4U1U Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4U1U_001 | 1/AA/12:22 | No text annotation Not in a motif group | homologous HL_5J7L_001 HL_67265.4 | |
| HL_4U1U_002 | 1/AA/77:92 | No text annotation Not in a motif group | ||
| HL_4U1U_003 | 1/AA/158:163 | GNRA Not in a motif group | homologous HL_5J7L_003 HL_43074.18 | |
| HL_4U1U_004 | 1/AA/186:191 | GNRA Not in a motif group | homologous HL_5J7L_004 HL_43074.18 | |
| HL_4U1U_005 | 1/AA/206:213 | No text annotation Not in a motif group | geometric HL_5TBW_012 HL_94386.1 | |
| HL_4U1U_006 | 1/AA/259:267 | No text annotation Not in a motif group | homologous HL_5J7L_006 HL_93727.5 | |
| HL_4U1U_007 | 1/AA/296:301 | GNRA Not in a motif group | homologous HL_5J7L_007 HL_43074.18 | |
| HL_4U1U_008 | 1/AA/320:333 | No text annotation Not in a motif group | homologous HL_5J7L_008 HL_81205.2 | |
| HL_4U1U_009 | 1/AA/342:347 | UNCG Not in a motif group | homologous HL_5J7L_009 HL_79299.11 | |
| HL_4U1U_010 | 1/AA/379:384 | GNRA Not in a motif group | homologous HL_5J7L_010 HL_43074.18 | |
| HL_4U1U_011 | 1/AA/419:424 | UNCG Not in a motif group | homologous HL_5J7L_011 HL_79299.11 | |
| HL_4U1U_012 | 1/AA/462:470 | No text annotation Not in a motif group | homologous HL_5J7L_012 HL_42733.4 | |
| HL_4U1U_013 | 1/AA/522:527 | No text annotation Not in a motif group | geometric HL_4WF9_003 HL_62869.3 | |
| HL_4U1U_014 | 1/AA/617:623 | No text annotation Not in a motif group | homologous HL_5J7L_014 HL_26055.6 | |
| HL_4U1U_015 | 1/AA/689:698 | No text annotation Not in a motif group | homologous HL_5J7L_015 HL_87219.4 | |
| HL_4U1U_016 | 1/AA/726:731 | Other HL Not in a motif group | homologous HL_5J7L_016 HL_43074.18 | |
| HL_4U1U_017 | 1/AA/786:796 | No text annotation Not in a motif group | homologous HL_5J7L_017 HL_87219.4 | |
| HL_4U1U_018 | 1/AA/840:846 | No text annotation Not in a motif group | ||
| HL_4U1U_019 | 1/AA/862:867 | GNRA Not in a motif group | homologous HL_5J7L_019 HL_43074.18 | |
| HL_4U1U_020 | 1/AA/897:902 | GNRA Not in a motif group | homologous HL_5J7L_020 HL_43074.18 | |
| HL_4U1U_021 | 1/AA/963:972 | No text annotation Not in a motif group | homologous HL_5J7L_021 NA | |
| HL_4U1U_022 | 1/AA/1012:1017 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_43074.18 | |
| HL_4U1U_024 | 1/AA/1076:1081 | GNRA Not in a motif group | homologous HL_5J7L_023 HL_43074.18 | |
| HL_4U1U_025 | 1/AA/1089:1096 | No text annotation Not in a motif group | homologous HL_4LFB_025 HL_54035.7 | |
| HL_4U1U_026 | 1/AA/1134:1140 | No text annotation Not in a motif group | ||
| HL_4U1U_027 | 1/AA/1165:1171 | No text annotation Not in a motif group | homologous HL_5J7L_026 HL_68304.6 | |
| HL_4U1U_028 | 1/AA/1265:1270 | GNRA Not in a motif group | homologous HL_5J7L_027 HL_43074.18 | |
| HL_4U1U_029 | 1/AA/1314:1323 | No text annotation Not in a motif group | homologous HL_5J7L_028 HL_78061.2 | |
| HL_4U1U_030 | 1/AA/1356:1366 | No text annotation Not in a motif group | homologous HL_5J7L_029 HL_49992.1 | |
| HL_4U1U_031 | 1/AA/1449:1454 | UNCG Not in a motif group | homologous HL_5J7L_030 HL_79299.11 | |
| HL_4U1U_032 | 1/AA/1515:1520 | No text annotation Not in a motif group | homologous HL_4LFB_032 NA | |
| HL_4U1U_033 | 1/BA/59:68 | No text annotation Not in a motif group | homologous HL_5J7L_134 HL_29414.1 | |
| HL_4U1U_034 | 1/BA/87:95 | No text annotation Not in a motif group | homologous HL_5J7L_135 HL_17926.5 | |
| HL_4U1U_035 | 1/BA/123:128 | No text annotation Not in a motif group | homologous HL_5J7L_136 HL_62869.3 | |
| HL_4U1U_036 | 1/BA/136:143 | No text annotation Not in a motif group | ||
| HL_4U1U_037 | 1/BA/158:168 | No text annotation Not in a motif group | homologous HL_5J7L_138 HL_81820.1 | |
| HL_4U1U_038 | 1/BA/194:201 | No text annotation Not in a motif group | geometric HL_5J7L_139 HL_23481.5 | |
| HL_4U1U_039 | 1/BA/225:230 | No text annotation Not in a motif group | homologous HL_5J7L_140 HL_35894.3 | |
| HL_4U1U_040 | 1/BA/246:252 | No text annotation Not in a motif group | homologous HL_5J7L_141 HL_67216.5 | |
| HL_4U1U_041 | 1/BA/305:312 | T-loop with 1 bulged base Not in a motif group | homologous HL_5J7L_142 HL_68493.6 | |
| HL_4U1U_042 | 1/BA/319:323 | No text annotation Not in a motif group | homologous HL_5J7L_143 HL_98557.5 | |
| HL_4U1U_043 | 1/BA/327:335 | No text annotation Not in a motif group | homologous HL_5J7L_144 HL_08002.6 | |
| HL_4U1U_044 | 1/BA/382:392 | No text annotation Not in a motif group | homologous HL_5J7L_145 HL_91503.3 | |
| HL_4U1U_045 | 1/BA/410:417 | No text annotation Not in a motif group | homologous HL_5J7L_146 HL_32512.8 | |
| HL_4U1U_046 | 1/BA/462:467 | No text annotation Not in a motif group | homologous HL_7RQB_015 HL_43074.18 | |
| HL_4U1U_047 | 1/BA/487:493 | No text annotation Not in a motif group | homologous HL_5J7L_148 HL_68304.6 | |
| HL_4U1U_048 | 1/BA/543:550 | No text annotation Not in a motif group | homologous HL_5J7L_149 HL_59297.1 | |
| HL_4U1U_049 | 1/BA/566:575 | T-loop with 2 stacked bulged bases Not in a motif group | geometric HL_5J7L_150 HL_33239.17 | |
| HL_4U1U_050 | 1/BA/611:617 | No text annotation Not in a motif group | homologous HL_5J7L_151 HL_25660.1 | |
| HL_4U1U_051 | 1/BA/629:634 | GNRA Not in a motif group | homologous HL_5J7L_152 HL_43074.18 | |
| HL_4U1U_052 | 1/BA/641:647 | No text annotation Not in a motif group | homologous HL_5J7L_153 HL_16419.1 | |
| HL_4U1U_053 | 1/BA/712:719 | No text annotation Not in a motif group | homologous HL_5J7L_154 HL_93727.5 | |
| HL_4U1U_054 | 1/BA/744:753 | No text annotation Not in a motif group | homologous HL_4WF9_023 HL_39334.5 | |
| HL_4U1U_055 | 1/BA/779:785 | No text annotation Not in a motif group | homologous HL_7A0S_023 HL_77081.1 | |
| HL_4U1U_056 | 1/BA/826:831 | No text annotation Not in a motif group | homologous HL_5J7L_157 HL_15942.5 | |
| HL_4U1U_058 | 1/BA/955:962 | GNRA Not in a motif group | homologous HL_4WF9_027 HL_43074.18 | |
| HL_4U1U_059 | 1/BA/978:985 | No text annotation Not in a motif group | homologous HL_4WF9_028 HL_72451.5 | |
| HL_4U1U_060 | 1/BA/1064:1074 | No text annotation Not in a motif group | ||
| HL_4U1U_061 | 1/BA/1092:1099 | No text annotation Not in a motif group | ||
| HL_4U1U_062 | 1/BA/1168:1181 | No text annotation Not in a motif group | ||
| HL_4U1U_063 | 1/BA/1222:1227 | Other HL Not in a motif group | homologous HL_5J7L_164 HL_43074.18 | |
| HL_4U1U_064 | 1/BA/1281:1289 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5J7L_165 HL_33239.17 | |
| HL_4U1U_065 | 1/BA/1324:1330 | No text annotation Not in a motif group | homologous HL_5J7L_166 HL_86880.5 | |
| HL_4U1U_066 | 1/BA/1363:1368 | Other HL Not in a motif group | homologous HL_5J7L_167 HL_43074.18 | |
| HL_4U1U_067 | 1/BA/1389:1398 | No text annotation Not in a motif group | homologous HL_5J7L_168 HL_78457.4 | |
| HL_4U1U_068 | 1/BA/1451:1459 | No text annotation Not in a motif group | homologous HL_5J7L_169 HL_71540.1 | |
| HL_4U1U_069 | 1/BA/1492:1498 | No text annotation Not in a motif group | homologous HL_5J7L_170 HL_86880.5 | |
| HL_4U1U_070 | 1/BA/1533:1538 | UNCG Not in a motif group | homologous HL_5J7L_171 HL_79299.11 | |
| HL_4U1U_071 | 1/BA/1565:1568 | No text annotation Not in a motif group | homologous HL_5J7L_172 HL_69353.7 | |
| HL_4U1U_072 | 1/BA/1612:1619 | No text annotation Not in a motif group | homologous HL_7RQB_040 HL_66171.3 | |
| HL_4U1U_073 | 1/BA/1630:1636 | GNRA with one bulged base Not in a motif group | homologous HL_5J7L_174 HL_02361.6 | |
| HL_4U1U_074 | 1/BA/1691:1696 | UNCG Not in a motif group | geometric HL_5J7L_175 HL_79299.11 | |
| HL_4U1U_075 | 1/BA/1728:1731 | No text annotation Not in a motif group | geometric HL_5J7L_176 HL_46546.1 | |
| HL_4U1U_076 | 1/BA/1752:1756 | No text annotation Not in a motif group | homologous HL_5J7L_177 HL_79272.3 | |
| HL_4U1U_077 | 1/BA/1777:1787 | No text annotation Not in a motif group | homologous HL_5J7L_178 HL_43613.4 | |
| HL_4U1U_078 | 1/BA/1806:1811 | No text annotation Not in a motif group | homologous HL_5J7L_179 HL_32527.3 | |
| HL_4U1U_079 | 1/BA/1868:1873 | Other HL Not in a motif group | homologous HL_5J7L_180 HL_43074.18 | |
| HL_4U1U_080 | 1/BA/1910:1920 | No text annotation Not in a motif group | geometric HL_5TBW_049 HL_98248.1 | |
| HL_4U1U_081 | 1/BA/1949:1957 | No text annotation Not in a motif group | homologous HL_5J7L_182 HL_53760.4 | |
| HL_4U1U_082 | 1/BA/2027:2036 | No text annotation Not in a motif group | homologous HL_7RQB_050 HL_90642.5 | |
| HL_4U1U_084 | 1/BA/2209:2215 | No text annotation Not in a motif group | homologous HL_5J7L_185 HL_16845.5 | |
| HL_4U1U_085 | 1/BA/2248:2256 | No text annotation Not in a motif group | homologous HL_5J7L_186 NA | |
| HL_4U1U_086 | 1/BA/2264:2276 | No text annotation Not in a motif group | homologous HL_5J7L_187 HL_19870.5 | |
