7AZY Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
# | loop id | location | annotation (mapped to, source) | motif group (similar to) |
---|---|---|---|---|
1/E/38:45 | geometric HL_4V9F_006 | NA HL_23481.5* | ||
1/E/69:74 | homologous HL_5TBW_002 | NA HL_96776.3* | ||
1/E/90:96 | homologous HL_5TBW_003 | NA HL_67216.5* | ||
1/E/132:136 | homologous HL_5TBW_004 | NA HL_36982.3* | ||
1/E/194:201 | T-loop with 1 bulged base homologous HL_5TBW_005 | NA HL_68493.6* | ||
1/E/208:212 | homologous HL_5TBW_006 | NA HL_98557.5* | ||
1/E/216:224 | homologous HL_5TBW_007 | NA HL_08002.6* | ||
1/E/278:287 | homologous HL_5TBW_008 | NA HL_54035.7* | ||
1/E/303:312 | homologous HL_5TBW_009 | NA HL_46142.8* | ||
1/E/357:362 | Other HL homologous HL_5TBW_010 | NA HL_43074.18* | ||
1/E/382:387 | GNRA homologous HL_5TBW_011 | NA HL_43074.18* | ||
1/E/543:548 | NA | NA | ||
1/E/599:604 | GNRA homologous HL_5TBW_013 | NA HL_43074.18* | ||
1/E/640:649 | T-loop with 2 stacked bulged bases homologous HL_5TBW_014 | NA HL_33239.17* | ||
1/E/686:694 | homologous HL_5TBW_015 | NA HL_80105.3* | ||
1/E/707:712 | GNRA homologous HL_5TBW_016 | NA HL_43074.18* | ||
1/E/732:737 | GNRA homologous HL_5TBW_017 | NA HL_43074.18* | ||
1/E/763:768 | geometric HL_5TBW_018 | NA HL_00996.1* | ||
1/E/844:849 | GNRA homologous HL_5TBW_019 | NA HL_43074.18* | ||
1/E/876:885 | homologous HL_5TBW_020 | NA HL_39334.5* | ||
1/E/910:918 | homologous HL_5TBW_021 | NA HL_05832.1* | ||
1/E/958:963 | homologous HL_5TBW_022 | NA HL_15942.5* | ||
1/E/1023:1029 | GNRA homologous HL_5TBW_023 | NA HL_43074.18* | ||
1/E/1076:1083 | geometric HL_5TBW_024 | NA HL_54035.7* | ||
1/E/1126:1132 | GNRA homologous HL_5TBW_025 | NA HL_43074.18* | ||
1/E/1148:1155 | homologous HL_5TBW_026 | NA HL_72451.5* | ||
1/E/1239:1250 | NA | NA | ||
1/E/1266:1275 | NA | NA | ||
1/E/1347:1357 | geometric HL_4OOG_001 | NA HL_68529.2* | ||
1/E/1403:1408 | GNRA homologous HL_5TBW_030 | NA HL_43074.18* | ||
1/E/1462:1470 | T-loop with 2 stacked bulged bases homologous HL_5TBW_031 | NA HL_33239.17* | ||
1/E/1506:1512 | homologous HL_5TBW_032 | NA HL_86880.5* | ||
1/E/1544:1549 | Other HL homologous HL_5TBW_033 | NA HL_43074.18* | ||
1/E/1565:1574 | NA | NA | ||
1/E/1599:1608 | homologous HL_5TBW_035 | NA HL_78457.4* | ||
1/E/1634:1639 | GNRA homologous HL_5TBW_036 | NA HL_43074.18* | ||
1/E/1680:1688 | homologous HL_5TBW_037 | NA HL_73793.2* | ||
1/E/1719:1725 | homologous HL_5TBW_038 | NA HL_00923.1* | ||
1/E/1760:1765 | geometric HL_2Y9H_003 | NA HL_98557.5* | ||
1/E/1792:1796 | homologous HL_5TBW_040 | NA HL_69353.7* | ||
1/E/1844:1851 | homologous HL_5TBW_041 | NA HL_66171.3* | ||
