Valid loops

#loop idlocationannotation
(mapped to, source)
motif group
(similar to)
1/AA/12:22NANA
1/AA/83:86NANA
1/AA/158:163NANA
1/AA/186:191NANA
1/AA/259:267NANA
1/AA/296:301NANA
1/AA/320:333NANA
1/AA/342:347NANA
1/AA/379:384NANA
1/AA/419:424NANA
1/AA/462:470NANA
1/AA/522:527NANA
1/AA/617:623NANA
1/AA/689:698NANA
1/AA/726:731NANA
1/AA/786:796NANA
1/AA/840:846NANA
1/AA/862:867NANA
1/AA/897:902NANA
1/AA/963:972NANA
1/AA/1012:1017NANA
1/AA/1028:1033NANA
1/AA/1089:1096NANA
1/AA/1134:1140NANA
1/AA/1165:1171NANA
1/AA/1265:1270NANA
1/AA/1314:1323NANA
1/AA/1356:1366NANA
1/AA/1449:1454NANA
1/AA/1515:1520NANA
1/BA/38:44NANA
1/BA/86:90NANA
1/BB/59:68
homologous
HL_7RQB_001
NA

HL_29414.1*
1/BB/87:95
geometric
HL_5J7L_135
NA

HL_17926.5*
1/BB/123:128
homologous
HL_7RQB_003
NA

HL_62869.3*
1/BB/158:168
geometric
HL_5J7L_138
NA

HL_81820.1*
1/BB/194:201
homologous
HL_7RQB_006
NA

HL_23481.5*
1/BB/225:230
homologous
HL_7RQB_007
NA

HL_06569.2*
1/BB/246:252
homologous
HL_7RQB_008
NA

HL_67216.5*
1/BB/305:312
homologous
HL_7RQB_010
NA

HL_68493.6*
1/BB/319:323
homologous
HL_7RQB_011
NA

HL_98557.5*
1/BB/327:335
homologous
HL_7RQB_012
NA

HL_08002.6*
1/BB/382:392
homologous
HL_7RQB_013
NA

HL_91503.3*
1/BB/410:417
homologous
HL_7RQB_014
NA

HL_32512.8*
1/BB/462:467
homologous
HL_7RQB_015
NA

HL_43074.18*
1/BB/487:493
homologous
HL_7RQB_016
NA

HL_43074.18*
1/BB/543:550
homologous
HL_7RQB_017
NA
1/BB/566:575T-loop with 2 stacked bulged bases
geometric
HL_5J7L_150
NA

HL_33239.17*
1/BB/611:617NANA
1/BB/629:634
homologous
HL_7RQB_020
NA

HL_43074.18*
1/BB/641:647
homologous
HL_7RQB_021
NA

HL_02361.6*
1/BB/712:719
homologous
HL_7RQB_022
NA

HL_93727.5*
1/BB/744:753
homologous
HL_7RQB_023
NA

HL_39334.5*
1/BB/779:785NANA
1/BB/826:831
homologous
HL_7RQB_025
NA

HL_15942.5*
1/BB/955:962
homologous
HL_7RQB_027
NA

HL_43074.18*
1/BB/978:985
homologous
HL_7RQB_028
NA

HL_72451.5*
1/BB/1064:1074
geometric
HL_1MMS_001
NA

HL_92304.3*
1/BB/1092:1099
homologous
HL_7RQB_030
NA
1/BB/1222:1227
homologous
HL_7RQB_032
NA

HL_43074.18*
1/BB/1281:1289
homologous
HL_7RQB_033
NA

HL_33239.17*
1/BB/1324:1330
homologous
HL_7RQB_034
NA

HL_86880.5*
1/BB/1363:1368
homologous
HL_7RQB_035
NA

HL_43074.18*
1/BB/1389:1398
homologous
HL_7RQB_036
NA

HL_78457.4*
1/BB/1449:1462NANA
1/BB/1492:1498
homologous
HL_7RQB_038
NA

HL_86880.5*
1/BB/1533:1538UNCG
geometric
HL_4LFB_011
NA

HL_79299.11*
1/BB/1565:1568
homologous
HL_7RQB_039
NA

HL_69353.7*
1/BB/1612:1619
homologous
HL_7RQB_040
NA

HL_66171.3*
1/BB/1630:1636GNRA with one bulged base
geometric
HL_5J7L_174
NA

HL_02361.6*
1/BB/1691:1696
homologous
HL_7RQB_042
NA

HL_79299.11*
1/BB/1752:1756
homologous
HL_7RQB_044
NA

HL_79272.3*
1/BB/1777:1787
homologous
HL_7RQB_045
NA

HL_43613.4*
1/BB/1806:1811
homologous
HL_7RQB_046
NA

HL_43074.18*
1/BB/1868:1873Other HL
geometric
HL_5J7L_180
NA

HL_43074.18*
1/BB/1910:1920NANA
1/BB/1949:1957
homologous
HL_7RQB_049
NA

HL_53760.4*
1/BB/2027:2036
homologous
HL_7RQB_050
NA

HL_90642.5*
1/BB/2142:2149NANA
1/BB/2209:2215
geometric
HL_5J7L_185
NA

HL_16845.5*
1/BB/2248:2256
homologous
HL_7RQB_053
NA
1/BB/2264:2276
homologous
HL_7RQB_054
NA

HL_19870.5*
1/BB/2303:2313
homologous
HL_7RQB_055
NA

HL_11805.3*
1/BB/2324:2331
homologous
HL_7RQB_056
NA

HL_46142.8*
1/BB/2356:2361Other HL
geometric
HL_5J7L_190
NA

HL_43074.18*
1/BB/2374:2379
homologous
HL_7RQB_058
NA

HL_43074.18*
1/BB/2404:2413
homologous
HL_7RQB_059
NA

HL_48376.4*
1/BB/2471:2479
homologous
HL_7RQB_060
NA

HL_36421.5*
1/BB/2528:2535
homologous
HL_7RQB_061
NA

HL_92681.5*
1/BB/2551:2557
geometric
HL_5TBW_063
NA

HL_26055.6*
1/BB/2594:2599
homologous
HL_7RQB_063
NA

HL_43074.18*
1/BB/2658:2663
geometric
HL_5J7L_179
NA

HL_32527.3*
1/BB/2701:2706Ribsomal LSU H95
geometric
HL_5J7L_198
NA

HL_67719.1*
1/BB/2745:2759
homologous
HL_7RQB_066
NA

HL_56677.5*
1/BB/2796:2800NANA
1/BB/2819:2827
homologous
HL_7RQB_068
NA

HL_05018.6*
1/BB/2856:2861
homologous
HL_7RQB_069
NA

HL_43074.18*
1/CA/12:22NANA
1/CA/83:86NANA
1/CA/158:163NANA
1/CA/186:191NANA
1/CA/207:212NANA
1/CA/259:267NANA
1/CA/296:301NANA
1/CA/320:333NANA
1/CA/342:347NANA
1/CA/379:384NANA
1/CA/419:424NANA
1/CA/462:470NANA
1/CA/522:527NANA
1/CA/617:623NANA
1/CA/689:698NANA
1/CA/726:731NANA
1/CA/786:796NANA
1/CA/840:846NANA
1/CA/862:867NANA
1/CA/897:902NANA
1/CA/963:972NANA
1/CA/1012:1017NANA
1/CA/1028:1033NANA
1/CA/1076:1081NANA
1/CA/1089:1096NANA
1/CA/1134:1140NANA
1/CA/1165:1171NANA
1/CA/1265:1270NANA
1/CA/1314:1323NANA
1/CA/1356:1366NANA
1/CA/1449:1454NANA
1/CA/1515:1520NANA
1/DA/38:44NANA
1/DA/86:90NANA
1/DB/59:68
homologous
HL_7RQB_001
NA

HL_29414.1*
1/DB/87:95
geometric
HL_5J7L_135
NA

HL_17926.5*
1/DB/123:128
homologous
HL_7RQB_003
NA

HL_62869.3*
1/DB/137:142NANA
1/DB/158:168
geometric
HL_5J7L_138
NA

HL_81820.1*
1/DB/194:201
geometric
HL_5J7L_139
NA

HL_23481.5*
1/DB/225:230
homologous
HL_7RQB_007
NA

HL_06569.2*
1/DB/246:252
homologous
HL_7RQB_008
NA

HL_67216.5*
1/DB/305:312
homologous
HL_7RQB_010
NA

HL_68493.6*
1/DB/319:323
homologous
HL_7RQB_011
NA

HL_98557.5*
1/DB/327:335
homologous
HL_7RQB_012
NA

HL_08002.6*
1/DB/382:392
homologous
HL_7RQB_013
NA

HL_91503.3*
1/DB/410:417
homologous
HL_7RQB_014
NA

HL_32512.8*
1/DB/462:467
homologous
HL_7RQB_015
NA

HL_43074.18*
1/DB/487:493
homologous
HL_7RQB_016
NA

HL_43074.18*
1/DB/543:550NANA
1/DB/566:575
homologous
HL_7RQB_018
NA

HL_33239.17*
1/DB/611:617NANA
1/DB/629:634
homologous
HL_7RQB_020
NA

HL_43074.18*
1/DB/641:647
homologous
HL_7RQB_021
NA

HL_02361.6*
1/DB/712:719
homologous
HL_7RQB_022
NA

HL_93727.5*
1/DB/744:753
homologous
HL_7RQB_023
NA

HL_39334.5*
1/DB/779:785NANA
1/DB/826:831
homologous
HL_7RQB_025
NA

HL_15942.5*
1/DB/955:962
homologous
HL_7RQB_027
NA

HL_43074.18*
1/DB/978:985
homologous
HL_7RQB_028
NA

HL_72451.5*
1/DB/1064:1074
geometric
HL_1MMS_001
NA

HL_92304.3*
1/DB/1092:1099
homologous
HL_7RQB_030
NA
1/DB/1172:1177
geometric
HL_5M3H_001
NA

HL_35894.3*
1/DB/1222:1227
homologous
HL_7RQB_032
NA

HL_43074.18*
1/DB/1281:1289
homologous
HL_7RQB_033
NA

HL_33239.17*
1/DB/1324:1330
homologous
HL_7RQB_034
NA

HL_86880.5*
1/DB/1363:1368
homologous
HL_7RQB_035
NA

HL_43074.18*
1/DB/1389:1398
homologous
HL_7RQB_036
NA

HL_78457.4*
1/DB/1449:1462NANA
1/DB/1492:1498
homologous
HL_7RQB_038
NA

HL_86880.5*
1/DB/1533:1538UNCG
geometric
HL_4LFB_011
NA

HL_79299.11*
1/DB/1565:1568
homologous
HL_7RQB_039
NA

HL_69353.7*
1/DB/1612:1619
homologous
HL_7RQB_040
NA

HL_66171.3*
1/DB/1630:1636GNRA with one bulged base
geometric
HL_5J7L_174
NA

HL_02361.6*
1/DB/1691:1696
homologous
HL_7RQB_042
NA

HL_79299.11*
1/DB/1752:1756
homologous
HL_7RQB_044
NA

HL_79272.3*
1/DB/1777:1787
homologous
HL_7RQB_045
NA

HL_43613.4*
1/DB/1806:1811
homologous
HL_7RQB_046
NA

HL_43074.18*
1/DB/1868:1873Other HL
geometric
HL_5J7L_180
NA

HL_43074.18*
1/DB/1910:1920NANA
1/DB/1949:1957
homologous
HL_7RQB_049
NA

HL_53760.4*
1/DB/2027:2036
homologous
HL_7RQB_050
NA

HL_90642.5*
1/DB/2142:2149NANA
1/DB/2209:2215
geometric
HL_5J7L_185
NA

HL_16845.5*
1/DB/2248:2256
homologous
HL_7RQB_053
NA
1/DB/2264:2276
homologous
HL_7RQB_054
NA

HL_19870.5*
1/DB/2303:2313
homologous
HL_7RQB_055
NA

HL_11805.3*
1/DB/2324:2331
homologous
HL_7RQB_056
NA

HL_46142.8*
1/DB/2356:2361Other HL
geometric
HL_5J7L_190
NA

HL_43074.18*
1/DB/2374:2379
homologous
HL_7RQB_058
NA

HL_43074.18*
1/DB/2404:2413
homologous
HL_7RQB_059
NA

HL_48376.4*
1/DB/2471:2479
homologous
HL_7RQB_060
NA

HL_36421.5*
1/DB/2528:2535
homologous
HL_7RQB_061
NA

HL_92681.5*
1/DB/2551:2557
geometric
HL_5TBW_063
NA

HL_26055.6*
1/DB/2594:2599
homologous
HL_7RQB_063
NA

HL_43074.18*
1/DB/2658:2663
homologous
HL_7RQB_064
NA

HL_43074.18*
1/DB/2701:2706Ribsomal LSU H95
geometric
HL_5J7L_198
NA

HL_67719.1*
1/DB/2745:2759
homologous
HL_7RQB_066
NA

HL_56677.5*
1/DB/2796:2800NANA
1/DB/2819:2827
homologous
HL_7RQB_068
NA

HL_05018.6*
1/DB/2856:2861
homologous
HL_7RQB_069
NA

HL_43074.18*

Problematic loops

#loop idProblemSequence
HL_4V54_005NA
HL_4V54_024NA
HL_4V54_038NA
HL_4V54_059NA
HL_4V54_064NA
HL_4V54_077NA
HL_4V54_162NA
HL_4V54_180NA

Valid loops

#loop idlocationannotation
(mapped to, source)
motif group
(similar to)
1/AA/30:32,
1/AA/552:553
NANA
1/AA/44:45,
1/AA/396:398
NANA
1/AA/47:52,
1/AA/359:361
NANA
1/AA/54:56,
1/AA/356:357
NANA
1/AA/63:66,
1/AA/103:104
NANA
1/AA/67:69,
1/AA/99:102
NANA
1/AA/70:73,
1/AA/97:98
NANA
1/AA/75:76,
1/AA/93:95
NANA
1/AA/128:131,
1/AA/231:233
NANA
1/AA/132:136,
1/AA/227:230
NANA
1/AA/144:146,
1/AA/176:178
NANA
1/AA/147:153,
1/AA/168:175
NANA
1/AA/203:206,
1/AA/213:214
NANA
1/AA/242:247,
1/AA/277:284
NANA
1/AA/249:252,
1/AA/274:275
NANA
1/AA/292:293,
1/AA/304:308
NANA
1/AA/367:369,
1/AA/392:393
NANA
1/AA/371:375,
1/AA/389:390
NANA
1/AA/375:376,
1/AA/387:389
NANA
1/AA/409:416,
1/AA/427:433
NANA
1/AA/440:442,
1/AA/492:497
NANA
1/AA/446:450,
1/AA/483:488
NANA
1/AA/450:454,
1/AA/479:483
NANA
1/AA/454:455,
1/AA/477:479
NANA
1/AA/458:459,
1/AA/472:474
NANA
1/AA/460:462,
1/AA/470:471
NANA
1/AA/504:511,
1/AA/540:541
NANA
1/AA/515:521,
1/AA/528:536
NANA
1/AA/569:575,
1/AA/880:881
NANA
1/AA/580:584,
1/AA/757:761
NANA
1/AA/594:596,
1/AA/644:645
NANA
1/AA/597:598,
1/AA/640:643
NANA
1/AA/605:612,
1/AA/628:633
NANA
1/AA/654:655,
1/AA/751:754
NANA
1/AA/658:659,
1/AA/746:748
NANA
1/AA/662:666,
1/AA/740:743
NANA
1/AA/673:678,
1/AA/712:717
NANA
1/AA/684:688,
1/AA/699:706
NANA
1/AA/774:778,
1/AA/804:805
NANA
1/AA/779:783,
1/AA/799:803
NANA
1/AA/887:894,
1/AA/905:910
NANA
1/AA/922:923,
1/AA/1393:1395
NANA
1/AA/925:927,
1/AA/1390:1391
NANA
1/AA/933:935,
1/AA/1380:1384
NANA
1/AA/953:954,
1/AA/1226:1228
NANA
1/AA/993:997,
1/AA/1044:1045
NANA
1/AA/998:999,
1/AA/1041:1043
NANA
1/AA/1048:1050,
1/AA/1208:1209
NANA
1/AA/1052:1056,
1/AA/1204:1206
NANA
1/AA/1057:1058,
1/AA/1199:1203
NANA
1/AA/1060:1061,
1/AA/1195:1197
NANA
1/AA/1061:1063,
1/AA/1193:1195
NANA
1/AA/1124:1128,
1/AA/1144:1149
NANA
1/AA/1129:1132,
1/AA/1142:1143
NANA
1/AA/1158:1161,
1/AA/1175:1181
NANA
1/AA/1247:1253,
1/AA/1284:1290
NANA
1/AA/1255:1258,
1/AA/1277:1282
NANA
1/AA/1259:1263,
1/AA/1272:1276
NANA
1/AA/1303:1308,
1/AA/1329:1334
NANA
1/AA/1399:1401,
1/AA/1501:1504
NANA
1/AA/1401:1404,
1/AA/1497:1501
NANA
1/AA/1405:1407,
1/AA/1494:1496
NANA
1/AA/1407:1409,
1/AA/1491:1494
NANA
1/AA/1412:1414,
1/AA/1486:1488
NANA
1/AA/1416:1419,
1/AA/1481:1484
NANA
1/AA/1430:1435,
1/AA/1466:1470
NANA
1/AA/1440:1442,
1/AA/1460:1461
NANA
1/AA/1445:1448,
1/AA/1455:1457
NANA
1/BA/17:18,
1/BA/65:67
NANA
1/BA/23:28,
1/BA/56:60
NANA
1/BA/30:31,
1/BA/51:54
NANA
1/BA/34:38,
1/BA/44:48
NANA
1/BA/71:79,
1/BA/97:105
NANA
1/BB/24:30,
1/BB/510:516
Triple sheared with non-canonical cWW
geometric
IL_5J7L_245
NA

IL_66414.5*
1/BB/36:37,
1/BB/442:444
Single bulged A
homologous
IL_7RQB_002
NA

IL_80007.16*
1/BB/43:44,
1/BB/434:436
Minor groove platform
homologous
IL_7RQB_003
NA

IL_06437.11*
1/BB/81:85,
1/BB/97:105
NANA
1/BB/183:184,
1/BB/212:214
Single stack bend
homologous
IL_7RQB_005
NA

IL_04038.4*
1/BB/188:194,
1/BB/201:208
8x7 Sarcin-Ricin; G-bulge
geometric
IL_5J7L_250
NA

IL_04346.5*
1/BB/239:245,
1/BB/253:258
7x6 Sarcin-Ricin; G-bulge
homologous
IL_7RQB_007
NA

IL_35110.5*
1/BB/269:271,
1/BB/366:370

geometric
IL_5J7L_252
NA

IL_47972.1*
1/BB/274:281,
1/BB/359:363

geometric
IL_5J7L_253
NA

IL_77870.1*
1/BB/293:295,
1/BB/343:347

homologous
IL_7RQB_013
NA

IL_69440.1*
1/BB/481:484,
1/BB/496:509

homologous
IL_7RQB_014
NA

IL_60992.5*
1/BB/536:539,
1/BB/554:557
Double sheared
geometric
IL_5J7L_256
NA

IL_09705.7*
1/BB/564:566,
1/BB/575:577

homologous
IL_7RQB_015
NA

IL_01312.13*
1/BB/606:610,
1/BB/618:622
AAA cross-strand stack
homologous
IL_7RQB_016
NA

