4V54 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4V54_001 | 1/AA/12:22 | No text annotation | homologous HL_5J7L_001 HL_89881.5 | |
| HL_4V54_002 | 1/AA/83:86 | No text annotation | ||
| HL_4V54_003 | 1/AA/158:163 | GNRA | homologous HL_5J7L_003 HL_37824.7 | |
| HL_4V54_004 | 1/AA/186:191 | GNRA | homologous HL_5J7L_004 HL_37824.7 | |
| HL_4V54_006 | 1/AA/259:267 | GNRA related | homologous HL_5J7L_006 HL_84299.4 | |
| HL_4V54_007 | 1/AA/296:301 | GNRA | homologous HL_5J7L_007 HL_37824.7 | |
| HL_4V54_008 | 1/AA/320:333 | No text annotation | homologous HL_5J7L_008 HL_81205.3 | |
| HL_4V54_009 | 1/AA/342:347 | UNCG | homologous HL_4LFB_009 HL_34617.5 | |
| HL_4V54_010 | 1/AA/379:384 | GNRA | homologous HL_5J7L_010 HL_37824.7 | |
| HL_4V54_011 | 1/AA/419:424 | UNCG | homologous HL_4LFB_011 HL_34617.5 | |
| HL_4V54_012 | 1/AA/462:470 | No text annotation | geometric HL_6DTD_001 HL_48417.5 | |
| HL_4V54_013 | 1/AA/522:527 | No text annotation | geometric HL_4WF9_003 HL_75660.5 | |
| HL_4V54_014 | 1/AA/617:623 | No text annotation | homologous HL_5J7L_014 HL_10453.3 | |
| HL_4V54_015 | 1/AA/689:698 | No text annotation | homologous HL_5J7L_015 HL_75293.5 | |
| HL_4V54_016 | 1/AA/726:731 | GNRA | homologous HL_5J7L_016 HL_37824.7 | |
| HL_4V54_017 | 1/AA/786:796 | No text annotation | homologous HL_5J7L_017 HL_75293.5 | |
| HL_4V54_018 | 1/AA/840:846 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_4V54_019 | 1/AA/862:867 | GNRA | homologous HL_4LFB_019 HL_37824.7 | |
| HL_4V54_020 | 1/AA/897:902 | GNRA | homologous HL_4LFB_020 HL_37824.7 | |
| HL_4V54_021 | 1/AA/963:972 | No text annotation | homologous HL_5J7L_021 HL_50779.4 | |
| HL_4V54_022 | 1/AA/1012:1017 | GNRA | homologous HL_4LFB_022 HL_37824.7 | |
| HL_4V54_023 | 1/AA/1028:1033 | No text annotation | geometric HL_2Y8W_001 HL_81100.2 | |
| HL_4V54_025 | 1/AA/1089:1096 | T-loop related | homologous HL_5J7L_024 HL_77436.5 | |
| HL_4V54_026 | 1/AA/1134:1140 | No text annotation | homologous HL_6CZR_097 NA | |
| HL_4V54_027 | 1/AA/1165:1171 | GNRA | homologous HL_4LFB_027 HL_37824.7 | |
| HL_4V54_028 | 1/AA/1265:1270 | GNRA | homologous HL_4LFB_028 HL_37824.7 | |
| HL_4V54_029 | 1/AA/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_02887.3 | |
| HL_4V54_030 | 1/AA/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_06226.4 | |
| HL_4V54_031 | 1/AA/1449:1454 | UNCG | homologous HL_4LFB_031 HL_34617.5 | |
| HL_4V54_032 | 1/AA/1515:1520 | GNRA | homologous HL_4LFB_032 HL_37824.7 | |
| HL_4V54_207 | 1/BA/34:48 | No text annotation | homologous HL_5J7L_215 HL_97756.2 | |
| HL_4V54_033 | 1/BA/38:44 | No text annotation | geometric HL_4V9F_071 HL_47787.2 | |
| HL_4V54_034 | 1/BA/86:90 | Mini UNCG | homologous HL_5J7L_204 HL_48778.2 | |
| HL_4V54_035 | 1/BB/59:68 | No text annotation | homologous HL_7RQB_001 NA | |
| HL_4V54_036 | 1/BB/87:95 | No text annotation | homologous HL_5J7L_135 HL_80241.1 | |
| HL_4V54_037 | 1/BB/123:128 | No text annotation | homologous HL_4WF9_003 HL_75660.5 | |
| HL_4V54_039 | 1/BB/158:168 | No text annotation | homologous HL_5J7L_138 HL_68257.1 | |
| HL_4V54_040 | 1/BB/194:201 | No text annotation | homologous HL_5J7L_139 HL_30068.2 | |
| HL_4V54_041 | 1/BB/225:230 | No text annotation | homologous HL_5J7L_140 HL_62934.1 | |
| HL_4V54_042 | 1/BB/246:252 | No text annotation | homologous HL_5J7L_141 HL_37369.2 | |
| HL_4V54_043 | 1/BB/305:312 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_142 HL_01609.3 | |
| HL_4V54_044 | 1/BB/319:323 | No text annotation | homologous HL_7A0S_011 HL_75660.5 | |
| HL_4V54_045 | 1/BB/327:335 | T-loop with unstacked turn | homologous HL_5J7L_144 HL_27670.2 | |
| HL_4V54_046 | 1/BB/382:392 | No text annotation | homologous HL_5J7L_145 HL_91503.7 | |
| HL_4V54_047 | 1/BB/410:417 | Pseudoknot geometry | homologous HL_5J7L_146 HL_30680.3 | |
| HL_4V54_048 | 1/BB/462:467 | GNRA | homologous HL_7RQB_015 NA | |
| HL_4V54_049 | 1/BB/487:493 | GNRA | homologous HL_5J7L_148 HL_37824.7 | |
| HL_4V54_050 | 1/BB/543:550 | No text annotation | homologous HL_7RQB_017 NA | |
| HL_4V54_051 | 1/BB/566:575 | T-loop with 2 stacked bulged bases | geometric HL_5J7L_150 HL_28252.6 | |
| HL_4V54_052 | 1/BB/611:617 | No text annotation | homologous HL_5J7L_151 HL_80922.2 | |
| HL_4V54_053 | 1/BB/629:634 | GNRA | homologous HL_5J7L_152 HL_37824.7 | |
| HL_4V54_054 | 1/BB/641:647 | No text annotation | homologous HL_7RQB_021 NA | |
| HL_4V54_055 | 1/BB/712:719 | GNRA wlth tandem sheared | homologous HL_5J7L_154 HL_81538.2 | |
| HL_4V54_056 | 1/BB/744:753 | No text annotation | homologous HL_4WF9_023 HL_88205.2 | |
| HL_4V54_057 | 1/BB/779:785 | No text annotation | homologous HL_7A0S_023 HL_53890.2 | |
| HL_4V54_058 | 1/BB/826:831 | No text annotation | homologous HL_7RQB_025 NA | |
| HL_4V54_060 | 1/BB/955:962 | GNRA | homologous HL_4WF9_027 HL_37824.7 | |
| HL_4V54_061 | 1/BB/978:985 | No text annotation | homologous HL_7A0S_027 HL_42998.2 | |
| HL_4V54_062 | 1/BB/1064:1074 | No text annotation | homologous HL_6PRV_001 HL_19210.3 | |
| HL_4V54_063 | 1/BB/1092:1099 | GNRA wlth tandem sheared | homologous HL_6PRV_002 HL_81538.2 | |
| HL_4V54_065 | 1/BB/1222:1227 | GNRA | homologous HL_5J7L_164 HL_37824.7 | |
| HL_4V54_066 | 1/BB/1281:1289 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_165 HL_28252.6 | |
| HL_4V54_067 | 1/BB/1324:1330 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_166 HL_57176.2 | |
| HL_4V54_068 | 1/BB/1363:1368 | GNRA | homologous HL_5J7L_167 HL_37824.7 | |
| HL_4V54_069 | 1/BB/1389:1398 | No text annotation | homologous HL_5J7L_168 HL_81545.2 | |
| HL_4V54_070 | 1/BB/1449:1462 | No text annotation | ||
| HL_4V54_071 | 1/BB/1492:1498 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_170 HL_57176.2 | |
| HL_4V54_072 | 1/BB/1533:1538 | UNCG | homologous HL_5J7L_171 HL_34617.5 | |
| HL_4V54_073 | 1/BB/1565:1568 | Mini UNCG | homologous HL_5J7L_172 HL_48778.2 | |
| HL_4V54_074 | 1/BB/1612:1619 | No text annotation | homologous HL_7RQB_040 NA | |
| HL_4V54_075 | 1/BB/1630:1636 | GNRA | homologous HL_5J7L_174 HL_37824.7 | |
| HL_4V54_076 | 1/BB/1691:1696 | UNCG | homologous HL_5J7L_175 HL_34617.5 | |
| HL_4V54_078 | 1/BB/1752:1756 | No text annotation | homologous HL_7RQB_044 NA | |
| HL_4V54_079 | 1/BB/1777:1787 | No text annotation | homologous HL_5J7L_178 HL_01962.2 | |
| HL_4V54_080 | 1/BB/1806:1811 | GNRA related | homologous HL_5J7L_179 HL_04783.2 | |
| HL_4V54_081 | 1/BB/1868:1873 | GNRA variation | homologous HL_5J7L_180 HL_37824.7 | |
| HL_4V54_082 | 1/BB/1910:1920 | No text annotation | homologous HL_9DFE_046 HL_25847.2 | |
| HL_4V54_083 | 1/BB/1949:1957 | No text annotation | homologous HL_7RQB_049 NA | |
| HL_4V54_084 | 1/BB/2027:2036 | No text annotation | homologous HL_4WF9_047 HL_61996.2 | |
| HL_4V54_085 | 1/BB/2142:2149 | No text annotation | homologous HL_5J7L_184 NA | |
| HL_4V54_086 | 1/BB/2209:2215 | No text annotation | homologous HL_5J7L_185 HL_49922.4 | |
| HL_4V54_087 | 1/BB/2248:2256 | No text annotation | homologous HL_5J7L_186 HL_85367.2 | |
| HL_4V54_088 | 1/BB/2264:2276 | No text annotation | homologous HL_5J7L_187 HL_91939.2 | |
| HL_4V54_209 | 1/BB/2304:2312 | No text annotation | homologous HL_5J7L_219 HL_50860.2 | |
| HL_4V54_090 | 1/BB/2324:2331 | Pseudoknot geometry | homologous HL_5J7L_189 HL_93324.4 | |
| HL_4V54_091 | 1/BB/2356:2361 | GNRA | homologous HL_5J7L_190 HL_37824.7 | |
| HL_4V54_092 | 1/BB/2374:2379 | GNRA | homologous HL_7RQB_058 NA | |
| HL_4V54_093 | 1/BB/2404:2413 | No text annotation | homologous HL_5J7L_192 HL_53454.2 | |
| HL_4V54_094 | 1/BB/2471:2479 | No text annotation | homologous HL_5J7L_193 HL_32735.2 | |
| HL_4V54_095 | 1/BB/2528:2535 | No text annotation | homologous HL_5J7L_194 HL_31585.3 | |
| HL_4V54_096 | 1/BB/2551:2557 | No text annotation | homologous HL_4WF9_058 HL_30068.2 | |
| HL_4V54_097 | 1/BB/2594:2599 | GNRA | homologous HL_5J7L_196 HL_37824.7 | |
| HL_4V54_098 | 1/BB/2658:2663 | GNRA related | geometric HL_5J7L_179 HL_04783.2 | |
| HL_4V54_099 | 1/BB/2701:2706 | Ribsomal LSU H95 | homologous HL_5J7L_198 HL_65794.5 | |
| HL_4V54_100 | 1/BB/2745:2759 | No text annotation | homologous HL_5J7L_199 HL_74055.2 | |
| HL_4V54_101 | 1/BB/2796:2800 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_4V54_102 | 1/BB/2819:2827 | No text annotation | homologous HL_5J7L_201 HL_64690.6 | |
| HL_4V54_103 | 1/BB/2856:2861 | GNRA | homologous HL_7A0S_068 HL_37824.7 | |
| HL_4V54_104 | 1/CA/12:22 | No text annotation | homologous HL_5J7L_001 HL_89881.5 | |
| HL_4V54_105 | 1/CA/83:86 | No text annotation | geometric HL_7RQB_009 NA | |
| HL_4V54_106 | 1/CA/158:163 | GNRA | homologous HL_5J7L_003 HL_37824.7 | |
| HL_4V54_107 | 1/CA/186:191 | GNRA | homologous HL_5J7L_004 HL_37824.7 | |
| HL_4V54_108 | 1/CA/207:212 | UNCG | homologous HL_5J7L_005 HL_34617.5 | |
| HL_4V54_109 | 1/CA/259:267 | GNRA related | homologous HL_5J7L_006 HL_84299.4 | |
| HL_4V54_110 | 1/CA/296:301 | GNRA | homologous HL_5J7L_007 HL_37824.7 | |
