#Varna 2DMotifNtsSize
1
  • IL_97217.4
IL_97217.4
  • Basepair signature: cWW-cWW
  • History status: Exact match
  • Name: 1-3 bulged nucleotides, same chain
5235
2
  • IL_47174.5
IL_47174.5
  • Basepair signature: cWW-cWW-cWW
  • History status: Exact match
  • Name: cWW AG or water inserted cWW Y-Y.
6203
3
  • IL_39199.2
IL_39199.2
  • Basepair signature: cWW-tHS-cSH-cWW
  • History status: Exact match
  • Name: Hoogsteen-edge Platform, Single bulged base
555
4
  • IL_41766.2
IL_41766.2
  • Basepair signature: cWW-cWW-cWW-cWW
  • History status: Exact match
  • Name: Tandem cWW pairs (Not AU or GC)
849
5
  • IL_56465.2
IL_56465.2
  • Basepair signature: cWW-L-cWW
  • History status: Exact match
  • Name: Single, unpaired intercalated base, consensus A
545
6
  • IL_44540.2
IL_44540.2
  • Basepair signature: cWW-cSH-tHS-cWW
  • History status: Exact match
  • Name: Sugar-edge, 1-base platform, consensus tHS
543
7
  • IL_87904.3
IL_87904.3
  • Basepair signature: cWW-tSH-tHS-tHS-cWW
  • History status: Exact match
  • Name: Triple sheared (tSH-tHS-tHS) no inserted bases
1031
8
  • IL_06390.1
IL_06390.1
  • Basepair signature: cWW-cWH-cWW
  • History status: Exact match
  • Name: cWH basepair with syn base
625
9
  • IL_13959.2
IL_13959.2
  • Basepair signature: cWW-tSH-tHS-cWW
  • History status: Exact match
  • Name: Double Sheared (tSH-tHS)
824
10
  • IL_65553.4
IL_65553.4
  • Basepair signature: cWW-tSH-tWH-cWW-tSH-tHS-tSS-tSS-R-cWW
  • History status: Exact match
  • Name: Kink-turn
1322
11
  • IL_93424.2
IL_93424.2
  • Basepair signature: cWW-tSH-R-tHW-cWW
  • History status: Exact match
  • Name: tSH-inserted-tHW
922
12
  • IL_32390.2
IL_32390.2
  • Basepair signature: cWW-cWW
  • History status: Exact match
  • Name: 16S h19 IL and 23S H41 IL
521
13
  • IL_73276.1
IL_73276.1
  • Basepair signature: cWW-tWH-cSH-L-cWS-cWW
  • History status: Exact match
  • Name: C-loop
720
14
  • IL_55938.2
IL_55938.2
  • Basepair signature: cWW-cWW-cSH-cWW
  • History status: Exact match
  • Name: LSU Helix 89 (H89) IL2. cSH Platform.
719
15
  • IL_92027.2
IL_92027.2
  • Basepair signature: cWW-cSW-cWW
  • History status: Exact match
  • Name: 16S h21 S8 binding site
617
16
  • IL_85647.2
IL_85647.2
  • Basepair signature: cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
  • History status: Exact match
  • Name: Sarcin-ricin parent motif with 15 Nts
1516
17
  • IL_06429.2
IL_06429.2
  • Basepair signature: cWW-cWW
  • History status: Exact match
  • Name: cWW-bulge-cWW
516
18
  • IL_31555.3
IL_31555.3
  • Basepair signature: cWW-cWW-tSH-tHS-cWW
  • History status: Exact match
  • Name: Tandem sheared with inserted, unpaired purine.
915
19
  • IL_24982.3
IL_24982.3
  • Basepair signature: cWW-tSH-tHW-tHS-cWW
  • History status: Exact match
  • Name: SSU helix 20 (h20) IL. Prokaryal 5S Loop E Sub-motif
1015
20
  • IL_94430.3
IL_94430.3
  • Basepair signature: cWW-cWS-cWW
  • History status: Exact match
  • Name: 16S h32-h33-h34 3WJ
515
21
  • IL_49493.2
IL_49493.2
  • Basepair signature: cWW-tSH-tHH-cSH-tWH-tHS-cWW
  • History status: Exact match
  • Name: Sarcin-ricin Parent Motif - bacterial LSU H95 IL
1314
22
  • IL_40090.2
IL_40090.2
  • Basepair signature: cWW-cWS-cWW
  • History status: Exact match
  • Name: 16S h34 ILa : Part of larger motif
611
23
  • IL_27618.2
IL_27618.2
  • Basepair signature: cWW-cWW-cSH-cWW
  • History status: Exact match
  • Name: 23S H73 ILa : Part of larger Motif
711
24
  • IL_46648.1
IL_46648.1
  • Basepair signature: cWW-tHS-cWW
  • History status: Exact match
  • Name: 23S H91 IL | Single-Base Intercalation Site
511
25
  • IL_21304.1
IL_21304.1
  • Basepair signature: cWW-tHS-cWW
  • History status: Exact match
  • Name: Single sheared (tHS) with bulged bases. LSU Helix 75 (H75)
711
26
  • IL_24546.2
IL_24546.2
  • Basepair signature: cWW-L-L-L-cSH-L-cWW
  • History status: Exact match
  • Name: 23S H41 IL and 16S h18 IL : Has large bulge on one side
1010
27
  • IL_47444.3
IL_47444.3
  • Basepair signature: cWW-tSH-tWH-tHW-tHS-cWW-cWW
  • History status: Exact match
  • Name: SRP Loop E-like motif
129
28
  • IL_92114.3
IL_92114.3
  • Basepair signature: cWW-cSH-tHW-L-cWW
  • History status: Exact match
  • Name: GAAA loop receptor "platform" motif
99
29
  • IL_58291.2
IL_58291.2
  • Basepair signature: cWW-L-L-cWW
  • History status: Exact match
  • Name: Recurrent Sub-motif found in junctions
69
30
  • IL_92321.2
IL_92321.2
  • Basepair signature: cWW-cWW-tSH-tHS-tHS-cWW
  • History status: Exact match
  • Name: Triple sheared (tSH-tHS-tHS) with cWW Wobble base flanking motif
128
31
  • IL_90459.2
IL_90459.2
  • Basepair signature: cWW-cWW-cWW
  • History status: Exact match
  • Name: cWW AG or UU
68
32
  • IL_02809.1
IL_02809.1
  • Basepair signature: cWW-cWW-cWW-cWW
  • History status: Exact match
  • Name: REV element IL with syn G | Tandem cWW pairs (Not AU or GC)
88
33
  • IL_83451.2
IL_83451.2
  • Basepair signature: cWW-cWW-cSW-cWW-cSH-cWW
  • History status: Exact match
  • Name: cHS-cWS triple and Wobble. SSU Helix 44 (h44) IL1.
97
34
  • IL_73000.2
IL_73000.2
  • Basepair signature: cWW-cSW-cSH-cWW
  • History status: Exact match
  • Name: cHS-cWS
67
35
  • IL_86357.2
IL_86357.2
  • Basepair signature: cWW-tWW-cWW
  • History status: Exact match
  • Name: LSU Helix 61 IL2
67
36
  • IL_97057.2
IL_97057.2
  • Basepair signature: cWW-cWW-tWH-L-tHS-cWW
  • History status: Exact match
116
37
  • IL_70237.3
IL_70237.3
  • Basepair signature: cWW-L-L-cWS-tSW-R-R-cWW
  • History status: Exact match
106
38
  • IL_25230.2
IL_25230.2
  • Basepair signature: cWW-tSH-tHW-bif-L-R-bif-tWH-tHS-cWW
  • History status: Exact match
  • Name: Bacterial 5S rRNA Loop E
186
39
  • IL_10007.1
IL_10007.1
  • Basepair signature: cWW-tSH-L-cWW
  • History status: Exact match
  • Name: Single sheared with bulged bases
76
40
  • IL_53635.2
IL_53635.2
  • Basepair signature: cWW-R-tHW-tHW-tWW-cWW
  • History status: Exact match
  • Name: LSU Helix 32 (H32) IL
136
41
  • IL_44067.2
IL_44067.2
  • Basepair signature: cWW-L-R-tSH-tSH-tHS-cWW-cWW
  • History status: Exact match
  • Name: Quadruple sheared (tSH-tHS-tHS-tHS). LSU Helix 2 (H2).
146
42
  • IL_08926.1
IL_08926.1
  • Basepair signature: cWW-cHH-cWW
  • History status: Exact match
  • Name: 23S H91 IL
56
43
  • IL_13069.2
IL_13069.2
  • Basepair signature: cWW-cWW
  • History status: Exact match
  • Name: LSU 3WJ H32-H33-H35A
86
44
  • IL_24022.2
IL_24022.2
  • Basepair signature: cWW-tWH-cSH-tSH-tWH-tHS-cWW
  • History status: Exact match
106
45
  • IL_89088.1
IL_89088.1
  • Basepair signature: cWW-cWW
  • History status: Exact match
  • Name: 16S h19 IL and 23S H41 IL
56
46
  • IL_72158.2
IL_72158.2
  • Basepair signature: cWW-tSH-tSH-tHH-tHS-cWW
  • History status: Exact match
  • Name: LSU Helix 62 (H62) IL
136
47
  • IL_54420.1
IL_54420.1
  • Basepair signature: cWW-R-R-tHS-cWW
  • History status: Exact match
86
48
  • IL_79083.2
IL_79083.2
  • Basepair signature: cWW-tSH-L-R-L-tHH-cWW
  • History status: Exact match
115
49
  • IL_82188.1
IL_82188.1
  • Basepair signature: cWW-tSH-L-R-R-R-R-L-L-L-cWW
  • History status: Exact match
  • Name: LSU H68 IL from H.m.
145
50
  • IL_90133.1
IL_90133.1
  • Basepair signature: cWW-bif-tSH-cWW
  • History status: Exact match
75
51
  • IL_71288.1
IL_71288.1
  • Basepair signature: cWW-cSW-R-cWW
  • History status: Exact match
  • Name: Leadzyme Motif. LSU H101 IL2. SSU Decoding site.
95
52
  • IL_77263.1
IL_77263.1
  • Basepair signature: cWW-tSH-tHS-tSS-R-cWW
  • History status: Exact match
  • Name: Kink-turn from U4
115
53
  • IL_45262.2
IL_45262.2
  • Basepair signature: cWW-L-L-L-tHS-cWW
  • History status: Exact match
95
54
  • IL_01239.1
IL_01239.1
  • Basepair signature: cWW-L-R-R-cWW
  • History status: Exact match
75
55
  • IL_02359.2
IL_02359.2
  • Basepair signature: cWW-tSS-tHH-cSW-bif-tSH-tWH-R-R-tHS-cWW
  • History status: Exact match
165
56
  • IL_92484.1
IL_92484.1
  • Basepair signature: cWW-cSH-R-R-cWW
  • History status: Exact match
85
57
  • IL_78732.3
IL_78732.3
  • Basepair signature: cWW-cWH-tWS-cWW
  • History status: Exact match
  • Name: Double S-turn motif
95
58
  • IL_98591.2
IL_98591.2
  • Basepair signature: cWW-cSS-tSS-tHH-tWW-tHH-tHS-cWW
  • History status: Exact match
164
59
  • IL_39526.3
IL_39526.3
  • Basepair signature: cWW-L-L-L-cWW
  • History status: Exact match
84
60
  • IL_28572.1
IL_28572.1
  • Basepair signature: cWW-tWH-cSW-L-R-R-L-tHS-cWW
  • History status: Exact match
  • Name: 16S h18 kink-turn like motif
164
61
  • IL_93568.1
IL_93568.1
  • Basepair signature: cWW-tSH-tHS-L-R-R-L-cWW
  • History status: Exact match
  • Name: Triple Sheared (tSH-tHS-tHS) with wobble cWW.
124
62
  • IL_98556.3
IL_98556.3
  • Basepair signature: cWW-L-R-L-cWW
  • History status: Exact match
84
63
  • IL_10005.1
IL_10005.1
  • Basepair signature: cWW-L-cWW
  • History status: Exact match
54
64
  • IL_40387.4
IL_40387.4
  • Basepair signature: cWW-cWW-cSH-R-cWW
  • History status: Exact match
  • Name: LSU Helix 89 (H89) IL2
84
65
  • IL_62661.2
IL_62661.2
  • Basepair signature: cWW-tSH-L-R-tHS-cWW
  • History status: Exact match
  • Name: Double-sheared with two unpaired, stacked As. LSU Helix 68 IL4.
104
66
  • IL_31066.2
IL_31066.2
  • Basepair signature: cWW-R-cWW
  • History status: Exact match
  • Name: SSU Helix 44 (h44) extension
74
67
  • IL_22732.1
IL_22732.1
  • Basepair signature: cWW-tSH-tWH-tHS-cWW
  • History status: Exact match
  • Name: tSH-inserted-tHS
94
68
  • IL_21333.1
IL_21333.1
  • Basepair signature: cWW-tWH-tHS-cWW
  • History status: Exact match
  • Name: tSH-tHW-bulge
94
69
  • IL_38807.2
IL_38807.2
  • Basepair signature: cWW-tWH-L-tHW-cSH-cWW
  • History status: Exact match
124
70
  • IL_47758.1
IL_47758.1
  • Basepair signature: cWW-cHW-cWW-cWW
  • History status: Exact match
  • Name: REV element IL with syn G | Tandem cWW pairs (Not AU or GC)
84
71
  • IL_34363.1
IL_34363.1
  • Basepair signature: cWW-cSS-tSS-L-tSH-tSS-L-R-R-L-cWW
  • History status: Exact match
  • Name: Kink-turn from 23S H42
143
72
  • IL_58586.2
IL_58586.2
  • Basepair signature: cWW-R-R-cWW
  • History status: Exact match
63
73
  • IL_91547.1
IL_91547.1
  • Basepair signature: cWW-L-R-tHS-cWW
  • History status: Exact match
  • Name: tHS tHH bulge with S-turn
93
74
  • IL_34156.4
IL_34156.4
  • Basepair signature: cWW-L-R-cWW
  • History status: Exact match
  • Name: cWW AG or UU
63
75
  • IL_89028.3
IL_89028.3
  • Basepair signature: cWW-L-R-L-L-L-L-L-L-L-cWW
  • History status: Exact match
  • Name: Part of Helix 71 (H71) junction in 23S rRNA E.c. H.m. and Tetrahymena
163
76
  • IL_43946.1
IL_43946.1
  • Basepair signature: cWW-tSH-tSS-tSS-R-R-R-R-cWW
  • History status: Exact match
123
77
  • IL_30840.1
IL_30840.1
  • Basepair signature: cWW-cWW-L-cWW-cWW-cWW
  • History status: Exact match
113
78
  • IL_23262.3
IL_23262.3
  • Basepair signature: cWW-R-R-R-tSW-L-L-cWW
  • History status: Exact match
113
79
  • IL_62499.4
IL_62499.4
  • Basepair signature: cWW-R-cWW
  • History status: Exact match
63
80
  • IL_52173.1
IL_52173.1
  • Basepair signature: cWW-L-R-R-R-L-cWW
  • History status: Exact match
93
81
  • IL_36254.1
IL_36254.1
  • Basepair signature: cWW-L-cSH-cWW
  • History status: Exact match
63
82
  • IL_79955.2
IL_79955.2
  • Basepair signature: cWW-cWW-cWW-cWW-cSW-cWW
  • History status: Exact match
  • Name: SSU Helix (23) h23 IL1
123
83
  • IL_80494.2
IL_80494.2
  • Basepair signature: cWW-tWH-L-R-tHS-bif-cWW
  • History status: Exact match
  • Name: LSU H58 IL2 H.m.
123
84
  • IL_98421.2
IL_98421.2
  • Basepair signature: cWW-L-L-L-cWW
  • History status: Exact match
  • Name: SSU Helix 12 (h12) IL
73
85
  • IL_37053.1
IL_37053.1
  • Basepair signature: cWW-tSH-tSH-tHS-tSS-L-R-cWW
  • History status: Exact match
  • Name: Kink-turn from 23S H58
133
86
  • IL_34628.2
IL_34628.2
  • Basepair signature: cWW-tSS-L-tSH-tHS-cWW-cWW
  • History status: Exact match
  • Name: Kink-turn
133
87
  • IL_95652.2
IL_95652.2
  • Basepair signature: cWW-tSH-tHH-cSH-tWH-tHS-L-cWW
  • History status: Exact match
  • Name: SSU Helix 27 (h27) IL Sarcin-Ricin motif
143
88
  • IL_16166.2
IL_16166.2
  • Basepair signature: cWW-R-cWW
  • History status: Exact match
53
89
  • IL_75447.1
IL_75447.1
  • Basepair signature: cWW-cWW-cWW
  • History status: Exact match
73
90
  • IL_16252.2
IL_16252.2
  • Basepair signature: cWW-R-cWW
  • History status: Exact match
  • Name: 23S H91 IL
53
91
  • IL_53774.1
IL_53774.1
  • Basepair signature: cWW-R-R-tHS-cWW
  • History status: Exact match
  • Name: Single sheared with bulged bases
83
92
  • IL_95150.3
IL_95150.3
  • Basepair signature: cWW-cHW-tHS-cWW
  • History status: Exact match
83
93
  • IL_71565.1
IL_71565.1
  • Basepair signature: cWW-cWW
  • History status: Exact match
53
94
  • IL_82563.1
IL_82563.1
  • Basepair signature: cWW-R-tWH-R-R-R-cWW
  • History status: Exact match
  • Name: Thi-box riboswitch T-loop
103
95
  • IL_09348.3
IL_09348.3
  • Basepair signature: cWW-L-cWW-cWW
  • History status: Exact match
  • Name: cWW-L-cWW-cWW
73
96
  • IL_97833.1
IL_97833.1
  • Basepair signature: cWW-cSW-tSH-tWH-tHW-tHS-cWW-cWW
  • History status: Exact match
142
97
  • IL_37406.1
IL_37406.1
  • Basepair signature: cWW-R-R-R-cWW
  • History status: Exact match
82
98
  • IL_25174.1
IL_25174.1
  • Basepair signature: cWW-R-cWW-cWW
  • History status: Exact match
72
99
  • IL_12211.1
IL_12211.1
  • Basepair signature: cWW-L-R-R-R-L-L-cWW-cWW
  • History status: Exact match
132
100
  • IL_07300.1
IL_07300.1
  • Basepair signature: cWW-cSH-L-cWW-cWW
  • History status: Exact match
92
101
  • IL_76095.3
IL_76095.3
  • Basepair signature: cWW-cWW-tSH-R-tHW-tHW-tWH-L-cWW-cWW
  • History status: Exact match
  • Name: Motif from Hairpin Ribozyme
202
102
  • IL_98566.1
IL_98566.1
  • Basepair signature: cWW-L-R-R-R-cWW
  • History status: Exact match
82
103
  • IL_94744.1
IL_94744.1
  • Basepair signature: cWW-cWW-L-R-tSH-tHH-cSH-tWH-tHS-cWW
  • History status: Exact match
  • Name: Sarcin-ricin motif with extra cWW GA pair
172
104
  • IL_58811.1
IL_58811.1
  • Basepair signature: cWW-L-R-R-L-L-cWW
  • History status: Exact match
102
105
  • IL_54965.1
IL_54965.1
  • Basepair signature: cWW-cWW-L-R-L-cWW
  • History status: Exact match
  • Name: Leadzyme Motif. SSU Decoding site motif, extended.
92
106
  • IL_55287.1
IL_55287.1
  • Basepair signature: cWW-L-R-R-L-L-L-cWW
  • History status: Exact match
112
107
  • IL_65137.1
IL_65137.1
  • Basepair signature: cWW-L-cSS-tWH-tHW-L-cWW-cWW
  • History status: Exact match
  • Name: Kink-turn like motif in Group I Intron
132
108
  • IL_91132.1
IL_91132.1
  • Basepair signature: cWW-L-R-L-cWW
  • History status: Exact match
72
109
  • IL_21495.1
IL_21495.1
  • Basepair signature: cWW-L-R-R-R-tHW-tHW-bif-cWW
  • History status: Exact match
152
110
  • IL_82831.2
IL_82831.2
  • Basepair signature: cWW-tSH-L-R-R-R-R-R-L-cWW
  • History status: Exact match
  • Name: Kink-turn from 16S H23
132
111
  • IL_81441.1
IL_81441.1
  • Basepair signature: cWW-R-cWW
  • History status: Exact match
62
112
  • IL_52940.1
IL_52940.1
  • Basepair signature: cWW-L-R-R-R-R-L-L-L-tWW-cWW
  • History status: Exact match
142
113
  • IL_23414.1
IL_23414.1
  • Basepair signature: cWW-L-R-R-R-cSH-R-bif-tWH-R-R-R-R-R-L-cWW
  • History status: Exact match
212
114
  • IL_37197.1
IL_37197.1
  • Basepair signature: cWW-L-L-L-tHS-cWW-cWW
  • History status: Exact match
112
115
  • IL_89231.1
IL_89231.1
  • Basepair signature: cWW-L-L-L-tWH-L-L-L-cWW
  • History status: Exact match
  • Name: LSU H77
132
116
  • IL_80093.1
IL_80093.1
  • Basepair signature: cWW-L-R-tHH-tHS-cWW
  • History status: Exact match
112
117
  • IL_45794.1
IL_45794.1
  • Basepair signature: cWW-L-R-R-tWW-tWW-cWW
  • History status: Exact match
142
118
  • IL_77076.1
IL_77076.1
  • Basepair signature: cWW-tSH-tSS-tSS-tWH-tWH-R-R-R-R-R-R-cWW
  • History status: Exact match
182
119
  • IL_78744.1
IL_78744.1
  • Basepair signature: cWW-tSH-tSH-tHS-tHS-cWW
  • History status: Exact match
  • Name: Quadruple Sheared (tSH-tSH-tHS-tHS)
122
120
  • IL_69901.1
IL_69901.1
  • Basepair signature: cWW-R-cWW
  • History status: Exact match
52
121
  • IL_16377.1
IL_16377.1
  • Basepair signature: cWW-tSH-cWW
  • History status: Exact match
62
122
  • IL_96446.1
IL_96446.1
  • Basepair signature: cWW-R-R-tWH-L-R-cWW
  • History status: Exact match
112
123
  • IL_16415.1
IL_16415.1
  • Basepair signature: cWW-L-R-tSH-L-R-tHS-R-R-cWW
  • History status: Exact match
  • Name: SSU Helix 23 (h23) Kink-turn T. thermophilus
152
124
  • IL_90057.1
IL_90057.1
  • Basepair signature: cWW-tSS-L-L-cSS-tWH-tSW-cWS-cSS-tWS-cSH-cWH-cHW-cSH-R-R-cWW
  • History status: Exact match
252
125
  • IL_25271.1
IL_25271.1
  • Basepair signature: cWW-cWW-tWH-tWH-tHW-tHW-cWW
  • History status: Exact match
  • Name: SSU Helix 8 (h8) IL E.c. and Yeast
152
126
  • IL_15840.2
IL_15840.2
  • Basepair signature: cWW-tSH-tSH-L-R-L-cWW
  • History status: Exact match
  • Name: Triple Sheared with unpaired, inserted A
112
127
  • IL_70280.1
IL_70280.1
  • Basepair signature: cWW-cWW-L-R-R-L-cWW
  • History status: Exact match
  • Name: Double sheared with wobble cWW.
102
128
  • IL_40892.1
IL_40892.1
  • Basepair signature: cWW-L-L-L-L-cWW
  • History status: Exact match
112
129
  • IL_00998.1
IL_00998.1
  • Basepair signature: cWW-R-R-tHS-cWW
  • History status: Exact match
82
130
  • IL_11751.1
IL_11751.1
  • Basepair signature: cWW-L-L-L-cWW
  • History status: Exact match
72
131
  • IL_74876.1
IL_74876.1
  • Basepair signature: cWW-tWH-L-R-tHS-cWW
  • History status: Exact match
112
132
  • IL_31707.1
IL_31707.1
  • Basepair signature: cWW-L-L-L-cWW-L-bif-cWW
  • History status: Exact match
  • Name: Vitamin B12 aptamer
112
133
  • IL_57785.5
IL_57785.5
  • Basepair signature: cWW-cSW-tHS-cWW
  • History status: Exact match
  • Name: SSU Decoding Site -- Human. Bulge-cSW-tHS
92
134
  • IL_87336.1
IL_87336.1
  • Basepair signature: cWW-L-R-L-L-cWW
  • History status: Exact match
  • Name: LSU Eukaryal Helix 96 (H96) IL1
92
135
  • IL_50521.1
IL_50521.1
  • Basepair signature: cWW-tSH-cWH-tWH-tSS-tHW-L-cWW
  • History status: Exact match
152
136
  • IL_09882.1
IL_09882.1
  • Basepair signature: cWW-tSH-tHW-tWH-tHS-cWW
  • History status: Exact match
122
137
  • IL_46435.1
IL_46435.1
  • Basepair signature: cWW-L-L-L-L-L-L-L-L-L-cWW
  • History status: Exact match
132
138
  • IL_41397.2
IL_41397.2
  • Basepair signature: cWW-L-R-R-R-cWW
  • History status: Exact match
  • Name: LSU Helix 96 (H96) IL2
102
139
  • IL_16330.1
IL_16330.1
  • Basepair signature: cWW-cWW-L-R-R-R-R-R-R-R-R-R-L-L-L-L-L-tHH-tHS-cWW
  • History status: Exact match
282
140
  • IL_87548.1
IL_87548.1
  • Basepair signature: cWW-tSH-tHW-L-cSH-R-cWW
  • History status: Exact match
112
141
  • IL_01054.1
IL_01054.1
  • Basepair signature: cWW-L-R-R-R-cWW
  • History status: Exact match
82
142
  • IL_33965.1
IL_33965.1
  • Basepair signature: cWW-L-R-R-L-cWW
  • History status: Exact match
  • Name: tHS tHH bulge with S-turn
92
143
  • IL_28942.1
IL_28942.1
  • Basepair signature: cWW-L-tWH-R-R-R-cWW
  • History status: Exact match
92
144
  • IL_82650.1
IL_82650.1
  • Basepair signature: cWW-cWS-tSH-tHS-L-R-L-cWW
  • History status: Exact match
131
145
  • IL_97842.1
IL_97842.1
  • Basepair signature: cWW-R-R-R-R-cWS-cWW-cWW-L-R-cWW
  • History status: Exact match
161
146
  • IL_15205.1
IL_15205.1
  • Basepair signature: cWW-cWW-L-cSW-L-tHS-cWW
  • History status: Exact match
131
147
  • IL_11302.1
IL_11302.1
  • Basepair signature: cWW-L-R-R-tHW-L-cWW
  • History status: Exact match
101
148
  • IL_75328.1
IL_75328.1
  • Basepair signature: cWW-L-R-R-R-L-L-cSS-tSS-cWW
  • History status: Exact match
141
149
  • IL_26971.1
IL_26971.1
  • Basepair signature: cWW-tSH-L-R-R-R-L-cWW
  • History status: Exact match
111
150
  • IL_60649.1
IL_60649.1
  • Basepair signature: cWW-cSS-L-L-L-tSS-tHW-L-R-cWW
  • History status: Exact match
  • Name: Kink-turn
131
151
  • IL_39324.1
IL_39324.1
  • Basepair signature: cWW-tSS-tHH-cSW-bif-tSH-tWH-R-R-tHS-cWW-cWW
  • History status: Exact match
201
152
  • IL_02690.1
IL_02690.1
  • Basepair signature: cWW-tSS-L-cSS-R-L-L-L-L-cWW
  • History status: Exact match
131
153
  • IL_25307.1
IL_25307.1
  • Basepair signature: cWW-tHH-L-R-L-cWW
  • History status: Exact match
91
154
  • IL_55649.1
IL_55649.1
  • Basepair signature: cWW-tWH-L-R-cWW
  • History status: Exact match
91
155
  • IL_37347.1
IL_37347.1
  • Basepair signature: cWW-cHW-L-tHW-tHW-tHW-bif-cWW
  • History status: Exact match
161
156
  • IL_85805.1
IL_85805.1
  • Basepair signature: cWW-L-R-R-R-cWW
  • History status: Exact match
91
157
  • IL_66744.1
IL_66744.1
  • Basepair signature: cWW-L-R-R-L-L-L-L-cWW-cWW
  • History status: Exact match
  • Name: SSU Helix 21 (h21) IL2 E.coli
141
158
  • IL_20775.1
IL_20775.1
  • Basepair signature: cWW-R-tHS-cWW
  • History status: Exact match
  • Name: tSH-inserted
81
159
  • IL_59529.1
IL_59529.1
  • Basepair signature: cWW-tWH-tHH-tHS-cWW
  • History status: Exact match
111
160
  • IL_77296.1
IL_77296.1
  • Basepair signature: cWW-R-R-R-R-R-R-R-R-R-R-cWW
  • History status: Exact match
151
161
  • IL_12486.1
IL_12486.1
  • Basepair signature: cWW-cWW-L-R-R-R-L-L-cWW-cWW
  • History status: Exact match
141
162
  • IL_06306.1
IL_06306.1
  • Basepair signature: cWW-L-R-R-R-R-R-R-R-L-cWW
  • History status: Exact match
141
163
  • IL_90880.1
IL_90880.1
  • Basepair signature: cWW-tWW-L-tWH-R-R-R-R-R-R-R-tHH-tHS-cWW
  • History status: Exact match
231
164
  • IL_92280.1
IL_92280.1
  • Basepair signature: cWW-tSH-L-R-R-L-L-L-cWW
  • History status: Exact match
121
165
  • IL_91379.1
IL_91379.1
  • Basepair signature: cWW-L-R-R-R-R-R-R-L-cWW
  • History status: Exact match
121
166
  • IL_37150.1
IL_37150.1
  • Basepair signature: cWW-tHH-tHS-cWW
  • History status: Exact match
  • Name: tHS tHH bulge with S-turn
91
167
  • IL_27243.1
IL_27243.1
  • Basepair signature: cWW-cSS-cWH-tSS-cWH-R-tWH-R-cWW
  • History status: Exact match
151
168
  • IL_05221.1
IL_05221.1
  • Basepair signature: cWW-cWW-bif-tHW-cWH-tSW-cSH-cWH-cSH-tHS-cWW
  • History status: Exact match
171
169
  • IL_85510.1
IL_85510.1
  • Basepair signature: cWW-L-L-cWW
  • History status: Exact match
111
170
  • IL_83250.1
IL_83250.1
  • Basepair signature: cWW-tWH-R-R-R-cSH-cWW-cWW
  • History status: Exact match
  • Name: 16S h40 3WJ T.th.
111
171
  • IL_06808.1
IL_06808.1
  • Basepair signature: cWW-tSH-tHS-cWW
  • History status: Exact match
  • Name: Double sheared (tSH-tSH) one bulged base.
91
172
  • IL_13682.1
IL_13682.1
  • Basepair signature: cWW-cSH-tHW-cWW
  • History status: Exact match
91
173
  • IL_25181.1
IL_25181.1
  • Basepair signature: cWW-cWW-L-R-R-tHW-bif-cWW
  • History status: Exact match
131
174
  • IL_03282.1
IL_03282.1
  • Basepair signature: cWW-tHW-tHS-cWW-cWW
  • History status: Exact match
101
175
  • IL_09333.1
IL_09333.1
  • Basepair signature: cWW-tWH-tWH-tHW-tHW-cWW
  • History status: Exact match
  • Name: SSU Helix 8 (h8) IL T. thermophilus
131
176
  • IL_31006.1
IL_31006.1
  • Basepair signature: cWW-tSH-tHW-L-bif-cWW
  • History status: Exact match
  • Name: tSH-tHW-L-bif-cWW
121
177
  • IL_54450.1
IL_54450.1
  • Basepair signature: cWW-L-R-cWW-cWW
  • History status: Exact match
81
178
  • IL_83856.1
IL_83856.1
  • Basepair signature: cWW-cWW-tWW-tHS-cWW-cWW
  • History status: Exact match
121
179
  • IL_17603.1
IL_17603.1
  • Basepair signature: cWW-tSH-R-tHH-tHS-cWW
  • History status: Exact match
121
180
  • IL_02835.1
IL_02835.1
  • Basepair signature: cWW-L-L-L-L-L-tHH-tHS-cWW
  • History status: Exact match
131
181
  • IL_96031.1
IL_96031.1
  • Basepair signature: cWW-cWW-cWW-cWW
  • History status: Exact match
  • Name: tHS tHH bulge with S-turn
81
182
  • IL_61730.1
IL_61730.1
  • Basepair signature: cWW-L-R-L-tHW-L-L-cWW
  • History status: Exact match
111
183
  • IL_53323.1
IL_53323.1
  • Basepair signature: cWW-L-R-R-L-cWW-cWW
  • History status: Exact match
101
184
  • IL_88367.1
IL_88367.1
  • Basepair signature: cWW-bif-R-cSH-tWH-tHS-L-R-tSH-cWW
  • History status: Exact match
151
185
  • IL_57977.1
IL_57977.1
  • Basepair signature: cWW-tSH-L-R-L-tHS-cWW
  • History status: Exact match
111
186
  • IL_86059.1
IL_86059.1
  • Basepair signature: cWW-cWW
  • History status: Exact match
71
187
  • IL_88403.1
IL_88403.1
  • Basepair signature: cWW-cSH-L-cSW-cWW-R-R-cWW
  • History status: Exact match
111
188
  • IL_94973.1
IL_94973.1
  • Basepair signature: cWW-L-R-L-tHH-cSH-tWH-tHS-cWW
  • History status: Exact match
  • Name: Sarcin-Ricin from Group II Intron with inserted base and poor modeling:
141
189
  • IL_21254.1
IL_21254.1
  • Basepair signature: cWW-tWH-cWW-tHS-tSS-R-R-cWW
  • History status: Exact match
  • Name: SSU Helix 11 (h11) IL Kink-turn T. thermophilus
141
190
  • IL_76263.1
IL_76263.1
  • Basepair signature: cWW-tHW-L-R-R-R-L-L-L-L-L-L-L-cWW
  • History status: Exact match
191
191
  • IL_22579.1
IL_22579.1
  • Basepair signature: cWW-L-R-R-R-R-L-cWW
  • History status: Exact match
101
192
  • IL_81398.1
IL_81398.1
  • Basepair signature: cWW-L-R-cWW-cWW-cWW
  • History status: Exact match
101
193
  • IL_41864.1
IL_41864.1
  • Basepair signature: cWW-L-R-cHW-L-L-cSH-L-cWW
  • History status: Exact match
  • Name: Part of H71 junction in 23S rRNA from T.th.
161
194
  • IL_98688.1
IL_98688.1
  • Basepair signature: cWW-L-tSS-cWW
  • History status: Exact match
91
195
  • IL_05462.1
IL_05462.1
  • Basepair signature: cWW-R-cWW
  • History status: Exact match
71
196
  • IL_78809.1
IL_78809.1
  • Basepair signature: cWW-bif-R-cWW
  • History status: Exact match
61
197
  • IL_98924.1
IL_98924.1
  • Basepair signature: cWW-L-L-L-cWW-cWW
  • History status: Exact match
101
198
  • IL_40527.1
IL_40527.1
  • Basepair signature: cWW-L-R-tSS-L-tSH-L-R-L-cWW-cWW
  • History status: Exact match
  • Name: Kink-turn
161
199
  • IL_06468.1
IL_06468.1
  • Basepair signature: cWW-tWH-R-R-R-cWW-cWW
  • History status: Exact match
  • Name: 16S h40 3WJ E.c.
111
200
  • IL_97073.1
IL_97073.1
  • Basepair signature: cWW-R-R-R-tHS-cWW
  • History status: Exact match
91
201
  • IL_75415.1
IL_75415.1
  • Basepair signature: cWW-L-L-L-L-L-L-cWW
  • History status: Exact match
  • Name: Pseudo-knot forming internal loop
101
202
  • IL_57285.1
IL_57285.1
  • Basepair signature: cWW-L-L-tWW-L-L-L-cWS-cWW
  • History status: Exact match
131
203
  • IL_89794.1
IL_89794.1
  • Basepair signature: cWW-tSH-tSH-tSS-tSS-R-cWW
  • History status: Exact match
141
204
  • IL_55934.1
IL_55934.1
  • Basepair signature: cWW-L-L-tSH-L-R-bif-L-cWW-cWW
  • History status: Exact match
  • Name: kink-turn-like
161
205
  • IL_82113.1
IL_82113.1
  • Basepair signature: cWW-cWW-L-R-R-R-R-L-L-L-L-L-cWW
  • History status: Exact match
171
206
  • IL_56513.1
IL_56513.1
  • Basepair signature: cWW-L-cWW
  • History status: Exact match
91
207
  • IL_83920.1
IL_83920.1
  • Basepair signature: cWW-cWW-L-cWW
  • History status: Exact match
71
208
  • IL_54576.1
IL_54576.1
  • Basepair signature: cWW-bif-L-cWW
  • History status: Exact match
81
209
  • IL_71685.1
IL_71685.1
  • Basepair signature: cWW-cWW-bif-R-cSH-tWH-tHS-cWW
  • History status: Exact match
  • Name: Sarcin-like with an intercalated basepair
141
210
  • IL_41139.1
IL_41139.1
  • Basepair signature: cWW-L-R-L-cWW
  • History status: Exact match
81
211
  • IL_47687.1
IL_47687.1
  • Basepair signature: cWW-tWH-tWH-tWH-L-R-L-tWW-cWW
  • History status: Exact match
141
212
  • IL_98655.1
IL_98655.1
  • Basepair signature: cWW-L-cHW-L-L-tHH-tSW-L-cWW
  • History status: Exact match
  • Name: Part of H71 Junction in 26S rRNA from Yeast
161
213
  • IL_68827.1
IL_68827.1
  • Basepair signature: cWW-tSH-tHH-R-R-R-cWW
  • History status: Exact match
  • Name: Reverse Kink-Turn
111
214
  • IL_53988.1
IL_53988.1
  • Basepair signature: cWW-cSW-L-L-tHS-cWS-cWW
  • History status: Exact match
131
215
  • IL_25082.1
IL_25082.1
  • Basepair signature: cWW-L-R-R-L-L-tSH-tSS-cWW-cWW-cWW
  • History status: Exact match
181
216
  • IL_21421.1
IL_21421.1
  • Basepair signature: cWW-L-R-tSH-tSS-tSS-tWH-tSH-R-R-R-R-R-R-cWW
  • History status: Exact match
201
217
  • IL_80652.1
IL_80652.1
  • Basepair signature: cWW-R-cSH-tWH-tSH-tHS-cWW
  • History status: Exact match
141
218
  • IL_23639.1
IL_23639.1
  • Basepair signature: cWW-tWH-tHS-L-cWW
  • History status: Exact match
  • Name: tWH-tHS-L-cWW
101
219
  • IL_91089.1
IL_91089.1
  • Basepair signature: cWW-L-L-L-L-cWW
  • History status: Exact match
81
220
  • IL_03741.1
IL_03741.1
  • Basepair signature: cWW-cWW-L-R-R-R-R-R-L-tHS-cWW
  • History status: Exact match
151
221
  • IL_27668.1
IL_27668.1
  • Basepair signature: cWW-L-L-L-L-L-tHS-cWW
  • History status: Exact match
121
222
  • IL_97191.1
IL_97191.1
  • Basepair signature: cWW-cWW-tHH-cSH-tWH-tHS-cWW
  • History status: Exact match
  • Name: Sarcin-ricin motif with cWW UU instead of tSH basepair.
131
223
  • IL_75688.1
IL_75688.1
  • Basepair signature: cWW-L-R-R-L-L-L-cSH-L-L-cWW
  • History status: Exact match
  • Name: Part of Helix 71 (H71) junction in 23S of D.r.
161
224
  • IL_77195.1
IL_77195.1
  • Basepair signature: cWW-cSH-R-cWW
  • History status: Exact match
81
225
  • IL_58454.1
IL_58454.1
  • Basepair signature: cWW-tSH-L-R-R-cWW
  • History status: Exact match
101
226
  • IL_31754.1
IL_31754.1
  • Basepair signature: cWW-cSW-tHW-cSH-tWH-tHS-cWW
  • History status: Exact match
  • Name: Sarcin-ricin H95 23S rRNA E.c.
131
227
  • IL_37990.1
IL_37990.1
  • Basepair signature: cWW-tWW-L-tWW-L-cWW
  • History status: Exact match
141
228
  • IL_23448.1
IL_23448.1
  • Basepair signature: cWW-L-L-cWW
  • History status: Exact match
61
229
  • IL_37715.1
IL_37715.1
  • Basepair signature: cWW-L-R-R-R-L-L-L-L-tSS-R-R-R-cWW
  • History status: Exact match
171
230
  • IL_91078.1
IL_91078.1
  • Basepair signature: cWW-tSW-L-R-R-L-tWS-cWW
  • History status: Exact match
141
231
  • IL_41791.1
IL_41791.1
  • Basepair signature: cWW-tSW-tWH-tSW-cSH-cWS-R-R-cWW-cWW
  • History status: Exact match
121
232
  • IL_11869.1
IL_11869.1
  • Basepair signature: cWW-L-R-R-R-cWW
  • History status: Exact match
91
233
  • IL_97961.1
IL_97961.1
  • Basepair signature: cWW-tSS-L-R-cSS-R-L-L-L-L-cWW
  • History status: Exact match
131
234
  • IL_18755.1
IL_18755.1
  • Basepair signature: cWW-R-R-R-cWW
  • History status: Exact match
71
235
  • IL_61991.1
IL_61991.1
  • Basepair signature: cWW-L-cWW
  • History status: Exact match
61
236
  • IL_76256.1
IL_76256.1
  • Basepair signature: cWW-L-L-L-L-L-cWW
  • History status: Exact match
91
237
  • IL_60643.1
IL_60643.1
  • Basepair signature: cWW-tHH-cWW
  • History status: Exact match
81
238
  • IL_87544.1
IL_87544.1
  • Basepair signature: cWW-R-tWH-tHS-cWW
  • History status: Exact match
111
239
  • IL_91904.1
IL_91904.1
  • Basepair signature: cWW-L-R-R-L-L-cSS-L-cWW-cWW
  • History status: Exact match
171
240
  • IL_12507.1
IL_12507.1
  • Basepair signature: cWW-cSS-cSS-R-R-L-L-L-cWW
  • History status: Exact match
131
241
  • IL_52958.1
IL_52958.1
  • Basepair signature: cWW-L-R-R-L-L-cWW
  • History status: Exact match
101
242
  • IL_54954.1
IL_54954.1
  • Basepair signature: cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
  • History status: Exact match
  • Name: Sarcin-Ricin with extra tSH UA basepair. Yeast LSU H11.
171
243
  • IL_82601.1
IL_82601.1
  • Basepair signature: cWW-cWW-cWW-cWW
  • History status: Exact match
  • Name: Tandem cWW water-inserted CU pairs
81
244
  • IL_40845.1
IL_40845.1
  • Basepair signature: cWW-cSW-cSH-R-cWW
  • History status: Exact match
81
245
  • IL_88865.1
IL_88865.1
  • Basepair signature: cWW-L-cSH-L-cWW
  • History status: Exact match
91
246
  • IL_52509.1
IL_52509.1
  • Basepair signature: cWW-cWW-L-L-tHS-cWW
  • History status: Exact match
101
247
  • IL_77014.1
IL_77014.1
  • Basepair signature: cWW-L-L-L-tWH-cSH-L-cWW-cWW
  • History status: Exact match
111
248
  • IL_46306.1
IL_46306.1
  • Basepair signature: cWW-L-R-R-cWW-cWW
  • History status: Exact match
101
249
  • IL_91044.1
IL_91044.1
  • Basepair signature: cWW-L-R-tHW-cWW
  • History status: Exact match
111
250
  • IL_03110.1
IL_03110.1
  • Basepair signature: cWW-tSH-L-L-L-tHS-cWW-cWW
  • History status: Exact match
131
251
  • IL_65788.1
IL_65788.1
  • Basepair signature: cWW-R-R-cWW-cWW-cWW
  • History status: Exact match
101
252
  • IL_53423.1
IL_53423.1
  • Basepair signature: cWW-L-L-L-L-cWW
  • History status: Exact match
81
253
  • IL_02957.1
IL_02957.1
  • Basepair signature: cWW-R-R-cWW-tSS-cWW-cWW-L-L-L-L-L-L-L-cWW-cSS-cSS-L-cWW-cWW
  • History status: Exact match
261
254
  • IL_63952.1
IL_63952.1
  • Basepair signature: cWW-L-R-R-tHW-tHW-L-R-cWW
  • History status: Exact match
131
255
  • IL_80505.1
IL_80505.1
  • Basepair signature: cWW-L-R-R-R-R-R-R-cWW
  • History status: Exact match
111
256
  • IL_31241.1
IL_31241.1
  • Basepair signature: cWW-R-R-cWW
  • History status: Exact match
71
257
  • IL_76486.1
IL_76486.1
  • Basepair signature: cWW-tSH-tSW-tHH-cSH-tWH-tHS-cWW
  • History status: Exact match
  • Name: Sarcin-ricin motif with syn G
151
258
  • IL_17682.1
IL_17682.1
  • Basepair signature: cWW-L-R-tSH-tHW-cSH-tHH-tHS-cWW-cWW
  • History status: Exact match
  • Name: Sarcin-ricin motif from Eukaryal LSU Helix 11
171
259
  • IL_26868.1
IL_26868.1
  • Basepair signature: cWW-tSH-tHW-tWW-cWW
  • History status: Exact match
111
260
  • IL_71942.1
IL_71942.1
  • Basepair signature: cWW-L-L-L-L-L-L-cWW
  • History status: Exact match
101
261
  • IL_06471.1
IL_06471.1
  • Basepair signature: cWW-cSW-tWH-tSW-cSH-L-cWS-R-cWW
  • History status: Exact match
101
262
  • IL_06847.1
IL_06847.1
  • Basepair signature: cWW-R-cSW-R-R-tHS-cWW
  • History status: Exact match
  • Name: Group II Intron IL
131
263
  • IL_86981.1
IL_86981.1
  • Basepair signature: cWW-bif-tSH-tHW-cSH-tHH-bif-cWW
  • History status: Exact match
  • Name: Sarcin-ricin motif with CC BIfurcated pair. H.m. LSU H18.
151
264
  • IL_43316.1
IL_43316.1
  • Basepair signature: cWW-tSH-L-L-tHH-cWW
  • History status: Exact match
111
265
  • IL_67735.1
IL_67735.1
  • Basepair signature: cWW-R-R-tHS-cWW
  • History status: Exact match
91
266
  • IL_47968.1
IL_47968.1
  • Basepair signature: cWW-L-L-tSH-tHS-tHS-cWW
  • History status: Exact match
131



Exact match 266;