| HL_4U1U_087 | 1/BA/2303:2313 | No text annotation Not in a motif group | homologous HL_7RQB_055 HL_11805.3 | |
| HL_4U1U_088 | 1/BA/2324:2331 | No text annotation Not in a motif group | homologous HL_5J7L_189 HL_46142.8 | |
| HL_4U1U_089 | 1/BA/2356:2361 | Other HL Not in a motif group | homologous HL_5J7L_190 HL_43074.18 | |
| HL_4U1U_090 | 1/BA/2374:2379 | GNRA Not in a motif group | homologous HL_5J7L_191 HL_43074.18 | |
| HL_4U1U_091 | 1/BA/2404:2413 | No text annotation Not in a motif group | homologous HL_5J7L_192 HL_48376.4 | |
| HL_4U1U_092 | 1/BA/2471:2479 | No text annotation Not in a motif group | homologous HL_5J7L_193 HL_36421.5 | |
| HL_4U1U_093 | 1/BA/2528:2535 | No text annotation Not in a motif group | homologous HL_5J7L_194 HL_92681.5 | |
| HL_4U1U_094 | 1/BA/2551:2557 | No text annotation Not in a motif group | homologous HL_4WF9_058 HL_26055.6 | |
| HL_4U1U_095 | 1/BA/2594:2599 | GNRA Not in a motif group | homologous HL_5J7L_196 HL_43074.18 | |
| HL_4U1U_096 | 1/BA/2658:2663 | GNRA Not in a motif group | homologous HL_5J7L_197 HL_43074.18 | |
| HL_4U1U_097 | 1/BA/2701:2706 | Ribsomal LSU H95 Not in a motif group | homologous HL_5J7L_198 HL_67719.1 | |
| HL_4U1U_098 | 1/BA/2745:2759 | No text annotation Not in a motif group | homologous HL_5J7L_199 HL_56677.5 | |
| HL_4U1U_099 | 1/BA/2796:2799 | No text annotation Not in a motif group | geometric HL_5TBW_068 HL_46546.1 | |
| HL_4U1U_100 | 1/BA/2819:2827 | No text annotation Not in a motif group | homologous HL_5J7L_201 HL_05018.6 | |
| HL_4U1U_101 | 1/BA/2856:2861 | Other HL Not in a motif group | homologous HL_5J7L_202 HL_43074.18 | |
| HL_4U1U_102 | 1/BB/38:44 | No text annotation Not in a motif group | geometric HL_5J7L_203 HL_02733.5 | |
| HL_4U1U_103 | 1/BB/86:90 | No text annotation Not in a motif group | homologous HL_5J7L_204 HL_36982.3 | |
| HL_4U1U_104 | 1/CA/12:22 | No text annotation Not in a motif group | homologous HL_4LFB_001 HL_67265.4 | |
| HL_4U1U_106 | 1/CA/158:163 | GNRA Not in a motif group | homologous HL_5J7L_003 HL_43074.18 | |
| HL_4U1U_107 | 1/CA/186:191 | GNRA Not in a motif group | homologous HL_5J7L_004 HL_43074.18 | |
| HL_4U1U_109 | 1/CA/259:267 | No text annotation Not in a motif group | homologous HL_5J7L_006 HL_93727.5 | |
| HL_4U1U_110 | 1/CA/296:301 | GNRA Not in a motif group | homologous HL_4LFB_007 HL_43074.18 | |
| HL_4U1U_111 | 1/CA/320:333 | No text annotation Not in a motif group | homologous HL_5J7L_008 HL_81205.2 | |
| HL_4U1U_112 | 1/CA/342:347 | UNCG Not in a motif group | homologous HL_4LFB_009 HL_79299.11 | |
| HL_4U1U_113 | 1/CA/379:384 | GNRA Not in a motif group | homologous HL_4LFB_010 HL_43074.18 | |
| HL_4U1U_114 | 1/CA/419:424 | UNCG Not in a motif group | homologous HL_4LFB_011 HL_79299.11 | |
| HL_4U1U_115 | 1/CA/462:470 | No text annotation Not in a motif group | homologous HL_5J7L_012 HL_42733.4 | |
| HL_4U1U_116 | 1/CA/522:527 | No text annotation Not in a motif group | geometric HL_4WF9_003 HL_62869.3 | |
| HL_4U1U_117 | 1/CA/617:623 | No text annotation Not in a motif group | homologous HL_5J7L_014 HL_26055.6 | |
| HL_4U1U_118 | 1/CA/689:698 | No text annotation Not in a motif group | homologous HL_5J7L_015 HL_87219.4 | |
| HL_4U1U_119 | 1/CA/726:731 | Other HL Not in a motif group | homologous HL_5J7L_016 HL_43074.18 | |
| HL_4U1U_120 | 1/CA/786:796 | No text annotation Not in a motif group | homologous HL_5J7L_017 HL_87219.4 | |
| HL_4U1U_121 | 1/CA/840:846 | No text annotation Not in a motif group | ||
| HL_4U1U_122 | 1/CA/862:867 | GNRA Not in a motif group | homologous HL_5J7L_019 HL_43074.18 | |
| HL_4U1U_123 | 1/CA/897:902 | GNRA Not in a motif group | homologous HL_4LFB_020 HL_43074.18 | |
| HL_4U1U_124 | 1/CA/963:972 | No text annotation Not in a motif group | homologous HL_5J7L_021 NA | |
| HL_4U1U_125 | 1/CA/1012:1017 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_43074.18 | |
| HL_4U1U_127 | 1/CA/1076:1081 | GNRA Not in a motif group | homologous HL_5J7L_023 HL_43074.18 | |
| HL_4U1U_128 | 1/CA/1089:1096 | No text annotation Not in a motif group | homologous HL_4LFB_025 HL_54035.7 | |
| HL_4U1U_129 | 1/CA/1134:1140 | No text annotation Not in a motif group | homologous HL_5J7L_025 HL_01472.4 | |
| HL_4U1U_130 | 1/CA/1165:1171 | No text annotation Not in a motif group | homologous HL_5J7L_026 HL_68304.6 | |
| HL_4U1U_131 | 1/CA/1265:1270 | GNRA Not in a motif group | homologous HL_5J7L_027 HL_43074.18 | |
| HL_4U1U_132 | 1/CA/1314:1323 | No text annotation Not in a motif group | homologous HL_5J7L_028 HL_78061.2 | |
| HL_4U1U_133 | 1/CA/1356:1366 | No text annotation Not in a motif group | homologous HL_4LFB_030 HL_70505.1 | |
| HL_4U1U_134 | 1/CA/1449:1454 | UNCG Not in a motif group | homologous HL_4LFB_031 HL_79299.11 | |
| HL_4U1U_135 | 1/CA/1515:1520 | No text annotation Not in a motif group | homologous HL_4LFB_032 NA | |
| HL_4U1U_136 | 1/DA/59:68 | No text annotation Not in a motif group | homologous HL_5J7L_134 HL_29414.1 | |
| HL_4U1U_138 | 1/DA/123:128 | No text annotation Not in a motif group | homologous HL_4WF9_003 HL_62869.3 | |
| HL_4U1U_140 | 1/DA/158:168 | No text annotation Not in a motif group | homologous HL_5J7L_138 HL_81820.1 | |
| HL_4U1U_141 | 1/DA/194:201 | No text annotation Not in a motif group | geometric HL_5J7L_139 HL_23481.5 | |
| HL_4U1U_142 | 1/DA/225:230 | No text annotation Not in a motif group | homologous HL_5J7L_140 HL_35894.3 | |
| HL_4U1U_143 | 1/DA/246:252 | No text annotation Not in a motif group | homologous HL_5J7L_141 HL_67216.5 | |
| HL_4U1U_144 | 1/DA/305:312 | T-loop with 1 bulged base Not in a motif group | homologous HL_5J7L_142 HL_68493.6 | |
| HL_4U1U_145 | 1/DA/319:323 | No text annotation Not in a motif group | homologous HL_5J7L_143 HL_98557.5 | |
| HL_4U1U_146 | 1/DA/327:335 | No text annotation Not in a motif group | homologous HL_5J7L_144 HL_08002.6 | |
| HL_4U1U_147 | 1/DA/382:392 | No text annotation Not in a motif group | homologous HL_5J7L_145 HL_91503.3 | |
| HL_4U1U_148 | 1/DA/410:417 | No text annotation Not in a motif group | homologous HL_5J7L_146 HL_32512.8 | |
| HL_4U1U_149 | 1/DA/462:467 | No text annotation Not in a motif group | homologous HL_7RQB_015 HL_43074.18 | |
| HL_4U1U_150 | 1/DA/487:493 | No text annotation Not in a motif group | homologous HL_5J7L_148 HL_68304.6 | |
| HL_4U1U_151 | 1/DA/543:550 | No text annotation Not in a motif group | homologous HL_5J7L_149 HL_59297.1 | |
| HL_4U1U_152 | 1/DA/566:575 | T-loop with 2 stacked bulged bases Not in a motif group | geometric HL_5J7L_150 HL_33239.17 | |
| HL_4U1U_153 | 1/DA/611:617 | No text annotation Not in a motif group | homologous HL_5J7L_151 HL_25660.1 | |
| HL_4U1U_154 | 1/DA/629:634 | GNRA Not in a motif group | homologous HL_5J7L_152 HL_43074.18 | |
| HL_4U1U_155 | 1/DA/641:647 | No text annotation Not in a motif group | homologous HL_5J7L_153 HL_16419.1 | |
| HL_4U1U_156 | 1/DA/712:719 | No text annotation Not in a motif group | homologous HL_5J7L_154 HL_93727.5 | |
| HL_4U1U_157 | 1/DA/744:753 | No text annotation Not in a motif group | homologous HL_4WF9_023 HL_39334.5 | |
| HL_4U1U_158 | 1/DA/779:785 | No text annotation Not in a motif group | homologous HL_7RQB_024 HL_16898.3 | |
| HL_4U1U_159 | 1/DA/826:831 | No text annotation Not in a motif group | homologous HL_7RQB_025 HL_15942.5 | |
| HL_4U1U_161 | 1/DA/955:962 | GNRA Not in a motif group | homologous HL_4WF9_027 HL_43074.18 | |
| HL_4U1U_162 | 1/DA/978:985 | No text annotation Not in a motif group | homologous HL_7A0S_027 HL_72451.5 | |
| HL_4U1U_163 | 1/DA/1059:1079 | No text annotation Not in a motif group | ||
| HL_4U1U_164 | 1/DA/1092:1099 | No text annotation Not in a motif group | homologous HL_6PRV_002 HL_93727.5 | |
| HL_4U1U_165 | 1/DA/1168:1181 | No text annotation Not in a motif group | ||
| HL_4U1U_166 | 1/DA/1222:1227 | Other HL Not in a motif group | homologous HL_5J7L_164 HL_43074.18 | |
| HL_4U1U_167 | 1/DA/1281:1289 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5J7L_165 HL_33239.17 | |
| HL_4U1U_168 | 1/DA/1324:1330 | No text annotation Not in a motif group | homologous HL_5J7L_166 HL_86880.5 | |
| HL_4U1U_169 | 1/DA/1363:1368 | Other HL Not in a motif group | homologous HL_5J7L_167 HL_43074.18 | |
| HL_4U1U_170 | 1/DA/1389:1398 | No text annotation Not in a motif group | homologous HL_5J7L_168 HL_78457.4 | |
| HL_4U1U_171 | 1/DA/1451:1459 | No text annotation Not in a motif group | homologous HL_5J7L_169 HL_71540.1 | |
| HL_4U1U_172 | 1/DA/1492:1498 | No text annotation Not in a motif group | homologous HL_5J7L_170 HL_86880.5 | |
| HL_4U1U_174 | 1/DA/1565:1568 | No text annotation Not in a motif group | homologous HL_5J7L_172 HL_69353.7 | |
| HL_4U1U_175 | 1/DA/1612:1619 | No text annotation Not in a motif group | homologous HL_7A0S_040 HL_66171.3 | |