IL_56467.6*
1/BB/672:674,
1/BB/806:808

homologous
IL_7RQB_017
NA

IL_01312.13*
1/BB/674:678,
1/BB/799:806
tHW-tHW cross-strand stack
geometric
IL_5J7L_260
NA

IL_17470.5*
1/BB/697:698,
1/BB/763:765
Single bulged A
geometric
IL_5J7L_261
NA

IL_80007.16*
1/BB/702:703,
1/BB/728:730
Single bulged G
homologous
IL_7RQB_020
NA

IL_59137.10*
1/BB/703:707,
1/BB/724:728
Triple sheared
geometric
IL_5J7L_263
NA

IL_56467.6*
1/BB/738:740,
1/BB/757:758
Major groove platform
geometric
IL_5J7L_264
NA

IL_80663.10*
1/BB/775:777,
1/BB/787:791
Multiple bulged bases
geometric
IL_5J7L_265
NA

IL_90991.5*
1/BB/837:838,
1/BB/940:942
Single stack bend
homologous
IL_7RQB_024
NA

IL_04038.4*
1/BB/844:848,
1/BB/930:934
NANA
1/BB/850:851,
1/BB/926:928
Single stack bend
geometric
IL_5J7L_269
NA

IL_04038.4*
1/BB/856:858,
1/BB/919:921

geometric
IL_4V88_472
NA

IL_01312.13*
1/BB/858:862,
1/BB/915:919
5x5 Sarcin-Ricin with intercalated A; G-bulge
geometric
IL_4V9F_033
NA

IL_83354.1*
1/BB/862:863,
1/BB/913:915
Minor groove platform
homologous
IL_7RQB_028
NA

IL_06437.11*
1/BB/864:868,
1/BB/909:912
C-loop
homologous
IL_7RQB_029
NA

IL_63596.4*
1/BB/870:872,
1/BB/905:907
Isolated cWS basepair
homologous
IL_7RQB_030
NA

IL_67621.5*
1/BB/994:996,
1/BB/1159:1160
Single bulged C
homologous
IL_7RQB_035
NA

IL_61258.10*
1/BB/998:1002,
1/BB/1153:1157
UAA/GAN
homologous
IL_7RQB_036
NA

IL_53523.5*
1/BB/1004:1011,
1/BB/1150:1151
SSU/LSU pseudoknot
geometric
IL_5J7L_278
NA

IL_15861.6*
1/BB/1011:1013,
1/BB/1149:1150
Single bulged U
homologous
IL_7RQB_038
NA

IL_83039.11*
1/BB/1018:1024,
1/BB/1140:1144

geometric
IL_4WF9_039
NA

IL_57188.3*
1/BB/1024:1030,
1/BB/1124:1140

geometric
IL_5J7L_281
NA

IL_22615.1*
1/BB/1031:1034,
1/BB/1121:1123
Isolated non-canonical cWW with bulges
homologous
IL_7RQB_041
NA

IL_55456.1*
1/BB/1038:1041,
1/BB/1114:1117
Tandem non-canonical cWW pairs
geometric
IL_5J7L_283
NA

IL_85877.10*
1/BB/1043:1051,
1/BB/1108:1112
Kink-turn
homologous
IL_7RQB_042
NA

IL_90538.3*
1/BB/1059:1062,
1/BB/1076:1079

geometric
IL_1MMS_001
NA

IL_23544.2*
1/BB/1087:1090,
1/BB/1101:1102
Major groove platform
geometric
IL_4V9F_044
NA

IL_80663.10*
1/BB/1196:1198,
1/BB/1247:1250
Isolated cWS basepair
homologous
IL_7RQB_045
NA

IL_67621.5*
1/BB/1202:1206,
1/BB/1240:1243

geometric
IL_5J7L_287
NA

IL_91920.1*
1/BB/1208:1215,
1/BB/1234:1238
Kink-turn
homologous
IL_7RQB_047
NA

IL_29549.9*
1/BB/1262:1269,
1/BB/2011:2017
8x7 Sarcin-Ricin; G-bulge
homologous
IL_7RQB_049
NA

IL_04346.5*
1/BB/1310:1313,
1/BB/1603:1604
Major groove platform; stack outside cWW
homologous
IL_7RQB_050
NA

IL_70995.6*
1/BB/1319:1323,
1/BB/1331:1333
C-loop
homologous
IL_7RQB_051
NA

IL_63596.4*
1/BB/1351:1355,
1/BB/1376:1380
UAA/GAN
homologous
IL_7RQB_052
NA

IL_53523.5*
1/BB/1357:1361,
1/BB/1370:1374
tSH-tHW-tHS
homologous
IL_7RQB_053
NA

IL_39521.5*
1/BB/1415:1416,
1/BB/1582:1587

geometric
IL_5J7L_294
NA

IL_90348.1*
1/BB/1417:1421,
1/BB/1577:1581
UAA/GAN
homologous
IL_7RQB_055
NA

IL_53523.5*
1/BB/1432:1435,
1/BB/1557:1561
Tandem non-canonical cWW pairs
geometric
IL_5J7L_296
NA

IL_85877.10*
1/BB/1437:1440,
1/BB/1551:1555
NANA
1/BB/1468:1471,
1/BB/1520:1524

geometric
IL_5J7L_299
NA

IL_68574.2*
1/BB/1474:1478,
1/BB/1513:1517
tSH-tHW-tHS
geometric
IL_5J7L_300
NA

IL_39521.5*
1/BB/1481:1482,
1/BB/1507:1510
NANA
1/BB/1489:1491,
1/BB/1499:1500
Single bulged A
homologous
IL_7RQB_062
NA

IL_40508.4*
1/BB/1526:1529,
1/BB/1542:1546
UAA/GAN variation
geometric
IL_5J7L_303
NA

IL_81389.2*
1/BB/1651:1656,
1/BB/2004:2006

homologous
IL_7RQB_064
NA

IL_12566.2*
1/BB/1663:1665,
1/BB/1995:1997
Isolated tWW turn
homologous
IL_7RQB_065
NA

IL_54997.5*
1/BB/1666:1669,
1/BB/1993:1994
Major groove platform; stack outside cWW
homologous
IL_7RQB_066
NA

IL_80663.10*
1/BB/1669:1674,
1/BB/1990:1993
Intercalated tWH
geometric
IL_5J7L_307
NA

IL_01312.13*
1/BB/1686:1691,
1/BB/1696:1702
tSH-tSH-tHH-tHS
geometric
IL_5J7L_308
NA

IL_66584.5*
1/BB/1712:1718,
1/BB/1742:1746
6x5 Sarcin-Ricin; G-bulge
geometric
IL_5J7L_309
NA

IL_88269.2*
1/BB/1720:1724,
1/BB/1736:1740
Triple sheared
geometric
IL_5J7L_310
NA

IL_56467.6*
1/BB/1727:1728,
1/BB/1731:1733
Single bulged C
geometric
IL_5J7L_311
NA

IL_61258.10*
1/BB/1770:1771,
1/BB/1980:1982
Single bulged A
homologous
IL_7RQB_069
NA

IL_80007.16*
1/BB/1798:1804,
1/BB/1813:1821
Kink-turn related
homologous
IL_7RQB_070
NA

IL_17069.3*
1/BB/1837:1840,
1/BB/1902:1903
Major groove outside cWW, minor groove, intercalation pocket
homologous
IL_7RQB_071
NA

IL_31836.1*
1/BB/1841:1842,
1/BB/1898:1901
Major groove outside cWW, minor groove, intercalation pocket
geometric
IL_5J7L_315
NA

IL_13730.12*
1/BB/1846:1849,
1/BB/1893:1894
Minor groove platform
homologous
IL_7RQB_073
NA

IL_06437.11*
1/BB/1864:1867,
1/BB/1874:1878
UAA/GAN related
geometric
IL_5J7L_317
NA

IL_81389.2*
1/BB/1933:1934,
1/BB/1964:1967
Multiple bulged bases
homologous
IL_7RQB_076
NA

IL_69632.1*
1/BB/1934:1945,
1/BB/1961:1964

geometric
IL_7A0S_072
NA

IL_07097.1*
1/BB/2050:2052,
1/BB/2617:2618
Major groove platform
homologous
IL_7RQB_078
NA

IL_80663.10*
1/BB/2054:2056,
1/BB/2612:2615
NANA
1/BB/2067:2069,
1/BB/2442:2443
Single bulged U
homologous
IL_7RQB_080
NA

IL_83039.11*
1/BB/2070:2071,
1/BB/2438:2441
Minor groove platform
homologous
IL_7RQB_081
NA

IL_06437.11*
1/BB/2081:2083,
1/BB/2236:2239
Isolated tHS basepair with bulges
homologous
IL_7RQB_082
NA

IL_38958.6*
1/BB/2085:2087,
1/BB/2232:2234

homologous
IL_7RQB_083
NA

IL_01312.13*
1/BB/2103:2105,
1/BB/2184:2186
Stack and bulge
geometric
IL_2ET8_001
NA

IL_04038.4*
1/BB/2108:2110,
1/BB/2179:2181
NANA
1/BB/2202:2204,
1/BB/2220:2221
Single bulged U
geometric
IL_5J7L_331
NA

IL_21340.1*
1/BB/2297:2299,
1/BB/2317:2321
NANA
1/BB/2350:2353,
1/BB/2364:2367
Double sheared
homologous
IL_7RQB_089
NA

IL_09705.7*
1/BB/2401:2403,
1/BB/2414:2415
NANA
1/BB/2453:2454,
1/BB/2498:2500
Single stack bend
geometric
IL_4WF9_089
NA

IL_04038.4*
1/BB/2454:2455,
1/BB/2496:2498
Major groove platform
homologous
IL_7RQB_092
NA

IL_80663.10*
1/BB/2457:2459,
1/BB/2493:2494
Major groove platform
geometric
IL_5TBW_104
NA

IL_80663.10*
1/BB/2459:2461,
1/BB/2489:2493
Major groove minor groove platform with extra cWW
geometric
IL_5J7L_337
NA

IL_96042.4*
1/BB/2466:2470,
1/BB/2480:2484
Triple sheared
homologous
IL_7RQB_095
NA

IL_56467.6*
1/BB/2507:2508,
1/BB/2580:2582
Major groove platform
homologous
IL_7RQB_096
NA

IL_02060.4*
1/BB/2510:2512,
1/BB/2574:2578
Isolated non-canonical cWW with bulges
homologous
IL_7RQB_097
NA

IL_01312.13*
1/BB/2512:2513,
1/BB/2571:2574

geometric
IL_5J7L_341
NA

IL_44093.1*
1/BB/2522:2523,
1/BB/2540:2543
Minor groove platform with intercalation
homologous
IL_7RQB_099
NA

IL_95601.1*
1/BB/2591:2592,
1/BB/2601:2603
Single bulged A
homologous
IL_7RQB_101
NA

IL_80007.16*
1/BB/2636:2640,
1/BB/2774:2782
tSH-tHS-tHW
homologous
IL_7RQB_102
NA

IL_34907.2*
1/BB/2652:2658,
1/BB/2663:2668
Sarcin-Ricin target in LSU H95; G-bulge
homologous
IL_7RQB_103
NA

IL_35110.5*
1/BB/2680:2684,
1/BB/2725:2727
C-loop
homologous
IL_7RQB_104