E/675:678, 1/E/702:706, 1/E/713:721, 1/E/749:751, 1/E/782:787 | No text annotation | homologous J5_8P9A_012 J5_23272.1 | |
| J5_7AZY_004 | 1/E/1906:1914, 1/E/1938:1939, 1/E/2109:2110, 1/E/2114:2122, 1/E/2331:2333 | No text annotation | homologous J5_8P9A_013 J5_62523.6 | |
| J5_7AZY_005 | 1/E/2399:2406, 1/E/2815:2823, 1/E/2867:2876, 1/E/2951:2957, 1/E/2975:2980 | No text annotation | ||
| J5_7AZY_006 | 1/E/2416:2419, 1/E/2611:2614, 1/E/2627:2628, 1/E/2650:2651, 1/E/2798:2804 | No text annotation | homologous J5_8P9A_015 J5_08912.1 | |
| J6_7AZY_001 | 1/E/22:27, 1/E/58:68, 1/E/75:79, 1/E/106:110, 1/E/321:331, 1/G/32:35 | No text annotation | ||
| J6_7AZY_002 | 1/E/2416:2419, 1/E/2611:2614, 1/E/2627:2628, 1/E/2650:2653, 1/E/2754:2765, 1/E/2793:2804 | No text annotation | ||
| J7_7AZY_001 | 1/E/949:954, 1/E/967:968, 1/E/1114:1117, 1/E/1141:1146, 1/E/1157:1161, 1/E/1338:1339, 1/E/1365:1370 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_7AZY_023 | No text annotation |
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