1/E/1862:1868 | GNRA with one bulged base homologous HL_5TBW_042 | NA HL_02361.6* | ||
1/E/1923:1928 | UNCG homologous HL_5TBW_043 | NA HL_79299.11* | ||
1/E/2110:2114 | homologous HL_5TBW_045 | NA HL_99223.1* | ||
1/E/2135:2145 | homologous HL_5TBW_046 | NA HL_43613.4* | ||
1/E/2164:2170 | GNRA homologous HL_5TBW_047 | NA HL_43074.18* | ||
1/E/2220:2225 | Other HL homologous HL_5TBW_048 | NA HL_43074.18* | ||
1/E/2253:2263 | homologous HL_5TBW_049 | NA HL_98248.1* | ||
1/E/2292:2300 | homologous HL_5TBW_050 | NA HL_53760.4* | ||
1/E/2369:2378 | homologous HL_5TBW_051 | NA HL_90642.5* | ||
1/E/2535:2544 | NA | NA | ||
1/E/2568:2573 | NA | NA | ||
1/E/2616:2624 | homologous HL_5TBW_054 | NA HL_46891.3* | ||
1/E/2633:2645 | homologous HL_5TBW_055 | NA HL_19870.5* | ||
1/E/2673:2681 | homologous HL_5TBW_056 | NA HL_76406.3* | ||
1/E/2693:2700 | homologous HL_5TBW_057 | NA HL_46142.8* | ||
1/E/2724:2732 | homologous HL_5TBW_058 | NA HL_14725.1* | ||
1/E/2744:2749 | GNRA homologous HL_5TBW_059 | NA HL_43074.18* | ||
1/E/2776:2784 | homologous HL_5TBW_060 | NA HL_46142.8* | ||
1/E/2840:2848 | homologous HL_5TBW_061 | NA HL_36421.5* | ||
1/E/2897:2904 | homologous HL_5TBW_062 | NA HL_92681.5* | ||
1/E/2920:2926 | geometric HL_5TBW_063 | NA HL_26055.6* | ||
1/E/2963:2968 | GNRA homologous HL_5TBW_064 | NA HL_43074.18* | ||
1/E/3025:3030 | GNRA homologous HL_5TBW_065 | NA HL_43074.18* | ||
1/E/3068:3073 | Ribsomal LSU H95 homologous HL_5TBW_066 | NA HL_67719.1* | ||
1/E/3110:3124 | homologous HL_5TBW_067 | NA HL_56677.5* | ||
1/E/3194:3197 | geometric HL_5TBW_068 | NA HL_46546.1* | ||
1/E/3240:3247 | homologous HL_5TBW_069 | NA HL_27757.1* | ||
1/E/3303:3311 | geometric HL_5TBW_070 | NA HL_05018.6* | ||
1/E/3350:3353 | geometric HL_6JOO_002 | NA HL_69353.7* | ||
1/F/36:41 | NA | NA | ||
1/F/88:93 | NA | NA | ||
1/G/47:56 | geometric HL_7A0S_001 | NA HL_29414.1* | ||
1/G/69:89 | NA | NA | ||
1/G/108:114 | homologous HL_5TBW_075 | NA HL_06569.2* | ||
1/G/124:129 | homologous HL_5TBW_076 | NA HL_60357.1* |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
HL_7AZY_044 | geometric HL_7RQB_011 |
Valid loops
# | loop id | location | annotation (mapped to, source) | motif group (similar to) |
---|---|---|---|---|
1/E/7:8, 1/G/150:152 | Single bulged C homologous IL_5TBW_002 | NA IL_61258.10* | ||
1/E/13:15, 1/G/144:145 | Single bulged U homologous IL_5TBW_003 | NA IL_83039.11* | ||
1/E/27:28, 1/E/56:58 | Single stack bend homologous IL_5TBW_004 | NA IL_04038.4* | ||
1/E/31:38, 1/E/45:53 | tSH-tHW-tHH-tHS homologous IL_5TBW_005 | NA IL_22863.1* | ||
1/E/82:89, 1/E/97:103 | homologous IL_5TBW_006 | NA IL_29509.1* | ||