| HL_4V54_111 | 1/CA/320:333 | No text annotation | homologous HL_5J7L_008 HL_81205.3 | |
| HL_4V54_112 | 1/CA/342:347 | UNCG | homologous HL_4LFB_009 HL_34617.5 | |
| HL_4V54_113 | 1/CA/379:384 | GNRA | homologous HL_5J7L_010 HL_37824.7 | |
| HL_4V54_114 | 1/CA/419:424 | UNCG | homologous HL_4LFB_011 HL_34617.5 | |
| HL_4V54_115 | 1/CA/462:470 | No text annotation | geometric HL_6DTD_001 HL_48417.5 | |
| HL_4V54_116 | 1/CA/522:527 | No text annotation | geometric HL_4WF9_003 HL_75660.5 | |
| HL_4V54_117 | 1/CA/617:623 | No text annotation | homologous HL_5J7L_014 HL_10453.3 | |
| HL_4V54_118 | 1/CA/689:698 | No text annotation | homologous HL_5J7L_015 HL_75293.5 | |
| HL_4V54_119 | 1/CA/726:731 | GNRA | homologous HL_5J7L_016 HL_37824.7 | |
| HL_4V54_120 | 1/CA/786:796 | No text annotation | homologous HL_5J7L_017 HL_75293.5 | |
| HL_4V54_121 | 1/CA/840:846 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_4V54_122 | 1/CA/862:867 | GNRA | homologous HL_4LFB_019 HL_37824.7 | |
| HL_4V54_123 | 1/CA/897:902 | GNRA | homologous HL_4LFB_020 HL_37824.7 | |
| HL_4V54_124 | 1/CA/963:972 | No text annotation | homologous HL_5J7L_021 HL_50779.4 | |
| HL_4V54_125 | 1/CA/1012:1017 | GNRA | homologous HL_4LFB_022 HL_37824.7 | |
| HL_4V54_126 | 1/CA/1028:1033 | No text annotation | geometric HL_2Y8W_001 HL_81100.2 | |
| HL_4V54_127 | 1/CA/1076:1081 | GNRA | homologous HL_5J7L_023 HL_37824.7 | |
| HL_4V54_128 | 1/CA/1089:1096 | T-loop related | homologous HL_5J7L_024 HL_77436.5 | |
| HL_4V54_129 | 1/CA/1134:1140 | No text annotation | homologous HL_6CZR_097 NA | |
| HL_4V54_130 | 1/CA/1165:1171 | GNRA | homologous HL_4LFB_027 HL_37824.7 | |
| HL_4V54_131 | 1/CA/1265:1270 | GNRA | homologous HL_4LFB_028 HL_37824.7 | |
| HL_4V54_132 | 1/CA/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_02887.3 | |
| HL_4V54_133 | 1/CA/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_06226.4 | |
| HL_4V54_134 | 1/CA/1449:1454 | UNCG | homologous HL_4LFB_031 HL_34617.5 | |
| HL_4V54_135 | 1/CA/1515:1520 | GNRA | homologous HL_4LFB_032 HL_37824.7 | |
| HL_4V54_208 | 1/DA/34:48 | No text annotation | homologous HL_5J7L_215 HL_97756.2 | |
| HL_4V54_136 | 1/DA/38:44 | No text annotation | geometric HL_4V9F_071 HL_47787.2 | |
| HL_4V54_137 | 1/DA/86:90 | Mini UNCG | homologous HL_5J7L_204 HL_48778.2 | |
| HL_4V54_138 | 1/DB/59:68 | No text annotation | homologous HL_7RQB_001 NA | |
| HL_4V54_139 | 1/DB/87:95 | No text annotation | homologous HL_5J7L_135 HL_80241.1 | |
| HL_4V54_140 | 1/DB/123:128 | No text annotation | homologous HL_4WF9_003 HL_75660.5 | |
| HL_4V54_141 | 1/DB/137:142 | No text annotation | ||
| HL_4V54_142 | 1/DB/158:168 | No text annotation | homologous HL_5J7L_138 HL_68257.1 | |
| HL_4V54_143 | 1/DB/194:201 | No text annotation | geometric HL_5J7L_139 HL_30068.2 | |
| HL_4V54_144 | 1/DB/225:230 | No text annotation | homologous HL_5J7L_140 HL_62934.1 | |
| HL_4V54_145 | 1/DB/246:252 | No text annotation | homologous HL_5J7L_141 HL_37369.2 | |
| HL_4V54_146 | 1/DB/305:312 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_142 HL_01609.3 | |
| HL_4V54_147 | 1/DB/319:323 | No text annotation | homologous HL_7A0S_011 HL_75660.5 | |
| HL_4V54_148 | 1/DB/327:335 | T-loop with unstacked turn | homologous HL_5J7L_144 HL_27670.2 | |
| HL_4V54_149 | 1/DB/382:392 | No text annotation | homologous HL_5J7L_145 HL_91503.7 | |
| HL_4V54_150 | 1/DB/410:417 | Pseudoknot geometry | homologous HL_5J7L_146 HL_30680.3 | |
| HL_4V54_151 | 1/DB/462:467 | GNRA | homologous HL_7RQB_015 NA | |
| HL_4V54_152 | 1/DB/487:493 | GNRA | homologous HL_5J7L_148 HL_37824.7 | |
| HL_4V54_153 | 1/DB/543:550 | No text annotation | ||
| HL_4V54_154 | 1/DB/566:575 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_150 HL_28252.6 | |
| HL_4V54_155 | 1/DB/611:617 | No text annotation | homologous HL_5J7L_151 HL_80922.2 | |
| HL_4V54_156 | 1/DB/629:634 | GNRA | homologous HL_5J7L_152 HL_37824.7 | |
| HL_4V54_157 | 1/DB/641:647 | No text annotation | homologous HL_7RQB_021 NA | |
| HL_4V54_158 | 1/DB/712:719 | GNRA wlth tandem sheared | homologous HL_5J7L_154 HL_81538.2 | |
| HL_4V54_159 | 1/DB/744:753 | No text annotation | homologous HL_4WF9_023 HL_88205.2 | |
| HL_4V54_160 | 1/DB/779:785 | No text annotation | homologous HL_7A0S_023 HL_53890.2 | |
| HL_4V54_161 | 1/DB/826:831 | No text annotation | homologous HL_7RQB_025 NA | |
| HL_4V54_163 | 1/DB/955:962 | GNRA | homologous HL_4WF9_027 HL_37824.7 | |
| HL_4V54_164 | 1/DB/978:985 | No text annotation | homologous HL_7A0S_027 HL_42998.2 | |
| HL_4V54_165 | 1/DB/1064:1074 | No text annotation | homologous HL_6PRV_001 HL_19210.3 | |
| HL_4V54_166 | 1/DB/1092:1099 | GNRA wlth tandem sheared | homologous HL_6PRV_002 HL_81538.2 | |
| HL_4V54_167 | 1/DB/1172:1177 | No text annotation | geometric HL_5M3H_001 NA | |
| HL_4V54_168 | 1/DB/1222:1227 | GNRA | homologous HL_5J7L_164 HL_37824.7 | |
| HL_4V54_169 | 1/DB/1281:1289 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_165 HL_28252.6 | |
| HL_4V54_170 | 1/DB/1324:1330 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_166 HL_57176.2 | |
| HL_4V54_171 | 1/DB/1363:1368 | GNRA | homologous HL_5J7L_167 HL_37824.7 | |
| HL_4V54_172 | 1/DB/1389:1398 | No text annotation | homologous HL_5J7L_168 HL_81545.2 | |
| HL_4V54_173 | 1/DB/1449:1462 | No text annotation | ||
| HL_4V54_174 | 1/DB/1492:1498 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_170 HL_57176.2 | |
| HL_4V54_175 | 1/DB/1533:1538 | UNCG | homologous HL_5J7L_171 HL_34617.5 | |
| HL_4V54_176 | 1/DB/1565:1568 | Mini UNCG | homologous HL_5J7L_172 HL_48778.2 | |
| HL_4V54_177 | 1/DB/1612:1619 | No text annotation | homologous HL_7RQB_040 NA | |
| HL_4V54_178 | 1/DB/1630:1636 | GNRA | homologous HL_5J7L_174 HL_37824.7 | |
| HL_4V54_179 | 1/DB/1691:1696 | UNCG | homologous HL_5J7L_175 HL_34617.5 | |
| HL_4V54_181 | 1/DB/1752:1756 | No text annotation | homologous HL_7RQB_044 NA | |
| HL_4V54_182 | 1/DB/1777:1787 | No text annotation | homologous HL_5J7L_178 HL_01962.2 | |
| HL_4V54_183 | 1/DB/1806:1811 | GNRA related | homologous HL_5J7L_179 HL_04783.2 | |
| HL_4V54_184 | 1/DB/1868:1873 | GNRA variation | homologous HL_5J7L_180 HL_37824.7 | |
| HL_4V54_185 | 1/DB/1910:1920 | No text annotation | homologous HL_9DFE_046 HL_25847.2 | |
| HL_4V54_186 | 1/DB/1949:1957 | No text annotation | homologous HL_5J7L_182 HL_20167.2 | |
| HL_4V54_187 | 1/DB/2027:2036 | No text annotation | homologous HL_4WF9_047 HL_61996.2 | |
| HL_4V54_188 | 1/DB/2142:2149 | No text annotation | ||
| HL_4V54_189 | 1/DB/2209:2215 | No text annotation | homologous HL_5J7L_185 HL_49922.4 | |
| HL_4V54_190 | 1/DB/2248:2256 | No text annotation | homologous HL_5J7L_186 HL_85367.2 | |
| HL_4V54_191 | 1/DB/2264:2276 | No text annotation | homologous HL_5J7L_187 HL_91939.2 | |
| HL_4V54_210 | 1/DB/2304:2312 | No text annotation | homologous HL_5J7L_219 HL_50860.2 | |
| HL_4V54_193 | 1/DB/2324:2331 | Pseudoknot geometry | homologous HL_5J7L_189 HL_93324.4 | |
| HL_4V54_194 | 1/DB/2356:2361 | GNRA | homologous HL_5J7L_190 HL_37824.7 | |
| HL_4V54_195 | 1/DB/2374:2379 | GNRA | homologous HL_7RQB_058 NA | |
| HL_4V54_196 | 1/DB/2404:2413 | No text annotation | homologous HL_5J7L_192 HL_53454.2 | |
| HL_4V54_197 | 1/DB/2471:2479 | No text annotation | homologous HL_5J7L_193 HL_32735.2 | |
| HL_4V54_198 | 1/DB/2528:2535 | No text annotation | homologous HL_5J7L_194 HL_31585.3 | |
| HL_4V54_199 | 1/DB/2551:2557 | No text annotation | homologous HL_4WF9_058 HL_30068.2 | |
| HL_4V54_200 | 1/DB/2594:2599 | GNRA | homologous HL_5J7L_196 HL_37824.7 | |
| HL_4V54_201 | 1/DB/2658:2663 | GNRA | homologous HL_5J7L_197 HL_37824.7 | |
| HL_4V54_202 | 1/DB/2701:2706 | Ribsomal LSU H95 | homologous HL_5J7L_198 HL_65794.5 | |
| HL_4V54_203 | 1/DB/2745:2759 | No text annotation | homologous HL_5J7L_199 HL_74055.2 | |
| HL_4V54_204 | 1/DB/2796:2800 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_4V54_205 | 1/DB/2819:2827 | No text annotation | homologous HL_5J7L_201 HL_64690.6 | |
| HL_4V54_206 | 1/DB/2856:2861 | GNRA | homologous HL_7A0S_068 HL_37824.7 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4V54_005 | UNCG | ||
| HL_4V54_024 | GNRA | ||
| HL_4V54_038 | No text annotation | ||
| HL_4V54_059 | No text annotation | ||
| HL_4V54_064 | No text annotation | ||
| HL_4V54_077 | No text annotation | ||
| HL_4V54_089 | No text annotation | ||
| HL_4V54_162 | No text annotation | ||
| HL_4V54_180 | No text annotation | ||
| HL_4V54_192 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4V54_001 | 1/AA/30:32, 1/AA/552:553 | Single bulged G | homologous IL_5J7L_001 IL_00225.13 | |
| IL_4V54_002 | 1/AA/44:45, 1/AA/396:398 | Single bulged A | homologous IL_5J7L_002 IL_31462.5 | |
| IL_4V54_003 | 1/AA/47:52, 1/AA/359:361 | No text annotation | homologous IL_5J7L_003 IL_14177.2 | |
| IL_4V54_004 | 1/AA/54:56, 1/AA/356:357 | Minor groove platform | homologous IL_4LFB_004 IL_51454.2 | |
| IL_4V54_005 | 1/AA/63:66, 1/AA/103:104 | Multiple bulged bases | homologous IL_5J7L_005 IL_82107.4 | |
| IL_4V54_006 | 1/AA/67:69, 1/AA/99:102 | Minor groove platform with extra cWW | homologous IL_5J7L_006 IL_90351.1 | |
| IL_4V54_007 | 1/AA/70:73, 1/AA/97:98 | Minor groove platform | homologous IL_5J7L_007 IL_15052.4 | |
| IL_4V54_008 | 1/AA/75:76, 1/AA/93:95 | Single bulged G | homologous IL_5J7L_395 IL_00225.13 | |
| IL_4V54_009 | 1/AA/128:131, 1/AA/231:233 | Isolated non-canonical cWW pair | homologous IL_5J7L_009 IL_57744.1 | |
| IL_4V54_010 | 1/AA/132:136, 1/AA/227:230 | Minor groove platform related | homologous IL_5J7L_010 IL_64231.5 | |
| IL_4V54_011 | 1/AA/144:146, 1/AA/176:178 | Isolated cWH basepair | homologous IL_5J7L_011 IL_10167.5 | |
| IL_4V54_012 | 1/AA/147:153, 1/AA/168:175 | tWH-tWH-tHW-tHW | homologous IL_5J7L_012 IL_80604.6 | |
| IL_4V54_013 | 1/AA/203:206, 1/AA/213:214 | Minor groove platform | geometric IL_3MXH_005 IL_15052.4 | |
| IL_4V54_014 | 1/AA/242:247, 1/AA/277:284 | Kink-turn with non-sequential stacking | homologous IL_5J7L_014 IL_46174.3 | |
| IL_4V54_015 | 1/AA/249:252, 1/AA/274:275 | No text annotation | homologous IL_5J7L_015 IL_47074.2 | |
| IL_4V54_016 | 1/AA/292:293, 1/AA/304:308 | C-loop | homologous IL_5J7L_016 IL_03109.3 | |
| IL_4V54_017 | 1/AA/367:369, 1/AA/392:393 | Single bulged U | geometric IL_5J7L_017 IL_89505.4 | |
| IL_4V54_018 | 1/AA/371:375, 1/AA/389:390 | C-loop | geometric IL_4LFB_015 IL_03109.3 | |
| IL_4V54_019 | 1/AA/375:376, 1/AA/387:389 | Single bulged G | homologous IL_5J7L_019 IL_00225.13 | |
| IL_4V54_020 | 1/AA/409:416, 1/AA/427:433 | No text annotation | homologous IL_4LFB_017 IL_28026.3 | |
| IL_4V54_021 | 1/AA/440:442, 1/AA/492:497 | No text annotation | homologous IL_5J7L_021 IL_33323.1 | |
| IL_4V54_022 | 1/AA/446:450, 1/AA/483:488 | tSH-tHW-tWW | homologous IL_5J7L_022 IL_88269.4 | |
| IL_4V54_023 | 1/AA/450:454, 1/AA/479:483 | No text annotation | ||
| IL_4V54_024 | 1/AA/454:455, 1/AA/477:479 | Single stack bend | geometric IL_5J7L_032 IL_26793.1 | |
| IL_4V54_025 | 1/AA/458:459, 1/AA/472:474 | Single stack bend | geometric IL_4V83_236 IL_90729.1 | |
| IL_4V54_026 | 1/AA/460:462, 1/AA/470:471 | Single bulged A | geometric IL_5FJC_001 IL_31462.5 | |
| IL_4V54_027 | 1/AA/504:511, 1/AA/540:541 | SSU/LSU pseudoknot | homologous IL_5J7L_024 IL_41203.4 | |
| IL_4V54_028 | 1/AA/515:521, 1/AA/528:536 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_4V54_029 | 1/AA/569:575, 1/AA/880:881 | No text annotation | homologous IL_5J7L_026 IL_38186.6 | |
| IL_4V54_030 | 1/AA/580:584, 1/AA/757:761 | tSH-tHW-tHS | homologous IL_5J7L_027 IL_17136.7 | |
| IL_4V54_031 | 1/AA/594:596, 1/AA/644:645 | Major groove platform | homologous IL_5J7L_028 IL_48076.6 | |
| IL_4V54_032 | 1/AA/597:598, 1/AA/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_029 IL_68140.4 | |
| IL_4V54_033 | 1/AA/605:612, 1/AA/628:633 | No text annotation | homologous IL_5J7L_030 IL_78349.3 | |
| IL_4V54_034 | 1/AA/654:655, 1/AA/751:754 | Major groove platform; stack outside cWW | homologous IL_5J7L_031 IL_50694.7 | |
| IL_4V54_035 | 1/AA/658:659, 1/AA/746:748 | Single stack bend | homologous IL_5J7L_032 IL_26793.1 | |
| IL_4V54_036 | 1/AA/662:666, 1/AA/740:743 | Tandem non-canonical cWW pairs | homologous IL_5J7L_033 IL_85033.2 | |
| IL_4V54_357 | 1/AA/673:677, 1/AA/713:717 | Triple non-canonical cWW pairs | homologous IL_5J7L_361 IL_49751.4 | |
| IL_4V54_038 | 1/AA/684:688, 1/AA/699:706 | Kink-turn | homologous IL_5J7L_035 IL_01488.3 | |
| IL_4V54_039 | 1/AA/774:778, 1/AA/804:805 | Left turn | homologous IL_4LFB_032 IL_29346.2 | |
| IL_4V54_040 | 1/AA/779:783, 1/AA/799:803 | tSH-tHW-tHS | homologous IL_5J7L_037 IL_17136.7 | |
| IL_4V54_041 | 1/AA/887:894, 1/AA/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_5J7L_038 IL_41756.4 | |
| IL_4V54_042 | 1/AA/922:923, 1/AA/1393:1395 | Single bulged A | homologous IL_5J7L_039 IL_31462.5 | |
| IL_4V54_043 | 1/AA/925:927, 1/AA/1390:1391 | Single bulged G | homologous IL_5J7L_040 IL_00225.13 | |
| IL_4V54_044 | 1/AA/933:935, 1/AA/1380:1384 | Minor groove platform | homologous IL_5J7L_041 IL_47078.3 | |
| IL_4V54_045 | 1/AA/953:954, 1/AA/1226:1228 | No text annotation | homologous IL_6CZR_150 NA | |
| IL_4V54_046 | 1/AA/993:997, 1/AA/1044:1045 | Minor groove platform | homologous IL_5J7L_043 IL_47078.3 | |
| IL_4V54_047 | 1/AA/998:999, 1/AA/1041:1043 | Single stack bend | homologous IL_5J7L_044 IL_26793.1 | |
| IL_4V54_048 | 1/AA/1048:1050, 1/AA/1208:1209 | Single bulged U | homologous IL_5J7L_046 IL_89505.4 | |
| IL_4V54_049 | 1/AA/1052:1056, 1/AA/1204:1206 | Isolated cWS basepair | homologous IL_4LFB_044 IL_76319.5 | |
| IL_4V54_050 | 1/AA/1057:1058, 1/AA/1199:1203 | Minor groove platform | homologous IL_5J7L_048 IL_95583.2 | |
| IL_4V54_051 | 1/AA/1060:1061, 1/AA/1195:1197 | Single bulged A | homologous IL_5J7L_049 IL_31462.5 | |
| IL_4V54_052 | 1/AA/1061:1063, 1/AA/1193:1195 | Isolated non-canonical cWW pair | geometric IL_5J7L_050 IL_28037.2 | |
| IL_4V54_053 | 1/AA/1124:1128, 1/AA/1144:1149 | No text annotation | homologous IL_5J7L_051 IL_06691.1 | |
| IL_4V54_054 | 1/AA/1129:1132, 1/AA/1142:1143 | Minor groove platform | homologous IL_5J7L_052 IL_15052.4 | |
| IL_4V54_055 | 1/AA/1158:1161, 1/AA/1175:1181 | No text annotation | homologous IL_5J7L_053 IL_42032.1 | |
| IL_4V54_056 | 1/AA/1247:1253, 1/AA/1284:1290 | No text annotation | homologous IL_5J7L_054 IL_09129.2 | |
| IL_4V54_057 | 1/AA/1255:1258, 1/AA/1277:1282 | 180 degree turn | homologous IL_5J7L_055 IL_11344.2 | |
| IL_4V54_058 | 1/AA/1259:1263, 1/AA/1272:1276 | Triple sheared | homologous IL_5J7L_056 IL_17948.2 | |
| IL_4V54_059 | 1/AA/1303:1308, 1/AA/1329:1334 | No text annotation | homologous IL_4LFB_055 IL_85536.2 | |
| IL_4V54_060 | 1/AA/1399:1401, 1/AA/1501:1504 | No text annotation | homologous IL_5J7L_058 IL_61438.4 | |
| IL_4V54_061 | 1/AA/1401:1404, 1/AA/1497:1501 | No text annotation | geometric IL_4V88_464 NA | |
| IL_4V54_062 | 1/AA/1405:1407, 1/AA/1494:1496 | Isolated non-canonical cWW pair | geometric IL_5VCI_002 IL_87907.2 | |
| IL_4V54_063 | 1/AA/1407:1409, 1/AA/1491:1494 | No text annotation | geometric IL_6DME_003 IL_55516.2 | |
| IL_4V54_064 | 1/AA/1412:1414, 1/AA/1486:1488 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 IL_87907.2 | |
| IL_4V54_065 | 1/AA/1416:1419, 1/AA/1481:1484 | Double sheared | homologous IL_5J7L_062 IL_09705.15 | |
| IL_4V54_066 | 1/AA/1430:1435, 1/AA/1466:1470 | Triple sheared related | homologous IL_5J7L_063 IL_80231.1 | |
| IL_4V54_067 | 1/AA/1440:1442, 1/AA/1460:1461 | Single bulged A | homologous IL_5J7L_064 IL_31462.5 | |
| IL_4V54_068 | 1/AA/1445:1448, 1/AA/1455:1457 | No text annotation | homologous IL_5J7L_065 IL_31531.3 | |
| IL_4V54_069 | 1/BA/17:18, 1/BA/65:67 | Major groove intercalation | homologous IL_5J7L_355 IL_31462.5 | |
| IL_4V54_070 | 1/BA/23:28, 1/BA/56:60 | No text annotation | homologous IL_7A0S_103 IL_18472.4 | |
| IL_4V54_071 | 1/BA/30:31, 1/BA/51:54 | No text annotation | homologous IL_8P9A_366 IL_15052.4 | |
| IL_4V54_072 | 1/BA/34:38, 1/BA/44:48 | Symmetric double minor groove platform | homologous IL_5J7L_358 IL_58103.11 | |
| IL_4V54_073 | 1/BA/71:79, 1/BA/97:105 | Bacterial 5S Loop E | homologous IL_5J7L_359 IL_56455.6 | |
| IL_4V54_074 | 1/BB/24:30, 1/BB/510:516 | Triple sheared with non-canonical cWW | geometric IL_5J7L_245 IL_04021.2 | |
| IL_4V54_075 | 1/BB/36:37, 1/BB/442:444 | Single bulged A | homologous IL_5J7L_246 IL_31462.5 | |
| IL_4V54_076 | 1/BB/43:44, 1/BB/434:436 | Minor groove platform | homologous IL_5J7L_247 IL_51454.2 | |
| IL_4V54_077 | 1/BB/81:85, 1/BB/97:105 | No text annotation | homologous IL_5J7L_248 IL_37015.1 | |
| IL_4V54_078 | 1/BB/183:184, 1/BB/212:214 | Single stack bend | homologous IL_5J7L_249 IL_90729.1 | |
| IL_4V54_079 | 1/BB/188:194, 1/BB/201:208 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5J7L_250 IL_04346.10 | |
| IL_4V54_080 | 1/BB/239:245, 1/BB/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5J7L_251 IL_26307.2 | |
| IL_4V54_081 | 1/BB/269:271, 1/BB/366:370 | No text annotation | homologous IL_5J7L_252 IL_47972.1 | |
| IL_4V54_082 | 1/BB/274:281, 1/BB/359:363 | No text annotation | homologous IL_5J7L_253 IL_77870.1 | |
| IL_4V54_083 | 1/BB/293:295, 1/BB/343:347 | No text annotation | homologous IL_4WF9_014 IL_69440.3 | |
| IL_4V54_084 | 1/BB/481:484, 1/BB/496:509 | No text annotation | homologous IL_5J7L_255 IL_81516.2 | |
| IL_4V54_085 | 1/BB/536:539, 1/BB/554:557 | Double sheared | homologous IL_5J7L_256 IL_09705.15 | |
| IL_4V54_086 | 1/BB/564:566, 1/BB/575:577 | Isolated non-canonical cWW pair | homologous IL_4WF9_017 IL_07785.1 | |
| IL_4V54_087 | 1/BB/606:610, 1/BB/618:622 | AAA cross-strand stack | homologous IL_5J7L_258 IL_66798.2 | |
| IL_4V54_088 | 1/BB/672:674, 1/BB/806:808 | No text annotation | geometric IL_7RQB_017 NA | |
| IL_4V54_089 | 1/BB/674:678, 1/BB/799:806 | tHW-tHW cross-strand stack | homologous IL_5J7L_260 IL_54041.2 | |