| HL_4U1U_176 | 1/DA/1630:1636 | GNRA with one bulged base Not in a motif group | homologous HL_5J7L_174 HL_02361.6 | |
| HL_4U1U_177 | 1/DA/1691:1696 | UNCG Not in a motif group | geometric HL_4LFB_011 HL_79299.11 | |
| HL_4U1U_178 | 1/DA/1728:1731 | No text annotation Not in a motif group | ||
| HL_4U1U_179 | 1/DA/1752:1756 | No text annotation Not in a motif group | homologous HL_5J7L_177 HL_79272.3 | |
| HL_4U1U_180 | 1/DA/1777:1787 | No text annotation Not in a motif group | homologous HL_4WF9_043 HL_43613.4 | |
| HL_4U1U_181 | 1/DA/1806:1811 | No text annotation Not in a motif group | homologous HL_5J7L_179 HL_32527.3 | |
| HL_4U1U_182 | 1/DA/1868:1873 | Other HL Not in a motif group | homologous HL_5J7L_180 HL_43074.18 | |
| HL_4U1U_183 | 1/DA/1910:1920 | No text annotation Not in a motif group | geometric HL_5TBW_049 HL_98248.1 | |
| HL_4U1U_184 | 1/DA/1949:1957 | No text annotation Not in a motif group | homologous HL_5J7L_182 HL_53760.4 | |
| HL_4U1U_185 | 1/DA/2027:2036 | No text annotation Not in a motif group | homologous HL_4WF9_047 HL_90642.5 | |
| HL_4U1U_187 | 1/DA/2209:2215 | No text annotation Not in a motif group | homologous HL_5J7L_185 HL_16845.5 | |
| HL_4U1U_188 | 1/DA/2248:2256 | No text annotation Not in a motif group | homologous HL_5J7L_186 NA | |
| HL_4U1U_189 | 1/DA/2264:2276 | No text annotation Not in a motif group | homologous HL_5J7L_187 HL_19870.5 | |
| HL_4U1U_190 | 1/DA/2303:2313 | No text annotation Not in a motif group | homologous HL_7RQB_055 HL_11805.3 | |
| HL_4U1U_191 | 1/DA/2324:2331 | No text annotation Not in a motif group | homologous HL_5J7L_189 HL_46142.8 | |
| HL_4U1U_192 | 1/DA/2356:2361 | Other HL Not in a motif group | homologous HL_5J7L_190 HL_43074.18 | |
| HL_4U1U_193 | 1/DA/2374:2379 | GNRA Not in a motif group | homologous HL_5J7L_191 HL_43074.18 | |
| HL_4U1U_194 | 1/DA/2404:2413 | No text annotation Not in a motif group | homologous HL_5J7L_192 HL_48376.4 | |
| HL_4U1U_195 | 1/DA/2471:2479 | No text annotation Not in a motif group | homologous HL_5J7L_193 HL_36421.5 | |
| HL_4U1U_196 | 1/DA/2528:2535 | No text annotation Not in a motif group | homologous HL_5J7L_194 HL_92681.5 | |
| HL_4U1U_197 | 1/DA/2551:2557 | No text annotation Not in a motif group | homologous HL_4WF9_058 HL_26055.6 | |
| HL_4U1U_198 | 1/DA/2594:2599 | GNRA Not in a motif group | homologous HL_5J7L_196 HL_43074.18 | |
| HL_4U1U_199 | 1/DA/2658:2663 | GNRA Not in a motif group | geometric HL_2OIU_001 HL_43074.18 | |
| HL_4U1U_200 | 1/DA/2701:2706 | Ribsomal LSU H95 Not in a motif group | homologous HL_5J7L_198 HL_67719.1 | |
| HL_4U1U_201 | 1/DA/2745:2759 | No text annotation Not in a motif group | homologous HL_5J7L_199 HL_56677.5 | |
| HL_4U1U_203 | 1/DA/2819:2827 | No text annotation Not in a motif group | homologous HL_5J7L_201 HL_05018.6 | |
| HL_4U1U_204 | 1/DA/2856:2861 | No text annotation Not in a motif group | homologous HL_7A0S_068 HL_43074.18 | |
| HL_4U1U_205 | 1/DB/38:44 | No text annotation Not in a motif group | homologous HL_7RQB_070 HL_02733.5 | |
| HL_4U1U_206 | 1/DB/86:90 | No text annotation Not in a motif group | homologous HL_5J7L_204 HL_36982.3 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4U1U_023 | No text annotation | ||
| HL_4U1U_057 | No text annotation | ||
| HL_4U1U_083 | No text annotation | ||
| HL_4U1U_105 | No text annotation | ||
| HL_4U1U_108 | No text annotation | ||
| HL_4U1U_126 | No text annotation | ||
| HL_4U1U_137 | No text annotation | ||
| HL_4U1U_139 | No text annotation | ||
| HL_4U1U_160 | No text annotation | ||
| HL_4U1U_173 | UNCG | ||
| HL_4U1U_186 | UNCG | ||
| HL_4U1U_202 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4U1U_001 | 1/AA/30:32, 1/AA/552:553 | Single bulged G Not in a motif group | homologous IL_5J7L_001 IL_59137.10 | |
| IL_4U1U_002 | 1/AA/44:45, 1/AA/396:398 | Single bulged A Not in a motif group | homologous IL_5J7L_002 IL_80007.16 | |
| IL_4U1U_003 | 1/AA/47:52, 1/AA/359:361 | No text annotation Not in a motif group | geometric IL_5J7L_003 IL_34626.4 | |
| IL_4U1U_004 | 1/AA/54:56, 1/AA/356:357 | Minor groove platform Not in a motif group | homologous IL_4LFB_004 IL_06437.11 | |
| IL_4U1U_005 | 1/AA/63:66, 1/AA/103:104 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_005 IL_13730.12 | |
| IL_4U1U_006 | 1/AA/67:69, 1/AA/99:102 | Minor groove platform with extra cWW Not in a motif group | homologous IL_5J7L_006 IL_87332.1 | |
| IL_4U1U_007 | 1/AA/70:73, 1/AA/97:98 | Minor groove platform Not in a motif group | homologous IL_5J7L_007 IL_94431.4 | |
| IL_4U1U_008 | 1/AA/75:76, 1/AA/93:95 | Single bulged G Not in a motif group | geometric IL_7A0S_099 IL_59137.10 | |
| IL_4U1U_009 | 1/AA/128:131, 1/AA/231:233 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5J7L_009 IL_55456.1 | |
| IL_4U1U_010 | 1/AA/132:136, 1/AA/227:230 | Minor groove platform related Not in a motif group | homologous IL_5J7L_010 IL_58764.1 | |
| IL_4U1U_011 | 1/AA/144:146, 1/AA/176:178 | Isolated cWH basepair Not in a motif group | homologous IL_5J7L_011 IL_42589.6 | |
| IL_4U1U_012 | 1/AA/147:153, 1/AA/168:175 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_5J7L_012 IL_92440.5 | |
| IL_4U1U_013 | 1/AA/203:206, 1/AA/213:214 | No text annotation Not in a motif group | ||
| IL_4U1U_014 | 1/AA/242:247, 1/AA/277:284 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_5J7L_014 IL_29549.9 | |
| IL_4U1U_015 | 1/AA/249:252, 1/AA/274:275 | No text annotation Not in a motif group | homologous IL_5J7L_015 IL_83121.7 | |
| IL_4U1U_016 | 1/AA/292:293, 1/AA/304:308 | C-loop Not in a motif group | homologous IL_6CZR_125 IL_08376.2 | |
| IL_4U1U_017 | 1/AA/367:369, 1/AA/392:393 | Single bulged U Not in a motif group | geometric IL_5J7L_017 IL_83039.11 | |
| IL_4U1U_018 | 1/AA/371:375, 1/AA/389:390 | C-loop Not in a motif group | geometric IL_5J7L_018 IL_08376.2 | |
| IL_4U1U_019 | 1/AA/375:376, 1/AA/387:389 | Single bulged G Not in a motif group | homologous IL_5J7L_019 IL_59137.10 | |
| IL_4U1U_020 | 1/AA/409:416, 1/AA/427:433 | No text annotation Not in a motif group | homologous IL_4LFB_017 IL_45257.1 | |
| IL_4U1U_021 | 1/AA/440:442, 1/AA/492:497 | No text annotation Not in a motif group | homologous IL_5J7L_021 IL_45289.1 | |
| IL_4U1U_022 | 1/AA/446:450, 1/AA/483:488 | tSH-tHW-tWW Not in a motif group | homologous IL_5J7L_022 IL_98711.1 | |
| IL_4U1U_023 | 1/AA/450:455, 1/AA/477:483 | No text annotation Not in a motif group | geometric IL_5J7L_023 IL_70801.1 | |
| IL_4U1U_024 | 1/AA/504:511, 1/AA/540:541 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5J7L_024 IL_15861.6 | |
| IL_4U1U_025 | 1/AA/515:521, 1/AA/528:536 | No text annotation Not in a motif group | geometric IL_4V88_415 IL_04667.1 | |
| IL_4U1U_026 | 1/AA/569:575, 1/AA/880:881 | No text annotation Not in a motif group | homologous IL_5J7L_026 IL_19222.1 | |
| IL_4U1U_027 | 1/AA/580:584, 1/AA/757:761 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_027 IL_39521.5 | |
| IL_4U1U_028 | 1/AA/594:596, 1/AA/644:645 | Major groove platform Not in a motif group | homologous IL_5J7L_028 IL_80663.10 | |
| IL_4U1U_029 | 1/AA/596:598, 1/AA/640:644 | Major groove minor groove platform with extra cWW Not in a motif group | geometric IL_4WF9_012 IL_96042.4 | |
| IL_4U1U_030 | 1/AA/605:612, 1/AA/628:633 | No text annotation Not in a motif group | homologous IL_5J7L_030 IL_01502.1 | |
| IL_4U1U_031 | 1/AA/654:655, 1/AA/751:754 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_5J7L_031 IL_80663.10 | |
| IL_4U1U_032 | 1/AA/658:659, 1/AA/746:748 | Single stack bend Not in a motif group | homologous IL_5J7L_032 IL_04038.4 | |
| IL_4U1U_033 | 1/AA/662:666, 1/AA/740:743 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_033 IL_85877.10 | |
| IL_4U1U_034 | 1/AA/684:688, 1/AA/699:706 | Kink-turn Not in a motif group | homologous IL_5J7L_035 IL_90922.1 | |
| IL_4U1U_035 | 1/AA/774:778, 1/AA/804:805 | Left turn Not in a motif group | homologous IL_5J7L_036 IL_19389.4 | |
| IL_4U1U_036 | 1/AA/779:783, 1/AA/799:803 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_037 IL_39521.5 | |
| IL_4U1U_037 | 1/AA/887:894, 1/AA/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_5J7L_038 IL_24606.1 | |
| IL_4U1U_038 | 1/AA/922:923, 1/AA/1393:1395 | Single bulged A Not in a motif group | homologous IL_5J7L_039 IL_80007.16 | |
| IL_4U1U_039 | 1/AA/925:927, 1/AA/1390:1391 | Single bulged G Not in a motif group | homologous IL_4LFB_036 IL_59137.10 | |
| IL_4U1U_040 | 1/AA/933:935, 1/AA/1380:1384 | Minor groove platform Not in a motif group | homologous IL_4LFB_037 IL_94431.4 | |
| IL_4U1U_041 | 1/AA/953:954, 1/AA/1226:1228 | Minor groove platform Not in a motif group | homologous IL_5J7L_042 IL_06437.11 | |
| IL_4U1U_042 | 1/AA/993:997, 1/AA/1044:1045 | Minor groove platform Not in a motif group | homologous IL_5J7L_043 IL_94431.4 | |
| IL_4U1U_043 | 1/AA/998:999, 1/AA/1041:1043 | Single stack bend Not in a motif group | homologous IL_5J7L_044 IL_04038.4 | |
| IL_4U1U_044 | 1/AA/1048:1050, 1/AA/1208:1209 | Single bulged U Not in a motif group | homologous IL_5J7L_046 IL_83039.11 | |
| IL_4U1U_045 | 1/AA/1052:1056, 1/AA/1204:1206 | Isolated cWS basepair Not in a motif group | homologous IL_4LFB_044 IL_67621.5 | |
| IL_4U1U_046 | 1/AA/1057:1058, 1/AA/1199:1203 | Minor groove platform Not in a motif group | homologous IL_5J7L_048 IL_06437.11 | |
| IL_4U1U_047 | 1/AA/1060:1061, 1/AA/1195:1197 | Single bulged A Not in a motif group | geometric IL_5J7L_049 IL_80007.16 | |
| IL_4U1U_048 | 1/AA/1061:1063, 1/AA/1193:1195 | No text annotation Not in a motif group | homologous IL_5J7L_050 IL_01312.13 | |
| IL_4U1U_049 | 1/AA/1124:1128, 1/AA/1144:1149 | No text annotation Not in a motif group | homologous IL_5J7L_051 IL_58346.1 | |
| IL_4U1U_050 | 1/AA/1129:1132, 1/AA/1142:1143 | Minor groove platform Not in a motif group | homologous IL_5J7L_052 IL_94431.4 | |
| IL_4U1U_051 | 1/AA/1158:1161, 1/AA/1175:1181 | No text annotation Not in a motif group | homologous IL_5J7L_053 IL_42032.1 | |
| IL_4U1U_052 | 1/AA/1247:1253, 1/AA/1284:1290 | No text annotation Not in a motif group | homologous IL_5J7L_054 IL_09129.1 | |
| IL_4U1U_053 | 1/AA/1255:1258, 1/AA/1277:1282 | No text annotation Not in a motif group | homologous IL_5J7L_055 IL_75461.2 | |
| IL_4U1U_054 | 1/AA/1259:1263, 1/AA/1272:1276 | Triple sheared Not in a motif group | homologous IL_5J7L_056 IL_56467.6 | |
| IL_4U1U_055 | 1/AA/1303:1308, 1/AA/1329:1334 | No text annotation Not in a motif group | homologous IL_5J7L_057 IL_19954.1 | |
| IL_4U1U_056 | 1/AA/1399:1401, 1/AA/1501:1504 | No text annotation Not in a motif group | geometric IL_4V88_463 IL_36143.2 | |
| IL_4U1U_057 | 1/AA/1401:1404, 1/AA/1497:1501 | No text annotation Not in a motif group | ||
| IL_4U1U_058 | 1/AA/1405:1407, 1/AA/1494:1496 | No text annotation Not in a motif group | geometric IL_4V88_465 IL_01312.13 | |
| IL_4U1U_059 | 1/AA/1407:1409, 1/AA/1491:1494 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_1U6B_001 IL_01312.13 | |
| IL_4U1U_060 | 1/AA/1412:1415, 1/AA/1485:1488 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_6CZR_168 IL_85877.10 | |
| IL_4U1U_061 | 1/AA/1416:1419, 1/AA/1481:1484 | Double sheared Not in a motif group | homologous IL_5J7L_062 IL_09705.7 | |
| IL_4U1U_062 | 1/AA/1430:1435, 1/AA/1466:1470 | Triple sheared related Not in a motif group | homologous IL_5J7L_063 IL_64879.1 | |
| IL_4U1U_063 | 1/AA/1440:1442, 1/AA/1460:1461 | Minor groove platform Not in a motif group | homologous IL_5J7L_064 IL_06437.11 | |
| IL_4U1U_064 | 1/AA/1445:1448, 1/AA/1455:1457 | No text annotation Not in a motif group | homologous IL_5J7L_065 IL_02284.3 | |
| IL_4U1U_065 | 1/BA/24:30, 1/BA/510:516 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_5J7L_245 IL_66414.5 | |
| IL_4U1U_066 | 1/BA/36:37, 1/BA/442:444 | Single bulged A Not in a motif group | homologous IL_5J7L_246 IL_80007.16 | |
| IL_4U1U_067 | 1/BA/43:44, 1/BA/434:436 | Minor groove platform Not in a motif group | homologous IL_5J7L_247 IL_06437.11 | |
| IL_4U1U_068 | 1/BA/75:76, 1/BA/110:112 | No text annotation Not in a motif group | ||
| IL_4U1U_069 | 1/BA/81:85, 1/BA/97:105 | No text annotation Not in a motif group | homologous IL_5J7L_248 IL_85931.1 | |
| IL_4U1U_070 | 1/BA/183:184, 1/BA/212:214 | Single stack bend Not in a motif group | homologous IL_5J7L_249 IL_04038.4 | |
| IL_4U1U_071 | 1/BA/188:194, 1/BA/201:208 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_250 IL_04346.5 | |
| IL_4U1U_072 | 1/BA/239:245, 1/BA/253:258 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_251 IL_35110.5 | |
| IL_4U1U_073 | 1/BA/269:271, 1/BA/366:370 | No text annotation Not in a motif group | homologous IL_5J7L_252 IL_47972.1 | |
| IL_4U1U_074 | 1/BA/274:281, 1/BA/359:363 | No text annotation Not in a motif group | homologous IL_5J7L_253 IL_77870.1 | |
| IL_4U1U_075 | 1/BA/293:295, 1/BA/343:347 | No text annotation Not in a motif group | homologous IL_5J7L_254 IL_69440.1 | |
| IL_4U1U_076 | 1/BA/481:484, 1/BA/496:509 | No text annotation Not in a motif group | homologous IL_5J7L_255 IL_60992.5 | |
| IL_4U1U_077 | 1/BA/536:539, 1/BA/554:557 | Double sheared Not in a motif group | homologous IL_5J7L_256 IL_09705.7 | |
| IL_4U1U_078 | 1/BA/564:566, 1/BA/575:577 | No text annotation Not in a motif group | homologous IL_5J7L_257 IL_01312.13 | |
| IL_4U1U_079 | 1/BA/606:610, 1/BA/618:622 | AAA cross-strand stack Not in a motif group | homologous IL_5J7L_258 IL_56467.6 | |
| IL_4U1U_080 | 1/BA/672:674, 1/BA/806:808 | No text annotation Not in a motif group | homologous IL_7RQB_017 IL_01312.13 | |
| IL_4U1U_081 | 1/BA/674:678, 1/BA/799:806 | tHW-tHW cross-strand stack Not in a motif group | geometric IL_5J7L_260 IL_17470.5 | |
| IL_4U1U_082 | 1/BA/697:698, 1/BA/763:765 | Single bulged A Not in a motif group | homologous IL_7A0S_016 IL_80007.16 | |
| IL_4U1U_083 | 1/BA/702:703, 1/BA/728:730 | Single bulged G Not in a motif group | geometric IL_5J7L_262 IL_59137.10 | |
| IL_4U1U_084 | 1/BA/703:707, 1/BA/724:728 | Triple sheared Not in a motif group | homologous IL_5J7L_263 IL_56467.6 | |
| IL_4U1U_085 | 1/BA/738:740, 1/BA/757:758 | Major groove platform Not in a motif group | homologous IL_5J7L_264 IL_80663.10 | |
| IL_4U1U_086 | 1/BA/775:777, 1/BA/787:791 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_265 IL_90991.5 | |
| IL_4U1U_087 | 1/BA/844:847, 1/BA/933:934 | Other IL Not in a motif group | geometric IL_5J7L_267 IL_31836.1 | |
| IL_4U1U_088 | 1/BA/847:848, 1/BA/930:933 | Stack outside cWW Not in a motif group | homologous IL_5J7L_268 IL_37629.1 | |
| IL_4U1U_089 | 1/BA/850:851, 1/BA/926:928 | Single stack bend Not in a motif group | homologous IL_5J7L_269 IL_04038.4 | |
| IL_4U1U_090 | 1/BA/856:862, 1/BA/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_5J7L_270 IL_93830.2 | |
| IL_4U1U_091 | 1/BA/862:863, 1/BA/913:915 | Single bulged G Not in a motif group | homologous IL_5J7L_271 IL_59137.10 | |
| IL_4U1U_092 | 1/BA/864:868, 1/BA/909:912 | C-loop Not in a motif group | homologous IL_5J7L_272 IL_63596.4 | |
| IL_4U1U_093 | 1/BA/870:872, 1/BA/905:907 | No text annotation Not in a motif group | homologous IL_5J7L_273 IL_01312.13 | |
| IL_4U1U_094 | 1/BA/875:879, 1/BA/898:902 | Triple sheared Not in a motif group | homologous IL_5J7L_274 IL_56467.6 | |
| IL_4U1U_095 | 1/BA/880:881, 1/BA/895:897 | No text annotation Not in a motif group | homologous IL_5J7L_275 NA | |
| IL_4U1U_096 | 1/BA/994:996, 1/BA/1159:1160 | Single bulged C Not in a motif group | homologous IL_5J7L_276 IL_61258.10 | |
| IL_4U1U_097 | 1/BA/998:1002, 1/BA/1153:1157 | UAA/GAN Not in a motif group | homologous IL_5J7L_277 IL_53523.5 | |
| IL_4U1U_098 | 1/BA/1004:1011, 1/BA/1150:1151 | SSU/LSU pseudoknot Not in a motif group | geometric IL_5J7L_278 IL_15861.6 | |
| IL_4U1U_099 | 1/BA/1011:1013, 1/BA/1149:1150 | Single bulged U Not in a motif group | homologous IL_5J7L_279 IL_83039.11 | |
| IL_4U1U_100 | 1/BA/1018:1024, 1/BA/1140:1144 | No text annotation Not in a motif group | geometric IL_5J7L_280 IL_57188.3 | |
| IL_4U1U_101 | 1/BA/1024:1030, 1/BA/1124:1140 | No text annotation Not in a motif group | homologous IL_5J7L_281 IL_22615.1 | |
| IL_4U1U_102 | 1/BA/1031:1034, 1/BA/1121:1123 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5J7L_282 IL_55456.1 | |
| IL_4U1U_103 | 1/BA/1038:1041, 1/BA/1114:1117 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_283 IL_85877.10 | |
| IL_4U1U_105 | 1/BA/1059:1062, 1/BA/1076:1079 | No text annotation Not in a motif group | homologous IL_5J7L_285 IL_23544.2 | |
| IL_4U1U_106 | 1/BA/1087:1090, 1/BA/1101:1102 | Multiple bulged bases Not in a motif group | geometric IL_6IV9_001 IL_13730.12 | |
| IL_4U1U_107 | 1/BA/1196:1198, 1/BA/1247:1250 | Isolated cWS basepair Not in a motif group | homologous IL_5J7L_286 IL_67621.5 | |
| IL_4U1U_108 | 1/BA/1202:1206, 1/BA/1240:1243 | No text annotation Not in a motif group | homologous IL_5J7L_287 IL_91920.1 | |
| IL_4U1U_109 | 1/BA/1208:1215, 1/BA/1234:1238 | Kink-turn Not in a motif group | homologous IL_5J7L_288 IL_29549.9 | |
| IL_4U1U_110 | 1/BA/1262:1269, 1/BA/2011:2017 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_289 IL_04346.5 | |
| IL_4U1U_111 | 1/BA/1310:1313, 1/BA/1603:1604 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_050 IL_70995.6 | |
| IL_4U1U_112 | 1/BA/1319:1323, 1/BA/1331:1333 | C-loop Not in a motif group | homologous IL_5J7L_291 IL_08376.2 | |
| IL_4U1U_113 | 1/BA/1351:1355, 1/BA/1376:1380 | UAA/GAN Not in a motif group | homologous IL_5J7L_292 IL_34907.2 | |
| IL_4U1U_114 | 1/BA/1357:1361, 1/BA/1370:1374 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_293 IL_39521.5 | |
| IL_4U1U_115 | 1/BA/1413:1416, 1/BA/1582:1589 | No text annotation Not in a motif group | ||