1/E/123:124, 1/E/144:149 | geometric IL_5TBW_007 | NA IL_19724.1* | ||
1/E/125:127, 1/E/141:143 | homologous IL_5TBW_008 | NA IL_01312.13* | ||
1/E/163:165, 1/E/257:258 | Single stack bend homologous IL_5TBW_009 | NA IL_04038.4* | ||
1/E/169:170, 1/E/248:253 | homologous IL_5TBW_010 | NA IL_76195.1* | ||
1/E/177:178, 1/E/238:241 | Minor groove platform geometric IL_4KQY_004 | NA IL_95601.1* | ||
1/E/189:191, 1/E/204:205 | Single bulged U homologous IL_5TBW_012 | NA IL_83039.11* | ||
1/E/337:339, 1/G/25:26 | Single bulged A homologous IL_5TBW_013 | NA IL_80007.16* | ||
1/E/376:379, 1/E/390:403 | homologous IL_5TBW_014 | NA IL_60992.5* | ||
1/E/404:410, 1/G/13:19 | Triple sheared with non-canonical cWW homologous IL_5TBW_015 | NA IL_66414.5* | ||
1/E/429:431, 1/E/628:630 | homologous IL_5TBW_016 | NA IL_01312.13* | ||
1/E/512:513, 1/E/577:579 | Single bulged A homologous IL_5TBW_018 | NA IL_40508.4* | ||
1/E/517:525, 1/E/567:573 | homologous IL_5TBW_019 | NA IL_41593.1* | ||
1/E/531:538, 1/E/553:561 | homologous IL_5TBW_020 | NA IL_94501.1* | ||
1/E/668:670, 1/E/792:794 | homologous IL_5TBW_021 | NA IL_01312.13* | ||
1/E/680:684, 1/E/696:700 | homologous IL_5TBW_022 | NA IL_92343.1* | ||
1/E/725:728, 1/E/741:745 | UAA/GAN homologous IL_5TBW_023 | NA IL_53523.5* | ||
1/E/752:753, 1/E/779:781 | Single bulged A homologous IL_5TBW_024 | NA IL_80007.16* | ||
1/E/755:756, 1/E/775:777 | Single bulged U homologous IL_5TBW_025 | NA IL_83039.11* | ||
1/E/758:763, 1/E/768:773 | homologous IL_5TBW_026 | NA IL_19954.1* | ||
1/E/803:805, 1/E/938:940 | homologous IL_5TBW_027 | NA IL_01312.13* | ||
1/E/805:809, 1/E/931:938 | geometric IL_5TBW_028 | NA IL_17470.5* | ||
1/E/833:834, 1/E/859:861 | Single bulged G homologous IL_5TBW_029 | NA IL_99645.1* | ||
1/E/834:838, 1/E/855:859 | Triple sheared geometric IL_5J7L_263 | NA IL_56467.6* | ||
1/E/869:872, 1/E/888:890 | Major groove platform with extra cWW homologous IL_5TBW_031 | NA IL_95485.6* | ||
1/E/873:875, 1/E/886:887 | Single bulged U homologous IL_5TBW_032 | NA IL_83039.11* | ||
1/E/907:909, 1/E/919:923 | Multiple bulged bases geometric IL_5TBW_033 | NA IL_90991.5* | ||
1/E/954:956, 1/E/965:967 | homologous IL_5TBW_034 | NA IL_01312.13* | ||
1/E/969:970, 1/E/1111:1113 | Single stack bend homologous IL_5TBW_035 | NA IL_04038.4* | ||
1/E/977:982, 1/E/1101:1104 | NA | NA | ||
1/E/983:985, 1/E/1099:1100 | Single bulged G homologous IL_5TBW_037 | NA IL_59137.10* | ||
1/E/991:997, 1/E/1052:1058 | 7x7 Sarcin-Ricin with intercalated A; G-bulge geometric IL_5TBW_038 | NA IL_93830.2* | ||
1/E/997:998, 1/E/1050:1052 | Minor groove platform homologous IL_5TBW_039 | NA IL_06437.11* | ||