| IL_4V54_090 | 1/BB/697:698, 1/BB/763:765 | Single bulged A | geometric IL_5J7L_261 IL_31462.5 | |
| IL_4V54_091 | 1/BB/702:703, 1/BB/728:730 | Single bulged G | homologous IL_5J7L_262 IL_00225.13 | |
| IL_4V54_092 | 1/BB/703:707, 1/BB/724:728 | Triple sheared | geometric IL_5J7L_263 IL_50730.2 | |
| IL_4V54_093 | 1/BB/738:740, 1/BB/757:758 | Major groove platform | homologous IL_5J7L_264 IL_48076.6 | |
| IL_4V54_094 | 1/BB/775:777, 1/BB/787:791 | Multiple bulged bases | geometric IL_5J7L_265 IL_06549.2 | |
| IL_4V54_095 | 1/BB/837:838, 1/BB/940:942 | Single stack bend | homologous IL_4WF9_028 IL_90729.1 | |
| IL_4V54_096 | 1/BB/844:848, 1/BB/930:934 | No text annotation | homologous IL_5J7L_399 IL_96236.1 | |
| IL_4V54_097 | 1/BB/850:851, 1/BB/926:928 | Single stack bend | homologous IL_5J7L_269 IL_26793.1 | |
| IL_4V54_098 | 1/BB/856:858, 1/BB/919:921 | Isolated non-canonical cWW pair | geometric IL_4V88_472 NA | |
| IL_4V54_099 | 1/BB/858:862, 1/BB/915:919 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_4V9F_033 IL_38862.4 | |
| IL_4V54_100 | 1/BB/862:863, 1/BB/913:915 | Single bulged G | homologous IL_5J7L_271 IL_00225.13 | |
| IL_4V54_101 | 1/BB/864:868, 1/BB/909:912 | C-loop | homologous IL_5J7L_272 IL_26222.2 | |
| IL_4V54_102 | 1/BB/870:872, 1/BB/905:907 | Isolated non-canonical cWW pair | homologous IL_5J7L_273 IL_28037.2 | |
| IL_4V54_103 | 1/BB/994:996, 1/BB/1159:1160 | Single bulged C | homologous IL_5J7L_276 IL_61258.15 | |
| IL_4V54_104 | 1/BB/998:1002, 1/BB/1153:1157 | UAA/GAN | homologous IL_5J7L_277 IL_38507.2 | |
| IL_4V54_105 | 1/BB/1004:1011, 1/BB/1150:1151 | SSU/LSU pseudoknot | geometric IL_5J7L_278 IL_41203.4 | |
| IL_4V54_106 | 1/BB/1011:1013, 1/BB/1149:1150 | Single bulged U | homologous IL_5J7L_279 IL_89505.4 | |
| IL_4V54_107 | 1/BB/1018:1024, 1/BB/1140:1144 | Kink-turn related | geometric IL_4WF9_039 IL_57188.5 | |
| IL_4V54_108 | 1/BB/1024:1030, 1/BB/1124:1140 | No text annotation | geometric IL_5J7L_281 IL_50715.3 | |
| IL_4V54_109 | 1/BB/1031:1034, 1/BB/1121:1123 | Isolated non-canonical cWW pair | homologous IL_5J7L_282 IL_57744.1 | |
| IL_4V54_110 | 1/BB/1038:1041, 1/BB/1114:1117 | Tandem non-canonical cWW pairs | homologous IL_5J7L_283 IL_85033.2 | |
| IL_4V54_111 | 1/BB/1043:1051, 1/BB/1108:1112 | Kink-turn | homologous IL_5J7L_284 IL_99692.2 | |
| IL_4V54_112 | 1/BB/1059:1062, 1/BB/1076:1079 | No text annotation | homologous IL_6PRV_001 IL_92446.2 | |
| IL_4V54_113 | 1/BB/1087:1090, 1/BB/1101:1102 | No text annotation | homologous IL_6PRV_002 NA | |
| IL_4V54_114 | 1/BB/1196:1198, 1/BB/1247:1250 | Isolated cWS basepair | homologous IL_5J7L_286 IL_42997.3 | |
| IL_4V54_115 | 1/BB/1202:1206, 1/BB/1240:1243 | No text annotation | homologous IL_5J7L_287 IL_91920.1 | |
| IL_4V54_116 | 1/BB/1208:1215, 1/BB/1234:1238 | Kink-turn | homologous IL_7RQB_047 NA | |
| IL_4V54_117 | 1/BB/1262:1269, 1/BB/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_289 IL_04346.10 | |
| IL_4V54_118 | 1/BB/1310:1313, 1/BB/1603:1604 | Major groove platform; stack outside cWW | homologous IL_7RQB_050 NA | |
| IL_4V54_119 | 1/BB/1319:1323, 1/BB/1331:1333 | C-loop | homologous IL_5J7L_291 IL_63596.11 | |
| IL_4V54_120 | 1/BB/1351:1355, 1/BB/1376:1380 | UAA/GAN | homologous IL_5J7L_292 IL_89021.2 | |
| IL_4V54_121 | 1/BB/1357:1361, 1/BB/1370:1374 | tSH-tHW-tHS | homologous IL_5J7L_293 IL_17136.7 | |
| IL_4V54_122 | 1/BB/1415:1416, 1/BB/1582:1587 | No text annotation | homologous IL_5J7L_294 IL_87211.1 | |
| IL_4V54_123 | 1/BB/1417:1421, 1/BB/1577:1581 | UAA/GAN | homologous IL_7RQB_055 NA | |
| IL_4V54_124 | 1/BB/1432:1435, 1/BB/1557:1561 | Tandem non-canonical cWW pairs | homologous IL_5J7L_296 IL_58112.2 | |
| IL_4V54_125 | 1/BB/1437:1440, 1/BB/1551:1555 | No text annotation | ||
| IL_4V54_126 | 1/BB/1468:1471, 1/BB/1520:1524 | No text annotation | homologous IL_5J7L_299 IL_68574.4 | |
| IL_4V54_127 | 1/BB/1474:1478, 1/BB/1513:1517 | tSH-tHW-tHS | homologous IL_5J7L_300 IL_38862.4 | |
| IL_4V54_128 | 1/BB/1481:1482, 1/BB/1507:1510 | No text annotation | ||
| IL_4V54_129 | 1/BB/1489:1491, 1/BB/1499:1500 | Single bulged A | homologous IL_5J7L_302 IL_31462.5 | |
| IL_4V54_130 | 1/BB/1526:1529, 1/BB/1542:1546 | UAA/GAN variation | homologous IL_5J7L_303 IL_23774.1 | |
| IL_4V54_131 | 1/BB/1651:1656, 1/BB/2004:2006 | No text annotation | homologous IL_5J7L_304 IL_12566.4 | |
| IL_4V54_132 | 1/BB/1663:1665, 1/BB/1995:1997 | Isolated tWW turn | homologous IL_4WF9_063 IL_67095.2 | |
| IL_4V54_133 | 1/BB/1666:1669, 1/BB/1993:1994 | Major groove platform; stack outside cWW | homologous IL_7RQB_066 NA | |
| IL_4V54_358 | 1/BB/1666:1674, 1/BB/1990:1994 | No text annotation | homologous IL_5J7L_386 IL_22854.4 | |
| IL_4V54_134 | 1/BB/1669:1674, 1/BB/1990:1993 | Intercalated tWH | geometric IL_5J7L_307 IL_76758.2 | |
| IL_4V54_135 | 1/BB/1686:1691, 1/BB/1696:1702 | tSH-tSH-tHH-tHS | geometric IL_5J7L_308 IL_47346.2 | |
| IL_4V54_136 | 1/BB/1712:1718, 1/BB/1742:1746 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_5J7L_309 IL_88269.4 | |
| IL_4V54_137 | 1/BB/1720:1724, 1/BB/1736:1740 | Triple sheared | homologous IL_5J7L_310 IL_50730.2 | |
| IL_4V54_138 | 1/BB/1727:1728, 1/BB/1731:1733 | Single bulged C | geometric IL_5J7L_311 IL_61258.15 | |
| IL_4V54_139 | 1/BB/1770:1771, 1/BB/1980:1982 | Single bulged A | homologous IL_5J7L_312 IL_31462.5 | |
| IL_4V54_140 | 1/BB/1798:1804, 1/BB/1813:1821 | Kink-turn related | homologous IL_5J7L_313 IL_17069.5 | |
| IL_4V54_141 | 1/BB/1837:1840, 1/BB/1902:1903 | Minor groove platform, major groove intercalation | homologous IL_5J7L_314 IL_95583.2 | |
| IL_4V54_142 | 1/BB/1841:1842, 1/BB/1898:1901 | Major groove intercalation | homologous IL_5J7L_315 IL_82107.4 | |
| IL_4V54_143 | 1/BB/1846:1849, 1/BB/1893:1894 | Minor groove platform | homologous IL_7RQB_073 NA | |
| IL_4V54_359 | 1/BB/1851:1860, 1/BB/1882:1891 | No text annotation | homologous IL_5J7L_387 IL_61249.1 | |
| IL_4V54_144 | 1/BB/1864:1867, 1/BB/1874:1878 | UAA/GAN variation | homologous IL_5J7L_317 IL_77691.5 | |
| IL_4V54_145 | 1/BB/1933:1934, 1/BB/1964:1967 | Bulged stacked bases | geometric IL_5J7L_318 IL_22551.3 | |
| IL_4V54_146 | 1/BB/1934:1945, 1/BB/1961:1964 | No text annotation | homologous IL_7A0S_072 IL_04332.3 | |
| IL_4V54_147 | 1/BB/2050:2052, 1/BB/2617:2618 | Major groove platform | homologous IL_5J7L_320 IL_48076.6 | |
| IL_4V54_148 | 1/BB/2054:2056, 1/BB/2612:2615 | No text annotation | homologous IL_5J7L_321 IL_83389.2 | |
| IL_4V54_149 | 1/BB/2067:2069, 1/BB/2442:2443 | Single bulged U | homologous IL_7A0S_075 IL_89505.4 | |
| IL_4V54_150 | 1/BB/2070:2071, 1/BB/2438:2441 | Minor groove platform | homologous IL_4WF9_081 IL_51454.2 | |
| IL_4V54_151 | 1/BB/2081:2083, 1/BB/2236:2239 | Isolated tHS basepair with bulges | homologous IL_5J7L_325 IL_85599.2 | |
| IL_4V54_152 | 1/BB/2085:2087, 1/BB/2232:2234 | Isolated non-canonical cWW pair | homologous IL_5J7L_326 IL_28037.2 | |
| IL_4V54_153 | 1/BB/2103:2105, 1/BB/2184:2186 | Stack and bulge | geometric IL_2ET8_001 IL_31737.3 | |
| IL_4V54_154 | 1/BB/2108:2110, 1/BB/2179:2181 | No text annotation | ||
| IL_4V54_155 | 1/BB/2202:2204, 1/BB/2220:2221 | Single bulged U | homologous IL_5J7L_331 IL_89505.4 | |
| IL_4V54_156 | 1/BB/2297:2299, 1/BB/2317:2321 | No text annotation | homologous IL_5J7L_332 IL_61476.2 | |
| IL_4V54_157 | 1/BB/2350:2353, 1/BB/2364:2367 | Double sheared | homologous IL_7RQB_089 NA | |
| IL_4V54_158 | 1/BB/2401:2403, 1/BB/2414:2415 | No text annotation | ||
| IL_4V54_159 | 1/BB/2453:2454, 1/BB/2498:2500 | Single stack bend | geometric IL_4WF9_089 IL_26793.1 | |
| IL_4V54_160 | 1/BB/2454:2455, 1/BB/2496:2498 | Major groove platform | homologous IL_4WF9_090 IL_48076.6 | |
| IL_4V54_161 | 1/BB/2457:2459, 1/BB/2493:2494 | Major groove platform | homologous IL_4WF9_091 IL_48076.6 | |
| IL_4V54_162 | 1/BB/2459:2461, 1/BB/2489:2493 | Major groove minor groove platform with extra cWW | geometric IL_5J7L_337 IL_51387.2 | |
| IL_4V54_163 | 1/BB/2466:2470, 1/BB/2480:2484 | Triple sheared | homologous IL_5J7L_338 IL_17948.2 | |
| IL_4V54_164 | 1/BB/2507:2508, 1/BB/2580:2582 | Major groove platform | homologous IL_4WF9_094 IL_07039.3 | |
| IL_4V54_165 | 1/BB/2510:2512, 1/BB/2574:2578 | Isolated non-canonical cWW with bulges | homologous IL_5J7L_340 IL_07785.1 | |
| IL_4V54_166 | 1/BB/2512:2513, 1/BB/2571:2574 | No text annotation | geometric IL_5J7L_341 IL_42626.2 | |
| IL_4V54_167 | 1/BB/2522:2523, 1/BB/2540:2543 | Major groove platform with intercalation | homologous IL_5J7L_342 IL_02555.1 | |
| IL_4V54_168 | 1/BB/2591:2592, 1/BB/2601:2603 | Single bulged A | homologous IL_5J7L_344 IL_31462.5 | |
| IL_4V54_169 | 1/BB/2636:2640, 1/BB/2774:2782 | tSH-tHS-tHW | homologous IL_5J7L_345 IL_04638.3 | |
| IL_4V54_170 | 1/BB/2652:2658, 1/BB/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_5J7L_346 IL_16458.4 | |
| IL_4V54_171 | 1/BB/2680:2684, 1/BB/2725:2727 | C-loop | homologous IL_5J7L_347 IL_63596.11 | |
| IL_4V54_172 | 1/BB/2687:2691, 1/BB/2718:2722 | No text annotation | homologous IL_5J7L_348 IL_23774.1 | |
| IL_4V54_173 | 1/BB/2695:2696, 1/BB/2711:2714 | Multiple bulged bases | homologous IL_5J7L_349 IL_42626.2 | |
| IL_4V54_174 | 1/BB/2737:2742, 1/BB/2762:2767 | UAA/GAN with extra cWW | homologous IL_5J7L_350 IL_49767.8 | |
| IL_4V54_175 | 1/BB/2806:2811, 1/BB/2889:2892 | No text annotation | geometric IL_5J7L_351 IL_29471.1 | |
| IL_4V54_176 | 1/BB/2838:2839, 1/BB/2878:2880 | Major groove intercalation | homologous IL_5J7L_352 IL_66635.5 | |
| IL_4V54_177 | 1/BB/2843:2846, 1/BB/2870:2874 | Multiple bulged bases with non-canonical cWW | homologous IL_5J7L_353 IL_64231.5 | |
| IL_4V54_178 | 1/BB/2847:2852, 1/BB/2865:2869 | No text annotation | homologous IL_7A0S_101 IL_70411.2 | |
| IL_4V54_179 | 1/CA/30:32, 1/CA/552:553 | Single bulged G | homologous IL_5J7L_001 IL_00225.13 | |
| IL_4V54_180 | 1/CA/44:45, 1/CA/396:398 | Single bulged A | homologous IL_5J7L_002 IL_31462.5 | |
| IL_4V54_181 | 1/CA/47:52, 1/CA/359:361 | No text annotation | geometric IL_5J7L_003 IL_14177.2 | |
| IL_4V54_182 | 1/CA/54:56, 1/CA/356:357 | Minor groove platform | homologous IL_4LFB_004 IL_51454.2 | |
| IL_4V54_183 | 1/CA/63:66, 1/CA/103:104 | Multiple bulged bases | homologous IL_5J7L_005 IL_82107.4 | |
| IL_4V54_184 | 1/CA/67:69, 1/CA/99:102 | Minor groove platform with extra cWW | homologous IL_5J7L_006 IL_90351.1 | |
| IL_4V54_185 | 1/CA/70:73, 1/CA/97:98 | Minor groove platform | homologous IL_5J7L_007 IL_15052.4 | |
| IL_4V54_186 | 1/CA/75:76, 1/CA/93:95 | Major groove intercalation | geometric IL_5J7L_352 IL_66635.5 | |
| IL_4V54_187 | 1/CA/128:131, 1/CA/231:233 | Isolated non-canonical cWW pair | homologous IL_5J7L_009 IL_57744.1 | |
| IL_4V54_188 | 1/CA/132:136, 1/CA/227:230 | Minor groove platform related | homologous IL_5J7L_010 IL_64231.5 | |
| IL_4V54_189 | 1/CA/144:146, 1/CA/176:178 | Isolated cWH basepair | homologous IL_5J7L_011 IL_10167.5 | |
| IL_4V54_190 | 1/CA/147:153, 1/CA/168:175 | tWH-tWH-tHW-tHW | homologous IL_5J7L_012 IL_80604.6 | |
| IL_4V54_191 | 1/CA/203:206, 1/CA/213:214 | Minor groove platform | geometric IL_3MXH_005 IL_15052.4 | |
| IL_4V54_192 | 1/CA/242:247, 1/CA/277:284 | Kink-turn with non-sequential stacking | homologous IL_5J7L_014 IL_46174.3 | |
| IL_4V54_193 | 1/CA/249:252, 1/CA/274:275 | No text annotation | homologous IL_5J7L_015 IL_47074.2 | |
| IL_4V54_194 | 1/CA/292:293, 1/CA/304:308 | C-loop | homologous IL_5J7L_016 IL_03109.3 | |
| IL_4V54_195 | 1/CA/367:369, 1/CA/392:393 | Single bulged U | geometric IL_5J7L_017 IL_89505.4 | |
| IL_4V54_196 | 1/CA/371:375, 1/CA/389:390 | C-loop | homologous IL_4LFB_015 IL_03109.3 | |
| IL_4V54_197 | 1/CA/375:376, 1/CA/387:389 | Single bulged G | geometric IL_5J7L_019 IL_00225.13 | |
| IL_4V54_198 | 1/CA/409:416, 1/CA/427:433 | No text annotation | homologous IL_4LFB_017 IL_28026.3 | |
| IL_4V54_199 | 1/CA/440:442, 1/CA/492:497 | No text annotation | homologous IL_5J7L_021 IL_33323.1 | |
| IL_4V54_200 | 1/CA/446:450, 1/CA/483:488 | tSH-tHW-tWW | geometric IL_5J7L_022 IL_88269.4 | |
| IL_4V54_201 | 1/CA/450:454, 1/CA/479:483 | No text annotation | ||
| IL_4V54_202 | 1/CA/454:455, 1/CA/477:479 | Single stack bend | geometric IL_5J7L_032 IL_26793.1 | |
| IL_4V54_203 | 1/CA/458:459, 1/CA/472:474 | Single stack bend | geometric IL_4V83_236 IL_90729.1 | |
| IL_4V54_204 | 1/CA/460:462, 1/CA/470:471 | Single bulged A | geometric IL_5FJC_001 IL_31462.5 | |
| IL_4V54_205 | 1/CA/504:511, 1/CA/540:541 | SSU/LSU pseudoknot | homologous IL_5J7L_024 IL_41203.4 | |
| IL_4V54_206 | 1/CA/515:521, 1/CA/528:536 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_4V54_207 | 1/CA/569:575, 1/CA/880:881 | No text annotation | homologous IL_5J7L_026 IL_38186.6 | |
| IL_4V54_208 | 1/CA/580:584, 1/CA/757:761 | tSH-tHW-tHS | homologous IL_5J7L_027 IL_17136.7 | |
| IL_4V54_209 | 1/CA/594:596, 1/CA/644:645 | Major groove platform | homologous IL_5J7L_028 IL_48076.6 | |
| IL_4V54_210 | 1/CA/597:598, 1/CA/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_029 IL_68140.4 | |
| IL_4V54_211 | 1/CA/605:612, 1/CA/628:633 | No text annotation | homologous IL_5J7L_030 IL_78349.3 | |
| IL_4V54_212 | 1/CA/654:655, 1/CA/751:754 | Major groove platform; stack outside cWW | homologous IL_5J7L_031 IL_50694.7 | |
| IL_4V54_213 | 1/CA/658:659, 1/CA/746:748 | Single stack bend | homologous IL_5J7L_032 IL_26793.1 | |
| IL_4V54_214 | 1/CA/662:666, 1/CA/740:743 | Tandem non-canonical cWW pairs | homologous IL_5J7L_033 IL_85033.2 | |
| IL_4V54_360 | 1/CA/673:677, 1/CA/713:717 | Triple non-canonical cWW pairs | homologous IL_5J7L_361 IL_49751.4 | |
| IL_4V54_216 | 1/CA/684:688, 1/CA/699:706 | Kink-turn | homologous IL_5J7L_035 IL_01488.3 | |
| IL_4V54_217 | 1/CA/774:778, 1/CA/804:805 | Left turn | homologous IL_4LFB_032 IL_29346.2 | |
| IL_4V54_218 | 1/CA/779:783, 1/CA/799:803 | tSH-tHW-tHS | homologous IL_5J7L_037 IL_17136.7 | |
| IL_4V54_219 | 1/CA/887:894, 1/CA/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_5J7L_038 IL_41756.4 | |
| IL_4V54_220 | 1/CA/922:923, 1/CA/1393:1395 | Single bulged A | homologous IL_5J7L_039 IL_31462.5 | |
| IL_4V54_221 | 1/CA/925:927, 1/CA/1390:1391 | Single bulged G | homologous IL_5J7L_040 IL_00225.13 | |
| IL_4V54_222 | 1/CA/933:935, 1/CA/1380:1384 | Minor groove platform | homologous IL_5J7L_041 IL_47078.3 | |
| IL_4V54_223 | 1/CA/953:954, 1/CA/1226:1228 | No text annotation | homologous IL_6CZR_150 NA | |
| IL_4V54_224 | 1/CA/993:997, 1/CA/1044:1045 | Minor groove platform | homologous IL_5J7L_043 IL_47078.3 | |
| IL_4V54_225 | 1/CA/998:999, 1/CA/1041:1043 | Single stack bend | homologous IL_5J7L_044 IL_26793.1 | |
| IL_4V54_226 | 1/CA/1048:1050, 1/CA/1208:1209 | Single bulged U | homologous IL_5J7L_046 IL_89505.4 | |
| IL_4V54_227 | 1/CA/1052:1056, 1/CA/1204:1206 | Isolated cWS basepair | homologous IL_4LFB_044 IL_76319.5 | |
| IL_4V54_228 | 1/CA/1057:1058, 1/CA/1199:1203 | Minor groove platform | homologous IL_5J7L_048 IL_95583.2 | |
| IL_4V54_229 | 1/CA/1060:1061, 1/CA/1195:1197 | Single bulged A | geometric IL_5J7L_049 IL_31462.5 | |
| IL_4V54_230 | 1/CA/1061:1063, 1/CA/1193:1195 | Isolated non-canonical cWW pair | homologous IL_5J7L_050 IL_28037.2 | |
| IL_4V54_231 | 1/CA/1124:1128, 1/CA/1144:1149 | No text annotation | homologous IL_5J7L_051 IL_06691.1 | |
| IL_4V54_232 | 1/CA/1129:1132, 1/CA/1142:1143 | Minor groove platform | homologous IL_5J7L_052 IL_15052.4 | |
| IL_4V54_233 | 1/CA/1158:1161, 1/CA/1175:1181 | No text annotation | homologous IL_5J7L_053 IL_42032.1 | |
| IL_4V54_234 | 1/CA/1247:1253, 1/CA/1284:1290 | No text annotation | homologous IL_5J7L_054 IL_09129.2 | |
| IL_4V54_235 | 1/CA/1255:1258, 1/CA/1277:1282 | 180 degree turn | homologous IL_5J7L_055 IL_11344.2 | |
| IL_4V54_236 | 1/CA/1259:1263, 1/CA/1272:1276 | Triple sheared | homologous IL_5J7L_056 IL_17948.2 | |
| IL_4V54_237 | 1/CA/1303:1308, 1/CA/1329:1334 | No text annotation | homologous IL_4LFB_055 IL_85536.2 | |
| IL_4V54_238 | 1/CA/1399:1401, 1/CA/1501:1504 | No text annotation | geometric IL_5J7L_058 IL_61438.4 | |
| IL_4V54_239 | 1/CA/1401:1404, 1/CA/1497:1501 | No text annotation | geometric IL_4V88_464 NA | |
| IL_4V54_240 | 1/CA/1405:1407, 1/CA/1494:1496 | Isolated non-canonical cWW pair | geometric IL_5MWI_004 IL_87907.2 | |
| IL_4V54_241 | 1/CA/1407:1409, 1/CA/1491:1494 | Isolated non-canonical cWW pair | geometric IL_3TD0_005 IL_57744.1 | |
| IL_4V54_242 | 1/CA/1412:1414, 1/CA/1486:1488 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 IL_87907.2 | |
| IL_4V54_243 | 1/CA/1416:1419, 1/CA/1481:1484 | Double sheared | homologous IL_5J7L_062 IL_09705.15 | |
| IL_4V54_244 | 1/CA/1430:1435, 1/CA/1466:1470 | Triple sheared related | homologous IL_5J7L_063 IL_80231.1 | |
| IL_4V54_245 | 1/CA/1440:1442, 1/CA/1460:1461 | Single bulged A | homologous IL_5J7L_064 IL_31462.5 | |
| IL_4V54_246 | 1/CA/1445:1448, 1/CA/1455:1457 | No text annotation | homologous IL_5J7L_065 IL_31531.3 | |
| IL_4V54_247 | 1/DA/17:18, 1/DA/65:67 | Major groove intercalation | homologous IL_5J7L_355 IL_31462.5 | |
| IL_4V54_248 | 1/DA/23:28, 1/DA/56:60 | No text annotation | homologous IL_7A0S_103 IL_18472.4 | |
| IL_4V54_249 | 1/DA/30:31, 1/DA/51:54 | No text annotation | homologous IL_8P9A_366 IL_15052.4 | |
| IL_4V54_250 | 1/DA/34:38, 1/DA/44:48 | Symmetric double minor groove platform | homologous IL_5J7L_358 IL_58103.11 | |
| IL_4V54_251 | 1/DA/71:79, 1/DA/97:105 | Bacterial 5S Loop E | homologous IL_5J7L_359 IL_56455.6 | |
| IL_4V54_252 | 1/DB/24:30, 1/DB/510:516 | Triple sheared with non-canonical cWW | geometric IL_5J7L_245 IL_04021.2 | |
| IL_4V54_253 | 1/DB/36:37, 1/DB/442:444 | Single bulged A | homologous IL_5J7L_246 IL_31462.5 | |
| IL_4V54_254 | 1/DB/43:44, 1/DB/434:436 | Minor groove platform | homologous IL_5J7L_247 IL_51454.2 | |
| IL_4V54_255 | 1/DB/81:85, 1/DB/97:105 | No text annotation | ||
| IL_4V54_256 | 1/DB/183:184, 1/DB/212:214 | Single stack bend | homologous IL_5J7L_249 IL_90729.1 | |
| IL_4V54_257 | 1/DB/188:194, 1/DB/201:208 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_250 IL_04346.10 | |
| IL_4V54_258 | 1/DB/239:245, 1/DB/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5J7L_251 IL_26307.2 | |
| IL_4V54_259 | 1/DB/269:271, 1/DB/366:370 | No text annotation | homologous IL_5J7L_252 IL_47972.1 | |
| IL_4V54_260 | 1/DB/274:281, 1/DB/359:363 | No text annotation | homologous IL_5J7L_253 IL_77870.1 | |
| IL_4V54_261 | 1/DB/293:295, 1/DB/343:347 | No text annotation | homologous IL_4WF9_014 IL_69440.3 | |
| IL_4V54_262 | 1/DB/481:484, 1/DB/496:509 | No text annotation | geometric IL_5J7L_255 IL_81516.2 | |
| IL_4V54_263 | 1/DB/536:539, 1/DB/554:557 | Double sheared | homologous IL_5J7L_256 IL_09705.15 | |
| IL_4V54_264 | 1/DB/564:566, 1/DB/575:577 | Isolated non-canonical cWW pair | geometric IL_4WF9_017 IL_07785.1 | |
| IL_4V54_265 | 1/DB/606:610, 1/DB/618:622 | AAA cross-strand stack | homologous IL_5J7L_258 IL_66798.2 | |
| IL_4V54_266 | 1/DB/672:674, 1/DB/806:808 | No text annotation | geometric IL_7RQB_017 NA | |
| IL_4V54_267 | 1/DB/674:678, 1/DB/799:806 | tHW-tHW cross-strand stack | homologous IL_5J7L_260 IL_54041.2 | |
| IL_4V54_268 | 1/DB/697:698, 1/DB/763:765 | Single bulged A | geometric IL_5J7L_261 IL_31462.5 | |
| IL_4V54_269 | 1/DB/702:703, 1/DB/728:730 | Single bulged G | geometric IL_5J7L_262 IL_00225.13 | |
| IL_4V54_270 | 1/DB/703:707, 1/DB/724:728 | Triple sheared | homologous IL_5J7L_263 IL_50730.2 | |
| IL_4V54_271 | 1/DB/738:740, 1/DB/757:758 | Major groove platform | homologous IL_5J7L_264 IL_48076.6 | |
| IL_4V54_272 | 1/DB/775:777, 1/DB/787:791 | Multiple bulged bases | geometric IL_5J7L_265 IL_06549.2 | |
| IL_4V54_273 | 1/DB/837:838, 1/DB/940:942 | Single stack bend | homologous IL_4WF9_028 IL_90729.1 | |
| IL_4V54_274 | 1/DB/844:848, 1/DB/930:934 | No text annotation | homologous IL_5J7L_399 IL_96236.1 | |
| IL_4V54_275 | 1/DB/850:851, 1/DB/926:928 | Single stack bend | homologous IL_5J7L_269 IL_26793.1 | |
| IL_4V54_276 | 1/DB/856:858, 1/DB/919:921 | Isolated non-canonical cWW pair | geometric IL_4V88_472 NA | |
| IL_4V54_277 | 1/DB/858:862, 1/DB/915:919 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_7RQB_027 NA | |
| IL_4V54_278 | 1/DB/862:863, 1/DB/913:915 | Single bulged G | geometric IL_5J7L_271 IL_00225.13 | |
| IL_4V54_279 | 1/DB/864:868, 1/DB/909:912 | C-loop | homologous IL_5J7L_272 IL_26222.2 | |
| IL_4V54_280 | 1/DB/870:872, 1/DB/905:907 | Isolated non-canonical cWW pair | homologous IL_5J7L_273 IL_28037.2 | |
| IL_4V54_281 | 1/DB/994:996, 1/DB/1159:1160 | Single bulged C | homologous IL_5J7L_276 IL_61258.15 | |
| IL_4V54_282 | 1/DB/998:1002, 1/DB/1153:1157 | UAA/GAN | homologous IL_5J7L_277 IL_38507.2 | |
| IL_4V54_283 | 1/DB/1004:1011, 1/DB/1150:1151 | SSU/LSU pseudoknot | geometric IL_5J7L_278 IL_41203.4 | |
| IL_4V54_284 | 1/DB/1011:1013, 1/DB/1149:1150 | Single bulged U | homologous IL_5J7L_279 IL_89505.4 | |
| IL_4V54_285 | 1/DB/1018:1024, 1/DB/1140:1144 | Kink-turn related | homologous IL_4WF9_039 IL_57188.5 | |
| IL_4V54_286 | 1/DB/1024:1030, 1/DB/1124:1140 | No text annotation | geometric IL_5J7L_281 IL_50715.3 | |
| IL_4V54_287 | 1/DB/1031:1034, 1/DB/1121:1123 | Isolated non-canonical cWW pair | homologous IL_5J7L_282 IL_57744.1 | |
| IL_4V54_288 | 1/DB/1038:1041, 1/DB/1114:1117 | Tandem non-canonical cWW pairs | homologous IL_5J7L_283 IL_85033.2 | |
| IL_4V54_289 | 1/DB/1043:1051, 1/DB/1108:1112 | Kink-turn | homologous IL_5J7L_284 IL_99692.2 | |
| IL_4V54_290 | 1/DB/1059:1062, 1/DB/1076:1079 | No text annotation | homologous IL_6PRV_001 IL_92446.2 | |
| IL_4V54_291 | 1/DB/1087:1090, 1/DB/1101:1102 | Major groove platform | geometric IL_4V9F_044 IL_48076.6 | |
| IL_4V54_292 | 1/DB/1196:1198, 1/DB/1247:1250 | Isolated cWS basepair | homologous IL_5J7L_286 IL_42997.3 | |
| IL_4V54_293 | 1/DB/1202:1206, 1/DB/1240:1243 | No text annotation | homologous IL_5J7L_287 IL_91920.1 | |
| IL_4V54_294 | 1/DB/1208:1215, 1/DB/1234:1238 | Kink-turn | homologous IL_7RQB_047 NA | |
| IL_4V54_295 | 1/DB/1262:1269, 1/DB/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_289 IL_04346.10 | |
| IL_4V54_296 | 1/DB/1310:1313, 1/DB/1603:1604 | Major groove platform; stack outside cWW | homologous IL_7RQB_050 NA | |
| IL_4V54_297 | 1/DB/1319:1323, 1/DB/1331:1333 | C-loop | homologous IL_5J7L_291 IL_63596.11 | |
| IL_4V54_298 | 1/DB/1351:1355, 1/DB/1376:1380 | UAA/GAN | homologous IL_5J7L_292 IL_89021.2 | |
| IL_4V54_299 | 1/DB/1357:1361, 1/DB/1370:1374 | tSH-tHW-tHS | homologous IL_5J7L_293 IL_17136.7 | |
| IL_4V54_300 | 1/DB/1415:1416, 1/DB/1582:1587 | No text annotation | homologous IL_5J7L_294 IL_87211.1 | |
| IL_4V54_301 | 1/DB/1417:1421, 1/DB/1577:1581 | UAA/GAN | homologous IL_7RQB_055 NA | |
| IL_4V54_302 | 1/DB/1432:1435, 1/DB/1557:1561 | Tandem non-canonical cWW pairs | homologous IL_5J7L_296 IL_58112.2 | |
| IL_4V54_303 | 1/DB/1437:1440, 1/DB/1551:1555 | No text annotation | ||
| IL_4V54_304 | 1/DB/1468:1471, 1/DB/1520:1524 | No text annotation | homologous IL_5J7L_299 IL_68574.4 | |
| IL_4V54_305 | 1/DB/1474:1478, 1/DB/1513:1517 | tSH-tHW-tHS | homologous IL_5J7L_300 IL_38862.4 | |
| IL_4V54_306 | 1/DB/1481:1482, 1/DB/1507:1510 | No text annotation | ||
| IL_4V54_307 | 1/DB/1489:1491, 1/DB/1499:1500 | Single bulged A | homologous IL_5J7L_302 IL_31462.5 | |
| IL_4V54_308 | 1/DB/1526:1529, 1/DB/1542:1546 | UAA/GAN variation | homologous IL_5J7L_303 IL_23774.1 | |
| IL_4V54_309 | 1/DB/1651:1656, 1/DB/2004:2006 | No text annotation | homologous IL_5J7L_304 IL_12566.4 | |
| IL_4V54_310 | 1/DB/1663:1665, 1/DB/1995:1997 | Isolated tWW turn | homologous IL_4WF9_063 IL_67095.2 | |
| IL_4V54_311 | 1/DB/1666:1669, 1/DB/1993:1994 | Major groove platform; stack outside cWW | homologous IL_7RQB_066 NA | |
| IL_4V54_361 | 1/DB/1666:1674, 1/DB/1990:1994 | No text annotation | homologous IL_5J7L_386 IL_22854.4 | |
| IL_4V54_312 | 1/DB/1669:1674, 1/DB/1990:1993 | Intercalated tWH | geometric IL_5J7L_307 IL_76758.2 | |
| IL_4V54_313 | 1/DB/1686:1691, 1/DB/1696:1702 | tSH-tSH-tHH-tHS | geometric IL_5J7L_308 IL_47346.2 | |
| IL_4V54_314 | 1/DB/1712:1718, 1/DB/1742:1746 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_5J7L_309 IL_88269.4 | |
| IL_4V54_315 | 1/DB/1720:1724, 1/DB/1736:1740 | Triple sheared | homologous IL_5J7L_310 IL_50730.2 | |
| IL_4V54_316 | 1/DB/1727:1728, 1/DB/1731:1733 | Single bulged C | geometric IL_5J7L_311 IL_61258.15 | |
| IL_4V54_317 | 1/DB/1770:1771, 1/DB/1980:1982 | Single bulged A | homologous IL_5J7L_312 IL_31462.5 | |
| IL_4V54_318 | 1/DB/1798:1804, 1/DB/1813:1821 | Kink-turn related | homologous IL_5J7L_313 IL_17069.5 | |
| IL_4V54_319 | 1/DB/1837:1840, 1/DB/1902:1903 | Minor groove platform, major groove intercalation | homologous IL_5J7L_314 IL_95583.2 | |
| IL_4V54_320 | 1/DB/1841:1842, 1/DB/1898:1901 | Major groove intercalation | homologous IL_5J7L_315 IL_82107.4 | |
| IL_4V54_321 | 1/DB/1846:1849, 1/DB/1893:1894 | Minor groove platform | homologous IL_7RQB_073 NA | |
| IL_4V54_362 | 1/DB/1851:1860, 1/DB/1882:1891 | No text annotation | homologous IL_5J7L_387 IL_61249.1 | |
| IL_4V54_322 | 1/DB/1864:1867, 1/DB/1874:1878 | UAA/GAN variation | homologous IL_5J7L_317 IL_77691.5 | |
| IL_4V54_323 | 1/DB/1933:1934, 1/DB/1964:1967 | Bulged stacked bases | homologous IL_5J7L_318 IL_22551.3 | |
| IL_4V54_324 | 1/DB/1934:1945, 1/DB/1961:1964 | No text annotation | geometric IL_7A0S_072 IL_04332.3 | |
| IL_4V54_325 | 1/DB/2050:2052, 1/DB/2617:2618 | Major groove platform | homologous IL_5J7L_320 IL_48076.6 | |
| IL_4V54_326 | 1/DB/2054:2056, 1/DB/2612:2615 | No text annotation | homologous IL_5J7L_321 IL_83389.2 | |
| IL_4V54_327 | 1/DB/2067:2069, 1/DB/2442:2443 | Single bulged U | homologous IL_7A0S_075 IL_89505.4 | |
| IL_4V54_328 | 1/DB/2070:2071, 1/DB/2438:2441 | Minor groove platform | homologous IL_4WF9_081 IL_51454.2 | |
| IL_4V54_329 | 1/DB/2081:2083, 1/DB/2236:2239 | Isolated tHS basepair with bulges | homologous IL_5J7L_325 IL_85599.2 | |
| IL_4V54_330 | 1/DB/2085:2087, 1/DB/2232:2234 | Isolated non-canonical cWW pair | homologous IL_5J7L_326 IL_28037.2 | |
| IL_4V54_331 | 1/DB/2103:2105, 1/DB/2184:2186 | Stack and bulge | geometric IL_2ET8_001 IL_31737.3 | |
| IL_4V54_332 | 1/DB/2108:2110, 1/DB/2179:2181 | No text annotation | ||
| IL_4V54_333 | 1/DB/2202:2204, 1/DB/2220:2221 | Single bulged U | homologous IL_5J7L_331 IL_89505.4 | |
| IL_4V54_334 | 1/DB/2297:2299, 1/DB/2317:2321 | No text annotation | homologous IL_5J7L_332 IL_61476.2 | |
| IL_4V54_335 | 1/DB/2350:2353, 1/DB/2364:2367 | Double sheared | homologous IL_7RQB_089 NA | |
| IL_4V54_336 | 1/DB/2401:2403, 1/DB/2414:2415 | No text annotation | ||
| IL_4V54_337 | 1/DB/2453:2454, 1/DB/2498:2500 | Single stack bend | homologous IL_4WF9_089 IL_26793.1 | |
| IL_4V54_338 | 1/DB/2454:2455, 1/DB/2496:2498 | Major groove platform | geometric IL_4WF9_090 IL_48076.6 | |
| IL_4V54_339 | 1/DB/2457:2459, 1/DB/2493:2494 | Major groove platform | geometric IL_5TBW_104 NA | |
| IL_4V54_340 | 1/DB/2459:2461, 1/DB/2489:2493 | Major groove minor groove platform with extra cWW | homologous IL_5J7L_337 IL_51387.2 | |
| IL_4V54_341 | 1/DB/2466:2470, 1/DB/2480:2484 | Triple sheared | homologous IL_5J7L_338 IL_17948.2 | |
| IL_4V54_342 | 1/DB/2507:2508, 1/DB/2580:2582 | Major groove platform | homologous IL_4WF9_094 IL_07039.3 | |
| IL_4V54_343 | 1/DB/2510:2512, 1/DB/2574:2578 | Isolated non-canonical cWW with bulges | homologous IL_5J7L_340 IL_07785.1 | |
| IL_4V54_344 | 1/DB/2512:2513, 1/DB/2571:2574 | No text annotation | geometric IL_5J7L_341 IL_42626.2 | |
| IL_4V54_345 | 1/DB/2522:2523, 1/DB/2540:2543 | Major groove platform with intercalation | homologous IL_5J7L_342 IL_02555.1 | |
| IL_4V54_346 | 1/DB/2591:2592, 1/DB/2601:2603 | Single bulged A | homologous IL_5J7L_344 IL_31462.5 | |
| IL_4V54_347 | 1/DB/2636:2640, 1/DB/2774:2782 | tSH-tHS-tHW | homologous IL_5J7L_345 IL_04638.3 | |
| IL_4V54_348 | 1/DB/2652:2658, 1/DB/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_5J7L_346 IL_16458.4 | |
| IL_4V54_349 | 1/DB/2680:2684, 1/DB/2725:2727 | C-loop | homologous IL_5J7L_347 IL_63596.11 | |
| IL_4V54_350 | 1/DB/2687:2691, 1/DB/2718:2722 | No text annotation | homologous IL_5J7L_348 IL_23774.1 | |
| IL_4V54_351 | 1/DB/2695:2696, 1/DB/2711:2714 | Multiple bulged bases | homologous IL_5J7L_349 IL_42626.2 | |
| IL_4V54_352 | 1/DB/2737:2742, 1/DB/2762:2767 | UAA/GAN with extra cWW | homologous IL_5J7L_350 IL_49767.8 | |
| IL_4V54_353 | 1/DB/2806:2811, 1/DB/2889:2892 | No text annotation | geometric IL_5J7L_351 IL_29471.1 | |
| IL_4V54_354 | 1/DB/2838:2839, 1/DB/2878:2880 | Major groove intercalation | homologous IL_5J7L_352 IL_66635.5 | |
| IL_4V54_355 | 1/DB/2843:2846, 1/DB/2870:2874 | Multiple bulged bases with non-canonical cWW | homologous IL_5J7L_353 IL_64231.5 | |
| IL_4V54_356 | 1/DB/2847:2852, 1/DB/2865:2869 | No text annotation | homologous IL_7A0S_101 IL_70411.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4V54_037 | No text annotation | ||
| IL_4V54_215 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_4V54_001 | 1/AA/46:47, 1/AA/361:367, 1/AA/393:395 | No text annotation | homologous J3_5J7L_001 J3_67856.4 | |
| J3_4V54_053 | 1/AA/46:52, 1/AA/359:367, 1/AA/393:395 | No text annotation | homologous J3_5J7L_050 J3_46317.4 | |
| J3_4V54_002 | 1/AA/586:588, 1/AA/651:654, 1/AA/754:755 | No text annotation | homologous J3_5J7L_002 J3_56052.5 | |
| J3_4V54_054 | 1/AA/586:588, 1/AA/651:655, 1/AA/751:755 | No text annotation | homologous J3_5J7L_051 J3_17385.4 | |
| J3_4V54_003 | 1/AA/672:673, 1/AA/717:725, 1/AA/732:734 | No text annotation | homologous J3_5J7L_003 J3_11934.4 | |
| J3_4V54_004 | 1/AA/826:829, 1/AA/857:861, 1/AA/868:874 | No text annotation | homologous J3_5J7L_004 J3_85054.4 | |
| J3_4V54_005 | 1/AA/936:939, 1/AA/1344:1350, 1/AA/1372:1379 | No text annotation | homologous J3_4LFB_002 J3_25303.4 | |
| J3_4V54_006 | 1/AA/943:946, 1/AA/1235:1237, 1/AA/1337:1340 | No text annotation | homologous J3_5J7L_005 J3_52655.4 | |
| J3_4V54_007 | 1/AA/955:962, 1/AA/973:984, 1/AA/1221:1225 | No text annotation | homologous J3_4LFB_004 J3_83516.4 | |
| J3_4V54_008 | 1/AA/990:993, 1/AA/1045:1047, 1/AA/1210:1215 | No text annotation | homologous J3_4LFB_005 J3_82572.1 | |
| J3_4V54_055 | 1/AA/990:997, 1/AA/1044:1047, 1/AA/1210:1215 | No text annotation | homologous J3_5J7L_053 J3_76475.2 | |
| J3_4V54_009 | 1/AA/1003:1006, 1/AA/1023:1027, 1/AA/1034:1037 | No text annotation | ||
| J3_4V54_010 | 1/AA/1063:1068, 1/AA/1107:1113, 1/AA/1187:1193 | No text annotation | homologous J3_5J7L_008 J3_08394.3 | |
| J3_4V54_056 | 1/AA/1073:1074, 1/AA/1083:1086, 1/AA/1099:1102 | No text annotation | homologous J3_4LFB_017 J3_79369.1 | |
| J3_4V54_012 | 1/AA/1116:1118, 1/AA/1155:1158, 1/AA/1181:1184 | No text annotation | homologous J3_5J7L_010 J3_82365.4 | |
| J3_4V54_057 | 1/AA/1116:1118, 1/AA/1155:1161, 1/AA/1175:1184 | No text annotation | homologous J3_5J7L_054 J3_17791.2 | |
| J3_4V54_013 | 1/AA/1237:1241, 1/AA/1296:1303, 1/AA/1334:1337 | No text annotation | homologous J3_4LFB_009 J3_37047.6 | |
| J3_4V54_014 | 1/BA/10:16, 1/BA/68:70, 1/BA/106:110 | No text annotation | homologous J3_5J7L_049 J3_89095.1 | |
| J3_4V54_015 | 1/BB/30:31, 1/BB/474:481, 1/BB/509:510 | No text annotation | homologous J3_7RQB_001 NA | |
| J3_4V54_058 | 1/BB/30:31, 1/BB/474:484, 1/BB/496:510 | No text annotation | homologous J3_5J7L_066 J3_92134.2 | |
| J3_4V54_059 | 1/BB/32:35, 1/BB/445:461, 1/BB/468:473 | No text annotation | homologous J3_5J7L_067 J3_30040.2 | |
| J3_4V54_016 | 1/BB/56:57, 1/BB/70:76, 1/BB/110:114 | No text annotation | homologous J3_5J7L_037 J3_35667.2 | |
| J3_4V54_017 | 1/BB/683:689, 1/BB/773:775, 1/BB/791:794 | No text annotation | homologous J3_5J7L_038 J3_64189.2 | |
| J3_4V54_018 | 1/BB/698:700, 1/BB/732:736, 1/BB/760:763 | No text annotation | homologous J3_5J7L_039 J3_44724.7 | |
| J3_4V54_019 | 1/BB/1055:1057, 1/BB/1081:1087, 1/BB/1102:1104 | No text annotation | homologous J3_6PRV_001 J3_28621.5 | |
| J3_4V54_020 | 1/BB/1298:1303, 1/BB/1625:1627, 1/BB/1639:1642 | No text annotation | homologous J3_5J7L_041 J3_32852.6 | |
| J3_4V54_021 | 1/BB/1306:1309, 1/BB/1605:1611, 1/BB/1620:1622 | No text annotation | homologous J3_7A0S_007 J3_71677.1 | |
| J3_4V54_060 | 1/BB/1344:1350, 1/BB/1381:1385, 1/BB/1402:1403 | No text annotation | ||
| J3_4V54_061 | 1/BB/1424:1429, 1/BB/1564:1565, 1/BB/1568:1574 | No text annotation | homologous J3_5J7L_069 J3_34864.2 | |
| J3_4V54_022 | 1/BB/2091:2093, 1/BB/2196:2200, 1/BB/2223:2228 | Kink-turn in J3 | homologous J3_5J7L_044 J3_89368.5 | |
| J3_4V54_062 | 1/BB/2282:2284, 1/BB/2384:2395, 1/BB/2421:2427 | No text annotation | homologous J3_5J7L_070 J3_20992.1 | |
| J3_4V54_023 | 1/BB/2295:2297, 1/BB/2321:2323, 1/BB/2332:2337 | No text annotation | homologous J3_5J7L_045 J3_61124.2 | |
| J3_4V54_024 | 1/BB/2517:2520, 1/BB/2545:2547, 1/BB/2561:2567 | No text annotation | homologous J3_5J7L_046 J3_32601.5 | |
| J3_4V54_025 | 1/BB/2789:2791, 1/BB/2805:2806, 1/BB/2892:2894 | No text annotation | homologous J3_5J7L_047 J3_30104.1 | |
| J3_4V54_026 | 1/BB/2812:2815, 1/BB/2831:2836, 1/BB/2882:2888 | No text annotation | homologous J3_5J7L_048 J3_64069.1 | |
| J3_4V54_027 | 1/CA/46:47, 1/CA/361:367, 1/CA/393:395 | No text annotation | homologous J3_5J7L_001 J3_67856.4 | |
| J3_4V54_063 | 1/CA/46:52, 1/CA/359:367, 1/CA/393:395 | No text annotation | homologous J3_5J7L_050 J3_46317.4 | |
| J3_4V54_028 | 1/CA/586:588, 1/CA/651:654, 1/CA/754:755 | No text annotation | homologous J3_5J7L_002 J3_56052.5 | |
| J3_4V54_064 | 1/CA/586:588, 1/CA/651:655, 1/CA/751:755 | No text annotation | homologous J3_5J7L_051 J3_17385.4 | |
| J3_4V54_029 | 1/CA/672:673, 1/CA/717:725, 1/CA/732:734 | No text annotation | homologous J3_5J7L_003 J3_11934.4 | |
| J3_4V54_030 | 1/CA/826:829, 1/CA/857:861, 1/CA/868:874 | No text annotation | homologous J3_5J7L_004 J3_85054.4 | |
| J3_4V54_031 | 1/CA/936:939, 1/CA/1344:1350, 1/CA/1372:1379 | No text annotation | homologous J3_4LFB_002 J3_25303.4 | |
| J3_4V54_032 | 1/CA/943:946, 1/CA/1235:1237, 1/CA/1337:1340 | No text annotation | homologous J3_5J7L_005 J3_52655.4 | |
| J3_4V54_033 | 1/CA/955:962, 1/CA/973:984, 1/CA/1221:1225 | No text annotation | homologous J3_4LFB_004 J3_83516.4 | |
| J3_4V54_034 | 1/CA/990:993, 1/CA/1045:1047, 1/CA/1210:1215 | No text annotation | homologous J3_4LFB_005 J3_82572.1 | |
| J3_4V54_065 | 1/CA/990:997, 1/CA/1044:1047, 1/CA/1210:1215 | No text annotation | homologous J3_5J7L_053 J3_76475.2 | |
| J3_4V54_035 | 1/CA/1003:1006, 1/CA/1023:1027, 1/CA/1034:1037 | No text annotation | ||
| J3_4V54_036 | 1/CA/1063:1068, 1/CA/1107:1113, 1/CA/1187:1193 | No text annotation | homologous J3_5J7L_008 J3_08394.3 | |
| J3_4V54_066 | 1/CA/1073:1074, 1/CA/1083:1086, 1/CA/1099:1102 | No text annotation | homologous J3_4LFB_017 J3_79369.1 | |
| J3_4V54_038 | 1/CA/1116:1118, 1/CA/1155:1158, 1/CA/1181:1184 | No text annotation | homologous J3_5J7L_010 J3_82365.4 | |
| J3_4V54_067 | 1/CA/1116:1118, 1/CA/1155:1161, 1/CA/1175:1184 | No text annotation | homologous J3_5J7L_054 J3_17791.2 | |
| J3_4V54_039 | 1/CA/1237:1241, 1/CA/1296:1303, 1/CA/1334:1337 | No text annotation | homologous J3_4LFB_009 J3_37047.6 | |
| J3_4V54_040 | 1/DA/10:16, 1/DA/68:70, 1/DA/106:110 | No text annotation | homologous J3_5J7L_049 J3_89095.1 | |
| J3_4V54_041 | 1/DB/30:31, 1/DB/474:481, 1/DB/509:510 | No text annotation | homologous J3_7RQB_001 NA | |
| J3_4V54_068 | 1/DB/30:31, 1/DB/474:484, 1/DB/496:510 | No text annotation | homologous J3_5J7L_066 J3_92134.2 | |
| J3_4V54_069 | 1/DB/32:35, 1/DB/445:461, 1/DB/468:473 | No text annotation | homologous J3_5J7L_067 J3_30040.2 | |
| J3_4V54_042 | 1/DB/56:57, 1/DB/70:76, 1/DB/110:114 | No text annotation | homologous J3_5J7L_037 J3_35667.2 | |
| J3_4V54_043 | 1/DB/683:689, 1/DB/773:775, 1/DB/791:794 | No text annotation | homologous J3_5J7L_038 J3_64189.2 | |
| J3_4V54_044 | 1/DB/698:700, 1/DB/732:736, 1/DB/760:763 | No text annotation | homologous J3_5J7L_039 J3_44724.7 | |
| J3_4V54_045 | 1/DB/1055:1057, 1/DB/1081:1087, 1/DB/1102:1104 | No text annotation | homologous J3_6PRV_001 J3_28621.5 | |
| J3_4V54_046 | 1/DB/1298:1303, 1/DB/1625:1627, 1/DB/1639:1642 | No text annotation | homologous J3_5J7L_041 J3_32852.6 | |
| J3_4V54_047 | 1/DB/1306:1309, 1/DB/1605:1611, 1/DB/1620:1622 | No text annotation | homologous J3_7A0S_007 J3_71677.1 | |
| J3_4V54_070 | 1/DB/1344:1350, 1/DB/1381:1385, 1/DB/1402:1403 | No text annotation | ||
| J3_4V54_071 | 1/DB/1424:1429, 1/DB/1564:1565, 1/DB/1568:1574 | No text annotation | homologous J3_5J7L_069 J3_34864.2 | |
| J3_4V54_048 | 1/DB/2091:2093, 1/DB/2196:2200, 1/DB/2223:2228 | Kink-turn in J3 | homologous J3_5J7L_044 J3_89368.5 | |
| J3_4V54_072 | 1/DB/2282:2284, 1/DB/2384:2395, 1/DB/2421:2427 | No text annotation | homologous J3_5J7L_070 J3_20992.1 | |
| J3_4V54_049 | 1/DB/2295:2297, 1/DB/2321:2323, 1/DB/2332:2337 | No text annotation | homologous J3_5J7L_045 J3_61124.2 | |
| J3_4V54_050 | 1/DB/2517:2520, 1/DB/2545:2547, 1/DB/2561:2567 | No text annotation | homologous J3_5J7L_046 J3_32601.5 | |
| J3_4V54_051 | 1/DB/2789:2791, 1/DB/2805:2806, 1/DB/2892:2894 | No text annotation | homologous J3_5J7L_047 J3_30104.1 | |
| J3_4V54_052 | 1/DB/2812:2815, 1/DB/2831:2836, 1/DB/2882:2888 | No text annotation | homologous J3_5J7L_048 J3_64069.1 | |
| J4_4V54_001 | 1/AA/115:122, 1/AA/239:240, 1/AA/286:289, 1/AA/311:312 | No text annotation | homologous J4_6CZR_027 NA | |
| J4_4V54_002 | 1/AA/142:144, 1/AA/178:184, 1/AA/193:198, 1/AA/219:221 | No text annotation | ||
| J4_4V54_003 | 1/AA/575:577, 1/AA/764:769, 1/AA/810:821, 1/AA/879:880 | No text annotation | homologous J4_5J7L_003 J4_61885.6 | |
| J4_4V54_004 | 1/BB/268:269, 1/BB/370:375, 1/BB/399:406, 1/BB/421:424 | No text annotation | homologous J4_5J7L_018 J4_45801.6 | |
| J4_4V54_005 | 1/BB/297:301, 1/BB/316:319, 1/BB/323:325, 1/BB/337:341 | No text annotation | homologous J4_5J7L_019 J4_71729.5 | |
| J4_4V54_006 | 1/BB/601:604, 1/BB/624:628, 1/BB/635:638, 1/BB/650:656 | No text annotation | homologous J4_5J7L_020 J4_60168.1 | |
| J4_4V54_007 | 1/BB/1270:1276, 1/BB/1294:1295, 1/BB/1645:1648, 1/BB/2009:2010 | No text annotation | homologous J4_5J7L_021 J4_64571.5 | |
| J4_4V54_008 | 1/BB/1310:1314, 1/BB/1338:1343, 1/BB/1404:1405, 1/BB/1597:1604 | No text annotation | homologous J4_5J7L_022 J4_69051.6 | |
| J4_4V54_009 | 1/BB/1313:1314, 1/BB/1338:1343, 1/BB/1404:1405, 1/BB/1597:1603 | No text annotation | homologous J4_5J7L_023 J4_10313.5 | |
| J4_4V54_010 | 1/BB/1444:1445, 1/BB/1466:1467, 1/BB/1525:1526, 1/BB/1546:1547 | No text annotation | homologous J4_5J7L_024 J4_24280.2 | |
| J4_4V54_011 | 1/BB/1772:1776, 1/BB/1788:1792, 1/BB/1827:1830, 1/BB/1975:1979 | No text annotation | homologous J4_5J7L_025 J4_61477.5 | |
| J4_4V54_012 | 1/BB/1833:1835, 1/BB/1905:1906, 1/BB/1924:1933, 1/BB/1967:1972 | No text annotation | homologous J4_9DFE_008 J4_93343.1 | |
| J4_4V54_013 | 1/BB/2285:2289, 1/BB/2343:2347, 1/BB/2370:2372, 1/BB/2381:2383 | No text annotation | homologous J4_5J7L_027 J4_04930.6 | |
| J4_4V54_014 | 1/BB/2643:2646, 1/BB/2674:2676, 1/BB/2731:2735, 1/BB/2769:2771 | No text annotation | homologous J4_5J7L_028 J4_77044.4 | |
| J4_4V54_015 | 1/CA/115:122, 1/CA/239:240, 1/CA/286:289, 1/CA/311:312 | No text annotation | homologous J4_6CZR_027 NA | |
| J4_4V54_016 | 1/CA/142:144, 1/CA/178:184, 1/CA/193:198, 1/CA/219:221 | No text annotation | ||
| J4_4V54_017 | 1/CA/575:577, 1/CA/764:769, 1/CA/810:821, 1/CA/879:880 | No text annotation | homologous J4_5J7L_003 J4_61885.6 | |
| J4_4V54_018 | 1/DB/268:269, 1/DB/370:375, 1/DB/399:406, 1/DB/421:424 | No text annotation | homologous J4_5J7L_018 J4_45801.6 | |
| J4_4V54_019 | 1/DB/297:301, 1/DB/316:319, 1/DB/323:325, 1/DB/337:341 | No text annotation | homologous J4_5J7L_019 J4_71729.5 | |
| J4_4V54_020 | 1/DB/601:604, 1/DB/624:628, 1/DB/635:638, 1/DB/650:656 | No text annotation | homologous J4_5J7L_020 J4_60168.1 | |
| J4_4V54_021 | 1/DB/1270:1276, 1/DB/1294:1295, 1/DB/1645:1648, 1/DB/2009:2010 | No text annotation | homologous J4_5J7L_021 J4_64571.5 | |
| J4_4V54_022 | 1/DB/1310:1314, 1/DB/1338:1343, 1/DB/1404:1405, 1/DB/1597:1604 | No text annotation | homologous J4_5J7L_022 J4_69051.6 | |
| J4_4V54_023 | 1/DB/1313:1314, 1/DB/1338:1343, 1/DB/1404:1405, 1/DB/1597:1603 | No text annotation | homologous J4_5J7L_023 J4_10313.5 | |
| J4_4V54_024 | 1/DB/1444:1445, 1/DB/1466:1467, 1/DB/1525:1526, 1/DB/1546:1547 | No text annotation | homologous J4_5J7L_024 J4_24280.2 | |
| J4_4V54_025 | 1/DB/1772:1776, 1/DB/1788:1792, 1/DB/1827:1830, 1/DB/1975:1979 | No text annotation | homologous J4_5J7L_025 J4_61477.5 | |
| J4_4V54_026 | 1/DB/1833:1835, 1/DB/1905:1906, 1/DB/1924:1933, 1/DB/1967:1972 | No text annotation | homologous J4_9DFE_008 J4_93343.1 | |
| J4_4V54_027 | 1/DB/2285:2289, 1/DB/2343:2347, 1/DB/2370:2372, 1/DB/2381:2383 | No text annotation | homologous J4_5J7L_027 J4_04930.6 | |
| J4_4V54_028 | 1/DB/2643:2646, 1/DB/2674:2676, 1/DB/2731:2735, 1/DB/2769:2771 | No text annotation | homologous J4_5J7L_028 J4_77044.4 | |
| J5_4V54_001 | 1/AA/36:39, 1/AA/403:406, 1/AA/436:440, 1/AA/497:500, 1/AA/545:548 | No text annotation | homologous J5_5J7L_001 J5_92941.1 | |
| J5_4V54_002 | 1/AA/36:39, 1/AA/403:406, 1/AA/436:442, 1/AA/492:500, 1/AA/545:548 | No text annotation | homologous J5_5J7L_002 J5_67416.1 | |
| J5_4V54_003 | 1/AA/58:61, 1/AA/106:113, 1/AA/314:316, 1/AA/337:339, 1/AA/350:354 | No text annotation | homologous J5_5J7L_003 J5_59910.6 | |
| J5_4V54_004 | 1/BB/47:54, 1/BB/116:121, 1/BB/130:131, 1/BB/148:150, 1/BB/176:178 | No text annotation | homologous J5_5J7L_013 J5_01737.2 | |
| J5_4V54_005 | 1/BB/531:533, 1/BB/560:564, 1/BB/577:579, 1/BB/1261:1262, 1/BB/2017:2018 | No text annotation | homologous J5_5J7L_014 J5_43153.5 | |
| J5_4V54_006 | 1/BB/584:589, 1/BB/668:671, 1/BB/809:812, 1/BB/1195:1196, 1/BB/1250:1256 | No text annotation | homologous J5_5J7L_015 J5_74302.5 | |
| J5_4V54_007 | 1/BB/1674:1682, 1/BB/1706:1707, 1/BB/1751:1752, 1/BB/1756:1764, 1/BB/1988:1990 | No text annotation | homologous J5_5J7L_016 J5_62523.6 | |
| J5_4V54_008 | 1/BB/2057:2064, 1/BB/2446:2453, 1/BB/2500:2506, 1/BB/2583:2588, 1/BB/2606:2611 | No text annotation | ||
| J5_4V54_009 | 1/BB/2074:2077, 1/BB/2243:2246, 1/BB/2258:2259, 1/BB/2281:2282, 1/BB/2427:2435 | No text annotation | homologous J5_9DFE_007 J5_39529.1 | |
| J5_4V54_010 | 1/CA/36:39, 1/CA/403:406, 1/CA/436:440, 1/CA/497:500, 1/CA/545:548 | No text annotation | homologous J5_5J7L_001 J5_92941.1 | |
| J5_4V54_011 | 1/CA/36:39, 1/CA/403:406, 1/CA/436:442, 1/CA/492:500, 1/CA/545:548 | No text annotation | homologous J5_5J7L_002 J5_67416.1 | |
| J5_4V54_012 | 1/CA/58:61, 1/CA/106:113, 1/CA/314:316, 1/CA/337:339, 1/CA/350:354 | No text annotation | homologous J5_5J7L_003 J5_59910.6 | |
| J5_4V54_013 | 1/DB/47:54, 1/DB/116:121, 1/DB/130:131, 1/DB/148:150, 1/DB/176:178 | No text annotation | homologous J5_5J7L_013 J5_01737.2 | |
| J5_4V54_014 | 1/DB/531:533, 1/DB/560:564, 1/DB/577:579, 1/DB/1261:1262, 1/DB/2017:2018 | No text annotation | homologous J5_5J7L_014 J5_43153.5 | |
| J5_4V54_015 | 1/DB/584:589, 1/DB/668:671, 1/DB/809:812, 1/DB/1195:1196, 1/DB/1250:1256 | No text annotation | homologous J5_5J7L_015 J5_74302.5 | |
| J5_4V54_016 | 1/DB/1674:1682, 1/DB/1706:1707, 1/DB/1751:1752, 1/DB/1756:1764, 1/DB/1988:1990 | No text annotation | homologous J5_5J7L_016 J5_62523.6 | |
| J5_4V54_017 | 1/DB/2057:2064, 1/DB/2446:2453, 1/DB/2500:2506, 1/DB/2583:2588, 1/DB/2606:2611 | No text annotation | ||
| J5_4V54_018 | 1/DB/2074:2077, 1/DB/2243:2246, 1/DB/2258:2259, 1/DB/2281:2282, 1/DB/2427:2435 | No text annotation | homologous J5_9DFE_007 J5_39529.1 | |
| J6_4V54_001 | 1/BB/45:46, 1/BB/179:183, 1/BB/214:224, 1/BB/231:235, 1/BB/262:266, 1/BB/426:433 | No text annotation | ||
| J6_4V54_002 | 1/BB/2074:2077, 1/BB/2243:2246, 1/BB/2258:2259, 1/BB/2281:2284, 1/BB/2384:2395, 1/BB/2421:2435 | No text annotation | ||
| J6_4V54_003 | 1/DB/45:46, 1/DB/179:183, 1/DB/214:224, 1/DB/231:235, 1/DB/262:266, 1/DB/426:433 | No text annotation | ||
| J6_4V54_004 | 1/DB/2074:2077, 1/DB/2243:2246, 1/DB/2258:2259, 1/DB/2281:2284, 1/DB/2384:2395, 1/DB/2421:2435 | No text annotation | ||
| J7_4V54_001 | 1/BB/8:15, 1/BB/525:531, 1/BB/2018:2023, 1/BB/2040:2043, 1/BB/2625:2630, 1/BB/2788:2789, 1/BB/2894:2895 | No text annotation | ||
| J7_4V54_002 | 1/BB/817:822, 1/BB/835:837, 1/BB/942:946, 1/BB/971:976, 1/BB/987:991, 1/BB/1163:1164, 1/BB/1185:1190 | No text annotation | ||
| J7_4V54_003 | 1/DB/8:15, 1/DB/525:531, 1/DB/2018:2023, 1/DB/2040:2043, 1/DB/2625:2630, 1/DB/2788:2789, 1/DB/2894:2895 | No text annotation | ||
| J7_4V54_004 | 1/DB/817:822, 1/DB/835:837, 1/DB/942:946, 1/DB/971:976, 1/DB/987:991, 1/DB/1163:1164, 1/DB/1185:1190 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4V54_011 | No text annotation | ||
| J3_4V54_037 | No text annotation |
Coloring options: