7AZY | Motifs

77 Hairpin loops
144 Internal loops
18 Junction loops

Valid loops

#	loop id	location	annotation (mapped to, source)	motif group (similar to)
1	HL_7AZY_001	1/E/38:45	geometric HL_4V9F_006	NA HL_23481.5*
2	HL_7AZY_002	1/E/69:74	homologous HL_5TBW_002	NA HL_96776.3*
3	HL_7AZY_003	1/E/90:96	homologous HL_5TBW_003	NA HL_67216.5*
4	HL_7AZY_004	1/E/132:136	homologous HL_5TBW_004	NA HL_36982.3*
5	HL_7AZY_005	1/E/194:201	T-loop with 1 bulged base homologous HL_5TBW_005	NA HL_68493.6*
6	HL_7AZY_006	1/E/208:212	homologous HL_5TBW_006	NA HL_98557.5*
7	HL_7AZY_007	1/E/216:224	homologous HL_5TBW_007	NA HL_08002.6*
8	HL_7AZY_008	1/E/278:287	homologous HL_5TBW_008	NA HL_54035.7*
9	HL_7AZY_009	1/E/303:312	homologous HL_5TBW_009	NA HL_46142.8*
10	HL_7AZY_010	1/E/357:362	Other HL homologous HL_5TBW_010	NA HL_43074.18*
11	HL_7AZY_011	1/E/382:387	GNRA homologous HL_5TBW_011	NA HL_43074.18*
12	HL_7AZY_012	1/E/543:548	NA	NA
13	HL_7AZY_013	1/E/599:604	GNRA homologous HL_5TBW_013	NA HL_43074.18*
14	HL_7AZY_014	1/E/640:649	T-loop with 2 stacked bulged bases homologous HL_5TBW_014	NA HL_33239.17*
15	HL_7AZY_015	1/E/686:694	homologous HL_5TBW_015	NA HL_80105.3*
16	HL_7AZY_016	1/E/707:712	GNRA homologous HL_5TBW_016	NA HL_43074.18*
17	HL_7AZY_017	1/E/732:737	GNRA homologous HL_5TBW_017	NA HL_43074.18*
18	HL_7AZY_018	1/E/763:768	geometric HL_5TBW_018	NA HL_00996.1*
19	HL_7AZY_019	1/E/844:849	GNRA homologous HL_5TBW_019	NA HL_43074.18*
20	HL_7AZY_020	1/E/876:885	homologous HL_5TBW_020	NA HL_39334.5*
21	HL_7AZY_021	1/E/910:918	homologous HL_5TBW_021	NA HL_05832.1*
22	HL_7AZY_022	1/E/958:963	homologous HL_5TBW_022	NA HL_15942.5*
23	HL_7AZY_023	1/E/1023:1029	GNRA homologous HL_5TBW_023	NA HL_43074.18*
24	HL_7AZY_024	1/E/1076:1083	geometric HL_5TBW_024	NA HL_54035.7*
25	HL_7AZY_025	1/E/1126:1132	GNRA homologous HL_5TBW_025	NA HL_43074.18*
26	HL_7AZY_026	1/E/1148:1155	homologous HL_5TBW_026	NA HL_72451.5*
27	HL_7AZY_027	1/E/1239:1250	NA	NA
28	HL_7AZY_028	1/E/1266:1275	NA	NA
29	HL_7AZY_029	1/E/1347:1357	geometric HL_4OOG_001	NA HL_68529.2*
30	HL_7AZY_030	1/E/1403:1408	GNRA homologous HL_5TBW_030	NA HL_43074.18*
31	HL_7AZY_031	1/E/1462:1470	T-loop with 2 stacked bulged bases homologous HL_5TBW_031	NA HL_33239.17*
32	HL_7AZY_032	1/E/1506:1512	homologous HL_5TBW_032	NA HL_86880.5*
33	HL_7AZY_033	1/E/1544:1549	Other HL homologous HL_5TBW_033	NA HL_43074.18*
34	HL_7AZY_034	1/E/1565:1574	NA	NA
35	HL_7AZY_035	1/E/1599:1608	homologous HL_5TBW_035	NA HL_78457.4*
36	HL_7AZY_036	1/E/1634:1639	GNRA homologous HL_5TBW_036	NA HL_43074.18*
37	HL_7AZY_037	1/E/1680:1688	homologous HL_5TBW_037	NA HL_73793.2*
38	HL_7AZY_038	1/E/1719:1725	homologous HL_5TBW_038	NA HL_00923.1*
39	HL_7AZY_039	1/E/1760:1765	geometric HL_2Y9H_003	NA HL_98557.5*
40	HL_7AZY_040	1/E/1792:1796	homologous HL_5TBW_040	NA HL_69353.7*
41	HL_7AZY_041	1/E/1844:1851	homologous HL_5TBW_041	NA HL_66171.3*
42	HL_7AZY_042	1/E/1862:1868	GNRA with one bulged base homologous HL_5TBW_042	NA HL_02361.6*
43	HL_7AZY_043	1/E/1923:1928	UNCG homologous HL_5TBW_043	NA HL_79299.11*
44	HL_7AZY_045	1/E/2110:2114	homologous HL_5TBW_045	NA HL_99223.1*
45	HL_7AZY_046	1/E/2135:2145	homologous HL_5TBW_046	NA HL_43613.4*
46	HL_7AZY_047	1/E/2164:2170	GNRA homologous HL_5TBW_047	NA HL_43074.18*
47	HL_7AZY_048	1/E/2220:2225	Other HL homologous HL_5TBW_048	NA HL_43074.18*
48	HL_7AZY_049	1/E/2253:2263	homologous HL_5TBW_049	NA HL_98248.1*
49	HL_7AZY_050	1/E/2292:2300	homologous HL_5TBW_050	NA HL_53760.4*
50	HL_7AZY_051	1/E/2369:2378	homologous HL_5TBW_051	NA HL_90642.5*
51	HL_7AZY_052	1/E/2535:2544	NA	NA
52	HL_7AZY_053	1/E/2568:2573	NA	NA
53	HL_7AZY_054	1/E/2616:2624	homologous HL_5TBW_054	NA HL_46891.3*
54	HL_7AZY_055	1/E/2633:2645	homologous HL_5TBW_055	NA HL_19870.5*
55	HL_7AZY_056	1/E/2673:2681	homologous HL_5TBW_056	NA HL_76406.3*
56	HL_7AZY_057	1/E/2693:2700	homologous HL_5TBW_057	NA HL_46142.8*
57	HL_7AZY_058	1/E/2724:2732	homologous HL_5TBW_058	NA HL_14725.1*
58	HL_7AZY_059	1/E/2744:2749	GNRA homologous HL_5TBW_059	NA HL_43074.18*
59	HL_7AZY_060	1/E/2776:2784	homologous HL_5TBW_060	NA HL_46142.8*
60	HL_7AZY_061	1/E/2840:2848	homologous HL_5TBW_061	NA HL_36421.5*
61	HL_7AZY_062	1/E/2897:2904	homologous HL_5TBW_062	NA HL_92681.5*
62	HL_7AZY_063	1/E/2920:2926	geometric HL_5TBW_063	NA HL_26055.6*
63	HL_7AZY_064	1/E/2963:2968	GNRA homologous HL_5TBW_064	NA HL_43074.18*
64	HL_7AZY_065	1/E/3025:3030	GNRA homologous HL_5TBW_065	NA HL_43074.18*
65	HL_7AZY_066	1/E/3068:3073	Ribsomal LSU H95 homologous HL_5TBW_066	NA HL_67719.1*
66	HL_7AZY_067	1/E/3110:3124	homologous HL_5TBW_067	NA HL_56677.5*
67	HL_7AZY_068	1/E/3194:3197	geometric HL_5TBW_068	NA HL_46546.1*
68	HL_7AZY_069	1/E/3240:3247	homologous HL_5TBW_069	NA HL_27757.1*
69	HL_7AZY_070	1/E/3303:3311	geometric HL_5TBW_070	NA HL_05018.6*
70	HL_7AZY_071	1/E/3350:3353	geometric HL_6JOO_002	NA HL_69353.7*
71	HL_7AZY_072	1/F/36:41	NA	NA
72	HL_7AZY_073	1/F/88:93	NA	NA
73	HL_7AZY_074	1/G/47:56	geometric HL_7A0S_001	NA HL_29414.1*
74	HL_7AZY_075	1/G/69:89	NA	NA
75	HL_7AZY_076	1/G/108:114	homologous HL_5TBW_075	NA HL_06569.2*
76	HL_7AZY_077	1/G/124:129	homologous HL_5TBW_076	NA HL_60357.1*

Problematic loops

#	loop id	Problem	Sequence
1	HL_7AZY_044	missing nts	geometric HL_7RQB_011

Valid loops

#	loop id	location	annotation (mapped to, source)	motif group (similar to)
1	IL_7AZY_001	1/E/7:8, 1/G/150:152	Single bulged C homologous IL_5TBW_002	NA IL_61258.10*
2	IL_7AZY_002	1/E/13:15, 1/G/144:145	Single bulged U homologous IL_5TBW_003	NA IL_83039.11*
3	IL_7AZY_003	1/E/27:28, 1/E/56:58	Single stack bend homologous IL_5TBW_004	NA IL_04038.4*
4	IL_7AZY_004	1/E/31:38, 1/E/45:53	tSH-tHW-tHH-tHS homologous IL_5TBW_005	NA IL_22863.1*
5	IL_7AZY_005	1/E/82:89, 1/E/97:103	homologous IL_5TBW_006	NA IL_29509.1*
6	IL_7AZY_006	1/E/123:124, 1/E/144:149	geometric IL_5TBW_007	NA IL_19724.1*
7	IL_7AZY_007	1/E/125:127, 1/E/141:143	homologous IL_5TBW_008	NA IL_01312.13*
8	IL_7AZY_008	1/E/163:165, 1/E/257:258	Single stack bend homologous IL_5TBW_009	NA IL_04038.4*
9	IL_7AZY_009	1/E/169:170, 1/E/248:253	homologous IL_5TBW_010	NA IL_76195.1*
10	IL_7AZY_010	1/E/177:178, 1/E/238:241	Minor groove platform geometric IL_4KQY_004	NA IL_95601.1*
11	IL_7AZY_011	1/E/189:191, 1/E/204:205	Single bulged U homologous IL_5TBW_012	NA IL_83039.11*
12	IL_7AZY_012	1/E/337:339, 1/G/25:26	Single bulged A homologous IL_5TBW_013	NA IL_80007.16*
13	IL_7AZY_013	1/E/376:379, 1/E/390:403	homologous IL_5TBW_014	NA IL_60992.5*
14	IL_7AZY_014	1/E/404:410, 1/G/13:19	Triple sheared with non-canonical cWW homologous IL_5TBW_015	NA IL_66414.5*
15	IL_7AZY_015	1/E/429:431, 1/E/628:630	homologous IL_5TBW_016	NA IL_01312.13*
16	IL_7AZY_017	1/E/512:513, 1/E/577:579	Single bulged A homologous IL_5TBW_018	NA IL_40508.4*
17	IL_7AZY_018	1/E/517:525, 1/E/567:573	homologous IL_5TBW_019	NA IL_41593.1*
18	IL_7AZY_019	1/E/531:538, 1/E/553:561	homologous IL_5TBW_020	NA IL_94501.1*
19	IL_7AZY_020	1/E/668:670, 1/E/792:794	homologous IL_5TBW_021	NA IL_01312.13*
20	IL_7AZY_021	1/E/680:684, 1/E/696:700	homologous IL_5TBW_022	NA IL_92343.1*
21	IL_7AZY_022	1/E/725:728, 1/E/741:745	UAA/GAN homologous IL_5TBW_023	NA IL_53523.5*
22	IL_7AZY_023	1/E/752:753, 1/E/779:781	Single bulged A homologous IL_5TBW_024	NA IL_80007.16*
23	IL_7AZY_024	1/E/755:756, 1/E/775:777	Single bulged U homologous IL_5TBW_025	NA IL_83039.11*
24	IL_7AZY_025	1/E/758:763, 1/E/768:773	homologous IL_5TBW_026	NA IL_19954.1*
25	IL_7AZY_026	1/E/803:805, 1/E/938:940	homologous IL_5TBW_027	NA IL_01312.13*
26	IL_7AZY_027	1/E/805:809, 1/E/931:938	geometric IL_5TBW_028	NA IL_17470.5*
27	IL_7AZY_028	1/E/833:834, 1/E/859:861	Single bulged G homologous IL_5TBW_029	NA IL_99645.1*
28	IL_7AZY_029	1/E/834:838, 1/E/855:859	Triple sheared geometric IL_5J7L_263	NA IL_56467.6*
29	IL_7AZY_030	1/E/869:872, 1/E/888:890	Major groove platform with extra cWW homologous IL_5TBW_031	NA IL_95485.6*
30	IL_7AZY_031	1/E/873:875, 1/E/886:887	Single bulged U homologous IL_5TBW_032	NA IL_83039.11*
31	IL_7AZY_032	1/E/907:909, 1/E/919:923	Multiple bulged bases geometric IL_5TBW_033	NA IL_90991.5*
32	IL_7AZY_033	1/E/954:956, 1/E/965:967	homologous IL_5TBW_034	NA IL_01312.13*
33	IL_7AZY_034	1/E/969:970, 1/E/1111:1113	Single stack bend homologous IL_5TBW_035	NA IL_04038.4*
34	IL_7AZY_035	1/E/977:982, 1/E/1101:1104	NA	NA
35	IL_7AZY_036	1/E/983:985, 1/E/1099:1100	Single bulged G homologous IL_5TBW_037	NA IL_59137.10*
36	IL_7AZY_037	1/E/991:997, 1/E/1052:1058	7x7 Sarcin-Ricin with intercalated A; G-bulge geometric IL_5TBW_038	NA IL_93830.2*
37	IL_7AZY_038	1/E/997:998, 1/E/1050:1052	Minor groove platform homologous IL_5TBW_039	NA IL_06437.11*
38	IL_7AZY_039	1/E/999:1004, 1/E/1046:1049	C-loop homologous IL_5TBW_040	NA IL_63596.4*
39	IL_7AZY_040	1/E/1006:1009, 1/E/1041:1044	Tandem non-canonical cWW pairs homologous IL_5TBW_041	NA IL_85877.10*
40	IL_7AZY_041	1/E/1009:1011, 1/E/1039:1041	geometric IL_5J7L_061	NA IL_01312.13*
41	IL_7AZY_042	1/E/1013:1018, 1/E/1034:1037	Other IL homologous IL_5TBW_043	NA IL_08757.3*
42	IL_7AZY_043	1/E/1069:1071, 1/E/1087:1089	homologous IL_5TBW_044	NA IL_01312.13*
43	IL_7AZY_044	1/E/1074:1076, 1/E/1083:1084	Single bulged A homologous IL_5TBW_045	NA IL_80007.16*
44	IL_7AZY_045	1/E/1120:1122, 1/E/1136:1138	homologous IL_5TBW_046	NA IL_01312.13*
45	IL_7AZY_046	1/E/1167:1171, 1/E/1328:1332	UAA/GAN homologous IL_5TBW_048	NA IL_53523.5*
46	IL_7AZY_047	1/E/1173:1180, 1/E/1325:1326	SSU/LSU pseudoknot homologous IL_5TBW_049	NA IL_15861.6*
47	IL_7AZY_048	1/E/1180:1182, 1/E/1324:1325	Single bulged U geometric IL_5TBW_050	NA IL_83039.11*
48	IL_7AZY_049	1/E/1187:1194, 1/E/1314:1319	geometric IL_5TBW_051	NA IL_17971.1*
49	IL_7AZY_050	1/E/1194:1205, 1/E/1299:1314	homologous IL_5TBW_052	NA IL_94878.1*
50	IL_7AZY_051	1/E/1207:1209, 1/E/1296:1297	Single bulged U homologous IL_5TBW_053	NA IL_83039.11*
51	IL_7AZY_052	1/E/1218:1226, 1/E/1283:1287	Kink-turn homologous IL_5TBW_054	NA IL_90538.3*
52	IL_7AZY_053	1/E/1233:1239, 1/E/1250:1255	NA	NA
53	IL_7AZY_054	1/E/1262:1266, 1/E/1275:1277	Major groove platform with extra cWW homologous IL_5TBW_056	NA IL_95485.6*
54	IL_7AZY_055	1/E/1376:1378, 1/E/1428:1431	Isolated cWS basepair homologous IL_5TBW_057	NA IL_01312.13*
55	IL_7AZY_056	1/E/1385:1387, 1/E/1420:1421	Single bulged A homologous IL_5TBW_058	NA IL_80007.16*
56	IL_7AZY_057	1/E/1388:1395, 1/E/1415:1419	Kink-turn homologous IL_5TBW_059	NA IL_29549.9*
57	IL_7AZY_058	1/E/1398:1400, 1/E/1411:1412	Single bulged A homologous IL_5TBW_060	NA IL_80007.16*
58	IL_7AZY_059	1/E/1444:1450, 1/E/2354:2359	7x6 Sarcin-Ricin; G-bulge homologous IL_5TBW_061	NA IL_35110.5*
59	IL_7AZY_060	1/E/1501:1505, 1/E/1513:1515	Major groove minor groove platform with tHH geometric IL_4WF9_050	NA IL_28060.3*
60	IL_7AZY_061	1/E/1532:1536, 1/E/1585:1590	UAA/GAN homologous IL_5TBW_063	NA IL_53523.5*
61	IL_7AZY_062	1/E/1561:1563, 1/E/1577:1578	Single stack bend geometric IL_4LFB_041	NA IL_04038.4*
62	IL_7AZY_063	1/E/1563:1565, 1/E/1574:1577	NA	NA
63	IL_7AZY_064	1/E/1618:1621, 1/E/1824:1826	Other IL homologous IL_5TBW_064	NA IL_87630.5*
64	IL_7AZY_065	1/E/1623:1624, 1/E/1819:1822	Multiple bulged bases geometric IL_4V9F_021	NA IL_13730.12*
65	IL_7AZY_066	1/E/1624:1631, 1/E/1811:1819	NA	NA
66	IL_7AZY_067	1/E/1645:1649, 1/E/1806:1810	Triple sheared geometric IL_5TBW_067	NA IL_56467.6*
67	IL_7AZY_068	1/E/1661:1663, 1/E/1786:1788	homologous IL_5TBW_068	NA IL_01312.13*
68	IL_7AZY_069	1/E/1669:1670, 1/E/1778:1780	Single bulged C geometric IL_5TBW_069	NA IL_61258.10*
69	IL_7AZY_070	1/E/1670:1671, 1/E/1776:1778	Single stack bend homologous IL_5TBW_070	NA IL_72766.2*
70	IL_7AZY_071	1/E/1694:1698, 1/E/1747:1752	homologous IL_5TBW_071	NA IL_14397.1*
71	IL_7AZY_072	1/E/1702:1707, 1/E/1737:1743	homologous IL_5TBW_072	NA IL_98876.1*
72	IL_7AZY_073	1/E/1711:1717, 1/E/1727:1733	Kink-turn homologous IL_5TBW_073	NA IL_76900.1*
73	IL_7AZY_074	1/E/1883:1889, 1/E/2346:2349	homologous IL_5TBW_074	NA IL_79393.8*
74	IL_7AZY_075	1/E/1895:1897, 1/E/2338:2340	Isolated tWW turn homologous IL_5TBW_075	NA IL_54997.5*
75	IL_7AZY_076	1/E/1898:1901, 1/E/2336:2337	Major groove platform; stack outside cWW geometric IL_5TBW_076	NA IL_80663.10*
76	IL_7AZY_077	1/E/1901:1906, 1/E/2333:2336	Intercalated tWH homologous IL_5TBW_077	NA IL_98882.3*
77	IL_7AZY_078	1/E/1918:1923, 1/E/1928:1934	tSH-tSH-tHH-tHS geometric IL_4V9F_063	NA IL_66584.5*
78	IL_7AZY_079	1/E/1940:1942, 1/E/2106:2108	homologous IL_5TBW_079	NA IL_01312.13*
79	IL_7AZY_080	1/E/1947:1948, 1/E/2098:2101	homologous IL_5TBW_080	NA IL_76195.1*
80	IL_7AZY_081	1/E/2128:2129, 1/E/2323:2325	Single bulged A homologous IL_5TBW_082	NA IL_80007.16*
81	IL_7AZY_082	1/E/2156:2161, 1/E/2173:2180	Kink-turn related homologous IL_5TBW_083	NA IL_95993.1*
82	IL_7AZY_083	1/E/2196:2199, 1/E/2245:2246	Major groove outside cWW, minor groove, intercalation pocket homologous IL_5TBW_084	NA IL_72766.2*
83	IL_7AZY_084	1/E/2200:2201, 1/E/2241:2244	Major groove outside cWW, minor groove, intercalation pocket homologous IL_5TBW_085	NA IL_13730.12*
84	IL_7AZY_085	1/E/2204:2206, 1/E/2237:2238	Single bulged U homologous IL_5TBW_086	NA IL_21340.1*
85	IL_7AZY_086	1/E/2206:2210, 1/E/2235:2237	Major groove platform with extra pair geometric IL_5TBW_087	NA IL_87630.5*
86	IL_7AZY_087	1/E/2211:2217, 1/E/2228:2234	homologous IL_5TBW_088	NA IL_36973.5*
87	IL_7AZY_088	1/E/2276:2277, 1/E/2307:2310	Multiple bulged bases homologous IL_5TBW_089	NA IL_69632.1*
88	IL_7AZY_089	1/E/2277:2288, 1/E/2304:2307	geometric IL_5TBW_090	NA IL_45481.1*
89	IL_7AZY_090	1/E/2391:2394, 1/E/2986:2988	Major groove platform with extra pair homologous IL_5TBW_091	NA IL_87630.5*
90	IL_7AZY_091	1/E/2396:2398, 1/E/2981:2984	Minor groove platform with intercalation homologous IL_5TBW_092	NA IL_86964.1*
91	IL_7AZY_092	1/E/2409:2411, 1/E/2811:2812	Single bulged U homologous IL_5TBW_093	NA IL_83039.11*
92	IL_7AZY_093	1/E/2412:2413, 1/E/2807:2810	Minor groove platform homologous IL_5TBW_094	NA IL_06437.11*
93	IL_7AZY_094	1/E/2423:2425, 1/E/2604:2607	Isolated tHS basepair with bulges homologous IL_5TBW_095	NA IL_38958.6*
94	IL_7AZY_095	1/E/2444:2446, 1/E/2500:2503	NA	NA
95	IL_7AZY_096	1/E/2520:2526, 1/E/2584:2587	homologous IL_5TBW_096	NA IL_98353.1*
96	IL_7AZY_097	1/E/2614:2615, 1/E/2625:2627	Single bulged A homologous IL_5TBW_098	NA IL_80007.16*
97	IL_7AZY_098	1/E/2666:2668, 1/E/2686:2690	Isolated tHS basepair with bulges homologous IL_5TBW_099	NA IL_38958.6*
98	IL_7AZY_099	1/E/2718:2721, 1/E/2735:2738	Tandem non-canonical cWW pairs homologous IL_5TBW_100	NA IL_85877.10*
99	IL_7AZY_100	1/E/2770:2773, 1/E/2787:2788	Single stack bend with bulge homologous IL_5TBW_101	NA IL_31836.1*
100	IL_7AZY_101	1/E/2823:2824, 1/E/2865:2867	Major groove platform homologous IL_5TBW_102	NA IL_80663.10*
101	IL_7AZY_102	1/E/2824:2826, 1/E/2863:2865	geometric IL_5TBW_103	NA IL_05265.1*
102	IL_7AZY_103	1/E/2826:2828, 1/E/2862:2863	Major groove platform geometric IL_5TBW_104	NA IL_80663.10*
103	IL_7AZY_104	1/E/2828:2830, 1/E/2858:2862	homologous IL_5TBW_105	NA IL_07931.5*
104	IL_7AZY_105	1/E/2835:2839, 1/E/2849:2853	Triple sheared homologous IL_5TBW_106	NA IL_56467.6*
105	IL_7AZY_106	1/E/2876:2877, 1/E/2949:2951	Major groove platform homologous IL_5TBW_107	NA IL_80663.10*
106	IL_7AZY_107	1/E/2879:2881, 1/E/2943:2947	Isolated non-canonical cWW with bulges geometric IL_5TBW_108	NA IL_01312.13*
107	IL_7AZY_108	1/E/2881:2882, 1/E/2940:2943	Multiple bulged bases homologous IL_5TBW_109	NA IL_13730.12*
108	IL_7AZY_109	1/E/2889:2891, 1/E/2912:2914	geometric IL_5TBW_110	NA IL_01312.13*
109	IL_7AZY_110	1/E/2891:2892, 1/E/2909:2912	Minor groove platform with intercalation homologous IL_5TBW_111	NA IL_95601.1*
110	IL_7AZY_111	1/E/2918:2920, 1/E/2926:2928	homologous IL_5TBW_112	NA IL_01312.13*
111	IL_7AZY_112	1/E/2960:2961, 1/E/2970:2972	Single bulged A geometric IL_7RQB_101	NA IL_80007.16*
112	IL_7AZY_113	1/E/3004:3007, 1/E/3139:3144	Double sheared homologous IL_5TBW_114	NA IL_09705.7*
113	IL_7AZY_114	1/E/3012:3014, 1/E/3040:3042	homologous IL_5TBW_115	NA IL_01312.13*
114	IL_7AZY_115	1/E/3018:3025, 1/E/3030:3036	8x7 Sarcin-Ricin; G-bulge geometric IL_5TBW_116	NA IL_04346.5*
115	IL_7AZY_116	1/E/3046:3051, 1/E/3091:3095	NA	NA
116	IL_7AZY_117	1/E/3054:3059, 1/E/3084:3088	UAA/GAN related homologous IL_5TBW_118	NA IL_53523.5*
117	IL_7AZY_118	1/E/3063:3064, 1/E/3077:3080	Multiple bulged bases homologous IL_5TBW_119	NA IL_13730.12*
118	IL_7AZY_119	1/E/3103:3107, 1/E/3127:3131	UAA/GAN homologous IL_5TBW_120	NA IL_53523.5*
119	IL_7AZY_120	1/E/3164:3166, 1/E/3284:3286	geometric IL_4WF9_083	NA IL_01312.13*
120	IL_7AZY_121	1/E/3168:3170, 1/E/3280:3282	homologous IL_5TBW_122	NA IL_01312.13*
121	IL_7AZY_122	1/E/3177:3179, 1/E/3210:3211	Single bulged A geometric IL_5TBW_123	NA IL_80007.16*
122	IL_7AZY_123	1/E/3179:3188, 1/E/3204:3210	homologous IL_5TBW_124	NA IL_56867.1*
123	IL_7AZY_124	1/E/3193:3194, 1/E/3197:3199	Single bulged U homologous IL_5TBW_125	NA IL_83039.11*
124	IL_7AZY_125	1/E/3225:3229, 1/E/3258:3260	homologous IL_5TBW_126	NA IL_50789.1*
125	IL_7AZY_126	1/E/3233:3235, 1/E/3252:3254	geometric IL_4M4O_002	NA IL_01312.13*
126	IL_7AZY_127	1/E/3235:3238, 1/E/3249:3252	Tandem non-canonical cWW pairs homologous IL_5TBW_128	NA IL_85877.10*
127	IL_7AZY_128	1/E/3300:3303, 1/E/3311:3314	Tandem non-canonical cWW pairs geometric IL_5TBW_129	NA IL_85877.10*
128	IL_7AZY_129	1/E/3318:3320, 1/E/3387:3388	Single bulged U geometric IL_5J7L_298	NA IL_83039.11*
129	IL_7AZY_130	1/E/3324:3325, 1/E/3381:3383	Single bulged U homologous IL_5TBW_131	NA IL_21340.1*
130	IL_7AZY_131	1/E/3328:3330, 1/E/3373:3378	Isolated non-canonical cWW with bulges homologous IL_5TBW_132	NA IL_55456.1*
131	IL_7AZY_132	1/E/3332:3337, 1/E/3367:3371	homologous IL_5TBW_133	NA IL_47002.1*
132	IL_7AZY_133	1/E/3340:3342, 1/E/3363:3364	Single bulged U geometric IL_5TBW_134	NA IL_83039.11*
133	IL_7AZY_134	1/E/3342:3345, 1/E/3360:3363	tWS-tSW homologous IL_5TBW_135	NA IL_09705.7*
134	IL_7AZY_135	1/E/3349:3350, 1/E/3353:3356	Multiple bulged bases homologous IL_5TBW_136	NA IL_13730.12*
135	IL_7AZY_136	1/F/15:16, 1/F/63:65	NA	NA
136	IL_7AZY_137	1/F/21:27, 1/F/53:58	NA	NA
137	IL_7AZY_138	1/F/28:29, 1/F/49:52	NA	NA
138	IL_7AZY_139	1/F/29:30, 1/F/47:49	NA	NA
139	IL_7AZY_140	1/F/32:36, 1/F/41:45	NA	NA
140	IL_7AZY_141	1/F/72:80, 1/F/100:106	NA	NA
141	IL_7AZY_142	1/F/84:87, 1/F/94:96	NA	NA
142	IL_7AZY_143	1/G/64:66, 1/G/93:96	Isolated non-canonical cWW with bulges geometric IL_5TBW_145	NA IL_55456.1*
143	IL_7AZY_144	1/G/68:69, 1/G/89:91	Single bulged U homologous IL_5TBW_146	NA IL_83039.11*

Problematic loops

#	loop id	Problem	Sequence
1	IL_7AZY_016	missing nts	homologous IL_5TBW_017

Valid loops

#	loop id	location	annotation (mapped to, source)	motif group (similar to)
1	J3_7AZY_001	1/E/113:123, 1/E/149:158, 1/E/263:267	homologous J3_5TBW_001	NA
2	J3_7AZY_002	1/E/369:376, 1/E/403:404, 1/G/19:20	NA	NA
3	J3_7AZY_003	1/E/502:503, 1/E/588:597, 1/E/606:611	homologous J3_5TBW_003	NA
4	J3_7AZY_004	1/E/814:820, 1/E/905:907, 1/E/923:926	homologous J3_5TBW_004	NA
5	J3_7AZY_005	1/E/828:831, 1/E/863:867, 1/E/892:897	homologous J3_5TBW_005	NA
6	J3_7AZY_006	1/E/986:987, 1/E/1062:1066, 1/E/1092:1098	homologous J3_5TBW_006	NA
7	J3_7AZY_007	1/E/1230:1232, 1/E/1256:1262, 1/E/1277:1279	NA	NA
8	J3_7AZY_008	1/E/1479:1485, 1/E/1857:1859, 1/E/1871:1874	homologous J3_5TBW_008	NA
9	J3_7AZY_009	1/E/1488:1491, 1/E/1837:1843, 1/E/1852:1854	homologous J3_5TBW_009	NA
10	J3_7AZY_010	1/E/1526:1531, 1/E/1591:1595, 1/E/1612:1613	homologous J3_5TBW_010	NA
11	J3_7AZY_011	1/E/1631:1632, 1/E/1641:1645, 1/E/1810:1811	NA	NA
12	J3_7AZY_012	1/E/2432:2435, 1/E/2512:2517, 1/E/2590:2597	homologous J3_5TBW_012	NA
13	J3_7AZY_013	1/E/2529:2532, 1/E/2547:2563, 1/E/2578:2581	NA	NA
14	J3_7AZY_014	1/E/2664:2666, 1/E/2690:2692, 1/E/2701:2706	NA	NA
15	J3_7AZY_015	1/E/2886:2889, 1/E/2914:2916, 1/E/2930:2936	homologous J3_5TBW_014	NA
16	J3_7AZY_016	1/E/3298:3300, 1/E/3314:3318, 1/E/3388:3390	homologous J3_5TBW_015	NA
17	J3_7AZY_017	1/F/9:14, 1/F/66:67, 1/F/111:112	NA	NA
18	J3_7AZY_018	1/G/44:45, 1/G/58:64, 1/G/96:100	NA	NA

Problematic loops

No problematic loops

Coloring options: Nucleotide numbers

7AZY Internal, Hairpin and 3-way Junction Loop Motifs

Valid loops

Problematic loops

Valid loops

Problematic loops

Valid loops

Problematic loops