7RYF Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7RYF_001 | 1/A/66:75 | No text annotation Not in a motif group | homologous HL_7RQB_001 HL_99167.1 | |
| HL_7RYF_002 | 1/A/93:104 | No text annotation Not in a motif group | ||
| HL_7RYF_003 | 1/A/130:135 | No text annotation Not in a motif group | homologous HL_4WF9_003 HL_75407.1 | |
| HL_7RYF_004 | 1/A/144:149 | No text annotation Not in a motif group | geometric HL_4WF9_003 HL_75407.1 | |
| HL_7RYF_005 | 1/A/165:175 | No text annotation Not in a motif group | homologous HL_5J7L_138 HL_81820.1 | |
| HL_7RYF_006 | 1/A/201:208 | No text annotation Not in a motif group | homologous HL_4WF9_006 HL_06192.2 | |
| HL_7RYF_007 | 1/A/232:237 | No text annotation Not in a motif group | geometric HL_1WZ2_007 HL_10278.1 | |
| HL_7RYF_008 | 1/A/253:259 | No text annotation Not in a motif group | homologous HL_7RQB_008 HL_67216.7 | |
| HL_7RYF_009 | 1/A/307:314 | T-loop with 1 bulged base Not in a motif group | geometric HL_5J7L_142 HL_89380.2 | |
| HL_7RYF_010 | 1/A/321:325 | No text annotation Not in a motif group | homologous HL_5J7L_143 HL_75407.1 | |
| HL_7RYF_011 | 1/A/329:337 | No text annotation Not in a motif group | homologous HL_5J7L_144 HL_08002.9 | |
| HL_7RYF_012 | 1/A/381:391 | No text annotation Not in a motif group | homologous HL_5J7L_145 HL_91503.4 | |
| HL_7RYF_013 | 1/A/409:416 | No text annotation Not in a motif group | homologous HL_7A0S_014 HL_96598.1 | |
| HL_7RYF_014 | 1/A/461:466 | No text annotation Not in a motif group | homologous HL_7RQB_015 HL_42097.2 | |
| HL_7RYF_015 | 1/A/486:492 | No text annotation Not in a motif group | homologous HL_5J7L_148 HL_42097.2 | |
| HL_7RYF_016 | 1/A/542:548 | No text annotation Not in a motif group | geometric HL_5U3G_001 HL_87030.2 | |
| HL_7RYF_017 | 1/A/564:573 | T-loop with 2 stacked bulged bases Not in a motif group | geometric HL_5J7L_150 HL_89380.2 | |
| HL_7RYF_018 | 1/A/609:615 | No text annotation Not in a motif group | homologous HL_5J7L_151 HL_90617.2 | |
| HL_7RYF_019 | 1/A/627:632 | GNRA Not in a motif group | homologous HL_5J7L_152 HL_42097.2 | |
| HL_7RYF_020 | 1/A/639:645 | No text annotation Not in a motif group | homologous HL_7RQB_021 HL_42097.2 | |
| HL_7RYF_021 | 1/A/709:718 | No text annotation Not in a motif group | ||
| HL_7RYF_022 | 1/A/742:751 | No text annotation Not in a motif group | geometric HL_4WF9_023 HL_39334.6 | |
| HL_7RYF_023 | 1/A/777:783 | No text annotation Not in a motif group | homologous HL_5J7L_156 HL_74322.1 | |
| HL_7RYF_024 | 1/A/824:829 | No text annotation Not in a motif group | homologous HL_7RQB_025 HL_64365.1 | |
| HL_7RYF_026 | 1/A/951:960 | No text annotation Not in a motif group | homologous HL_5J7L_159 NA | |
| HL_7RYF_027 | 1/A/975:982 | No text annotation Not in a motif group | homologous HL_5J7L_160 HL_64430.2 | |
| HL_7RYF_028 | 1/A/1169:1173 | No text annotation Not in a motif group | ||
| HL_7RYF_029 | 1/A/1217:1222 | No text annotation Not in a motif group | homologous HL_4WF9_031 HL_87030.2 | |
| HL_7RYF_030 | 1/A/1276:1284 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5J7L_165 HL_89380.2 | |
| HL_7RYF_031 | 1/A/1319:1325 | No text annotation Not in a motif group | homologous HL_5J7L_166 HL_46680.1 | |
| HL_7RYF_032 | 1/A/1358:1363 | Other HL Not in a motif group | homologous HL_5J7L_167 HL_87030.2 | |
| HL_7RYF_033 | 1/A/1384:1393 | No text annotation Not in a motif group | homologous HL_5J7L_168 HL_69023.2 | |
| HL_7RYF_034 | 1/A/1446:1454 | No text annotation Not in a motif group | homologous HL_5J7L_169 HL_53837.1 | |
| HL_7RYF_036 | 1/A/1530:1535 | No text annotation Not in a motif group | ||
| HL_7RYF_037 | 1/A/1563:1566 | No text annotation Not in a motif group | homologous HL_5J7L_172 HL_38927.2 | |
| HL_7RYF_038 | 1/A/1610:1617 | No text annotation Not in a motif group | homologous HL_4WF9_038 HL_64430.2 | |
| HL_7RYF_039 | 1/A/1628:1634 | GNRA with one bulged base Not in a motif group | homologous HL_5J7L_174 HL_42097.2 | |
| HL_7RYF_040 | 1/A/1689:1694 | No text annotation Not in a motif group | homologous HL_7RQB_042 HL_03562.2 | |
| HL_7RYF_041 | 1/A/1723:1729 | No text annotation Not in a motif group | ||
| HL_7RYF_042 | 1/A/1748:1752 | No text annotation Not in a motif group | homologous HL_7RQB_044 HL_76539.2 | |
| HL_7RYF_043 | 1/A/1773:1783 | No text annotation Not in a motif group | homologous HL_4WF9_043 HL_43613.5 | |
| HL_7RYF_044 | 1/A/1802:1807 | No text annotation Not in a motif group | homologous HL_7RQB_046 HL_42097.2 | |
| HL_7RYF_045 | 1/A/1863:1870 | No text annotation Not in a motif group | homologous HL_4WF9_045 NA | |
| HL_7RYF_046 | 1/A/1945:1953 | No text annotation Not in a motif group | homologous HL_5J7L_182 HL_51824.1 | |
| HL_7RYF_047 | 1/A/2023:2032 | No text annotation Not in a motif group | ||
| HL_7RYF_048 | 1/A/2205:2211 | No text annotation Not in a motif group | homologous HL_5J7L_185 HL_16845.6 | |
| HL_7RYF_049 | 1/A/2244:2252 | No text annotation Not in a motif group | homologous HL_4WF9_049 HL_53171.2 | |
| HL_7RYF_050 | 1/A/2260:2272 | No text annotation Not in a motif group | homologous HL_5J7L_187 HL_19870.6 | |
| HL_7RYF_051 | 1/A/2299:2309 | No text annotation Not in a motif group | homologous HL_7A0S_054 HL_11805.3 | |
| HL_7RYF_052 | 1/A/2320:2327 | No text annotation Not in a motif group | homologous HL_4WF9_052 HL_12078.2 | |
| HL_7RYF_053 | 1/A/2351:2358 | No text annotation Not in a motif group | homologous HL_4WF9_053 HL_09136.1 | |
| HL_7RYF_054 | 1/A/2370:2375 | GNRA Not in a motif group | homologous HL_5J7L_191 HL_42097.2 | |
| HL_7RYF_055 | 1/A/2400:2409 | No text annotation Not in a motif group | homologous HL_5J7L_192 HL_30784.2 | |
| HL_7RYF_056 | 1/A/2466:2476 | No text annotation Not in a motif group | ||
| HL_7RYF_057 | 1/A/2524:2531 | No text annotation Not in a motif group | homologous HL_5J7L_194 HL_91104.1 | |
| HL_7RYF_058 | 1/A/2547:2553 | No text annotation Not in a motif group | homologous HL_5J7L_195 NA | |
| HL_7RYF_059 | 1/A/2590:2595 | GNRA Not in a motif group | homologous HL_5J7L_196 HL_42097.2 | |
| HL_7RYF_060 | 1/A/2654:2659 | GNRA Not in a motif group | geometric HL_4QLM_001 HL_30784.2 | |
| HL_7RYF_061 | 1/A/2697:2702 | Ribsomal LSU H95 Not in a motif group | homologous HL_5J7L_198 HL_46680.1 | |
| HL_7RYF_062 | 1/A/2741:2755 | No text annotation Not in a motif group | homologous HL_5J7L_199 HL_56677.7 | |
| HL_7RYF_063 | 1/A/2792:2795 | No text annotation Not in a motif group | ||
| HL_7RYF_064 | 1/A/2815:2823 | No text annotation Not in a motif group | homologous HL_7RQB_068 HL_27930.1 | |
| HL_7RYF_065 | 1/A/2852:2857 | No text annotation Not in a motif group | homologous HL_7A0S_068 HL_42097.2 | |
| HL_7RYF_066 | 1/B/36:42 | No text annotation Not in a motif group | homologous HL_5J7L_203 HL_87939.1 | |
| HL_7RYF_067 | 1/B/83:88 | No text annotation Not in a motif group | homologous HL_5J7L_204 HL_38927.2 | |
| HL_7RYF_068 | 1/a/14:24 | No text annotation Not in a motif group | homologous HL_4LFB_001 HL_89881.2 | |
| HL_7RYF_069 | 1/a/81:86 | No text annotation Not in a motif group | geometric HL_361D_002 HL_90617.2 | |
| HL_7RYF_070 | 1/a/154:159 | GNRA Not in a motif group | homologous HL_5J7L_003 HL_42097.2 | |
| HL_7RYF_071 | 1/a/182:187 | No text annotation Not in a motif group | geometric HL_6CK5_001 HL_03562.2 | |
| HL_7RYF_072 | 1/a/199:210 | No text annotation Not in a motif group | ||
| HL_7RYF_073 | 1/a/255:263 | No text annotation Not in a motif group | homologous HL_5J7L_006 HL_69023.2 | |
| HL_7RYF_074 | 1/a/292:297 | GNRA Not in a motif group | homologous HL_5J7L_007 HL_42097.2 | |
| HL_7RYF_075 | 1/a/316:329 | No text annotation Not in a motif group | homologous HL_4LFB_008 HL_81205.2 | |
| HL_7RYF_076 | 1/a/338:343 | No text annotation Not in a motif group | homologous HL_6CZR_080 HL_03562.2 | |
| HL_7RYF_077 | 1/a/375:380 | GNRA Not in a motif group | homologous HL_5J7L_010 HL_42097.2 | |
| HL_7RYF_078 | 1/a/415:420 | No text annotation Not in a motif group | geometric HL_7RQB_009 HL_89098.1 | |
| HL_7RYF_079 | 1/a/456:468 | No text annotation Not in a motif group | ||
| HL_7RYF_080 | 1/a/518:525 | No text annotation Not in a motif group | geometric HL_1WZ2_007 HL_10278.1 | |
| HL_7RYF_081 | 1/a/614:620 | No text annotation Not in a motif group | homologous HL_4LFB_014 HL_26881.1 | |
| HL_7RYF_082 | 1/a/686:695 | No text annotation Not in a motif group | homologous HL_4LFB_015 HL_12326.1 | |
| HL_7RYF_083 | 1/a/723:728 | Other HL Not in a motif group | homologous HL_5J7L_016 HL_87030.2 | |
| HL_7RYF_084 | 1/a/783:793 | No text annotation Not in a motif group | homologous HL_5J7L_017 HL_12326.1 | |