1/E/999:1004, 1/E/1046:1049 | C-loop homologous IL_5TBW_040 | NA IL_63596.4* | ||
1/E/1006:1009, 1/E/1041:1044 | Tandem non-canonical cWW pairs homologous IL_5TBW_041 | NA IL_85877.10* | ||
1/E/1009:1011, 1/E/1039:1041 | geometric IL_5J7L_061 | NA IL_01312.13* | ||
1/E/1013:1018, 1/E/1034:1037 | Other IL homologous IL_5TBW_043 | NA IL_08757.3* | ||
1/E/1069:1071, 1/E/1087:1089 | homologous IL_5TBW_044 | NA IL_01312.13* | ||
1/E/1074:1076, 1/E/1083:1084 | Single bulged A homologous IL_5TBW_045 | NA IL_80007.16* | ||
1/E/1120:1122, 1/E/1136:1138 | homologous IL_5TBW_046 | NA IL_01312.13* | ||
1/E/1167:1171, 1/E/1328:1332 | UAA/GAN homologous IL_5TBW_048 | NA IL_53523.5* | ||
1/E/1173:1180, 1/E/1325:1326 | SSU/LSU pseudoknot homologous IL_5TBW_049 | NA IL_15861.6* | ||
1/E/1180:1182, 1/E/1324:1325 | Single bulged U geometric IL_5TBW_050 | NA IL_83039.11* | ||
1/E/1187:1194, 1/E/1314:1319 | geometric IL_5TBW_051 | NA IL_17971.1* | ||
1/E/1194:1205, 1/E/1299:1314 | homologous IL_5TBW_052 | NA IL_94878.1* | ||
1/E/1207:1209, 1/E/1296:1297 | Single bulged U homologous IL_5TBW_053 | NA IL_83039.11* | ||
1/E/1218:1226, 1/E/1283:1287 | Kink-turn homologous IL_5TBW_054 | NA IL_90538.3* | ||
1/E/1233:1239, 1/E/1250:1255 | NA | NA | ||
1/E/1262:1266, 1/E/1275:1277 | Major groove platform with extra cWW homologous IL_5TBW_056 | NA IL_95485.6* | ||
1/E/1376:1378, 1/E/1428:1431 | Isolated cWS basepair homologous IL_5TBW_057 | NA IL_01312.13* | ||
1/E/1385:1387, 1/E/1420:1421 | Single bulged A homologous IL_5TBW_058 | NA IL_80007.16* | ||
1/E/1388:1395, 1/E/1415:1419 | Kink-turn homologous IL_5TBW_059 | NA IL_29549.9* | ||
1/E/1398:1400, 1/E/1411:1412 | Single bulged A homologous IL_5TBW_060 | NA IL_80007.16* | ||
1/E/1444:1450, 1/E/2354:2359 | 7x6 Sarcin-Ricin; G-bulge homologous IL_5TBW_061 | NA IL_35110.5* | ||
1/E/1501:1505, 1/E/1513:1515 | Major groove minor groove platform with tHH geometric IL_4WF9_050 | NA IL_28060.3* | ||
1/E/1532:1536, 1/E/1585:1590 | UAA/GAN homologous IL_5TBW_063 | NA IL_53523.5* | ||
1/E/1561:1563, 1/E/1577:1578 | Single stack bend geometric IL_4LFB_041 | NA IL_04038.4* | ||
1/E/1563:1565, 1/E/1574:1577 | NA | NA | ||
1/E/1618:1621, 1/E/1824:1826 | Other IL homologous IL_5TBW_064 | NA IL_87630.5* | ||
1/E/1623:1624, 1/E/1819:1822 | Multiple bulged bases geometric IL_4V9F_021 | NA IL_13730.12* | ||
1/E/1624:1631, 1/E/1811:1819 | NA | NA | ||
1/E/1645:1649, 1/E/1806:1810 | Triple sheared geometric IL_5TBW_067 | NA IL_56467.6* | ||
1/E/1661:1663, 1/E/1786:1788 | homologous IL_5TBW_068 | NA IL_01312.13* | ||
1/E/1669:1670, 1/E/1778:1780 | Single bulged C geometric IL_5TBW_069 | NA IL_61258.10* | ||
1/E/1670:1671, 1/E/1776:1778 | Single stack bend homologous IL_5TBW_070 | NA IL_72766.2* | ||
1/E/1694:1698, 1/E/1747:1752 | homologous IL_5TBW_071 | NA IL_14397.1* | ||
1/E/1702:1707, 1/E/1737:1743 | homologous IL_5TBW_072 | NA IL_98876.1* | ||
1/E/1711:1717, 1/E/1727:1733 | Kink-turn homologous IL_5TBW_073 | NA IL_76900.1* | ||
1/E/1883:1889, 1/E/2346:2349 | homologous IL_5TBW_074 | NA IL_79393.8* | ||
1/E/1895:1897, 1/E/2338:2340 | Isolated tWW turn homologous IL_5TBW_075 | NA IL_54997.5* | ||
1/E/1898:1901, 1/E/2336:2337 | Major groove platform; stack outside cWW geometric IL_5TBW_076 | NA IL_80663.10* | ||
1/E/1901:1906, 1/E/2333:2336 | Intercalated tWH homologous IL_5TBW_077 | NA IL_98882.3* | ||
1/E/1918:1923, 1/E/1928:1934 | tSH-tSH-tHH-tHS geometric IL_4V9F_063 | NA IL_66584.5* | ||
1/E/1940:1942, 1/E/2106:2108 | homologous IL_5TBW_079 | NA IL_01312.13* | ||
1/E/1947:1948, 1/E/2098:2101 | homologous IL_5TBW_080 | NA IL_76195.1* | ||
1/E/2128:2129, 1/E/2323:2325 | Single bulged A homologous IL_5TBW_082 | NA IL_80007.16* | ||
1/E/2156:2161, 1/E/2173:2180 | Kink-turn related homologous IL_5TBW_083 | NA IL_95993.1* | ||
1/E/2196:2199, 1/E/2245:2246 | Major groove outside cWW, minor groove, intercalation pocket homologous IL_5TBW_084 | NA IL_72766.2* | ||
1/E/2200:2201, 1/E/2241:2244 | Major groove outside cWW, minor groove, intercalation pocket homologous IL_5TBW_085 | NA IL_13730.12* | ||
1/E/2204:2206, 1/E/2237:2238 | Single bulged U homologous IL_5TBW_086 | NA IL_21340.1* | ||
1/E/2206:2210, 1/E/2235:2237 | Major groove platform with extra pair geometric IL_5TBW_087 | NA IL_87630.5* | ||
1/E/2211:2217, 1/E/2228:2234 | homologous IL_5TBW_088 | NA IL_36973.5* | ||
1/E/2276:2277, 1/E/2307:2310 | Multiple bulged bases homologous IL_5TBW_089 | NA IL_69632.1* | ||
1/E/2277:2288, 1/E/2304:2307 | geometric IL_5TBW_090 | NA IL_45481.1* | ||
1/E/2391:2394, 1/E/2986:2988 | Major groove platform with extra pair homologous IL_5TBW_091 | NA IL_87630.5* | ||
1/E/2396:2398, 1/E/2981:2984 | Minor groove platform with intercalation homologous IL_5TBW_092 | NA IL_86964.1* | ||
1/E/2409:2411, 1/E/2811:2812 | Single bulged U homologous IL_5TBW_093 | NA IL_83039.11* | ||
1/E/2412:2413, 1/E/2807:2810 | Minor groove platform homologous IL_5TBW_094 | NA IL_06437.11* | ||
1/E/2423:2425, 1/E/2604:2607 | Isolated tHS basepair with bulges homologous IL_5TBW_095 | NA IL_38958.6* | ||
1/E/2444:2446, 1/E/2500:2503 | NA | NA | ||
1/E/2520:2526, 1/E/2584:2587 | homologous IL_5TBW_096 | NA IL_98353.1* | ||
1/E/2614:2615, 1/E/2625:2627 | Single bulged A homologous IL_5TBW_098 | NA IL_80007.16* | ||
1/E/2666:2668, 1/E/2686:2690 | Isolated tHS basepair with bulges homologous IL_5TBW_099 | NA IL_38958.6* | ||
