Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7M4W_0011/A/66:75No text annotation
Not in a motif group
homologous
HL_7RQB_001
HL_99167.1
HL_7M4W_0021/A/92:105No text annotation
Not in a motif group
geometric
HL_2ZZM_002
HL_23083.1
HL_7M4W_0031/A/130:135No text annotation
Not in a motif group
homologous
HL_4WF9_003
HL_75407.1
HL_7M4W_0041/A/144:149No text annotation
Not in a motif group
geometric
HL_1WZ2_007
HL_10278.1
HL_7M4W_0051/A/165:175No text annotation
Not in a motif group
homologous
HL_5J7L_138
HL_81820.1
HL_7M4W_0061/A/201:208No text annotation
Not in a motif group
homologous
HL_4WF9_006
HL_06192.2
HL_7M4W_0071/A/232:237No text annotation
Not in a motif group
geometric
HL_3DIL_004
HL_84503.2
HL_7M4W_0081/A/253:259No text annotation
Not in a motif group
homologous
HL_7RQB_008
HL_67216.7
HL_7M4W_0091/A/307:314T-loop with 1 bulged base
Not in a motif group
homologous
HL_5J7L_142
HL_89380.2
HL_7M4W_0101/A/321:325No text annotation
Not in a motif group
homologous
HL_5J7L_143
HL_75407.1
HL_7M4W_0111/A/329:337No text annotation
Not in a motif group
homologous
HL_5J7L_144
HL_08002.8
HL_7M4W_0121/A/381:391No text annotation
Not in a motif group
homologous
HL_5J7L_145
HL_91503.4
HL_7M4W_0131/A/409:416No text annotation
Not in a motif group
homologous
HL_7A0S_014
HL_96598.1
HL_7M4W_0141/A/461:466GNRA
Not in a motif group
homologous
HL_4WF9_015
HL_42097.1
HL_7M4W_0151/A/486:492No text annotation
Not in a motif group
homologous
HL_7RQB_016
HL_42097.1
HL_7M4W_0161/A/542:548No text annotation
Not in a motif group
geometric
HL_5U3G_001
HL_87030.2
HL_7M4W_0171/A/564:573T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_5J7L_150
HL_89380.2
HL_7M4W_0181/A/609:615No text annotation
Not in a motif group
homologous
HL_5J7L_151
HL_90617.2
HL_7M4W_0191/A/627:632GNRA
Not in a motif group
homologous
HL_5J7L_152
HL_42097.1
HL_7M4W_0201/A/639:645No text annotation
Not in a motif group
homologous
HL_7RQB_021
HL_42097.1
HL_7M4W_0211/A/710:717No text annotation
Not in a motif group
homologous
HL_5J7L_154
HL_84085.2
HL_7M4W_0221/A/742:751No text annotation
Not in a motif group
homologous
HL_4WF9_023
HL_39334.6
HL_7M4W_0231/A/777:783No text annotation
Not in a motif group
homologous
HL_5J7L_156
HL_74322.1
HL_7M4W_0241/A/824:829No text annotation
Not in a motif group
homologous
HL_7RQB_025
HL_64365.1
HL_7M4W_0261/A/951:960No text annotation
Not in a motif group
homologous
HL_5J7L_159
NA
HL_7M4W_0271/A/975:982No text annotation
Not in a motif group
homologous
HL_5J7L_160
HL_64430.2
HL_7M4W_0281/A/1169:1173No text annotation
Not in a motif group
geometric
HL_6U8D_003
HL_89098.1
HL_7M4W_0291/A/1217:1222No text annotation
Not in a motif group
homologous
HL_7A0S_031
HL_87030.2
HL_7M4W_0301/A/1276:1284T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_5J7L_165
HL_89380.2
HL_7M4W_0311/A/1319:1325No text annotation
Not in a motif group
homologous
HL_5J7L_166
HL_46680.1
HL_7M4W_0321/A/1358:1363Other HL
Not in a motif group
homologous
HL_5J7L_167
HL_87030.2
HL_7M4W_0331/A/1384:1393No text annotation
Not in a motif group
homologous
HL_5J7L_168
HL_69023.2
HL_7M4W_0341/A/1446:1454No text annotation
Not in a motif group
geometric
HL_5J7L_169
HL_53837.1
HL_7M4W_0351/A/1487:1493No text annotation
Not in a motif group
homologous
HL_5J7L_170
HL_46680.1
HL_7M4W_0361/A/1530:1535No text annotation
Not in a motif group
HL_7M4W_0371/A/1563:1566No text annotation
Not in a motif group
homologous
HL_5J7L_172
HL_38927.2
HL_7M4W_0381/A/1610:1617No text annotation
Not in a motif group
homologous
HL_4WF9_038
HL_64430.2
HL_7M4W_0391/A/1628:1634GNRA with one bulged base
Not in a motif group
homologous
HL_5J7L_174
HL_42097.1
HL_7M4W_0401/A/1689:1694UNCG
Not in a motif group
geometric
HL_5LYS_002
HL_03562.2
HL_7M4W_0411/A/1723:1729No text annotation
Not in a motif group
HL_7M4W_0421/A/1748:1752No text annotation
Not in a motif group
homologous
HL_7RQB_044
HL_76539.2
HL_7M4W_0431/A/1773:1783No text annotation
Not in a motif group
homologous
HL_7RQB_045
HL_43613.5
HL_7M4W_0441/A/1802:1807No text annotation
Not in a motif group
homologous
HL_7RQB_046
HL_42097.1
HL_7M4W_0451/A/1864:1869Other HL
Not in a motif group
homologous
HL_5J7L_180
HL_42097.1
HL_7M4W_0461/A/1906:1916No text annotation
Not in a motif group
homologous
HL_5J7L_181
NA
HL_7M4W_0471/A/1945:1953No text annotation
Not in a motif group
homologous
HL_5J7L_182
HL_51824.1
HL_7M4W_0481/A/2023:2032No text annotation
Not in a motif group
HL_7M4W_0501/A/2205:2211No text annotation
Not in a motif group
homologous
HL_5J7L_185
HL_16845.6
HL_7M4W_0511/A/2244:2252No text annotation
Not in a motif group
homologous
HL_4WF9_049
HL_53171.2
HL_7M4W_0521/A/2260:2272No text annotation
Not in a motif group
homologous
HL_5J7L_187
HL_19870.6
HL_7M4W_0531/A/2299:2309No text annotation
Not in a motif group
homologous
HL_7RQB_055
HL_11805.3
HL_7M4W_0541/A/2320:2327No text annotation
Not in a motif group
homologous
HL_5J7L_189
HL_12078.2
HL_7M4W_0551/A/2351:2358No text annotation
Not in a motif group
homologous
HL_4WF9_053
HL_09136.1
HL_7M4W_0561/A/2370:2375GNRA
Not in a motif group
homologous
HL_5J7L_191
HL_42097.1
HL_7M4W_0571/A/2400:2409No text annotation
Not in a motif group
homologous
HL_5J7L_192
HL_30784.2
HL_7M4W_0581/A/2467:2475No text annotation
Not in a motif group
homologous
HL_4WF9_056
HL_06192.2
HL_7M4W_0591/A/2524:2531No text annotation
Not in a motif group
homologous
HL_5J7L_194
HL_88526.2
HL_7M4W_0601/A/2547:2553No text annotation
Not in a motif group
homologous
HL_5J7L_195
NA
HL_7M4W_0611/A/2590:2595GNRA
Not in a motif group
homologous
HL_5J7L_196
HL_42097.1
HL_7M4W_0621/A/2654:2659No text annotation
Not in a motif group
geometric
HL_7RQB_064
HL_42097.1
HL_7M4W_0631/A/2697:2702Ribsomal LSU H95
Not in a motif group
homologous
HL_5J7L_198
HL_46680.1
HL_7M4W_0641/A/2741:2755No text annotation
Not in a motif group
homologous
HL_5J7L_199
HL_56677.7
HL_7M4W_0651/A/2792:2795No text annotation
Not in a motif group
geometric
HL_4V88_192
HL_53837.1
HL_7M4W_0661/A/2815:2823No text annotation
Not in a motif group
homologous
HL_7RQB_068
HL_27930.1
HL_7M4W_0671/A/2852:2857No text annotation
Not in a motif group
homologous
HL_7A0S_068
HL_42097.1
HL_7M4W_0681/B/36:42No text annotation
Not in a motif group
homologous
HL_5J7L_203
HL_87939.1
HL_7M4W_0691/B/83:88No text annotation
Not in a motif group
homologous
HL_5J7L_204
HL_38927.2
HL_7M4W_0701/a/14:24No text annotation
Not in a motif group
homologous
HL_5J7L_001
HL_89881.2
HL_7M4W_0711/a/82:85No text annotation
Not in a motif group
geometric
HL_5U30_001
HL_53837.1
HL_7M4W_0721/a/154:159GNRA
Not in a motif group
homologous
HL_5J7L_003
HL_42097.1
HL_7M4W_0731/a/182:187UNCG
Not in a motif group
geometric
HL_5Y85_004
HL_03562.2
HL_7M4W_0741/a/203:208No text annotation
Not in a motif group
geometric
HL_1WZ2_007
HL_10278.1
HL_7M4W_0751/a/255:263No text annotation
Not in a motif group
homologous
HL_5J7L_006
HL_69023.2
HL_7M4W_0761/a/292:297GNRA
Not in a motif group
homologous
HL_5J7L_007
HL_42097.1
HL_7M4W_0771/a/316:329No text annotation
Not in a motif group
homologous
HL_4LFB_008
HL_81205.2
HL_7M4W_0781/a/338:343UNCG
Not in a motif group
homologous
HL_4LFB_009
HL_03562.2
HL_7M4W_0791/a/375:380GNRA
Not in a motif group
homologous
HL_5J7L_010
HL_42097.1
HL_7M4W_0801/a/415:420No text annotation
Not in a motif group
geometric
HL_5TBW_018
HL_34168.2
HL_7M4W_0811/a/458:466No text annotation
Not in a motif group
homologous
HL_5J7L_012
HL_84085.2
HL_7M4W_0821/a/518:525No text annotation
Not in a motif group
homologous
HL_4LFB_013
NA
HL_7M4W_0831/a/614:620No text annotation
Not in a motif group
homologous
HL_4LFB_014
HL_26881.1
HL_7M4W_0841/a/686:695No text annotation
Not in a motif group
homologous
HL_4LFB_015
HL_12326.1
HL_7M4W_0851/a/723:728Other HL
Not in a motif group
homologous
HL_5J7L_016
HL_87030.2
HL_7M4W_0861/a/783:793No text annotation
Not in a motif group
homologous
HL_5J7L_017
HL_12326.1
HL_7M4W_0871/a/838:842No text annotation
Not in a motif group
HL_7M4W_0881/a/859:864GNRA
Not in a motif group
homologous
HL_4LFB_019
HL_42097.1
HL_7M4W_0891/a/894:899GNRA
Not in a motif group
homologous
HL_4LFB_020
HL_42097.1
HL_7M4W_0901/a/960:969No text annotation
Not in a motif group
homologous
HL_4LFB_021
NA
HL_7M4W_0911/a/1009:1014GNRA
Not in a motif group
homologous
HL_4LFB_022
HL_42097.1
HL_7M4W_0921/a/1025:1030No text annotation
Not in a motif group
geometric
HL_5TBW_006
HL_98984.2
HL_7M4W_0931/a/1073:1078GNRA
Not in a motif group
homologous
HL_5J7L_023
HL_42097.1
HL_7M4W_0941/a/1086:1093No text annotation
Not in a motif group
homologous
HL_4LFB_025
HL_71554.2
HL_7M4W_0951/a/1131:1137No text annotation
Not in a motif group
homologous
HL_4LFB_026
HL_03562.2
HL_7M4W_0961/a/1161:1169No text annotation
Not in a motif group
geometric
HL_7A0S_056
HL_84085.2
HL_7M4W_0971/a/1262:1267Other HL
Not in a motif group
homologous
HL_4LFB_028
HL_42097.1
HL_7M4W_0981/a/1311:1320No text annotation
Not in a motif group
homologous
HL_4LFB_029
HL_89380.2
HL_7M4W_0991/a/1353:1363No text annotation
Not in a motif group
homologous
HL_4LFB_030
HL_96366.1
HL_7M4W_1001/a/1446:1451GNRA
Not in a motif group
geometric
HL_5B2T_001
HL_42097.1
HL_7M4W_1011/a/1512:1517No text annotation
Not in a motif group
homologous
HL_6CZR_103
NA

Problematic loops

#loop idProblemSequence
HL_7M4W_025No text annotation
HL_7M4W_049No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7M4W_0011/A/31:37,
1/A/509:515
Triple sheared with non-canonical cWW
Not in a motif group
geometric
IL_4WF9_001
IL_66414.6
IL_7M4W_0021/A/43:44,
1/A/441:443
Single bulged A
Not in a motif group
homologous
IL_5J7L_246
IL_37497.2
IL_7M4W_0031/A/50:51,
1/A/433:435
Minor groove platform
Not in a motif group
homologous
IL_5J7L_247
IL_42622.2
IL_7M4W_0041/A/88:92,
1/A/105:112
Kink-turn
Not in a motif group
geometric
IL_7RQB_004
IL_45067.2
IL_7M4W_0051/A/190:191,
1/A/219:221
Single stack bend
Not in a motif group
homologous
IL_7A0S_005
IL_76488.2
IL_7M4W_0061/A/195:201,
1/A/208:215
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
geometric
IL_5J7L_250
IL_04346.7
IL_7M4W_0071/A/246:252,
1/A/260:265
7x6 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_251
IL_76042.2
IL_7M4W_0081/A/276:279,
1/A/366:369
No text annotation
Not in a motif group
IL_7M4W_0091/A/279:282,
1/A/362:366
No text annotation
Not in a motif group
geometric
IL_5J7L_299
IL_68574.2
IL_7M4W_0101/A/295:297,
1/A/345:349
No text annotation
Not in a motif group
homologous
IL_5J7L_254
IL_69440.1
IL_7M4W_0111/A/305:307,
1/A/314:316
No text annotation
Not in a motif group
geometric
IL_2O3V_004
IL_95997.1
IL_7M4W_0121/A/480:483,
1/A/495:508
No text annotation
Not in a motif group
geometric
IL_7RQB_014
IL_60992.6
IL_7M4W_0131/A/535:538,
1/A/552:555
Double sheared
Not in a motif group
homologous
IL_5J7L_256
IL_09705.9
IL_7M4W_0141/A/562:564,
1/A/573:575
No text annotation
Not in a motif group
geometric
IL_7RQB_015
IL_95997.1
IL_7M4W_0151/A/604:608,
1/A/616:620
AAA cross-strand stack
Not in a motif group
homologous
IL_7RQB_016
IL_17136.1
IL_7M4W_0161/A/670:672,
1/A/804:806
No text annotation
Not in a motif group
geometric
IL_4WF9_020
IL_95997.1
IL_7M4W_0171/A/672:676,
1/A/797:804
tHW-tHW cross-strand stack
Not in a motif group
homologous
IL_5J7L_260
IL_17470.6
IL_7M4W_0181/A/695:696,
1/A/761:763
Single bulged A
Not in a motif group
geometric
IL_4V9F_025
IL_37497.2
IL_7M4W_0191/A/700:701,
1/A/726:728
Single bulged G
Not in a motif group
geometric
IL_7RQB_020
IL_00225.2
IL_7M4W_0201/A/701:705,
1/A/722:726
Triple sheared
Not in a motif group
homologous
IL_5J7L_263
IL_56467.8
IL_7M4W_0211/A/736:738,
1/A/755:756
Major groove platform
Not in a motif group
homologous
IL_5J7L_264
IL_27635.1
IL_7M4W_0221/A/740:742,
1/A/751:753
No text annotation
Not in a motif group
homologous
IL_7A0S_020
IL_95997.1
IL_7M4W_0231/A/773:775,
1/A/785:789
Multiple bulged bases
Not in a motif group
geometric
IL_5TBW_033
IL_90991.6
IL_7M4W_0241/A/835:836,
1/A/937:939
Single stack bend
Not in a motif group
homologous
IL_7A0S_022
IL_92001.1
IL_7M4W_0251/A/841:845,
1/A/930:932
No text annotation
Not in a motif group
IL_7M4W_0261/A/845:846,
1/A/928:930
No text annotation
Not in a motif group
IL_7M4W_0271/A/848:849,
1/A/924:926
Single stack bend
Not in a motif group
homologous
IL_5J7L_269
IL_76488.2
IL_7M4W_0281/A/854:860,
1/A/913:919
7x7 Sarcin-Ricin with intercalated A; G-bulge
Not in a motif group
homologous
IL_5J7L_270
IL_93830.3
IL_7M4W_0291/A/860:861,
1/A/911:913
Minor groove platform
Not in a motif group
geometric
IL_4V9F_034
IL_42622.2
IL_7M4W_0301/A/862:866,
1/A/907:910
C-loop
Not in a motif group
homologous
IL_4WF9_033
IL_02509.1
IL_7M4W_0311/A/868:870,
1/A/903:905
No text annotation
Not in a motif group
homologous
IL_5J7L_273
IL_95997.1
IL_7M4W_0321/A/991:993,
1/A/1157:1158
Single bulged C
Not in a motif group
homologous
IL_7RQB_035
IL_61258.12
IL_7M4W_0331/A/995:999,
1/A/1151:1155
UAA/GAN
Not in a motif group
homologous
IL_7A0S_033
IL_89002.2
IL_7M4W_0341/A/1001:1008,
1/A/1148:1149
SSU/LSU pseudoknot
Not in a motif group
geometric
IL_5J7L_278
IL_15861.7
IL_7M4W_0351/A/1008:1010,
1/A/1147:1148
Single bulged U
Not in a motif group
homologous
IL_5J7L_279
IL_83039.13
IL_7M4W_0361/A/1015:1021,
1/A/1137:1142
No text annotation
Not in a motif group
geometric
IL_7RQB_039
IL_57188.3
IL_7M4W_0371/A/1021:1027,
1/A/1121:1137
No text annotation
Not in a motif group
geometric
IL_5J7L_281
IL_50715.1
IL_7M4W_0381/A/1028:1031,
1/A/1118:1120
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_7A0S_038
IL_82068.2
IL_7M4W_0391/A/1035:1038,
1/A/1111:1114
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_283
IL_30621.2
IL_7M4W_0401/A/1040:1049,
1/A/1104:1109
No text annotation
Not in a motif group
IL_7M4W_0411/A/1191:1193,
1/A/1242:1245
Isolated cWS basepair
Not in a motif group
homologous
IL_4WF9_044
IL_52767.2
IL_7M4W_0421/A/1197:1201,
1/A/1235:1238
No text annotation
Not in a motif group
homologous
IL_5J7L_287
IL_91920.1
IL_7M4W_0431/A/1203:1210,
1/A/1229:1233
Kink-turn
Not in a motif group
homologous
IL_7RQB_047
IL_70923.2
IL_7M4W_0441/A/1257:1264,
1/A/2007:2013
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_289
IL_04346.7
IL_7M4W_0451/A/1305:1308,
1/A/1601:1602
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_5J7L_290
IL_50694.2
IL_7M4W_0461/A/1314:1318,
1/A/1326:1328
C-loop
Not in a motif group
homologous
IL_5J7L_291
IL_63596.6
IL_7M4W_0471/A/1346:1350,
1/A/1371:1375
UAA/GAN
Not in a motif group
homologous
IL_5J7L_292
IL_89002.2
IL_7M4W_0481/A/1352:1356,
1/A/1365:1369
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_293
IL_17136.1
IL_7M4W_0491/A/1410:1411,
1/A/1580:1585
No text annotation
Not in a motif group
homologous
IL_5J7L_294
IL_90348.1
IL_7M4W_0501/A/1412:1416,
1/A/1575:1579
UAA/GAN
Not in a motif group
homologous
IL_5J7L_295
IL_89002.2
IL_7M4W_0511/A/1427:1430,
1/A/1555:1559
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_296
IL_55178.1
IL_7M4W_0521/A/1432:1435,
1/A/1549:1553
tSH-tHW
Not in a motif group
homologous
IL_7RQB_057
IL_04059.1
IL_7M4W_0531/A/1445:1446,
1/A/1454:1456
Single bulged U
Not in a motif group
homologous
IL_5J7L_298
IL_83039.13
IL_7M4W_0541/A/1468:1473,
1/A/1509:1514
No text annotation
Not in a motif group
IL_7M4W_0551/A/1476:1478,
1/A/1501:1506
No text annotation
Not in a motif group
IL_7M4W_0561/A/1484:1486,
1/A/1494:1495
Single bulged A
Not in a motif group
homologous
IL_5J7L_302
IL_37497.2
IL_7M4W_0571/A/1522:1525,
1/A/1540:1544
No text annotation
Not in a motif group
IL_7M4W_0581/A/1649:1654,
1/A/2000:2002
No text annotation
Not in a motif group
homologous
IL_5J7L_304
IL_12566.2
IL_7M4W_0591/A/1661:1663,
1/A/1991:1993
Isolated tWW turn
Not in a motif group
homologous
IL_4WF9_063
IL_54997.7
IL_7M4W_0601/A/1664:1667,
1/A/1989:1990
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_7RQB_066
IL_50694.2
IL_7M4W_0611/A/1667:1672,
1/A/1986:1989
Intercalated tWH
Not in a motif group
geometric
IL_4WF9_065
IL_82842.2
IL_7M4W_0621/A/1684:1689,
1/A/1694:1700
tSH-tSH-tHH-tHS
Not in a motif group
homologous
IL_5J7L_308
IL_65969.2
IL_7M4W_0631/A/1716:1720,
1/A/1732:1736
Triple sheared
Not in a motif group
homologous
IL_5J7L_310
IL_56467.8
IL_7M4W_0641/A/1766:1767,
1/A/1976:1978
Single bulged A
Not in a motif group
homologous
IL_5J7L_312
IL_37497.2
IL_7M4W_0651/A/1794:1800,
1/A/1809:1817
Kink-turn related
Not in a motif group
homologous
IL_7A0S_065
IL_17069.3
IL_7M4W_0661/A/1833:1836,
1/A/1898:1899
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_5J7L_314
IL_88739.1
IL_7M4W_0671/A/1837:1838,
1/A/1894:1897
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_5J7L_315
IL_16396.2
IL_7M4W_0681/A/1842:1845,
1/A/1889:1890
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_5J7L_316
IL_09061.6
IL_7M4W_0691/A/1860:1863,
1/A/1870:1874
UAA/GAN related
Not in a motif group
homologous
IL_5J7L_317
IL_77691.1
IL_7M4W_0701/A/1929:1930,
1/A/1960:1963
Multiple bulged bases
Not in a motif group
geometric
IL_5J7L_318
IL_59677.2
IL_7M4W_0711/A/1930:1941,
1/A/1957:1960
No text annotation
Not in a motif group
homologous
IL_4WF9_077
IL_81589.2
IL_7M4W_0721/A/2045:2048,
1/A/2613:2615
Major groove platform with extra pair
Not in a motif group
geometric
IL_7RQB_093
IL_63450.2
IL_7M4W_0731/A/2050:2052,
1/A/2608:2611
No text annotation
Not in a motif group
homologous
IL_5J7L_321
IL_54678.5
IL_7M4W_0741/A/2060:2062,
1/A/2440:2442
No text annotation
Not in a motif group
geometric
IL_6IA2_005
IL_95997.1
IL_7M4W_0751/A/2062:2066,
1/A/2437:2440
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_1MFQ_004
IL_30621.2
IL_7M4W_0761/A/2066:2067,
1/A/2434:2437
Minor groove platform
Not in a motif group
geometric
IL_5TBW_094
IL_42622.2
IL_7M4W_0771/A/2077:2079,
1/A/2232:2235
Isolated tHS basepair with bulges
Not in a motif group
homologous
IL_7RQB_082
IL_38958.7
IL_7M4W_0781/A/2081:2083,
1/A/2228:2230
No text annotation
Not in a motif group
homologous
IL_5J7L_326
IL_95997.1
IL_7M4W_0791/A/2198:2200,
1/A/2216:2217
Single bulged U
Not in a motif group
homologous
IL_5J7L_331
IL_83039.13
IL_7M4W_0801/A/2293:2295,
1/A/2313:2317
No text annotation
Not in a motif group
IL_7M4W_0811/A/2346:2349,
1/A/2360:2363
Double sheared
Not in a motif group
homologous
IL_7RQB_089
IL_09705.9
IL_7M4W_0821/A/2397:2399,
1/A/2410:2411
Single bulged U
Not in a motif group
homologous
IL_5J7L_334
IL_83039.13
IL_7M4W_0831/A/2449:2450,
1/A/2494:2496
Single stack bend
Not in a motif group
geometric
IL_4WF9_089
IL_76488.2
IL_7M4W_0841/A/2450:2451,
1/A/2492:2494
Major groove platform
Not in a motif group
homologous
IL_7RQB_092
IL_27635.1
IL_7M4W_0851/A/2452:2455,
1/A/2489:2491
No text annotation
Not in a motif group
homologous
IL_5J7L_336
NA
IL_7M4W_0861/A/2455:2457,
1/A/2485:2489
Major groove minor groove platform with extra cWW
Not in a motif group
geometric
IL_4V9F_084
IL_92788.2
IL_7M4W_0871/A/2462:2466,
1/A/2476:2480
Triple sheared
Not in a motif group
homologous
IL_5J7L_338
IL_56467.8
IL_7M4W_0881/A/2503:2505,
1/A/2575:2578
No text annotation
Not in a motif group
homologous
IL_5J7L_339
NA
IL_7M4W_0891/A/2506:2508,
1/A/2570:2574
Isolated non-canonical cWW with bulges
Not in a motif group
geometric
IL_5J7L_340
IL_90933.2
IL_7M4W_0901/A/2508:2509,
1/A/2567:2570
No text annotation
Not in a motif group
homologous
IL_5J7L_341
IL_71530.2
IL_7M4W_0911/A/2518:2519,
1/A/2536:2539
Minor groove platform with intercalation
Not in a motif group
homologous
IL_5J7L_342
IL_95601.3
IL_7M4W_0921/A/2584:2586,
1/A/2600:2602
No text annotation
Not in a motif group
homologous
IL_7RQB_100
NA
IL_7M4W_0931/A/2587:2588,
1/A/2597:2599
Single bulged A
Not in a motif group
homologous
IL_7RQB_101
IL_37497.2
IL_7M4W_0941/A/2632:2636,
1/A/2770:2778
tSH-tHS-tHW
Not in a motif group
homologous
IL_4WF9_099
IL_04638.1
IL_7M4W_0951/A/2647:2654,
1/A/2659:2665
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
geometric
IL_7RQB_006
IL_04346.7
IL_7M4W_0961/A/2676:2680,
1/A/2721:2723
C-loop
Not in a motif group
homologous
IL_4WF9_101
IL_63596.6
IL_7M4W_0971/A/2683:2687,
1/A/2714:2718
No text annotation
Not in a motif group
homologous
IL_4WF9_102
IL_08296.3
IL_7M4W_0981/A/2691:2692,
1/A/2707:2710
Multiple bulged bases
Not in a motif group
homologous
IL_5J7L_349
IL_71530.2
IL_7M4W_0991/A/2733:2738,
1/A/2758:2763
UAA/GAN with extra cWW
Not in a motif group
homologous
IL_7RQB_107
IL_49767.5
IL_7M4W_1001/A/2791:2792,
1/A/2795:2797
Single bulged U
Not in a motif group
geometric
IL_5TBW_050
IL_83039.13
IL_7M4W_1011/A/2802:2807,
1/A/2885:2888
No text annotation
Not in a motif group
homologous
IL_5J7L_351
IL_49460.2
IL_7M4W_1021/A/2834:2835,
1/A/2874:2876
Major groove intercalation
Not in a motif group
homologous
IL_5J7L_352
IL_16396.2
IL_7M4W_1031/A/2839:2842,
1/A/2866:2870
Multiple bulged bases with non-canonical cWW
Not in a motif group
homologous
IL_5J7L_353
IL_58764.3
IL_7M4W_1041/A/2843:2848,
1/A/2861:2865
No text annotation
Not in a motif group
homologous
IL_5J7L_354
IL_83162.5
IL_7M4W_1051/B/15:17,
1/B/62:65
Isolated non-canonical cWW with bulges
Not in a motif group
geometric
IL_4V9F_097
IL_82068.2
IL_7M4W_1061/B/20:26,
1/B/54:59
No text annotation
Not in a motif group
IL_7M4W_1071/B/28:29,
1/B/49:52
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_5J7L_357
IL_09061.6
IL_7M4W_1081/B/32:36,
1/B/42:46
Symmetric double minor groove platform
Not in a motif group
geometric
IL_7RQB_114
IL_58103.6
IL_7M4W_1091/B/69:77,
1/B/94:102
Bacterial 5S Loop E
Not in a motif group
homologous
IL_7RQB_115
IL_56455.3
IL_7M4W_1101/a/32:34,
1/a/549:550
Single bulged G
Not in a motif group
homologous
IL_5J7L_001
IL_00225.2
IL_7M4W_1111/a/46:47,
1/a/392:394
Single bulged A
Not in a motif group
homologous
IL_5J7L_002
IL_37497.2
IL_7M4W_1121/a/49:54,
1/a/355:357
No text annotation
Not in a motif group
homologous
IL_5J7L_003
IL_11178.1
IL_7M4W_1131/a/56:58,
1/a/352:353
Minor groove platform
Not in a motif group
homologous
IL_4LFB_004
IL_93353.1
IL_7M4W_1141/a/65:68,
1/a/99:100
Multiple bulged bases
Not in a motif group
homologous
IL_5J7L_005
IL_76389.1
IL_7M4W_1151/a/69:71,
1/a/96:98
No text annotation
Not in a motif group
homologous
IL_6CZR_118
IL_95997.1
IL_7M4W_1161/a/73:77,
1/a/90:94
No text annotation
Not in a motif group
geometric
IL_5TBW_121
IL_05145.2
IL_7M4W_1171/a/124:127,
1/a/227:229
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_5J7L_009
IL_82068.2
IL_7M4W_1181/a/128:132,
1/a/223:226
Minor groove platform related
Not in a motif group
homologous
IL_5J7L_010
IL_58764.3
IL_7M4W_1191/a/140:142,
1/a/172:174
Isolated cWH basepair
Not in a motif group
homologous
IL_5J7L_011
IL_51629.2
IL_7M4W_1201/a/143:149,
1/a/164:171
tWH-tWH-tHW-tHW
Not in a motif group
homologous
IL_5J7L_012
IL_80604.2
IL_7M4W_1211/a/199:202,
1/a/209:210
Minor groove platform
Not in a motif group
geometric
IL_3MXH_005
IL_15052.1
IL_7M4W_1221/a/238:243,
1/a/273:280
Kink-turn with non-sequential stacking
Not in a motif group
homologous
IL_4LFB_011
IL_45067.2
IL_7M4W_1231/a/245:248,
1/a/270:271
No text annotation
Not in a motif group
homologous
IL_4LFB_012
IL_48100.2
IL_7M4W_1241/a/288:289,
1/a/300:304
C-loop
Not in a motif group
homologous
IL_5J7L_016
IL_37712.2
IL_7M4W_1251/a/363:365,
1/a/388:389
Single bulged U
Not in a motif group
geometric
IL_5J7L_017
IL_83039.13
IL_7M4W_1261/a/367:371,
1/a/385:386
C-loop
Not in a motif group
geometric
IL_5J7L_018
IL_75255.1
IL_7M4W_1271/a/371:372,
1/a/383:385
Single bulged G
Not in a motif group
homologous
IL_5J7L_019
IL_00225.2
IL_7M4W_1281/a/405:412,
1/a/423:429
No text annotation
Not in a motif group
homologous
IL_4LFB_017
IL_28026.1
IL_7M4W_1291/a/436:438,
1/a/489:494
No text annotation
Not in a motif group
homologous
IL_5J7L_021
IL_22248.1
IL_7M4W_1301/a/442:446,
1/a/480:485
tSH-tHW-tWW
Not in a motif group
homologous
IL_5J7L_022
IL_88269.3
IL_7M4W_1311/a/446:449,
1/a/476:480
No text annotation
Not in a motif group
IL_7M4W_1321/a/452:453,
1/a/471:473
Single stack bend
Not in a motif group
geometric
IL_5J7L_032
IL_76488.2
IL_7M4W_1331/a/501:508,
1/a/537:538
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_4LFB_020
IL_15861.7
IL_7M4W_1341/a/512:518,
1/a/525:533
No text annotation
Not in a motif group
geometric
IL_4V88_415
IL_55871.1
IL_7M4W_1351/a/566:572,
1/a/877:878
No text annotation
Not in a motif group
homologous
IL_4LFB_022
IL_69996.1
IL_7M4W_1361/a/577:581,
1/a/754:758
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_027
IL_17136.1
IL_7M4W_1371/a/591:593,
1/a/641:642
Major groove platform
Not in a motif group
homologous
IL_5J7L_028
IL_27635.1
IL_7M4W_1381/a/594:595,
1/a/637:640
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_5J7L_029
IL_09061.6
IL_7M4W_1391/a/602:609,
1/a/625:630
No text annotation
Not in a motif group
homologous
IL_5J7L_030
IL_78349.1
IL_7M4W_1401/a/651:652,
1/a/748:751
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_4LFB_027
IL_50694.2
IL_7M4W_1411/a/656:657,
1/a/742:744
Single stack bend
Not in a motif group
homologous
IL_5J7L_032
IL_76488.2
IL_7M4W_1421/a/659:663,
1/a/737:740
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_033
IL_71110.1
IL_7M4W_1431/a/670:675,
1/a/709:714
No text annotation
Not in a motif group
homologous
IL_4LFB_030
IL_04668.1
IL_7M4W_1441/a/681:685,
1/a/696:703
Kink-turn
Not in a motif group
homologous
IL_5J7L_035
IL_45067.2
IL_7M4W_1451/a/771:775,
1/a/801:802
Left turn
Not in a motif group
homologous
IL_5J7L_036
IL_29346.1
IL_7M4W_1461/a/776:780,
1/a/796:800
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_037
IL_17136.1
IL_7M4W_1471/a/884:891,
1/a/902:907
8x6 Sarcin-Ricin with inserted Y; G-bulge
Not in a motif group
homologous
IL_5J7L_038
IL_24606.2
IL_7M4W_1481/a/919:920,
1/a/1390:1392
Single bulged A
Not in a motif group
homologous
IL_6CZR_147
IL_37497.2
IL_7M4W_1491/a/922:924,
1/a/1387:1388
Single bulged G
Not in a motif group
homologous
IL_5J7L_040
IL_00225.2
IL_7M4W_1501/a/930:932,
1/a/1377:1381
Minor groove platform
Not in a motif group
homologous
IL_5J7L_041
IL_47078.1
IL_7M4W_1511/a/950:951,
1/a/1223:1225
No text annotation
Not in a motif group
homologous
IL_6CZR_150
NA
IL_7M4W_1521/a/990:994,
1/a/1041:1042
Minor groove platform
Not in a motif group
geometric
IL_4LFB_039
IL_47078.1
IL_7M4W_1531/a/995:996,
1/a/1038:1040
Single stack bend
Not in a motif group
homologous
IL_5J7L_044
IL_76488.2
IL_7M4W_1541/a/1003:1006,
1/a/1017:1020
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_6MWN_005
IL_30621.2
IL_7M4W_1551/a/1045:1047,
1/a/1205:1206
Single bulged U
Not in a motif group
geometric
IL_5J7L_046
IL_83039.13
IL_7M4W_1561/a/1047:1049,
1/a/1203:1205
No text annotation
Not in a motif group
homologous
IL_4LFB_043
NA
IL_7M4W_1571/a/1049:1053,
1/a/1201:1203
Isolated cWS basepair
Not in a motif group
geometric
IL_4LFB_044
IL_76319.2
IL_7M4W_1581/a/1054:1055,
1/a/1196:1200
Minor groove platform
Not in a motif group
homologous
IL_5J7L_048
IL_93353.1
IL_7M4W_1591/a/1057:1058,
1/a/1192:1194
Single bulged A
Not in a motif group
homologous
IL_5J7L_049
IL_37497.2
IL_7M4W_1601/a/1058:1060,
1/a/1190:1192
No text annotation
Not in a motif group
geometric
IL_5J7L_050
IL_95997.1
IL_7M4W_1611/a/1120:1125,
1/a/1141:1147
No text annotation
Not in a motif group
IL_7M4W_1621/a/1126:1129,
1/a/1139:1140
Minor groove platform
Not in a motif group
homologous
IL_5J7L_052
IL_15052.1
IL_7M4W_1631/a/1155:1158,
1/a/1172:1178
No text annotation
Not in a motif group
geometric
IL_5J7L_053
IL_42032.1
IL_7M4W_1641/a/1244:1250,
1/a/1281:1287
No text annotation
Not in a motif group
homologous
IL_4LFB_051
IL_09129.1
IL_7M4W_1651/a/1252:1255,
1/a/1274:1279
No text annotation
Not in a motif group
homologous
IL_5J7L_055
IL_75461.4
IL_7M4W_1661/a/1256:1259,
1/a/1270:1273
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_4V88_461
IL_30621.2
IL_7M4W_1671/a/1300:1305,
1/a/1326:1331
No text annotation
Not in a motif group
geometric
IL_4LFB_055
IL_19954.2
IL_7M4W_1681/a/1396:1398,
1/a/1498:1501
No text annotation
Not in a motif group
geometric
IL_5J7L_058
IL_36143.3
IL_7M4W_1691/a/1398:1401,
1/a/1494:1498
No text annotation
Not in a motif group
homologous
IL_5J7L_059
NA
IL_7M4W_1701/a/1402:1404,
1/a/1491:1493
No text annotation
Not in a motif group
geometric
IL_5MWI_007
IL_95997.1
IL_7M4W_1711/a/1404:1406,
1/a/1488:1491
Isolated non-canonical cWW with bulges
Not in a motif group
geometric
IL_4RUM_001
IL_82068.2
IL_7M4W_1721/a/1409:1411,
1/a/1483:1485
No text annotation
Not in a motif group
homologous
IL_5J7L_061
IL_95997.1
IL_7M4W_1731/a/1413:1416,
1/a/1478:1481
Double sheared
Not in a motif group
homologous
IL_6CZR_169
IL_09705.9
IL_7M4W_1741/a/1418:1420,
1/a/1474:1476
No text annotation
Not in a motif group
geometric
IL_4ZC7_001
IL_95997.1
IL_7M4W_1751/a/1427:1432,
1/a/1463:1467
Triple sheared related
Not in a motif group
homologous
IL_5J7L_063
IL_64879.2
IL_7M4W_1761/a/1437:1439,
1/a/1457:1458
Minor groove platform
Not in a motif group
homologous
IL_5J7L_064
IL_42622.2
IL_7M4W_1771/a/1442:1445,
1/a/1452:1454
No text annotation
Not in a motif group
homologous
IL_5J7L_065
IL_02284.5

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_7M4W_0011/A/37:38,
1/A/473:480,
1/A/508:509
No text annotation
Not in a motif group
homologous
J3_5J7L_036
NA
J3_7M4W_0021/A/63:64,
1/A/77:83,
1/A/117:121
No text annotation
Not in a motif group
homologous
J3_5J7L_037
NA
J3_7M4W_0031/A/681:687,
1/A/771:773,
1/A/789:792
No text annotation
Not in a motif group
homologous
J3_5J7L_038
NA
J3_7M4W_0041/A/696:698,
1/A/730:734,
1/A/758:761
No text annotation
Not in a motif group
homologous
J3_7RQB_005
NA
J3_7M4W_0051/A/1293:1298,
1/A/1623:1625,
1/A/1637:1640
No text annotation
Not in a motif group
homologous
J3_4WF9_004
NA
J3_7M4W_0061/A/1301:1304,
1/A/1603:1609,
1/A/1618:1620
No text annotation
Not in a motif group
homologous
J3_7RQB_008
NA
J3_7M4W_0071/A/1339:1344,
1/A/1377:1380,
1/A/1397:1398
No text annotation
Not in a motif group
homologous
J3_5J7L_043
NA
J3_7M4W_0081/A/2087:2089,
1/A/2192:2196,
1/A/2219:2224
No text annotation
Not in a motif group
homologous
J3_5J7L_044
NA
J3_7M4W_0091/A/2291:2293,
1/A/2317:2319,
1/A/2328:2333
No text annotation
Not in a motif group
homologous
J3_5J7L_045
NA
J3_7M4W_0101/A/2513:2516,
1/A/2541:2543,
1/A/2557:2563
No text annotation
Not in a motif group
homologous
J3_5J7L_046
NA
J3_7M4W_0111/A/2785:2787,
1/A/2801:2802,
1/A/2888:2890
No text annotation
Not in a motif group
J3_7M4W_0121/A/2810:2811,
1/A/2827:2832,
1/A/2878:2882
No text annotation
Not in a motif group
J3_7M4W_0131/B/8:14,
1/B/66:67,
1/B/104:107
No text annotation
Not in a motif group
J3_7M4W_0141/a/48:49,
1/a/357:363,
1/a/389:391
No text annotation
Not in a motif group
J3_7M4W_0151/a/583:585,
1/a/648:651,
1/a/751:752
No text annotation
Not in a motif group
J3_7M4W_0161/a/669:670,
1/a/714:722,
1/a/729:731
No text annotation
Not in a motif group
J3_7M4W_0171/a/823:826,
1/a/854:858,
1/a/865:871
No text annotation
Not in a motif group
homologous
J3_5J7L_004
NA
J3_7M4W_0181/a/940:943,
1/a/1232:1234,
1/a/1334:1337
No text annotation
Not in a motif group
J3_7M4W_0191/a/952:959,
1/a/970:981,
1/a/1218:1222
No text annotation
Not in a motif group
J3_7M4W_0201/a/987:990,
1/a/1042:1044,
1/a/1207:1212
No text annotation
Not in a motif group
homologous
J3_4LFB_005
NA
J3_7M4W_0211/a/999:1003,
1/a/1020:1024,
1/a/1031:1035
No text annotation
Not in a motif group
J3_7M4W_0221/a/1060:1065,
1/a/1104:1110,
1/a/1184:1190
No text annotation
Not in a motif group
J3_7M4W_0231/a/1070:1071,
1/a/1080:1084,
1/a/1095:1099
No text annotation
Not in a motif group
homologous
J3_6CZR_024
NA
J3_7M4W_0241/a/1113:1115,
1/a/1152:1155,
1/a/1178:1181
No text annotation
Not in a motif group
homologous
J3_5J7L_010
NA
J3_7M4W_0251/a/1234:1238,
1/a/1293:1300,
1/a/1331:1334
No text annotation
Not in a motif group
homologous
J3_4LFB_009
NA

Problematic loops

No problematic loops


Coloring options:
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