| HL_7RYF_085 | 1/a/838:842 | No text annotation Not in a motif group | ||
| HL_7RYF_086 | 1/a/859:864 | GNRA Not in a motif group | homologous HL_4LFB_019 HL_42097.2 | |
| HL_7RYF_087 | 1/a/894:899 | GNRA Not in a motif group | homologous HL_4LFB_020 HL_42097.2 | |
| HL_7RYF_088 | 1/a/960:969 | No text annotation Not in a motif group | homologous HL_4LFB_021 NA | |
| HL_7RYF_089 | 1/a/1009:1014 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_42097.2 | |
| HL_7RYF_090 | 1/a/1025:1030 | No text annotation Not in a motif group | ||
| HL_7RYF_091 | 1/a/1073:1078 | GNRA Not in a motif group | homologous HL_4LFB_024 HL_42097.2 | |
| HL_7RYF_092 | 1/a/1086:1093 | No text annotation Not in a motif group | homologous HL_4LFB_025 HL_71554.2 | |
| HL_7RYF_093 | 1/a/1131:1137 | No text annotation Not in a motif group | homologous HL_5J7L_025 HL_03562.2 | |
| HL_7RYF_094 | 1/a/1161:1169 | No text annotation Not in a motif group | ||
| HL_7RYF_095 | 1/a/1262:1267 | Other HL Not in a motif group | homologous HL_4LFB_028 HL_42097.2 | |
| HL_7RYF_096 | 1/a/1311:1320 | No text annotation Not in a motif group | homologous HL_4LFB_029 HL_89380.2 | |
| HL_7RYF_097 | 1/a/1353:1363 | No text annotation Not in a motif group | homologous HL_4LFB_030 HL_96366.1 | |
| HL_7RYF_098 | 1/a/1446:1451 | GNRA Not in a motif group | geometric HL_5J7L_010 HL_42097.2 | |
| HL_7RYF_099 | 1/a/1512:1517 | No text annotation Not in a motif group | homologous HL_6CZR_103 NA | |
| HL_7RYF_100 | 1/v/13:23 | No text annotation Not in a motif group | homologous HL_4LCK_001 NA | |
| HL_7RYF_101 | 1/v/32:40 | tRNA anticodon loop Not in a motif group | homologous HL_6UFG_007 HL_53597.2 | |
| HL_7RYF_102 | 1/v/54:62 | No text annotation Not in a motif group | geometric HL_5NFV_001 HL_76539.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7RYF_025 | No text annotation | ||
| HL_7RYF_035 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7RYF_001 | 1/A/31:37, 1/A/509:515 | Triple sheared with non-canonical cWW Not in a motif group | geometric IL_5J7L_245 IL_66414.6 | |
| IL_7RYF_002 | 1/A/43:44, 1/A/441:443 | Single bulged A Not in a motif group | homologous IL_5J7L_246 IL_37497.3 | |
| IL_7RYF_003 | 1/A/50:51, 1/A/433:435 | Minor groove platform Not in a motif group | homologous IL_5J7L_247 IL_42622.2 | |
| IL_7RYF_004 | 1/A/88:92, 1/A/105:112 | Kink-turn Not in a motif group | homologous IL_7A0S_004 IL_45067.2 | |
| IL_7RYF_005 | 1/A/190:191, 1/A/219:221 | Single stack bend Not in a motif group | homologous IL_7A0S_005 IL_76488.2 | |
| IL_7RYF_006 | 1/A/195:201, 1/A/208:215 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_5J7L_250 IL_04346.7 | |
| IL_7RYF_007 | 1/A/246:252, 1/A/260:265 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_251 IL_76042.2 | |
| IL_7RYF_008 | 1/A/276:283, 1/A/361:369 | No text annotation Not in a motif group | ||
| IL_7RYF_009 | 1/A/295:297, 1/A/345:349 | No text annotation Not in a motif group | homologous IL_4WF9_014 IL_69440.1 | |
| IL_7RYF_010 | 1/A/305:307, 1/A/314:316 | No text annotation Not in a motif group | geometric IL_1U6B_005 IL_95997.1 | |
| IL_7RYF_011 | 1/A/480:483, 1/A/495:508 | No text annotation Not in a motif group | homologous IL_7RQB_014 IL_60992.6 | |
| IL_7RYF_012 | 1/A/535:538, 1/A/552:555 | Double sheared Not in a motif group | homologous IL_5J7L_256 IL_09705.9 | |
| IL_7RYF_013 | 1/A/562:564, 1/A/573:575 | No text annotation Not in a motif group | homologous IL_4WF9_017 IL_95997.1 | |
| IL_7RYF_014 | 1/A/604:608, 1/A/616:620 | AAA cross-strand stack Not in a motif group | homologous IL_7RQB_016 IL_17136.1 | |
| IL_7RYF_015 | 1/A/670:672, 1/A/804:806 | No text annotation Not in a motif group | geometric IL_7RQB_017 IL_95997.1 | |
| IL_7RYF_016 | 1/A/672:676, 1/A/797:804 | tHW-tHW cross-strand stack Not in a motif group | homologous IL_5J7L_260 IL_17470.6 | |
| IL_7RYF_017 | 1/A/695:696, 1/A/761:763 | Single bulged A Not in a motif group | homologous IL_5J7L_261 IL_37497.3 | |
| IL_7RYF_018 | 1/A/700:701, 1/A/726:728 | Single bulged G Not in a motif group | homologous IL_7RQB_020 IL_00225.3 | |
| IL_7RYF_019 | 1/A/701:705, 1/A/722:726 | Triple sheared Not in a motif group | geometric IL_5J7L_263 IL_56467.8 | |
| IL_7RYF_020 | 1/A/736:738, 1/A/755:756 | Major groove platform Not in a motif group | homologous IL_5J7L_264 IL_27635.2 | |
| IL_7RYF_021 | 1/A/740:742, 1/A/751:753 | No text annotation Not in a motif group | homologous IL_7A0S_020 IL_95997.1 | |
| IL_7RYF_022 | 1/A/773:775, 1/A/785:789 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_265 IL_90991.6 | |
| IL_7RYF_023 | 1/A/841:845, 1/A/930:932 | Major groove platform with extra pair Not in a motif group | geometric IL_7RQB_093 IL_63450.2 | |
| IL_7RYF_024 | 1/A/845:846, 1/A/928:930 | No text annotation Not in a motif group | ||
| IL_7RYF_025 | 1/A/848:849, 1/A/924:926 | Single stack bend Not in a motif group | homologous IL_5J7L_269 IL_76488.2 | |
| IL_7RYF_026 | 1/A/854:860, 1/A/913:919 | 7x7 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_5J7L_270 IL_93830.3 | |
| IL_7RYF_027 | 1/A/860:861, 1/A/911:913 | Minor groove platform Not in a motif group | homologous IL_4WF9_032 IL_42622.2 | |
| IL_7RYF_028 | 1/A/862:866, 1/A/907:910 | C-loop Not in a motif group | homologous IL_7RQB_029 IL_02509.1 | |
| IL_7RYF_029 | 1/A/868:870, 1/A/903:905 | No text annotation Not in a motif group | homologous IL_5J7L_273 IL_95997.1 | |
| IL_7RYF_030 | 1/A/991:993, 1/A/1157:1158 | Single bulged C Not in a motif group | homologous IL_7RQB_035 IL_61258.12 | |
| IL_7RYF_031 | 1/A/995:999, 1/A/1151:1155 | UAA/GAN Not in a motif group | homologous IL_7A0S_033 IL_89002.2 | |
| IL_7RYF_032 | 1/A/1001:1008, 1/A/1148:1149 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5J7L_278 IL_15861.7 | |
| IL_7RYF_033 | 1/A/1008:1010, 1/A/1147:1148 | Single bulged U Not in a motif group | geometric IL_5J7L_279 IL_83039.14 | |
| IL_7RYF_034 | 1/A/1015:1021, 1/A/1137:1142 | No text annotation Not in a motif group | homologous IL_7RQB_039 IL_57188.3 | |
| IL_7RYF_035 | 1/A/1021:1027, 1/A/1121:1137 | No text annotation Not in a motif group | geometric IL_5J7L_281 IL_50715.1 | |
| IL_7RYF_036 | 1/A/1028:1031, 1/A/1118:1120 | No text annotation Not in a motif group | geometric IL_6DME_003 IL_63450.2 | |
| IL_7RYF_037 | 1/A/1035:1039, 1/A/1110:1114 | No text annotation Not in a motif group | geometric IL_5TBW_121 IL_05145.2 | |
| IL_7RYF_038 | 1/A/1039:1050, 1/A/1103:1110 | No text annotation Not in a motif group | ||
| IL_7RYF_039 | 1/A/1191:1193, 1/A/1242:1245 | Isolated cWS basepair Not in a motif group | homologous IL_4WF9_044 IL_52767.2 | |
| IL_7RYF_040 | 1/A/1197:1201, 1/A/1235:1238 | No text annotation Not in a motif group | homologous IL_5J7L_287 IL_91920.1 | |
| IL_7RYF_041 | 1/A/1203:1210, 1/A/1229:1233 | Kink-turn Not in a motif group | homologous IL_7RQB_047 IL_70923.2 | |
| IL_7RYF_042 | 1/A/1257:1264, 1/A/2007:2013 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_289 IL_04346.7 | |
| IL_7RYF_043 | 1/A/1305:1308, 1/A/1601:1602 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_5J7L_290 IL_50694.2 | |
| IL_7RYF_044 | 1/A/1314:1318, 1/A/1326:1328 | Major groove minor groove platform with tHH Not in a motif group | homologous IL_4WF9_050 IL_37712.2 | |
| IL_7RYF_045 | 1/A/1346:1350, 1/A/1371:1375 | UAA/GAN Not in a motif group | homologous IL_5J7L_292 IL_89002.2 | |
| IL_7RYF_046 | 1/A/1352:1356, 1/A/1365:1369 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_293 IL_17136.1 | |
| IL_7RYF_047 | 1/A/1410:1411, 1/A/1580:1585 | No text annotation Not in a motif group | homologous IL_5J7L_294 IL_90348.1 | |
| IL_7RYF_048 | 1/A/1412:1416, 1/A/1575:1579 | UAA/GAN Not in a motif group | homologous IL_5J7L_295 IL_89002.2 | |
| IL_7RYF_049 | 1/A/1427:1430, 1/A/1555:1559 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_296 IL_55178.1 | |
| IL_7RYF_050 | 1/A/1432:1435, 1/A/1549:1553 | tSH-tHW Not in a motif group | homologous IL_7RQB_057 IL_04059.1 | |
| IL_7RYF_051 | 1/A/1445:1446, 1/A/1454:1456 | Single bulged U Not in a motif group | geometric IL_5J7L_298 IL_83039.14 | |
| IL_7RYF_052 | 1/A/1468:1473, 1/A/1509:1514 | tSH-tHW-tHS-cWW Not in a motif group | geometric IL_3LQX_002 IL_76308.4 | |
| IL_7RYF_053 | 1/A/1522:1525, 1/A/1540:1544 | No text annotation Not in a motif group | ||
| IL_7RYF_054 | 1/A/1649:1654, 1/A/2000:2002 | No text annotation Not in a motif group | homologous IL_5J7L_304 IL_12566.2 | |
| IL_7RYF_055 | 1/A/1661:1663, 1/A/1991:1993 | Isolated tWW turn Not in a motif group | homologous IL_7A0S_060 IL_54997.7 | |
| IL_7RYF_056 | 1/A/1664:1667, 1/A/1989:1990 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_066 IL_50694.2 | |
| IL_7RYF_057 | 1/A/1667:1672, 1/A/1986:1989 | Intercalated tWH Not in a motif group | geometric IL_4WF9_065 IL_82842.2 | |
| IL_7RYF_058 | 1/A/1684:1689, 1/A/1694:1700 | tSH-tSH-tHH-tHS Not in a motif group | geometric IL_5J7L_308 IL_65969.2 | |
| IL_7RYF_059 | 1/A/1716:1720, 1/A/1732:1736 | Triple sheared Not in a motif group | homologous IL_5J7L_310 IL_56467.8 | |
| IL_7RYF_060 | 1/A/1766:1767, 1/A/1976:1978 | Single bulged A Not in a motif group | homologous IL_5J7L_312 IL_37497.3 | |
| IL_7RYF_061 | 1/A/1794:1800, 1/A/1809:1817 | Kink-turn related Not in a motif group | homologous IL_7A0S_065 IL_17069.3 | |
| IL_7RYF_062 | 1/A/1833:1836, 1/A/1898:1899 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_314 IL_88739.1 | |
| IL_7RYF_063 | 1/A/1837:1838, 1/A/1894:1897 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_315 IL_16396.2 | |
| IL_7RYF_064 | 1/A/1842:1845, 1/A/1889:1890 | Minor groove platform with intercalation Not in a motif group | geometric IL_5J7L_342 IL_95601.3 | |
| IL_7RYF_065 | 1/A/1860:1863, 1/A/1870:1874 | No text annotation Not in a motif group | ||
| IL_7RYF_066 | 1/A/1929:1930, 1/A/1960:1963 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_318 IL_59677.2 | |
| IL_7RYF_067 | 1/A/1930:1941, 1/A/1957:1960 | No text annotation Not in a motif group | geometric IL_4WF9_077 IL_81589.2 | |
| IL_7RYF_068 | 1/A/2045:2048, 1/A/2613:2615 | No text annotation Not in a motif group | geometric IL_6DME_003 IL_63450.2 | |
| IL_7RYF_069 | 1/A/2050:2052, 1/A/2608:2611 | No text annotation Not in a motif group | homologous IL_5J7L_321 IL_54678.5 | |
| IL_7RYF_070 | 1/A/2060:2062, 1/A/2440:2442 | No text annotation Not in a motif group | homologous IL_5J7L_322 NA | |
| IL_7RYF_071 | 1/A/2062:2066, 1/A/2437:2440 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_1MFQ_004 IL_30621.3 | |
| IL_7RYF_072 | 1/A/2066:2067, 1/A/2434:2437 | Minor groove platform Not in a motif group | geometric IL_5TBW_094 IL_42622.2 | |
| IL_7RYF_073 | 1/A/2077:2079, 1/A/2232:2235 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_082 IL_38958.7 | |
| IL_7RYF_074 | 1/A/2081:2083, 1/A/2228:2230 | No text annotation Not in a motif group | homologous IL_5J7L_326 IL_95997.1 | |
| IL_7RYF_075 | 1/A/2198:2200, 1/A/2216:2217 | Single bulged U Not in a motif group | homologous IL_5J7L_331 IL_83039.14 | |
| IL_7RYF_076 | 1/A/2293:2295, 1/A/2313:2317 | No text annotation Not in a motif group | ||
| IL_7RYF_077 | 1/A/2346:2349, 1/A/2360:2363 | Double sheared Not in a motif group | homologous IL_7RQB_089 IL_09705.9 | |
| IL_7RYF_078 | 1/A/2397:2399, 1/A/2410:2411 | Single bulged U Not in a motif group | homologous IL_5J7L_334 IL_83039.14 | |
| IL_7RYF_079 | 1/A/2449:2450, 1/A/2494:2496 | Single stack bend Not in a motif group | homologous IL_4WF9_089 IL_76488.2 | |
| IL_7RYF_080 | 1/A/2450:2451, 1/A/2492:2494 | Major groove platform Not in a motif group | geometric IL_4WF9_090 IL_27635.2 | |
| IL_7RYF_081 | 1/A/2452:2455, 1/A/2489:2491 | No text annotation Not in a motif group | homologous IL_5J7L_336 NA | |
| IL_7RYF_082 | 1/A/2455:2457, 1/A/2485:2489 | Major groove minor groove platform with extra cWW Not in a motif group | geometric IL_5J7L_337 IL_92788.2 | |
| IL_7RYF_083 | 1/A/2462:2466, 1/A/2476:2480 | Triple sheared Not in a motif group | geometric IL_4WFL_001 IL_56467.8 | |
| IL_7RYF_084 | 1/A/2503:2505, 1/A/2575:2578 | No text annotation Not in a motif group | homologous IL_5J7L_339 NA | |
| IL_7RYF_085 | 1/A/2506:2508, 1/A/2570:2574 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5J7L_340 IL_90933.2 | |
| IL_7RYF_086 | 1/A/2508:2509, 1/A/2567:2570 | No text annotation Not in a motif group | geometric IL_5J7L_341 IL_71530.2 | |
| IL_7RYF_087 | 1/A/2518:2519, 1/A/2536:2539 | Minor groove platform with intercalation Not in a motif group | homologous IL_7A0S_091 IL_95601.3 | |
| IL_7RYF_088 | 1/A/2584:2586, 1/A/2600:2602 | No text annotation Not in a motif group | homologous IL_7RQB_100 NA | |
| IL_7RYF_089 | 1/A/2587:2588, 1/A/2597:2599 | Single bulged A Not in a motif group | homologous IL_4WF9_098 IL_69996.1 | |
| IL_7RYF_090 | 1/A/2632:2636, 1/A/2770:2778 | tSH-tHS-tHW Not in a motif group | homologous IL_4WF9_099 IL_04638.1 | |
| IL_7RYF_091 | 1/A/2647:2654, 1/A/2659:2665 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_5J7L_289 IL_04346.7 | |
| IL_7RYF_092 | 1/A/2676:2680, 1/A/2721:2723 | C-loop Not in a motif group | homologous IL_4WF9_101 IL_63596.6 | |
| IL_7RYF_093 | 1/A/2683:2687, 1/A/2714:2718 | No text annotation Not in a motif group | homologous IL_4WF9_102 IL_08296.3 | |
| IL_7RYF_094 | 1/A/2691:2692, 1/A/2707:2710 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_349 IL_71530.2 | |
| IL_7RYF_095 | 1/A/2733:2738, 1/A/2758:2763 | UAA/GAN with extra cWW Not in a motif group | homologous IL_7A0S_098 IL_49767.5 | |
| IL_7RYF_096 | 1/A/2791:2792, 1/A/2795:2797 | Single bulged U Not in a motif group | geometric IL_5J7L_279 IL_83039.14 | |
| IL_7RYF_097 | 1/A/2802:2807, 1/A/2885:2888 | No text annotation Not in a motif group | homologous IL_5J7L_351 IL_49460.2 | |
| IL_7RYF_098 | 1/A/2834:2835, 1/A/2874:2876 | Major groove intercalation Not in a motif group | homologous IL_5J7L_352 IL_16396.2 | |
| IL_7RYF_099 | 1/A/2839:2842, 1/A/2866:2870 | Multiple bulged bases with non-canonical cWW Not in a motif group | homologous IL_5J7L_353 IL_58764.3 | |
| IL_7RYF_100 | 1/A/2843:2848, 1/A/2861:2865 | No text annotation Not in a motif group | homologous IL_5J7L_354 IL_83162.5 | |
| IL_7RYF_101 | 1/B/15:16, 1/B/63:65 | Major groove intercalation Not in a motif group | homologous IL_4WF9_112 IL_37497.3 | |
| IL_7RYF_102 | 1/B/20:26, 1/B/54:59 | No text annotation Not in a motif group | ||
| IL_7RYF_103 | 1/B/28:29, 1/B/49:52 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_357 IL_09061.6 | |
| IL_7RYF_104 | 1/B/31:36, 1/B/42:47 | No text annotation Not in a motif group | geometric IL_7A0S_105 IL_93630.2 | |
| IL_7RYF_105 | 1/B/69:77, 1/B/94:102 | Bacterial 5S Loop E Not in a motif group | homologous IL_7RQB_115 IL_56455.3 | |
| IL_7RYF_106 | 1/a/32:34, 1/a/549:550 | Single bulged G Not in a motif group | homologous IL_5J7L_001 IL_00225.3 | |
| IL_7RYF_107 | 1/a/46:47, 1/a/392:394 | Single bulged A Not in a motif group | homologous IL_5J7L_002 IL_37497.3 | |
| IL_7RYF_108 | 1/a/49:54, 1/a/355:357 | No text annotation Not in a motif group | geometric IL_5J7L_003 IL_11178.1 | |
| IL_7RYF_109 | 1/a/56:58, 1/a/352:353 | Minor groove platform Not in a motif group | homologous IL_4LFB_004 IL_93353.1 | |
| IL_7RYF_110 | 1/a/65:68, 1/a/99:100 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_005 IL_76389.1 | |
| IL_7RYF_111 | 1/a/69:71, 1/a/96:98 | No text annotation Not in a motif group | homologous IL_6CZR_118 IL_95997.1 | |
| IL_7RYF_112 | 1/a/73:78, 1/a/89:94 | No text annotation Not in a motif group | geometric IL_4LFB_030 IL_04668.1 | |
| IL_7RYF_113 | 1/a/124:127, 1/a/227:229 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5J7L_009 IL_82068.2 | |
| IL_7RYF_114 | 1/a/128:132, 1/a/223:226 | No text annotation Not in a motif group | homologous IL_4LFB_008 IL_58764.3 | |
| IL_7RYF_115 | 1/a/140:142, 1/a/172:174 | Isolated cWH basepair Not in a motif group | homologous IL_5J7L_011 IL_51629.2 | |
| IL_7RYF_116 | 1/a/143:149, 1/a/164:171 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_5J7L_012 IL_80604.2 | |
| IL_7RYF_117 | 1/a/238:243, 1/a/273:280 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_5J7L_014 IL_45067.2 | |
| IL_7RYF_118 | 1/a/245:248, 1/a/270:271 | No text annotation Not in a motif group | homologous IL_4LFB_012 IL_48100.2 | |
| IL_7RYF_119 | 1/a/288:289, 1/a/300:304 | C-loop Not in a motif group | homologous IL_6CZR_125 IL_37712.2 | |
| IL_7RYF_120 | 1/a/363:365, 1/a/388:389 | Single bulged U Not in a motif group | geometric IL_5J7L_017 IL_83039.14 | |
| IL_7RYF_121 | 1/a/367:371, 1/a/385:386 | C-loop Not in a motif group | geometric IL_5J7L_018 IL_75255.1 | |
| IL_7RYF_122 | 1/a/371:372, 1/a/383:385 | Single bulged G Not in a motif group | homologous IL_5J7L_019 IL_00225.3 | |
| IL_7RYF_123 | 1/a/405:412, 1/a/423:429 | No text annotation Not in a motif group | homologous IL_4LFB_017 IL_28026.1 | |
| IL_7RYF_124 | 1/a/436:440, 1/a/487:494 | No text annotation Not in a motif group | ||
| IL_7RYF_125 | 1/a/442:446, 1/a/480:485 | tSH-tHW-tWW Not in a motif group | geometric IL_5J7L_022 IL_88269.3 | |
| IL_7RYF_126 | 1/a/446:449, 1/a/476:480 | No text annotation Not in a motif group | ||
| IL_7RYF_127 | 1/a/451:455, 1/a/469:474 | No text annotation Not in a motif group | ||
| IL_7RYF_128 | 1/a/501:508, 1/a/537:538 | SSU/LSU pseudoknot Not in a motif group | homologous IL_4LFB_020 IL_15861.7 | |
| IL_7RYF_129 | 1/a/512:518, 1/a/525:533 | No text annotation Not in a motif group | homologous IL_4LFB_021 NA | |
| IL_7RYF_130 | 1/a/566:572, 1/a/877:878 | No text annotation Not in a motif group | homologous IL_4LFB_022 IL_69996.1 | |
| IL_7RYF_131 | 1/a/577:581, 1/a/754:758 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_023 IL_17136.1 | |
| IL_7RYF_132 | 1/a/591:593, 1/a/641:642 | Major groove platform Not in a motif group | homologous IL_5J7L_028 IL_27635.2 | |
| IL_7RYF_133 | 1/a/594:595, 1/a/637:640 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_029 IL_09061.6 | |
| IL_7RYF_134 | 1/a/602:609, 1/a/625:630 | No text annotation Not in a motif group | homologous IL_5J7L_030 IL_78349.1 | |
| IL_7RYF_135 | 1/a/651:652, 1/a/748:751 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4LFB_027 IL_50694.2 | |
| IL_7RYF_136 | 1/a/656:657, 1/a/742:744 | Single stack bend Not in a motif group | homologous IL_5J7L_032 IL_76488.2 | |
| IL_7RYF_137 | 1/a/659:663, 1/a/737:740 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_033 IL_71110.1 | |
| IL_7RYF_138 | 1/a/670:675, 1/a/709:714 | No text annotation Not in a motif group | homologous IL_4LFB_030 IL_04668.1 | |
| IL_7RYF_139 | 1/a/681:685, 1/a/696:703 | Kink-turn Not in a motif group | homologous IL_5J7L_035 IL_45067.2 | |
| IL_7RYF_140 | 1/a/771:775, 1/a/801:802 | Left turn Not in a motif group | homologous IL_5J7L_036 IL_29346.1 | |
| IL_7RYF_141 | 1/a/776:780, 1/a/796:800 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_037 IL_17136.1 | |
| IL_7RYF_142 | 1/a/884:891, 1/a/902:907 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_5J7L_038 IL_24606.2 | |
| IL_7RYF_143 | 1/a/919:920, 1/a/1390:1392 | Single bulged A Not in a motif group | homologous IL_5J7L_039 IL_37497.3 | |
| IL_7RYF_144 | 1/a/922:924, 1/a/1387:1388 | Single bulged G Not in a motif group | homologous IL_4LFB_036 IL_00225.3 | |
| IL_7RYF_145 | 1/a/930:932, 1/a/1377:1381 | Minor groove platform Not in a motif group | homologous IL_4LFB_037 IL_47078.1 | |
| IL_7RYF_146 | 1/a/950:951, 1/a/1223:1225 | No text annotation Not in a motif group | homologous IL_6CZR_150 NA | |
| IL_7RYF_147 | 1/a/990:995, 1/a/1040:1042 | No text annotation Not in a motif group | ||
| IL_7RYF_148 | 1/a/995:996, 1/a/1038:1040 | No text annotation Not in a motif group | ||
| IL_7RYF_149 | 1/a/1003:1006, 1/a/1017:1020 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_280D_001 IL_30621.3 | |
| IL_7RYF_150 | 1/a/1045:1047, 1/a/1205:1206 | Single bulged U Not in a motif group | geometric IL_5J7L_046 IL_83039.14 | |
| IL_7RYF_151 | 1/a/1047:1049, 1/a/1203:1205 | No text annotation Not in a motif group | geometric IL_4WF9_042 IL_95997.1 | |
| IL_7RYF_152 | 1/a/1049:1053, 1/a/1201:1203 | Isolated cWS basepair Not in a motif group | homologous IL_4LFB_044 IL_76319.2 | |
| IL_7RYF_153 | 1/a/1054:1055, 1/a/1196:1200 | Minor groove platform Not in a motif group | homologous IL_5J7L_048 IL_93353.1 | |
| IL_7RYF_154 | 1/a/1057:1058, 1/a/1192:1194 | Single bulged A Not in a motif group | geometric IL_5J7L_049 IL_37497.3 | |
| IL_7RYF_155 | 1/a/1058:1060, 1/a/1190:1192 | No text annotation Not in a motif group | homologous IL_5J7L_050 IL_95997.1 | |
| IL_7RYF_156 | 1/a/1120:1125, 1/a/1141:1147 | No text annotation Not in a motif group | ||
| IL_7RYF_157 | 1/a/1126:1129, 1/a/1139:1140 | Minor groove platform Not in a motif group | homologous IL_5J7L_052 IL_15052.1 | |
| IL_7RYF_158 | 1/a/1155:1158, 1/a/1172:1178 | No text annotation Not in a motif group | homologous IL_5J7L_053 IL_42032.1 | |
| IL_7RYF_159 | 1/a/1244:1250, 1/a/1281:1287 | No text annotation Not in a motif group | homologous IL_4LFB_051 IL_09129.1 | |
| IL_7RYF_160 | 1/a/1252:1255, 1/a/1274:1279 | No text annotation Not in a motif group | homologous IL_4LFB_052 IL_84205.1 | |
| IL_7RYF_161 | 1/a/1256:1259, 1/a/1270:1273 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_461 IL_30621.3 | |
| IL_7RYF_162 | 1/a/1300:1305, 1/a/1326:1331 | No text annotation Not in a motif group | geometric IL_4LFB_055 IL_19954.2 | |
| IL_7RYF_163 | 1/a/1396:1398, 1/a/1498:1501 | No text annotation Not in a motif group | homologous IL_6CZR_165 NA | |
| IL_7RYF_164 | 1/a/1398:1401, 1/a/1494:1498 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_99670.1 | |
| IL_7RYF_165 | 1/a/1402:1404, 1/a/1491:1493 | No text annotation Not in a motif group | geometric IL_6IA2_005 IL_95997.1 | |
| IL_7RYF_166 | 1/a/1404:1406, 1/a/1488:1491 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_4RUM_001 IL_82068.2 | |
| IL_7RYF_167 | 1/a/1409:1411, 1/a/1483:1485 | No text annotation Not in a motif group | homologous IL_5J7L_061 IL_95997.1 | |
| IL_7RYF_168 | 1/a/1413:1416, 1/a/1478:1481 | Double sheared Not in a motif group | homologous IL_5J7L_062 IL_09705.9 | |
| IL_7RYF_169 | 1/a/1417:1420, 1/a/1474:1477 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5TBW_041 IL_30621.3 | |
| IL_7RYF_170 | 1/a/1427:1432, 1/a/1463:1467 | Triple sheared related Not in a motif group | homologous IL_5J7L_063 IL_64879.2 | |
| IL_7RYF_171 | 1/a/1436:1439, 1/a/1457:1459 | Major groove platform with extra pair Not in a motif group | geometric IL_7RQB_093 IL_63450.2 | |
| IL_7RYF_172 | 1/a/1442:1445, 1/a/1452:1454 | No text annotation Not in a motif group | homologous IL_5J7L_065 IL_02284.5 | |
| IL_7RYF_173 | 1/v/51:53, 1/v/63:65 | No text annotation Not in a motif group | homologous IL_4V9K_064 IL_95997.1 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7RYF_001 | 1/A/37:38, 1/A/473:480, 1/A/508:509 | No text annotation Not in a motif group | ||
| J3_7RYF_002 | 1/A/63:64, 1/A/77:83, 1/A/117:121 | No text annotation Not in a motif group | homologous J3_5J7L_037 NA | |
| J3_7RYF_003 | 1/A/681:687, 1/A/771:773, 1/A/789:792 | No text annotation Not in a motif group | ||
| J3_7RYF_004 | 1/A/696:698, 1/A/730:734, 1/A/758:761 | No text annotation Not in a motif group | ||
| J3_7RYF_005 | 1/A/1293:1298, 1/A/1623:1625, 1/A/1637:1640 | No text annotation Not in a motif group | homologous J3_4WF9_004 NA | |
| J3_7RYF_006 | 1/A/1301:1304, 1/A/1603:1609, 1/A/1618:1620 | No text annotation Not in a motif group | homologous J3_5J7L_042 NA | |
| J3_7RYF_007 | 1/A/1339:1344, 1/A/1377:1380, 1/A/1397:1398 | No text annotation Not in a motif group | homologous J3_5J7L_043 NA | |
| J3_7RYF_008 | 1/A/2087:2089, 1/A/2192:2196, 1/A/2219:2224 | No text annotation Not in a motif group | homologous J3_5J7L_044 NA | |
| J3_7RYF_009 | 1/A/2291:2293, 1/A/2317:2319, 1/A/2328:2333 | No text annotation Not in a motif group | homologous J3_5J7L_045 NA | |
| J3_7RYF_010 | 1/A/2513:2516, 1/A/2541:2543, 1/A/2557:2563 | No text annotation Not in a motif group | homologous J3_5J7L_046 NA | |
| J3_7RYF_011 | 1/A/2785:2787, 1/A/2801:2802, 1/A/2888:2890 | No text annotation Not in a motif group | ||
| J3_7RYF_012 | 1/A/2810:2811, 1/A/2827:2832, 1/A/2878:2882 | No text annotation Not in a motif group | homologous J3_7RQB_014 NA | |
| J3_7RYF_013 | 1/B/7:14, 1/B/66:67, 1/B/104:108 | No text annotation Not in a motif group | ||
| J3_7RYF_014 | 1/a/48:49, 1/a/357:363, 1/a/389:391 | No text annotation Not in a motif group | homologous J3_5J7L_001 NA | |
| J3_7RYF_015 | 1/a/583:585, 1/a/648:651, 1/a/751:752 | No text annotation Not in a motif group | ||
| J3_7RYF_016 | 1/a/669:670, 1/a/714:722, 1/a/729:731 | No text annotation Not in a motif group | ||
| J3_7RYF_017 | 1/a/823:826, 1/a/854:858, 1/a/865:871 | No text annotation Not in a motif group | homologous J3_5J7L_004 NA | |
| J3_7RYF_018 | 1/a/940:943, 1/a/1232:1234, 1/a/1334:1337 | No text annotation Not in a motif group | ||
| J3_7RYF_019 | 1/a/952:959, 1/a/970:981, 1/a/1218:1222 | No text annotation Not in a motif group | ||
| J3_7RYF_020 | 1/a/987:990, 1/a/1042:1044, 1/a/1207:1212 | No text annotation Not in a motif group | homologous J3_4LFB_005 NA | |
| J3_7RYF_021 | 1/a/999:1003, 1/a/1020:1024, 1/a/1031:1035 | No text annotation Not in a motif group | ||
| J3_7RYF_022 | 1/a/1060:1065, 1/a/1104:1110, 1/a/1184:1190 | No text annotation Not in a motif group | ||
| J3_7RYF_023 | 1/a/1067:1072, 1/a/1079:1084, 1/a/1095:1102 | No text annotation Not in a motif group | ||
| J3_7RYF_024 | 1/a/1113:1115, 1/a/1152:1155, 1/a/1178:1181 | No text annotation Not in a motif group | ||
| J3_7RYF_025 | 1/a/1234:1238, 1/a/1293:1300, 1/a/1331:1334 | No text annotation Not in a motif group | homologous J3_4LFB_009 NA |
Problematic loops
No problematic loops
Coloring options: