4V54 Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| # | loop id | location | annotation (mapped to, source) | motif group (similar to) |
|---|---|---|---|---|
| 1/AA/12:22 | NA | NA | ||
| 1/AA/83:86 | NA | NA | ||
| 1/AA/158:163 | NA | NA | ||
| 1/AA/186:191 | NA | NA | ||
| 1/AA/259:267 | NA | NA | ||
| 1/AA/296:301 | NA | NA | ||
| 1/AA/320:333 | NA | NA | ||
| 1/AA/342:347 | NA | NA | ||
| 1/AA/379:384 | NA | NA | ||
| 1/AA/419:424 | NA | NA | ||
| 1/AA/462:470 | NA | NA | ||
| 1/AA/522:527 | NA | NA | ||
| 1/AA/617:623 | NA | NA | ||
| 1/AA/689:698 | NA | NA | ||
| 1/AA/726:731 | NA | NA | ||
| 1/AA/786:796 | NA | NA | ||
| 1/AA/840:846 | NA | NA | ||
| 1/AA/862:867 | NA | NA | ||
| 1/AA/897:902 | NA | NA | ||
| 1/AA/963:972 | NA | NA | ||
| 1/AA/1012:1017 | NA | NA | ||
| 1/AA/1028:1033 | NA | NA | ||
| 1/AA/1089:1096 | NA | NA | ||
| 1/AA/1134:1140 | NA | NA | ||
| 1/AA/1165:1171 | NA | NA | ||
| 1/AA/1265:1270 | NA | NA | ||
| 1/AA/1314:1323 | NA | NA | ||
| 1/AA/1356:1366 | NA | NA | ||
| 1/AA/1449:1454 | NA | NA | ||
| 1/AA/1515:1520 | NA | NA | ||
| 1/BA/38:44 | NA | NA | ||
| 1/BA/86:90 | NA | NA | ||
| 1/BB/59:68 | homologous HL_7RQB_001 | NA HL_29414.1* | ||
| 1/BB/87:95 | geometric HL_5J7L_135 | NA HL_17926.5* | ||
| 1/BB/123:128 | homologous HL_7RQB_003 | NA HL_62869.3* | ||
| 1/BB/158:168 | geometric HL_5J7L_138 | NA HL_81820.1* | ||
| 1/BB/194:201 | homologous HL_7RQB_006 | NA HL_23481.5* | ||
| 1/BB/225:230 | homologous HL_7RQB_007 | NA HL_06569.2* | ||
| 1/BB/246:252 | homologous HL_7RQB_008 | NA HL_67216.5* | ||
| 1/BB/305:312 | homologous HL_7RQB_010 | NA HL_68493.6* | ||
| 1/BB/319:323 | homologous HL_7RQB_011 | NA HL_98557.5* | ||
| 1/BB/327:335 | homologous HL_7RQB_012 | NA HL_08002.6* | ||
| 1/BB/382:392 | homologous HL_7RQB_013 | NA HL_91503.3* | ||
| 1/BB/410:417 | homologous HL_7RQB_014 | NA HL_32512.8* | ||
| 1/BB/462:467 | homologous HL_7RQB_015 | NA HL_43074.18* | ||
| 1/BB/487:493 | homologous HL_7RQB_016 | NA HL_43074.18* | ||
| 1/BB/543:550 | homologous HL_7RQB_017 | NA | ||
| 1/BB/566:575 | T-loop with 2 stacked bulged bases geometric HL_5J7L_150 | NA HL_33239.17* | ||
| 1/BB/611:617 | NA | NA | ||
| 1/BB/629:634 | homologous HL_7RQB_020 | NA HL_43074.18* | ||
| 1/BB/641:647 | homologous HL_7RQB_021 | NA HL_02361.6* | ||
| 1/BB/712:719 | homologous HL_7RQB_022 | NA HL_93727.5* | ||
| 1/BB/744:753 | homologous HL_7RQB_023 | NA HL_39334.5* | ||
| 1/BB/779:785 | NA | NA | ||
| 1/BB/826:831 | homologous HL_7RQB_025 | NA HL_15942.5* | ||
| 1/BB/955:962 | homologous HL_7RQB_027 | NA HL_43074.18* | ||
| 1/BB/978:985 | homologous HL_7RQB_028 | NA HL_72451.5* | ||
| 1/BB/1064:1074 | geometric HL_1MMS_001 | NA HL_92304.3* | ||
| 1/BB/1092:1099 | homologous HL_7RQB_030 | NA | ||
| 1/BB/1222:1227 | homologous HL_7RQB_032 | NA HL_43074.18* | ||
| 1/BB/1281:1289 | homologous HL_7RQB_033 | NA HL_33239.17* | ||
| 1/BB/1324:1330 | homologous HL_7RQB_034 | NA HL_86880.5* | ||
| 1/BB/1363:1368 | homologous HL_7RQB_035 | NA HL_43074.18* | ||
| 1/BB/1389:1398 | homologous HL_7RQB_036 | NA HL_78457.4* | ||
| 1/BB/1449:1462 | NA | NA | ||
| 1/BB/1492:1498 | homologous HL_7RQB_038 | NA HL_86880.5* | ||
| 1/BB/1533:1538 | UNCG geometric HL_4LFB_011 | NA HL_79299.11* | ||
| 1/BB/1565:1568 | homologous HL_7RQB_039 | NA HL_69353.7* | ||
| 1/BB/1612:1619 | homologous HL_7RQB_040 | NA HL_66171.3* | ||
| 1/BB/1630:1636 | GNRA with one bulged base geometric HL_5J7L_174 | NA HL_02361.6* | ||
| 1/BB/1691:1696 | homologous HL_7RQB_042 | NA HL_79299.11* | ||
| 1/BB/1752:1756 | homologous HL_7RQB_044 | NA HL_79272.3* | ||
| 1/BB/1777:1787 | homologous HL_7RQB_045 | NA HL_43613.4* | ||
| 1/BB/1806:1811 | homologous HL_7RQB_046 | NA HL_43074.18* | ||
| 1/BB/1868:1873 | Other HL geometric HL_5J7L_180 | NA HL_43074.18* | ||
| 1/BB/1910:1920 | NA | NA | ||
| 1/BB/1949:1957 | homologous HL_7RQB_049 | NA HL_53760.4* | ||
| 1/BB/2027:2036 | homologous HL_7RQB_050 | NA HL_90642.5* | ||
| 1/BB/2142:2149 | NA | NA | ||
| 1/BB/2209:2215 | geometric HL_5J7L_185 | NA HL_16845.5* | ||
| 1/BB/2248:2256 | homologous HL_7RQB_053 | NA | ||
| 1/BB/2264:2276 | homologous HL_7RQB_054 | NA HL_19870.5* | ||
| 1/BB/2303:2313 | homologous HL_7RQB_055 | NA HL_11805.3* | ||
| 1/BB/2324:2331 | homologous HL_7RQB_056 | NA HL_46142.8* | ||
| 1/BB/2356:2361 | Other HL geometric HL_5J7L_190 | NA HL_43074.18* | ||
| 1/BB/2374:2379 | homologous HL_7RQB_058 | NA HL_43074.18* | ||
| 1/BB/2404:2413 | homologous HL_7RQB_059 | NA HL_48376.4* | ||
| 1/BB/2471:2479 | homologous HL_7RQB_060 | NA HL_36421.5* | ||
| 1/BB/2528:2535 | homologous HL_7RQB_061 | NA HL_92681.5* | ||
| 1/BB/2551:2557 | geometric HL_5TBW_063 | NA HL_26055.6* | ||
| 1/BB/2594:2599 | homologous HL_7RQB_063 | NA HL_43074.18* | ||
| 1/BB/2658:2663 | geometric HL_5J7L_179 | NA HL_32527.3* | ||
| 1/BB/2701:2706 | Ribsomal LSU H95 geometric HL_5J7L_198 | NA HL_67719.1* | ||
| 1/BB/2745:2759 | homologous HL_7RQB_066 | NA HL_56677.5* | ||
| 1/BB/2796:2800 | NA | NA | ||
| 1/BB/2819:2827 | homologous HL_7RQB_068 | NA HL_05018.6* | ||
| 1/BB/2856:2861 | homologous HL_7RQB_069 | NA HL_43074.18* | ||
| 1/CA/12:22 | NA | NA | ||
| 1/CA/83:86 | NA | NA | ||
| 1/CA/158:163 | NA | NA | ||
| 1/CA/186:191 | NA | NA | ||
| 1/CA/207:212 | NA | NA | ||
| 1/CA/259:267 | NA | NA | ||
| 1/CA/296:301 | NA | NA | ||
| 1/CA/320:333 | NA | NA | ||
| 1/CA/342:347 | NA | NA | ||
| 1/CA/379:384 | NA | NA | ||
| 1/CA/419:424 | NA | NA | ||
| 1/CA/462:470 | NA | NA | ||
| 1/CA/522:527 | NA | NA | ||
| 1/CA/617:623 | NA | NA | ||
| 1/CA/689:698 | NA | NA | ||
| 1/CA/726:731 | NA | NA | ||
| 1/CA/786:796 | NA | NA | ||
| 1/CA/840:846 | NA | NA | ||
| 1/CA/862:867 | NA | NA | ||
| 1/CA/897:902 | NA | NA | ||
| 1/CA/963:972 | NA | NA | ||
| 1/CA/1012:1017 | NA | NA | ||
| 1/CA/1028:1033 | NA | NA | ||
| 1/CA/1076:1081 | NA | NA | ||
| 1/CA/1089:1096 | NA | NA | ||
| 1/CA/1134:1140 | NA | NA | ||
| 1/CA/1165:1171 | NA | NA | ||
| 1/CA/1265:1270 | NA | NA | ||
| 1/CA/1314:1323 | NA | NA | ||
| 1/CA/1356:1366 | NA | NA | ||
| 1/CA/1449:1454 | NA | NA | ||
| 1/CA/1515:1520 | NA | NA | ||
| 1/DA/38:44 | NA | NA | ||
| 1/DA/86:90 | NA | NA | ||
| 1/DB/59:68 | homologous HL_7RQB_001 | NA HL_29414.1* | ||
| 1/DB/87:95 | geometric HL_5J7L_135 | NA HL_17926.5* | ||
| 1/DB/123:128 | homologous HL_7RQB_003 | NA HL_62869.3* | ||
| 1/DB/137:142 | NA | NA | ||
| 1/DB/158:168 | geometric HL_5J7L_138 | NA HL_81820.1* | ||
| 1/DB/194:201 | geometric HL_5J7L_139 | NA HL_23481.5* | ||
| 1/DB/225:230 | homologous HL_7RQB_007 | NA HL_06569.2* | ||
| 1/DB/246:252 | homologous HL_7RQB_008 | NA HL_67216.5* | ||
| 1/DB/305:312 | homologous HL_7RQB_010 | NA HL_68493.6* | ||
| 1/DB/319:323 | homologous HL_7RQB_011 | NA HL_98557.5* | ||
| 1/DB/327:335 | homologous HL_7RQB_012 | NA HL_08002.6* | ||
| 1/DB/382:392 | homologous HL_7RQB_013 | NA HL_91503.3* | ||
| 1/DB/410:417 | homologous HL_7RQB_014 | NA HL_32512.8* | ||
| 1/DB/462:467 | homologous HL_7RQB_015 | NA HL_43074.18* | ||
| 1/DB/487:493 | homologous HL_7RQB_016 | NA HL_43074.18* | ||
| 1/DB/543:550 | NA | NA | ||
| 1/DB/566:575 | homologous HL_7RQB_018 | NA HL_33239.17* | ||
| 1/DB/611:617 | NA | NA | ||
| 1/DB/629:634 | homologous HL_7RQB_020 | NA HL_43074.18* | ||
| 1/DB/641:647 | homologous HL_7RQB_021 | NA HL_02361.6* | ||
| 1/DB/712:719 | homologous HL_7RQB_022 | NA HL_93727.5* | ||
| 1/DB/744:753 | homologous HL_7RQB_023 | NA HL_39334.5* | ||
| 1/DB/779:785 | NA | NA | ||
| 1/DB/826:831 | homologous HL_7RQB_025 | NA HL_15942.5* | ||
| 1/DB/955:962 | homologous HL_7RQB_027 | NA HL_43074.18* | ||
| 1/DB/978:985 | homologous HL_7RQB_028 | NA HL_72451.5* | ||
| 1/DB/1064:1074 | geometric HL_1MMS_001 | NA HL_92304.3* | ||
| 1/DB/1092:1099 | homologous HL_7RQB_030 | NA | ||
| 1/DB/1172:1177 | geometric HL_5M3H_001 | NA HL_35894.3* | ||
| 1/DB/1222:1227 | homologous HL_7RQB_032 | NA HL_43074.18* | ||
| 1/DB/1281:1289 | homologous HL_7RQB_033 | NA HL_33239.17* | ||
| 1/DB/1324:1330 | homologous HL_7RQB_034 | NA HL_86880.5* | ||
| 1/DB/1363:1368 | homologous HL_7RQB_035 | NA HL_43074.18* | ||
| 1/DB/1389:1398 | homologous HL_7RQB_036 | NA HL_78457.4* | ||
| 1/DB/1449:1462 | NA | NA | ||
| 1/DB/1492:1498 | homologous HL_7RQB_038 | NA HL_86880.5* | ||
| 1/DB/1533:1538 | UNCG geometric HL_4LFB_011 | NA HL_79299.11* | ||
| 1/DB/1565:1568 | homologous HL_7RQB_039 | NA HL_69353.7* | ||
| 1/DB/1612:1619 | homologous HL_7RQB_040 | NA HL_66171.3* | ||
| 1/DB/1630:1636 | GNRA with one bulged base geometric HL_5J7L_174 | NA HL_02361.6* | ||
| 1/DB/1691:1696 | homologous HL_7RQB_042 | NA HL_79299.11* | ||
| 1/DB/1752:1756 | homologous HL_7RQB_044 | NA HL_79272.3* | ||
| 1/DB/1777:1787 | homologous HL_7RQB_045 | NA HL_43613.4* | ||
| 1/DB/1806:1811 | homologous HL_7RQB_046 | NA HL_43074.18* | ||
| 1/DB/1868:1873 | Other HL geometric HL_5J7L_180 | NA HL_43074.18* | ||
| 1/DB/1910:1920 | NA | NA | ||
| 1/DB/1949:1957 | homologous HL_7RQB_049 | NA HL_53760.4* | ||
| 1/DB/2027:2036 | homologous HL_7RQB_050 | NA HL_90642.5* | ||
| 1/DB/2142:2149 | NA | NA | ||
| 1/DB/2209:2215 | geometric HL_5J7L_185 | NA HL_16845.5* | ||
| 1/DB/2248:2256 | homologous HL_7RQB_053 | NA | ||
| 1/DB/2264:2276 | homologous HL_7RQB_054 | NA HL_19870.5* | ||
| 1/DB/2303:2313 | homologous HL_7RQB_055 | NA HL_11805.3* | ||
| 1/DB/2324:2331 | homologous HL_7RQB_056 | NA HL_46142.8* | ||
| 1/DB/2356:2361 | Other HL geometric HL_5J7L_190 | NA HL_43074.18* | ||
| 1/DB/2374:2379 | homologous HL_7RQB_058 | NA HL_43074.18* | ||
| 1/DB/2404:2413 | homologous HL_7RQB_059 | NA HL_48376.4* | ||
| 1/DB/2471:2479 | homologous HL_7RQB_060 | NA HL_36421.5* | ||
| 1/DB/2528:2535 | homologous HL_7RQB_061 | NA HL_92681.5* | ||
| 1/DB/2551:2557 | geometric HL_5TBW_063 | NA HL_26055.6* | ||
| 1/DB/2594:2599 | homologous HL_7RQB_063 | NA HL_43074.18* | ||
| 1/DB/2658:2663 | homologous HL_7RQB_064 | NA HL_43074.18* | ||
| 1/DB/2701:2706 | Ribsomal LSU H95 geometric HL_5J7L_198 | NA HL_67719.1* | ||
| 1/DB/2745:2759 | homologous HL_7RQB_066 | NA HL_56677.5* | ||
| 1/DB/2796:2800 | NA | NA | ||
| 1/DB/2819:2827 | homologous HL_7RQB_068 | NA HL_05018.6* | ||
| 1/DB/2856:2861 | homologous HL_7RQB_069 | NA HL_43074.18* |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4V54_005 | NA | ||
| HL_4V54_024 | NA | ||
| HL_4V54_038 | NA | ||
| HL_4V54_059 | NA | ||
| HL_4V54_064 | NA | ||
| HL_4V54_077 | NA | ||
| HL_4V54_162 | NA | ||
| HL_4V54_180 | NA |
Valid loops
| # | loop id | location | annotation (mapped to, source) | motif group (similar to) |
|---|---|---|---|---|
| 1/AA/30:32, 1/AA/552:553 | NA | NA | ||
| 1/AA/44:45, 1/AA/396:398 | NA | NA | ||
| 1/AA/47:52, 1/AA/359:361 | NA | NA | ||
| 1/AA/54:56, 1/AA/356:357 | NA | NA | ||
| 1/AA/63:66, 1/AA/103:104 | NA | NA | ||
| 1/AA/67:69, 1/AA/99:102 | NA | NA | ||
| 1/AA/70:73, 1/AA/97:98 | NA | NA | ||
| 1/AA/75:76, 1/AA/93:95 | NA | NA | ||
| 1/AA/128:131, 1/AA/231:233 | NA | NA | ||
| 1/AA/132:136, 1/AA/227:230 | NA | NA | ||
| 1/AA/144:146, 1/AA/176:178 | NA | NA | ||
| 1/AA/147:153, 1/AA/168:175 | NA | NA | ||
| 1/AA/203:206, 1/AA/213:214 | NA | NA | ||
| 1/AA/242:247, 1/AA/277:284 | NA | NA | ||
| 1/AA/249:252, 1/AA/274:275 | NA | NA | ||
| 1/AA/292:293, 1/AA/304:308 | NA | NA | ||
| 1/AA/367:369, 1/AA/392:393 | NA | NA | ||
| 1/AA/371:375, 1/AA/389:390 | NA | NA | ||
| 1/AA/375:376, 1/AA/387:389 | NA | NA | ||
| 1/AA/409:416, 1/AA/427:433 | NA | NA | ||
| 1/AA/440:442, 1/AA/492:497 | NA | NA | ||
| 1/AA/446:450, 1/AA/483:488 | NA | NA | ||
| 1/AA/450:454, 1/AA/479:483 | NA | NA | ||
| 1/AA/454:455, 1/AA/477:479 | NA | NA | ||
| 1/AA/458:459, 1/AA/472:474 | NA | NA | ||
| 1/AA/460:462, 1/AA/470:471 | NA | NA | ||
| 1/AA/504:511, 1/AA/540:541 | NA | NA | ||
| 1/AA/515:521, 1/AA/528:536 | NA | NA | ||
| 1/AA/569:575, 1/AA/880:881 | NA | NA | ||
| 1/AA/580:584, 1/AA/757:761 | NA | NA | ||
| 1/AA/594:596, 1/AA/644:645 | NA | NA | ||
| 1/AA/597:598, 1/AA/640:643 | NA | NA | ||
| 1/AA/605:612, 1/AA/628:633 | NA | NA | ||
| 1/AA/654:655, 1/AA/751:754 | NA | NA | ||
| 1/AA/658:659, 1/AA/746:748 | NA | NA | ||
| 1/AA/662:666, 1/AA/740:743 | NA | NA | ||
| 1/AA/673:678, 1/AA/712:717 | NA | NA | ||
| 1/AA/684:688, 1/AA/699:706 | NA | NA | ||
| 1/AA/774:778, 1/AA/804:805 | NA | NA | ||
| 1/AA/779:783, 1/AA/799:803 | NA | NA | ||
| 1/AA/887:894, 1/AA/905:910 | NA | NA | ||
| 1/AA/922:923, 1/AA/1393:1395 | NA | NA | ||
| 1/AA/925:927, 1/AA/1390:1391 | NA | NA | ||
| 1/AA/933:935, 1/AA/1380:1384 | NA | NA | ||
| 1/AA/953:954, 1/AA/1226:1228 | NA | NA | ||
| 1/AA/993:997, 1/AA/1044:1045 | NA | NA | ||
| 1/AA/998:999, 1/AA/1041:1043 | NA | NA | ||
| 1/AA/1048:1050, 1/AA/1208:1209 | NA | NA | ||
| 1/AA/1052:1056, 1/AA/1204:1206 | NA | NA | ||
| 1/AA/1057:1058, 1/AA/1199:1203 | NA | NA | ||
| 1/AA/1060:1061, 1/AA/1195:1197 | NA | NA | ||
| 1/AA/1061:1063, 1/AA/1193:1195 | NA | NA | ||
| 1/AA/1124:1128, 1/AA/1144:1149 | NA | NA | ||
| 1/AA/1129:1132, 1/AA/1142:1143 | NA | NA | ||
| 1/AA/1158:1161, 1/AA/1175:1181 | NA | NA | ||
| 1/AA/1247:1253, 1/AA/1284:1290 | NA | NA | ||
| 1/AA/1255:1258, 1/AA/1277:1282 | NA | NA | ||
| 1/AA/1259:1263, 1/AA/1272:1276 | NA | NA | ||
| 1/AA/1303:1308, 1/AA/1329:1334 | NA | NA | ||
| 1/AA/1399:1401, 1/AA/1501:1504 | NA | NA | ||
| 1/AA/1401:1404, 1/AA/1497:1501 | NA | NA | ||
| 1/AA/1405:1407, 1/AA/1494:1496 | NA | NA | ||
| 1/AA/1407:1409, 1/AA/1491:1494 | NA | NA | ||
| 1/AA/1412:1414, 1/AA/1486:1488 | NA | NA | ||
| 1/AA/1416:1419, 1/AA/1481:1484 | NA | NA | ||
| 1/AA/1430:1435, 1/AA/1466:1470 | NA | NA | ||
| 1/AA/1440:1442, 1/AA/1460:1461 | NA | NA | ||
| 1/AA/1445:1448, 1/AA/1455:1457 | NA | NA | ||
| 1/BA/17:18, 1/BA/65:67 | NA | NA | ||
| 1/BA/23:28, 1/BA/56:60 | NA | NA | ||
| 1/BA/30:31, 1/BA/51:54 | NA | NA | ||
| 1/BA/34:38, 1/BA/44:48 | NA | NA | ||
| 1/BA/71:79, 1/BA/97:105 | NA | NA | ||
| 1/BB/24:30, 1/BB/510:516 | Triple sheared with non-canonical cWW geometric IL_5J7L_245 | NA IL_66414.5* | ||
| 1/BB/36:37, 1/BB/442:444 | Single bulged A homologous IL_7RQB_002 | NA IL_80007.16* | ||
| 1/BB/43:44, 1/BB/434:436 | Minor groove platform homologous IL_7RQB_003 | NA IL_06437.11* | ||
| 1/BB/81:85, 1/BB/97:105 | NA | NA | ||
| 1/BB/183:184, 1/BB/212:214 | Single stack bend homologous IL_7RQB_005 | NA IL_04038.4* | ||
| 1/BB/188:194, 1/BB/201:208 | 8x7 Sarcin-Ricin; G-bulge geometric IL_5J7L_250 | NA IL_04346.5* | ||
| 1/BB/239:245, 1/BB/253:258 | 7x6 Sarcin-Ricin; G-bulge homologous IL_7RQB_007 | NA IL_35110.5* | ||
| 1/BB/269:271, 1/BB/366:370 | geometric IL_5J7L_252 | NA IL_47972.1* | ||
| 1/BB/274:281, 1/BB/359:363 | geometric IL_5J7L_253 | NA IL_77870.1* | ||
| 1/BB/293:295, 1/BB/343:347 | homologous IL_7RQB_013 | NA IL_69440.1* | ||
| 1/BB/481:484, 1/BB/496:509 | homologous IL_7RQB_014 | NA IL_60992.5* | ||
| 1/BB/536:539, 1/BB/554:557 | Double sheared geometric IL_5J7L_256 | NA IL_09705.7* | ||
| 1/BB/564:566, 1/BB/575:577 | homologous IL_7RQB_015 | NA IL_01312.13* | ||
| 1/BB/606:610, 1/BB/618:622 | AAA cross-strand stack homologous IL_7RQB_016 | NA IL_56467.6* | ||
| 1/BB/672:674, 1/BB/806:808 | homologous IL_7RQB_017 | NA IL_01312.13* | ||
| 1/BB/674:678, 1/BB/799:806 | tHW-tHW cross-strand stack geometric IL_5J7L_260 | NA IL_17470.5* | ||
| 1/BB/697:698, 1/BB/763:765 | Single bulged A geometric IL_5J7L_261 | NA IL_80007.16* | ||
| 1/BB/702:703, 1/BB/728:730 | Single bulged G homologous IL_7RQB_020 | NA IL_59137.10* | ||
| 1/BB/703:707, 1/BB/724:728 | Triple sheared geometric IL_5J7L_263 | NA IL_56467.6* | ||
| 1/BB/738:740, 1/BB/757:758 | Major groove platform geometric IL_5J7L_264 | NA IL_80663.10* | ||
| 1/BB/775:777, 1/BB/787:791 | Multiple bulged bases geometric IL_5J7L_265 | NA IL_90991.5* | ||
| 1/BB/837:838, 1/BB/940:942 | Single stack bend homologous IL_7RQB_024 | NA IL_04038.4* | ||
| 1/BB/844:848, 1/BB/930:934 | NA | NA | ||
| 1/BB/850:851, 1/BB/926:928 | Single stack bend geometric IL_5J7L_269 | NA IL_04038.4* | ||
| 1/BB/856:858, 1/BB/919:921 | geometric IL_4V88_472 | NA IL_01312.13* | ||
| 1/BB/858:862, 1/BB/915:919 | 5x5 Sarcin-Ricin with intercalated A; G-bulge geometric IL_4V9F_033 | NA IL_83354.1* | ||
| 1/BB/862:863, 1/BB/913:915 | Minor groove platform homologous IL_7RQB_028 | NA IL_06437.11* | ||
| 1/BB/864:868, 1/BB/909:912 | C-loop homologous IL_7RQB_029 | NA IL_63596.4* | ||
| 1/BB/870:872, 1/BB/905:907 | Isolated cWS basepair homologous IL_7RQB_030 | NA IL_67621.5* | ||
| 1/BB/994:996, 1/BB/1159:1160 | Single bulged C homologous IL_7RQB_035 | NA IL_61258.10* | ||
| 1/BB/998:1002, 1/BB/1153:1157 | UAA/GAN homologous IL_7RQB_036 | NA IL_53523.5* | ||
| 1/BB/1004:1011, 1/BB/1150:1151 | SSU/LSU pseudoknot geometric IL_5J7L_278 | NA IL_15861.6* | ||
| 1/BB/1011:1013, 1/BB/1149:1150 | Single bulged U homologous IL_7RQB_038 | NA IL_83039.11* | ||
| 1/BB/1018:1024, 1/BB/1140:1144 | geometric IL_4WF9_039 | NA IL_57188.3* | ||
| 1/BB/1024:1030, 1/BB/1124:1140 | geometric IL_5J7L_281 | NA IL_22615.1* | ||
| 1/BB/1031:1034, 1/BB/1121:1123 | Isolated non-canonical cWW with bulges homologous IL_7RQB_041 | NA IL_55456.1* | ||
| 1/BB/1038:1041, 1/BB/1114:1117 | Tandem non-canonical cWW pairs geometric IL_5J7L_283 | NA IL_85877.10* | ||
| 1/BB/1043:1051, 1/BB/1108:1112 | Kink-turn homologous IL_7RQB_042 | NA IL_90538.3* | ||
| 1/BB/1059:1062, 1/BB/1076:1079 | geometric IL_1MMS_001 | NA IL_23544.2* | ||
| 1/BB/1087:1090, 1/BB/1101:1102 | Major groove platform geometric IL_4V9F_044 | NA IL_80663.10* | ||
| 1/BB/1196:1198, 1/BB/1247:1250 | Isolated cWS basepair homologous IL_7RQB_045 | NA IL_67621.5* | ||
| 1/BB/1202:1206, 1/BB/1240:1243 | geometric IL_5J7L_287 | NA IL_91920.1* | ||
| 1/BB/1208:1215, 1/BB/1234:1238 | Kink-turn homologous IL_7RQB_047 | NA IL_29549.9* | ||
| 1/BB/1262:1269, 1/BB/2011:2017 | 8x7 Sarcin-Ricin; G-bulge homologous IL_7RQB_049 | NA IL_04346.5* | ||
| 1/BB/1310:1313, 1/BB/1603:1604 | Major groove platform; stack outside cWW homologous IL_7RQB_050 | NA IL_70995.6* | ||
| 1/BB/1319:1323, 1/BB/1331:1333 | C-loop homologous IL_7RQB_051 | NA IL_63596.4* | ||
| 1/BB/1351:1355, 1/BB/1376:1380 | UAA/GAN homologous IL_7RQB_052 | NA IL_53523.5* | ||
| 1/BB/1357:1361, 1/BB/1370:1374 | tSH-tHW-tHS homologous IL_7RQB_053 | NA IL_39521.5* | ||
| 1/BB/1415:1416, 1/BB/1582:1587 | geometric IL_5J7L_294 | NA IL_90348.1* | ||
| 1/BB/1417:1421, 1/BB/1577:1581 | UAA/GAN homologous IL_7RQB_055 | NA IL_53523.5* | ||
| 1/BB/1432:1435, 1/BB/1557:1561 | Tandem non-canonical cWW pairs geometric IL_5J7L_296 | NA IL_85877.10* | ||
| 1/BB/1437:1440, 1/BB/1551:1555 | NA | NA | ||
| 1/BB/1468:1471, 1/BB/1520:1524 | geometric IL_5J7L_299 | NA IL_68574.2* | ||
| 1/BB/1474:1478, 1/BB/1513:1517 | tSH-tHW-tHS geometric IL_5J7L_300 | NA IL_39521.5* | ||
| 1/BB/1481:1482, 1/BB/1507:1510 | NA | NA | ||
| 1/BB/1489:1491, 1/BB/1499:1500 | Single bulged A homologous IL_7RQB_062 | NA IL_40508.4* | ||
| 1/BB/1526:1529, 1/BB/1542:1546 | UAA/GAN variation geometric IL_5J7L_303 | NA IL_81389.2* | ||
| 1/BB/1651:1656, 1/BB/2004:2006 | homologous IL_7RQB_064 | NA IL_12566.2* | ||
| 1/BB/1663:1665, 1/BB/1995:1997 | Isolated tWW turn homologous IL_7RQB_065 | NA IL_54997.5* | ||
| 1/BB/1666:1669, 1/BB/1993:1994 | Major groove platform; stack outside cWW homologous IL_7RQB_066 | NA IL_80663.10* | ||
| 1/BB/1669:1674, 1/BB/1990:1993 | Intercalated tWH geometric IL_5J7L_307 | NA IL_01312.13* | ||
| 1/BB/1686:1691, 1/BB/1696:1702 | tSH-tSH-tHH-tHS geometric IL_5J7L_308 | NA IL_66584.5* | ||
| 1/BB/1712:1718, 1/BB/1742:1746 | 6x5 Sarcin-Ricin; G-bulge geometric IL_5J7L_309 | NA IL_88269.2* | ||
| 1/BB/1720:1724, 1/BB/1736:1740 | Triple sheared geometric IL_5J7L_310 | NA IL_56467.6* | ||
| 1/BB/1727:1728, 1/BB/1731:1733 | Single bulged C geometric IL_5J7L_311 | NA IL_61258.10* | ||
| 1/BB/1770:1771, 1/BB/1980:1982 | Single bulged A homologous IL_7RQB_069 | NA IL_80007.16* | ||
| 1/BB/1798:1804, 1/BB/1813:1821 | Kink-turn related homologous IL_7RQB_070 | NA IL_17069.3* | ||
| 1/BB/1837:1840, 1/BB/1902:1903 | Major groove outside cWW, minor groove, intercalation pocket homologous IL_7RQB_071 | NA IL_31836.1* | ||
| 1/BB/1841:1842, 1/BB/1898:1901 | Major groove outside cWW, minor groove, intercalation pocket geometric IL_5J7L_315 | NA IL_13730.12* | ||
| 1/BB/1846:1849, 1/BB/1893:1894 | Minor groove platform homologous IL_7RQB_073 | NA IL_06437.11* | ||
| 1/BB/1864:1867, 1/BB/1874:1878 | UAA/GAN related geometric IL_5J7L_317 | NA IL_81389.2* | ||
| 1/BB/1933:1934, 1/BB/1964:1967 | Multiple bulged bases homologous IL_7RQB_076 | NA IL_69632.1* | ||
| 1/BB/1934:1945, 1/BB/1961:1964 | geometric IL_7A0S_072 | NA IL_07097.1* | ||
| 1/BB/2050:2052, 1/BB/2617:2618 | Major groove platform homologous IL_7RQB_078 | NA IL_80663.10* | ||
| 1/BB/2054:2056, 1/BB/2612:2615 | NA | NA | ||
| 1/BB/2067:2069, 1/BB/2442:2443 | Single bulged U homologous IL_7RQB_080 | NA IL_83039.11* | ||
| 1/BB/2070:2071, 1/BB/2438:2441 | Minor groove platform homologous IL_7RQB_081 | NA IL_06437.11* | ||
| 1/BB/2081:2083, 1/BB/2236:2239 | Isolated tHS basepair with bulges homologous IL_7RQB_082 | NA IL_38958.6* | ||
| 1/BB/2085:2087, 1/BB/2232:2234 | homologous IL_7RQB_083 | NA IL_01312.13* | ||
| 1/BB/2103:2105, 1/BB/2184:2186 | Stack and bulge geometric IL_2ET8_001 | NA IL_04038.4* | ||
| 1/BB/2108:2110, 1/BB/2179:2181 | NA | NA | ||
| 1/BB/2202:2204, 1/BB/2220:2221 | Single bulged U geometric IL_5J7L_331 | NA IL_21340.1* | ||
| 1/BB/2297:2299, 1/BB/2317:2321 | NA | NA | ||
| 1/BB/2350:2353, 1/BB/2364:2367 | Double sheared homologous IL_7RQB_089 | NA IL_09705.7* | ||
| 1/BB/2401:2403, 1/BB/2414:2415 | NA | NA | ||
| 1/BB/2453:2454, 1/BB/2498:2500 | Single stack bend geometric IL_4WF9_089 | NA IL_04038.4* | ||
| 1/BB/2454:2455, 1/BB/2496:2498 | Major groove platform homologous IL_7RQB_092 | NA IL_80663.10* | ||
| 1/BB/2457:2459, 1/BB/2493:2494 | Major groove platform geometric IL_5TBW_104 | NA IL_80663.10* | ||
| 1/BB/2459:2461, 1/BB/2489:2493 | Major groove minor groove platform with extra cWW geometric IL_5J7L_337 | NA IL_96042.4* | ||
| 1/BB/2466:2470, 1/BB/2480:2484 | Triple sheared homologous IL_7RQB_095 | NA IL_56467.6* | ||
| 1/BB/2507:2508, 1/BB/2580:2582 | Major groove platform homologous IL_7RQB_096 | NA IL_02060.4* | ||
| 1/BB/2510:2512, 1/BB/2574:2578 | Isolated non-canonical cWW with bulges homologous IL_7RQB_097 | NA IL_01312.13* | ||
| 1/BB/2512:2513, 1/BB/2571:2574 | geometric IL_5J7L_341 | NA IL_44093.1* | ||
| 1/BB/2522:2523, 1/BB/2540:2543 | Minor groove platform with intercalation homologous IL_7RQB_099 | NA IL_95601.1* | ||
| 1/BB/2591:2592, 1/BB/2601:2603 | Single bulged A homologous IL_7RQB_101 | NA IL_80007.16* | ||
| 1/BB/2636:2640, 1/BB/2774:2782 | tSH-tHS-tHW homologous IL_7RQB_102 | NA IL_34907.2* | ||
| 1/BB/2652:2658, 1/BB/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge homologous IL_7RQB_103 | NA IL_35110.5* | ||
| 1/BB/2680:2684, 1/BB/2725:2727 | C-loop homologous IL_7RQB_104 |