1/E/2718:2721, 1/E/2735:2738 | Tandem non-canonical cWW pairs homologous IL_5TBW_100 | NA IL_85877.10* | ||
1/E/2770:2773, 1/E/2787:2788 | Single stack bend with bulge homologous IL_5TBW_101 | NA IL_31836.1* | ||
1/E/2823:2824, 1/E/2865:2867 | Major groove platform homologous IL_5TBW_102 | NA IL_80663.10* | ||
1/E/2824:2826, 1/E/2863:2865 | geometric IL_5TBW_103 | NA IL_05265.1* | ||
1/E/2826:2828, 1/E/2862:2863 | Major groove platform geometric IL_5TBW_104 | NA IL_80663.10* | ||
1/E/2828:2830, 1/E/2858:2862 | homologous IL_5TBW_105 | NA IL_07931.5* | ||
1/E/2835:2839, 1/E/2849:2853 | Triple sheared homologous IL_5TBW_106 | NA IL_56467.6* | ||
1/E/2876:2877, 1/E/2949:2951 | Major groove platform homologous IL_5TBW_107 | NA IL_80663.10* | ||
1/E/2879:2881, 1/E/2943:2947 | Isolated non-canonical cWW with bulges geometric IL_5TBW_108 | NA IL_01312.13* | ||
1/E/2881:2882, 1/E/2940:2943 | Multiple bulged bases homologous IL_5TBW_109 | NA IL_13730.12* | ||
1/E/2889:2891, 1/E/2912:2914 | geometric IL_5TBW_110 | NA IL_01312.13* | ||
1/E/2891:2892, 1/E/2909:2912 | Minor groove platform with intercalation homologous IL_5TBW_111 | NA IL_95601.1* | ||
1/E/2918:2920, 1/E/2926:2928 | homologous IL_5TBW_112 | NA IL_01312.13* | ||
1/E/2960:2961, 1/E/2970:2972 | Single bulged A geometric IL_7RQB_101 | NA IL_80007.16* | ||
1/E/3004:3007, 1/E/3139:3144 | Double sheared homologous IL_5TBW_114 | NA IL_09705.7* | ||
1/E/3012:3014, 1/E/3040:3042 | homologous IL_5TBW_115 | NA IL_01312.13* | ||
1/E/3018:3025, 1/E/3030:3036 | 8x7 Sarcin-Ricin; G-bulge geometric IL_5TBW_116 | NA IL_04346.5* | ||
1/E/3046:3051, 1/E/3091:3095 | NA | NA | ||
1/E/3054:3059, 1/E/3084:3088 | UAA/GAN related homologous IL_5TBW_118 | NA IL_53523.5* | ||
1/E/3063:3064, 1/E/3077:3080 | Multiple bulged bases homologous IL_5TBW_119 | NA IL_13730.12* | ||
1/E/3103:3107, 1/E/3127:3131 | UAA/GAN homologous IL_5TBW_120 | NA IL_53523.5* | ||
1/E/3164:3166, 1/E/3284:3286 | geometric IL_4WF9_083 | NA IL_01312.13* | ||
1/E/3168:3170, 1/E/3280:3282 | homologous IL_5TBW_122 | NA IL_01312.13* | ||
1/E/3177:3179, 1/E/3210:3211 | Single bulged A geometric IL_5TBW_123 | NA IL_80007.16* | ||
1/E/3179:3188, 1/E/3204:3210 | homologous IL_5TBW_124 | NA IL_56867.1* | ||
1/E/3193:3194, 1/E/3197:3199 | Single bulged U homologous IL_5TBW_125 | NA IL_83039.11* | ||
1/E/3225:3229, 1/E/3258:3260 | homologous IL_5TBW_126 | NA IL_50789.1* | ||
1/E/3233:3235, 1/E/3252:3254 | geometric IL_4M4O_002 | NA IL_01312.13* | ||
1/E/3235:3238, 1/E/3249:3252 | Tandem non-canonical cWW pairs homologous IL_5TBW_128 | NA IL_85877.10* | ||
1/E/3300:3303, 1/E/3311:3314 | Tandem non-canonical cWW pairs geometric IL_5TBW_129 | NA IL_85877.10* | ||
1/E/3318:3320, 1/E/3387:3388 | Single bulged U geometric IL_5J7L_298 | NA IL_83039.11* | ||
1/E/3324:3325, 1/E/3381:3383 | Single bulged U homologous IL_5TBW_131 | NA IL_21340.1* | ||
1/E/3328:3330, 1/E/3373:3378 | Isolated non-canonical cWW with bulges homologous IL_5TBW_132 | NA IL_55456.1* | ||
1/E/3332:3337, 1/E/3367:3371 | homologous IL_5TBW_133 | NA IL_47002.1* | ||
1/E/3340:3342, 1/E/3363:3364 | Single bulged U geometric IL_5TBW_134 | NA IL_83039.11* | ||
1/E/3342:3345, 1/E/3360:3363 | tWS-tSW homologous IL_5TBW_135 | NA IL_09705.7* | ||
1/E/3349:3350, 1/E/3353:3356 | Multiple bulged bases homologous IL_5TBW_136 | NA IL_13730.12* | ||
1/F/15:16, 1/F/63:65 | NA | NA | ||
1/F/21:27, 1/F/53:58 | NA | NA | ||
1/F/28:29, 1/F/49:52 | NA | NA | ||
1/F/29:30, 1/F/47:49 | NA | NA | ||
1/F/32:36, 1/F/41:45 | NA | NA | ||
1/F/72:80, 1/F/100:106 | NA | NA | ||
1/F/84:87, 1/F/94:96 | NA | NA | ||
1/G/64:66, 1/G/93:96 | Isolated non-canonical cWW with bulges geometric IL_5TBW_145 | NA IL_55456.1* | ||
1/G/68:69, 1/G/89:91 | Single bulged U homologous IL_5TBW_146 | NA IL_83039.11* |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
IL_7AZY_016 | homologous IL_5TBW_017 |
Valid loops
# | loop id | location | annotation (mapped to, source) | motif group (similar to) |
---|---|---|---|---|
1/E/113:123, 1/E/149:158, 1/E/263:267 | homologous J3_5TBW_001 | NA | ||
1/E/369:376, 1/E/403:404, 1/G/19:20 | NA | NA | ||
1/E/502:503, 1/E/588:597, 1/E/606:611 | homologous J3_5TBW_003 | NA | ||
1/E/814:820, 1/E/905:907, 1/E/923:926 | homologous J3_5TBW_004 | NA | ||
1/E/828:831, 1/E/863:867, 1/E/892:897 | homologous J3_5TBW_005 | NA | ||
1/E/986:987, 1/E/1062:1066, 1/E/1092:1098 | homologous J3_5TBW_006 | NA | ||
1/E/1230:1232, 1/E/1256:1262, 1/E/1277:1279 | NA | NA | ||
1/E/1479:1485, 1/E/1857:1859, 1/E/1871:1874 | homologous J3_5TBW_008 | NA | ||
1/E/1488:1491, 1/E/1837:1843, 1/E/1852:1854 | homologous J3_5TBW_009 | NA | ||
1/E/1526:1531, 1/E/1591:1595, 1/E/1612:1613 | homologous J3_5TBW_010 | NA | ||
1/E/1631:1632, 1/E/1641:1645, 1/E/1810:1811 | NA | NA | ||
1/E/2432:2435, 1/E/2512:2517, 1/E/2590:2597 | homologous J3_5TBW_012 | NA | ||
1/E/2529:2532, 1/E/2547:2563, 1/E/2578:2581 | NA | NA | ||
1/E/2664:2666, 1/E/2690:2692, 1/E/2701:2706 | NA | NA | ||
1/E/2886:2889, 1/E/2914:2916, 1/E/2930:2936 | homologous J3_5TBW_014 | NA | ||
1/E/3298:3300, 1/E/3314:3318, 1/E/3388:3390 | homologous J3_5TBW_015 | NA | ||
1/F/9:14, 1/F/66:67, 1/F/111:112 | NA | NA | ||
1/G/44:45, 1/G/58:64, 1/G/96:100 | NA | NA |
Problematic loops
No problematic loops
Coloring options: