#Varna 2DMotifNum NtsInstances
1
  • IL_97217.4
IL_97217.4
  • Basepair signature: cWW-cWW
  • History status: Exact match
  • Single bulged A (12)
  • Single bulged U (12)
  • Multiple bulged bases (6)
  • Single bulged C (4)
  • Single bulged G (4)
  • Major groove outside cWW, minor groove, intercalation pocket (2)
  • 4235
    2
    • IL_47174.5
    IL_47174.5
    • Basepair signature: cWW-cWW-cWW
    • History status: Exact match
  • Isolated non-canonical cWW with bulges (4)
  • UU cWW (3)
  • CA cWW (2)
  • Decoding loop with one bulged A (1)
  • UU cWW water inserted (1)
  • CC cWW (1)
  • 6203
    3
    • IL_39199.2
    IL_39199.2
    • Basepair signature: cWW-tHS-cSH-cWW
    • History status: Exact match
  • Major groove platform (5)
  • Major groove platform; stack outside cWW (2)
  • 555
    4
    • IL_41766.2
    IL_41766.2
    • Basepair signature: cWW-cWW-cWW-cWW
    • History status: Exact match
  • Tandem non-canonical cWW pairs (11)
  • Decoding loop related (1)
  • 849
    5
    • IL_56465.2
    IL_56465.2
    • Basepair signature: cWW-L-cWW
    • History status: Exact match
  • Decoding loop related (3)
  • Stack and bulge (1)
  • Single stack bend (1)
  • 545
    6
    • IL_44540.2
    IL_44540.2
    • Basepair signature: cWW-cSH-tHS-cWW
    • History status: Exact match
  • Minor groove platform (5)
  • 543
    7
    • IL_87904.3
    IL_87904.3
    • Basepair signature: cWW-tSH-tHS-tHS-cWW
    • History status: Exact match
  • Triple sheared (5)
  • 1031
    8
    • IL_06390.1
    IL_06390.1
    • Basepair signature: cWW-cWH-cWW
    • History status: Exact match
  • Isolated cWH basepair (8)
  • 625
    9
    • IL_13959.2
    IL_13959.2
    • Basepair signature: cWW-tSH-tHS-cWW
    • History status: Exact match
  • Double sheared (2)
  • 824
    10
    • IL_65553.4
    IL_65553.4
    • Basepair signature: cWW-tSH-tWH-cWW-tSH-tHS-tSS-tSS-R-cWW
    • History status: Exact match
  • Kink-turn (4)
  • Kink-turn with non-sequential stacking (1)
  • 1222
    11
    • IL_93424.2
    IL_93424.2
    • Basepair signature: cWW-tSH-R-tHW-cWW
    • History status: Exact match
    922
    12
    • IL_32390.2
    IL_32390.2
    • Basepair signature: cWW-cWW
    • History status: Exact match
  • Single bulged A (1)
  • 421
    13
    • IL_73276.1
    IL_73276.1
    • Basepair signature: cWW-tWH-cSH-L-cWS-cWW
    • History status: Exact match
    720
    14
    • IL_55938.2
    IL_55938.2
    • Basepair signature: cWW-cWW-cSH-cWW
    • History status: Exact match
  • Isolated basepair with bulged bases (1)
  • 719
    15
    • IL_92027.2
    IL_92027.2
    • Basepair signature: cWW-cSW-cWW
    • History status: Exact match
  • Major groove outside cWW, minor groove, intercalation pocket (3)
  • Major groove minor groove platform; mini C-loop (2)
  • 617
    16
    • IL_85647.2
    IL_85647.2
    • Basepair signature: cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
    • History status: Exact match
  • 8x7 Sarcin-Ricin; G-bulge (2)
  • 1516
    17
    • IL_06429.2
    IL_06429.2
    • Basepair signature: cWW-cWW
    • History status: Exact match
  • Basepair outside cWW (2)
  • Stack outside cWW (1)
  • Multiple bulged bases (1)
  • Single bulged C (1)
  • 416
    18
    • IL_31555.3
    IL_31555.3
    • Basepair signature: cWW-cWW-tSH-tHS-cWW
    • History status: Exact match
  • Tandem non-canonical cWW pairs (2)
  • UAA/GAN related (1)
  • UAA/GAN variation (1)
  • 915
    19
    • IL_94430.3
    IL_94430.3
    • Basepair signature: cWW-cWS-cWW
    • History status: Exact match
    515
    20
    • IL_24982.3
    IL_24982.3
    • Basepair signature: cWW-tSH-tHW-tHS-cWW
    • History status: Exact match
    1015
    21
    • IL_49493.2
    IL_49493.2
    • Basepair signature: cWW-tSH-tHH-cSH-tWH-tHS-cWW
    • History status: Exact match
  • 7x6 Sarcin-Ricin; G-bulge (1)
  • 1314
    22
    • IL_27618.2
    IL_27618.2
    • Basepair signature: cWW-cWW-cSH-cWW
    • History status: Exact match
    711
    23
    • IL_21304.1
    IL_21304.1
    • Basepair signature: cWW-tHS-cWW
    • History status: Exact match
    611
    24
    • IL_46648.1
    IL_46648.1
    • Basepair signature: cWW-tHS-cWW
    • History status: Exact match
    511
    25
    • IL_40090.2
    IL_40090.2
    • Basepair signature: cWW-cWS-cWW
    • History status: Exact match
    611
    26
    • IL_24546.2
    IL_24546.2
    • Basepair signature: cWW-L-L-L-cSH-L-cWW
    • History status: Exact match
    1010
    27
    • IL_58291.2
    IL_58291.2
    • Basepair signature: cWW-L-L-cWW
    • History status: Exact match
    69
    28
    • IL_92114.3
    IL_92114.3
    • Basepair signature: cWW-cSH-tHW-L-cWW
    • History status: Exact match
  • Receptor of 11-nt loop-receptor motif (4)
  • 99
    29
    • IL_47444.3
    IL_47444.3
    • Basepair signature: cWW-tSH-tWH-tHW-tHS-cWW-cWW
    • History status: Exact match
  • tSH-tHW-tHS-cWW (2)
  • Other IL (1)
  • 129
    30
    • IL_02809.1
    IL_02809.1
    • Basepair signature: cWW-cWW-cWW-cWW
    • History status: Exact match
  • Tandem non-canonical cWW pairs (3)
  • Pseudoknot (1)
  • 88
    31
    • IL_90459.2
    IL_90459.2
    • Basepair signature: cWW-cWW-cWW
    • History status: Exact match
    68
    32
    • IL_92321.2
    IL_92321.2
    • Basepair signature: cWW-cWW-tSH-tHS-tHS-cWW
    • History status: Exact match
    128
    33
    • IL_86357.2
    IL_86357.2
    • Basepair signature: cWW-tWW-cWW
    • History status: Exact match
    67
    34
    • IL_83451.2
    IL_83451.2
    • Basepair signature: cWW-cWW-cSW-cWW-cSH-cWW
    • History status: Exact match
    97
    35
    • IL_73000.2
    IL_73000.2
    • Basepair signature: cWW-cSW-cSH-cWW
    • History status: Exact match
  • Minor groove platform (1)
  • 67
    36
    • IL_25230.2
    IL_25230.2
    • Basepair signature: cWW-tSH-tHW-bif-L-R-bif-tWH-tHS-cWW
    • History status: Exact match
  • Bacterial 5S Loop E (3)
  • 186
    37
    • IL_44067.2
    IL_44067.2
    • Basepair signature: cWW-L-R-tSH-tSH-tHS-cWW-cWW
    • History status: Exact match
    146
    38
    • IL_08926.1
    IL_08926.1
    • Basepair signature: cWW-cHH-cWW
    • History status: Exact match
    56
    39
    • IL_70237.3
    IL_70237.3
    • Basepair signature: cWW-L-L-cWS-tSW-R-R-cWW
    • History status: Exact match
    106
    40
    • IL_89088.1
    IL_89088.1
    • Basepair signature: cWW-cWW
    • History status: Exact match
  • Multiple bulged bases (1)
  • 46
    41
    • IL_13069.2
    IL_13069.2
    • Basepair signature: cWW-cWW
    • History status: Exact match
    46
    42
    • IL_54420.1
    IL_54420.1
    • Basepair signature: cWW-R-R-tHS-cWW
    • History status: Exact match
  • Major groove minor groove platform with extra cWW (1)
  • 86
    43
    • IL_24022.2
    IL_24022.2
    • Basepair signature: cWW-tWH-cSH-tSH-tWH-tHS-cWW
    • History status: Exact match
    106
    44
    • IL_10007.1
    IL_10007.1
    • Basepair signature: cWW-tSH-L-cWW
    • History status: Exact match
  • Major groove platform with extra pair (1)
  • 76
    45
    • IL_97057.2
    IL_97057.2
    • Basepair signature: cWW-cWW-tWH-L-tHS-cWW
    • History status: Exact match
    116
    46
    • IL_72158.2
    IL_72158.2
    • Basepair signature: cWW-tSH-tSH-tHH-tHS-cWW
    • History status: Exact match
    126
    47
    • IL_53635.2
    IL_53635.2
    • Basepair signature: cWW-R-tHW-tHW-tWW-cWW
    • History status: Exact match
    116
    48
    • IL_78732.3
    IL_78732.3
    • Basepair signature: cWW-cWH-tWS-cWW
    • History status: Exact match
  • cWH basepair and non-canonical AC (2)
  • 85
    49
    • IL_82188.1
    IL_82188.1
    • Basepair signature: cWW-tSH-L-R-R-R-R-L-L-L-cWW
    • History status: Exact match
    145
    50
    • IL_45262.2
    IL_45262.2
    • Basepair signature: cWW-L-L-L-tHS-cWW
    • History status: Exact match
    95
    51
    • IL_79083.2
    IL_79083.2
    • Basepair signature: cWW-tSH-L-R-L-tHH-cWW
    • History status: Exact match
    115
    52
    • IL_01239.1
    IL_01239.1
    • Basepair signature: cWW-L-R-R-cWW
    • History status: Exact match
    75
    53
    • IL_71288.1
    IL_71288.1
    • Basepair signature: cWW-cSW-R-cWW
    • History status: Exact match
    75
    54
    • IL_02359.2
    IL_02359.2
    • Basepair signature: cWW-tSS-tHH-cSW-bif-tSH-tWH-R-R-tHS-cWW
    • History status: Exact match
    165
    55
    • IL_90133.1
    IL_90133.1
    • Basepair signature: cWW-bif-tSH-cWW
    • History status: Exact match
    75
    56
    • IL_92484.1
    IL_92484.1
    • Basepair signature: cWW-cSH-R-R-cWW
    • History status: Exact match
    75
    57
    • IL_77263.1
    IL_77263.1
    • Basepair signature: cWW-tSH-tHS-tSS-R-cWW
    • History status: Exact match
  • Kink-turn from U4 (3)
  • 105
    58
    • IL_93568.1
    IL_93568.1
    • Basepair signature: cWW-tSH-tHS-L-R-R-L-cWW
    • History status: Exact match
    124
    59
    • IL_47758.1
    IL_47758.1
    • Basepair signature: cWW-cHW-cWW-cWW
    • History status: Exact match
    84
    60
    • IL_40387.4
    IL_40387.4
    • Basepair signature: cWW-cWW-cSH-R-cWW
    • History status: Exact match
    84
    61
    • IL_22732.1
    IL_22732.1
    • Basepair signature: cWW-tSH-tWH-tHS-cWW
    • History status: Exact match
  • tSH-tHW (1)
  • 94
    62
    • IL_62661.2
    IL_62661.2
    • Basepair signature: cWW-tSH-L-R-tHS-cWW
    • History status: Exact match
    104
    63
    • IL_98556.3
    IL_98556.3
    • Basepair signature: cWW-L-R-L-cWW
    • History status: Exact match
    74
    64
    • IL_10005.1
    IL_10005.1
    • Basepair signature: cWW-L-cWW
    • History status: Exact match
    54
    65
    • IL_38807.2
    IL_38807.2
    • Basepair signature: cWW-tWH-L-tHW-cSH-cWW
    • History status: Exact match
    114
    66
    • IL_98591.2
    IL_98591.2
    • Basepair signature: cWW-cSS-tSS-tHH-tWW-tHH-tHS-cWW
    • History status: Exact match
    134
    67
    • IL_28572.1
    IL_28572.1
    • Basepair signature: cWW-tWH-cSW-L-R-R-L-tHS-cWW
    • History status: Exact match
    134
    68
    • IL_21333.1
    IL_21333.1
    • Basepair signature: cWW-tWH-tHS-cWW
    • History status: Exact match
    84
    69
    • IL_39526.3
    IL_39526.3
    • Basepair signature: cWW-L-L-L-cWW
    • History status: Exact match
    74
    70
    • IL_31066.2
    IL_31066.2
    • Basepair signature: cWW-R-cWW
    • History status: Exact match
    54
    71
    • IL_43946.1
    IL_43946.1
    • Basepair signature: cWW-tSH-tSS-tSS-R-R-R-R-cWW
    • History status: Exact match
  • Kink-turn (2)
  • 123
    72
    • IL_53774.1
    IL_53774.1
    • Basepair signature: cWW-R-R-tHS-cWW
    • History status: Exact match
    83
    73
    • IL_89028.3
    IL_89028.3
    • Basepair signature: cWW-L-R-L-L-L-L-L-L-L-cWW
    • History status: Exact match
    133
    74
    • IL_75447.1
    IL_75447.1
    • Basepair signature: cWW-cWW-cWW
    • History status: Exact match
    63
    75
    • IL_23262.3
    IL_23262.3
    • Basepair signature: cWW-R-R-R-tSW-L-L-cWW
    • History status: Exact match
    113
    76
    • IL_82563.1
    IL_82563.1
    • Basepair signature: cWW-R-tWH-R-R-R-cWW
    • History status: Exact match
    103
    77
    • IL_91547.1
    IL_91547.1
    • Basepair signature: cWW-L-R-tHS-cWW
    • History status: Exact match
    83
    78
    • IL_09348.3
    IL_09348.3
    • Basepair signature: cWW-L-cWW-cWW
    • History status: Exact match
    73
    79
    • IL_62499.4
    IL_62499.4
    • Basepair signature: cWW-R-cWW
    • History status: Exact match
  • 180 degree turn (1)
  • 53
    80
    • IL_98421.2
    IL_98421.2
    • Basepair signature: cWW-L-L-L-cWW
    • History status: Exact match
    73
    81
    • IL_95150.3
    IL_95150.3
    • Basepair signature: cWW-cHW-tHS-cWW
    • History status: Exact match
    73
    82
    • IL_52173.1
    IL_52173.1
    • Basepair signature: cWW-L-R-R-R-L-cWW
    • History status: Exact match
    93
    83
    • IL_79955.2
    IL_79955.2
    • Basepair signature: cWW-cWW-cWW-cWW-cSW-cWW
    • History status: Exact match
    123
    84
    • IL_71565.1
    IL_71565.1
    • Basepair signature: cWW-cWW
    • History status: Exact match
    43
    85
    • IL_95652.2
    IL_95652.2
    • Basepair signature: cWW-tSH-tHH-cSH-tWH-tHS-L-cWW
    • History status: Exact match
    143
    86
    • IL_34156.4
    IL_34156.4
    • Basepair signature: cWW-L-R-cWW
    • History status: Exact match
  • Isolated near basepair (1)
  • 63
    87
    • IL_80494.2
    IL_80494.2
    • Basepair signature: cWW-tWH-L-R-tHS-bif-cWW
    • History status: Exact match
    123
    88
    • IL_34363.1
    IL_34363.1
    • Basepair signature: cWW-cSS-tSS-L-tSH-tSS-L-R-R-L-cWW
    • History status: Exact match
    133
    89
    • IL_58586.2
    IL_58586.2
    • Basepair signature: cWW-R-R-cWW
    • History status: Exact match
    63
    90
    • IL_16166.2
    IL_16166.2
    • Basepair signature: cWW-R-cWW
    • History status: Exact match
  • Basepair outside cWW, intercalation pocket (1)
  • 53
    91
    • IL_34628.2
    IL_34628.2
    • Basepair signature: cWW-tSS-L-tSH-tHS-cWW-cWW
    • History status: Exact match
  • Kink-turn (1)
  • 123
    92
    • IL_16252.2
    IL_16252.2
    • Basepair signature: cWW-R-cWW
    • History status: Exact match
    53
    93
    • IL_30840.1
    IL_30840.1
    • Basepair signature: cWW-cWW-L-cWW-cWW-cWW
    • History status: Exact match
    113
    94
    • IL_36254.1
    IL_36254.1
    • Basepair signature: cWW-L-cSH-cWW
    • History status: Exact match
  • Major groove platform with intercalated tWH (1)
  • 63
    95
    • IL_37053.1
    IL_37053.1
    • Basepair signature: cWW-tSH-tSH-tHS-tSS-L-R-cWW
    • History status: Exact match
    123
    96
    • IL_16377.1
    IL_16377.1
    • Basepair signature: cWW-tSH-cWW
    • History status: Exact match
  • Minor groove platform (1)
  • 52
    97
    • IL_74876.1
    IL_74876.1
    • Basepair signature: cWW-tWH-L-R-tHS-cWW
    • History status: Exact match
    102
    98
    • IL_07300.1
    IL_07300.1
    • Basepair signature: cWW-cSH-L-cWW-cWW
    • History status: Exact match
    92
    99
    • IL_97833.1
    IL_97833.1
    • Basepair signature: cWW-cSW-tSH-tWH-tHW-tHS-cWW-cWW
    • History status: Exact match
  • tSH-tHW-tHS with extra cWW pairs (1)
  • 142
    100
    • IL_69901.1
    IL_69901.1
    • Basepair signature: cWW-R-cWW
    • History status: Exact match
    52
    101
    • IL_16415.1
    IL_16415.1
    • Basepair signature: cWW-L-R-tSH-L-R-tHS-R-R-cWW
    • History status: Exact match
    142
    102
    • IL_37197.1
    IL_37197.1
    • Basepair signature: cWW-L-L-L-tHS-cWW-cWW
    • History status: Exact match
    112
    103
    • IL_78744.1
    IL_78744.1
    • Basepair signature: cWW-tSH-tSH-tHS-tHS-cWW
    • History status: Exact match
  • Quadruple sheared (1)
  • 122
    104
    • IL_00998.1
    IL_00998.1
    • Basepair signature: cWW-R-R-tHS-cWW
    • History status: Exact match
    82
    105
    • IL_25271.1
    IL_25271.1
    • Basepair signature: cWW-cWW-tWH-tWH-tHW-tHW-cWW
    • History status: Exact match
    142
    106
    • IL_91132.1
    IL_91132.1
    • Basepair signature: cWW-L-R-L-cWW
    • History status: Exact match
    72
    107
    • IL_31707.1
    IL_31707.1
    • Basepair signature: cWW-L-L-L-cWW-L-bif-cWW
    • History status: Exact match
  • Vitamin B12 Aptamer (1)
  • 112
    108
    • IL_94744.1
    IL_94744.1
    • Basepair signature: cWW-cWW-L-R-tSH-tHH-cSH-tWH-tHS-cWW
    • History status: Exact match
  • 9x8 Sarcin-Ricin with GA cWW pair; G-bulge (1)
  • 172
    109
    • IL_01054.1
    IL_01054.1
    • Basepair signature: cWW-L-R-R-R-cWW
    • History status: Exact match
    82
    110
    • IL_70280.1
    IL_70280.1
    • Basepair signature: cWW-cWW-L-R-R-L-cWW
    • History status: Exact match
    102
    111
    • IL_57785.5
    IL_57785.5
    • Basepair signature: cWW-cSW-tHS-cWW
    • History status: Exact match
    82
    112
    • IL_23414.1
    IL_23414.1
    • Basepair signature: cWW-L-R-R-R-cSH-R-bif-tWH-R-R-R-R-R-L-cWW
    • History status: Exact match
    212
    113
    • IL_37406.1
    IL_37406.1
    • Basepair signature: cWW-R-R-R-cWW
    • History status: Exact match
    72
    114
    • IL_50521.1
    IL_50521.1
    • Basepair signature: cWW-tSH-cWH-tWH-tSS-tHW-L-cWW
    • History status: Exact match
    142
    115
    • IL_89231.1
    IL_89231.1
    • Basepair signature: cWW-L-L-L-tWH-L-L-L-cWW
    • History status: Exact match
    122
    116
    • IL_40892.1
    IL_40892.1
    • Basepair signature: cWW-L-L-L-L-cWW
    • History status: Exact match
    82
    117
    • IL_45794.1
    IL_45794.1
    • Basepair signature: cWW-L-R-R-tWW-tWW-cWW
    • History status: Exact match
    112
    118
    • IL_76095.3
    IL_76095.3
    • Basepair signature: cWW-cWW-tSH-R-tHW-tHW-tWH-L-cWW-cWW
    • History status: Exact match
    182
    119
    • IL_09882.1
    IL_09882.1
    • Basepair signature: cWW-tSH-tHW-tWH-tHS-cWW
    • History status: Exact match
  • tSH-tHW-tWH-tHS (2)
  • 122
    120
    • IL_33965.1
    IL_33965.1
    • Basepair signature: cWW-L-R-R-L-cWW
    • History status: Exact match
    82
    121
    • IL_80093.1
    IL_80093.1
    • Basepair signature: cWW-L-R-tHH-tHS-cWW
    • History status: Exact match
    102
    122
    • IL_90057.1
    IL_90057.1
    • Basepair signature: cWW-tSS-L-L-cSS-tWH-tSW-cWS-cSS-tWS-cSH-cWH-cHW-cSH-R-R-cWW
    • History status: Exact match
    232
    123
    • IL_98566.1
    IL_98566.1
    • Basepair signature: cWW-L-R-R-R-cWW
    • History status: Exact match
    82
    124
    • IL_41397.2
    IL_41397.2
    • Basepair signature: cWW-L-R-R-R-cWW
    • History status: Exact match
    82
    125
    • IL_82831.2
    IL_82831.2
    • Basepair signature: cWW-tSH-L-R-R-R-R-R-L-cWW
    • History status: Exact match
    132
    126
    • IL_46435.1
    IL_46435.1
    • Basepair signature: cWW-L-L-L-L-L-L-L-L-L-cWW
    • History status: Exact match
    132
    127
    • IL_87336.1
    IL_87336.1
    • Basepair signature: cWW-L-R-L-L-cWW
    • History status: Exact match
    82
    128
    • IL_52940.1
    IL_52940.1
    • Basepair signature: cWW-L-R-R-R-R-L-L-L-tWW-cWW
    • History status: Exact match
    142
    129
    • IL_65137.1
    IL_65137.1
    • Basepair signature: cWW-L-cSS-tWH-tHW-L-cWW-cWW
    • History status: Exact match
    122
    130
    • IL_15840.2
    IL_15840.2
    • Basepair signature: cWW-tSH-tSH-L-R-L-cWW
    • History status: Exact match
    112
    131
    • IL_54965.1
    IL_54965.1
    • Basepair signature: cWW-cWW-L-R-L-cWW
    • History status: Exact match
    92
    132
    • IL_77076.1
    IL_77076.1
    • Basepair signature: cWW-tSH-tSS-tSS-tWH-tWH-R-R-R-R-R-R-cWW
    • History status: Exact match
    182
    133
    • IL_28942.1
    IL_28942.1
    • Basepair signature: cWW-L-tWH-R-R-R-cWW
    • History status: Exact match
    92
    134
    • IL_55287.1
    IL_55287.1
    • Basepair signature: cWW-L-R-R-L-L-L-cWW
    • History status: Exact match
    102
    135
    • IL_58811.1
    IL_58811.1
    • Basepair signature: cWW-L-R-R-L-L-cWW
    • History status: Exact match
    92
    136
    • IL_87548.1
    IL_87548.1
    • Basepair signature: cWW-tSH-tHW-L-cSH-R-cWW
    • History status: Exact match
    112
    137
    • IL_11751.1
    IL_11751.1
    • Basepair signature: cWW-L-L-L-cWW
    • History status: Exact match
    72
    138
    • IL_25174.1
    IL_25174.1
    • Basepair signature: cWW-R-cWW-cWW
    • History status: Exact match
  • Isolated non-canonical cWW with bulges (1)
  • 72
    139
    • IL_16330.1
    IL_16330.1
    • Basepair signature: cWW-cWW-L-R-R-R-R-R-R-R-R-R-L-L-L-L-L-tHH-tHS-cWW
    • History status: Exact match
    252
    140
    • IL_21495.1
    IL_21495.1
    • Basepair signature: cWW-L-R-R-R-tHW-tHW-bif-cWW
    • History status: Exact match
    142
    141
    • IL_12211.1
    IL_12211.1
    • Basepair signature: cWW-L-R-R-R-L-L-cWW-cWW
    • History status: Exact match
    122
    142
    • IL_81441.1
    IL_81441.1
    • Basepair signature: cWW-R-cWW
    • History status: Exact match
    52
    143
    • IL_03282.1
    IL_03282.1
    • Basepair signature: cWW-tHW-tHS-cWW-cWW
    • History status: Exact match
    101
    144
    • IL_31241.1
    IL_31241.1
    • Basepair signature: cWW-R-R-cWW
    • History status: Exact match
    61
    145
    • IL_85510.1
    IL_85510.1
    • Basepair signature: cWW-L-L-cWW
    • History status: Exact match
    61
    146
    • IL_22579.1
    IL_22579.1
    • Basepair signature: cWW-L-R-R-R-R-L-cWW
    • History status: Exact match
    101
    147
    • IL_37150.1
    IL_37150.1
    • Basepair signature: cWW-tHH-tHS-cWW
    • History status: Exact match
    81
    148
    • IL_60649.1
    IL_60649.1
    • Basepair signature: cWW-cSS-L-L-L-tSS-tHW-L-R-cWW
    • History status: Exact match
    111
    149
    • IL_88403.1
    IL_88403.1
    • Basepair signature: cWW-cSH-L-cSW-cWW-R-R-cWW
    • History status: Exact match
    111
    150
    • IL_12486.1
    IL_12486.1
    • Basepair signature: cWW-cWW-L-R-R-R-L-L-cWW-cWW
    • History status: Exact match
    141
    151
    • IL_82113.1
    IL_82113.1
    • Basepair signature: cWW-cWW-L-R-R-R-R-L-L-L-L-L-cWW
    • History status: Exact match
    161
    152
    • IL_91089.1
    IL_91089.1
    • Basepair signature: cWW-L-L-L-L-cWW
    • History status: Exact match
    81
    153
    • IL_03741.1
    IL_03741.1
    • Basepair signature: cWW-cWW-L-R-R-R-R-R-L-tHS-cWW
    • History status: Exact match
    151
    154
    • IL_75415.1
    IL_75415.1
    • Basepair signature: cWW-L-L-L-L-L-L-cWW
    • History status: Exact match
    101
    155
    • IL_47968.1
    IL_47968.1
    • Basepair signature: cWW-L-L-tSH-tHS-tHS-cWW
    • History status: Exact match
    121
    156
    • IL_61730.1
    IL_61730.1
    • Basepair signature: cWW-L-R-L-tHW-L-L-cWW
    • History status: Exact match
    111
    157
    • IL_97842.1
    IL_97842.1
    • Basepair signature: cWW-R-R-R-R-cWS-cWW-cWW-L-R-cWW
    • History status: Exact match
    161
    158
    • IL_12507.1
    IL_12507.1
    • Basepair signature: cWW-cSS-cSS-R-R-L-L-L-cWW
    • History status: Exact match
    111
    159
    • IL_40527.1
    IL_40527.1
    • Basepair signature: cWW-L-R-tSS-L-tSH-L-R-L-cWW-cWW
    • History status: Exact match
    151
    160
    • IL_53988.1
    IL_53988.1
    • Basepair signature: cWW-cSW-L-L-tHS-cWS-cWW
    • History status: Exact match
    121
    161
    • IL_05221.1
    IL_05221.1
    • Basepair signature: cWW-cWW-bif-tHW-cWH-tSW-cSH-cWH-cSH-tHS-cWW
    • History status: Exact match
    151
    162
    • IL_17603.1
    IL_17603.1
    • Basepair signature: cWW-tSH-R-tHH-tHS-cWW
    • History status: Exact match
    111
    163
    • IL_56513.1
    IL_56513.1
    • Basepair signature: cWW-L-cWW
    • History status: Exact match
    51
    164
    • IL_85805.1
    IL_85805.1
    • Basepair signature: cWW-L-R-R-R-cWW
    • History status: Exact match
    81
    165
    • IL_09333.1
    IL_09333.1
    • Basepair signature: cWW-tWH-tWH-tHW-tHW-cWW
    • History status: Exact match
    121
    166
    • IL_37347.1
    IL_37347.1
    • Basepair signature: cWW-cHW-L-tHW-tHW-tHW-bif-cWW
    • History status: Exact match
    151
    167
    • IL_61991.1
    IL_61991.1
    • Basepair signature: cWW-L-cWW
    • History status: Exact match
    51
    168
    • IL_78809.1
    IL_78809.1
    • Basepair signature: cWW-bif-R-cWW
    • History status: Exact match
    61
    169
    • IL_97961.1
    IL_97961.1
    • Basepair signature: cWW-tSS-L-R-cSS-R-L-L-L-L-cWW
    • History status: Exact match
    121
    170
    • IL_25307.1
    IL_25307.1
    • Basepair signature: cWW-tHH-L-R-L-cWW
    • History status: Exact match
    91
    171
    • IL_40845.1
    IL_40845.1
    • Basepair signature: cWW-cSW-cSH-R-cWW
    • History status: Exact match
    71
    172
    • IL_05462.1
    IL_05462.1
    • Basepair signature: cWW-R-cWW
    • History status: Exact match
    51
    173
    • IL_17682.1
    IL_17682.1
    • Basepair signature: cWW-L-R-tSH-tHW-cSH-tHH-tHS-cWW-cWW
    • History status: Exact match
    171
    174
    • IL_31754.1
    IL_31754.1
    • Basepair signature: cWW-cSW-tHW-cSH-tWH-tHS-cWW
    • History status: Exact match
    131
    175
    • IL_75688.1
    IL_75688.1
    • Basepair signature: cWW-L-R-R-L-L-L-cSH-L-L-cWW
    • History status: Exact match
    141
    176
    • IL_86059.1
    IL_86059.1
    • Basepair signature: cWW-cWW
    • History status: Exact match
    41
    177
    • IL_94973.1
    IL_94973.1
    • Basepair signature: cWW-L-R-L-tHH-cSH-tWH-tHS-cWW
    • History status: Exact match
    141
    178
    • IL_13682.1
    IL_13682.1
    • Basepair signature: cWW-cSH-tHW-cWW
    • History status: Exact match
  • Receptor of 11-nt loop-receptor motif (1)
  • 81
    179
    • IL_26868.1
    IL_26868.1
    • Basepair signature: cWW-tSH-tHW-tWW-cWW
    • History status: Exact match
    101
    180
    • IL_54450.1
    IL_54450.1
    • Basepair signature: cWW-L-R-cWW-cWW
    • History status: Exact match
    81
    181
    • IL_82601.1
    IL_82601.1
    • Basepair signature: cWW-cWW-cWW-cWW
    • History status: Exact match
  • Tandem non-canonical cWW pairs (1)
  • 81
    182
    • IL_91904.1
    IL_91904.1
    • Basepair signature: cWW-L-R-R-L-L-cSS-L-cWW-cWW
    • History status: Exact match
    131
    183
    • IL_06306.1
    IL_06306.1
    • Basepair signature: cWW-L-R-R-R-R-R-R-R-L-cWW
    • History status: Exact match
    131
    184
    • IL_18755.1
    IL_18755.1
    • Basepair signature: cWW-R-R-R-cWW
    • History status: Exact match
    71
    185
    • IL_57977.1
    IL_57977.1
    • Basepair signature: cWW-tSH-L-R-L-tHS-cWW
    • History status: Exact match
    111
    186
    • IL_23639.1
    IL_23639.1
    • Basepair signature: cWW-tWH-tHS-L-cWW
    • History status: Exact match
    91
    187
    • IL_37715.1
    IL_37715.1
    • Basepair signature: cWW-L-R-R-R-L-L-L-L-tSS-R-R-R-cWW
    • History status: Exact match
    161
    188
    • IL_89794.1
    IL_89794.1
    • Basepair signature: cWW-tSH-tSH-tSS-tSS-R-cWW
    • History status: Exact match
    111
    189
    • IL_26971.1
    IL_26971.1
    • Basepair signature: cWW-tSH-L-R-R-R-L-cWW
    • History status: Exact match
    101
    190
    • IL_41139.1
    IL_41139.1
    • Basepair signature: cWW-L-R-L-cWW
    • History status: Exact match
    71
    191
    • IL_54576.1
    IL_54576.1
    • Basepair signature: cWW-bif-L-cWW
    • History status: Exact match
    71
    192
    • IL_82650.1
    IL_82650.1
    • Basepair signature: cWW-cWS-tSH-tHS-L-R-L-cWW
    • History status: Exact match
    131
    193
    • IL_20775.1
    IL_20775.1
    • Basepair signature: cWW-R-tHS-cWW
    • History status: Exact match
    71
    194
    • IL_46306.1
    IL_46306.1
    • Basepair signature: cWW-L-R-R-cWW-cWW
    • History status: Exact match
    91
    195
    • IL_76256.1
    IL_76256.1
    • Basepair signature: cWW-L-L-L-L-L-cWW
    • History status: Exact match
    91
    196
    • IL_86981.1
    IL_86981.1
    • Basepair signature: cWW-bif-tSH-tHW-cSH-tHH-bif-cWW
    • History status: Exact match
    151
    197
    • IL_37990.1
    IL_37990.1
    • Basepair signature: cWW-tWW-L-tWW-L-cWW
    • History status: Exact match
    101
    198
    • IL_52509.1
    IL_52509.1
    • Basepair signature: cWW-cWW-L-L-tHS-cWW
    • History status: Exact match
    101
    199
    • IL_63952.1
    IL_63952.1
    • Basepair signature: cWW-L-R-R-tHW-tHW-L-R-cWW
    • History status: Exact match
    131
    200
    • IL_02690.1
    IL_02690.1
    • Basepair signature: cWW-tSS-L-cSS-R-L-L-L-L-cWW
    • History status: Exact match
    111
    201
    • IL_15205.1
    IL_15205.1
    • Basepair signature: cWW-cWW-L-cSW-L-tHS-cWW
    • History status: Exact match
    121
    202
    • IL_54954.1
    IL_54954.1
    • Basepair signature: cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
    • History status: Exact match
    161
    203
    • IL_71685.1
    IL_71685.1
    • Basepair signature: cWW-cWW-bif-R-cSH-tWH-tHS-cWW
    • History status: Exact match
    141
    204
    • IL_21254.1
    IL_21254.1
    • Basepair signature: cWW-tWH-cWW-tHS-tSS-R-R-cWW
    • History status: Exact match
    121
    205
    • IL_58454.1
    IL_58454.1
    • Basepair signature: cWW-tSH-L-R-R-cWW
    • History status: Exact match
    91
    206
    • IL_76486.1
    IL_76486.1
    • Basepair signature: cWW-tSH-tSW-tHH-cSH-tWH-tHS-cWW
    • History status: Exact match
    151
    207
    • IL_96031.1
    IL_96031.1
    • Basepair signature: cWW-cWW-cWW-cWW
    • History status: Exact match
  • Tandem non-canonical cWW pairs (1)
  • 81
    208
    • IL_71942.1
    IL_71942.1
    • Basepair signature: cWW-L-L-L-L-L-L-cWW
    • History status: Exact match
    101
    209
    • IL_83250.1
    IL_83250.1
    • Basepair signature: cWW-tWH-R-R-R-cSH-cWW-cWW
    • History status: Exact match
    111
    210
    • IL_92280.1
    IL_92280.1
    • Basepair signature: cWW-tSH-L-R-R-L-L-L-cWW
    • History status: Exact match
    121
    211
    • IL_06468.1
    IL_06468.1
    • Basepair signature: cWW-tWH-R-R-R-cWW-cWW
    • History status: Exact match
    101
    212
    • IL_87544.1
    IL_87544.1
    • Basepair signature: cWW-R-tWH-tHS-cWW
    • History status: Exact match
    91
    213
    • IL_11302.1
    IL_11302.1
    • Basepair signature: cWW-L-R-R-tHW-L-cWW
    • History status: Exact match
    101
    214
    • IL_52958.1
    IL_52958.1
    • Basepair signature: cWW-L-R-R-L-L-cWW
    • History status: Exact match
    91
    215
    • IL_80505.1
    IL_80505.1
    • Basepair signature: cWW-L-R-R-R-R-R-R-cWW
    • History status: Exact match
    111
    216
    • IL_98655.1
    IL_98655.1
    • Basepair signature: cWW-L-cHW-L-L-tHH-tSW-L-cWW
    • History status: Exact match
    131
    217
    • IL_02835.1
    IL_02835.1
    • Basepair signature: cWW-L-L-L-L-L-tHH-tHS-cWW
    • History status: Exact match
    131
    218
    • IL_41791.1
    IL_41791.1
    • Basepair signature: cWW-tSW-tWH-tSW-cSH-cWS-R-R-cWW-cWW
    • History status: Exact match
    111
    219
    • IL_06471.1
    IL_06471.1
    • Basepair signature: cWW-cSW-tWH-tSW-cSH-L-cWS-R-cWW
    • History status: Exact match
    101
    220
    • IL_77195.1
    IL_77195.1
    • Basepair signature: cWW-cSH-R-cWW
    • History status: Exact match
    61
    221
    • IL_97073.1
    IL_97073.1
    • Basepair signature: cWW-R-R-R-tHS-cWW
    • History status: Exact match
    91
    222
    • IL_25082.1
    IL_25082.1
    • Basepair signature: cWW-L-R-R-L-L-tSH-tSS-cWW-cWW-cWW
    • History status: Exact match
    171
    223
    • IL_39324.1
    IL_39324.1
    • Basepair signature: cWW-tSS-tHH-cSW-bif-tSH-tWH-R-R-tHS-cWW-cWW
    • History status: Exact match
    181
    224
    • IL_53323.1
    IL_53323.1
    • Basepair signature: cWW-L-R-R-L-cWW-cWW
    • History status: Exact match
    101
    225
    • IL_65788.1
    IL_65788.1
    • Basepair signature: cWW-R-R-cWW-cWW-cWW
    • History status: Exact match
    101
    226
    • IL_80652.1
    IL_80652.1
    • Basepair signature: cWW-R-cSH-tWH-tSH-tHS-cWW
    • History status: Exact match
    131
    227
    • IL_90880.1
    IL_90880.1
    • Basepair signature: cWW-tWW-L-tWH-R-R-R-R-R-R-R-tHH-tHS-cWW
    • History status: Exact match
    201
    228
    • IL_98688.1
    IL_98688.1
    • Basepair signature: cWW-L-tSS-cWW
    • History status: Exact match
    71
    229
    • IL_02957.1
    IL_02957.1
    • Basepair signature: cWW-R-R-cWW-tSS-cWW-cWW-L-L-L-L-L-L-L-cWW-cSS-cSS-L-cWW-cWW
    • History status: Exact match
    261
    230
    • IL_41864.1
    IL_41864.1
    • Basepair signature: cWW-L-R-cHW-L-L-cSH-L-cWW
    • History status: Exact match
    131
    231
    • IL_55649.1
    IL_55649.1
    • Basepair signature: cWW-tWH-L-R-cWW
    • History status: Exact match
    81
    232
    • IL_83856.1
    IL_83856.1
    • Basepair signature: cWW-cWW-tWW-tHS-cWW-cWW
    • History status: Exact match
    121
    233
    • IL_06808.1
    IL_06808.1
    • Basepair signature: cWW-tSH-tHS-cWW
    • History status: Exact match
    81
    234
    • IL_21421.1
    IL_21421.1
    • Basepair signature: cWW-L-R-tSH-tSS-tSS-tWH-tSH-R-R-R-R-R-R-cWW
    • History status: Exact match
    201
    235
    • IL_59529.1
    IL_59529.1
    • Basepair signature: cWW-tWH-tHH-tHS-cWW
    • History status: Exact match
    101
    236
    • IL_97191.1
    IL_97191.1
    • Basepair signature: cWW-cWW-tHH-cSH-tWH-tHS-cWW
    • History status: Exact match
  • 7x6 Sarcin-Ricin with UU cWW pair; G-bulge (1)
  • 131
    237
    • IL_11869.1
    IL_11869.1
    • Basepair signature: cWW-L-R-R-R-cWW
    • History status: Exact match
    81
    238
    • IL_53423.1
    IL_53423.1
    • Basepair signature: cWW-L-L-L-L-cWW
    • History status: Exact match
    81
    239
    • IL_66744.1
    IL_66744.1
    • Basepair signature: cWW-L-R-R-L-L-L-L-cWW-cWW
    • History status: Exact match
    131
    240
    • IL_81398.1
    IL_81398.1
    • Basepair signature: cWW-L-R-cWW-cWW-cWW
    • History status: Exact match
    101
    241
    • IL_91044.1
    IL_91044.1
    • Basepair signature: cWW-L-R-tHW-cWW
    • History status: Exact match
    81
    242
    • IL_98924.1
    IL_98924.1
    • Basepair signature: cWW-L-L-L-cWW-cWW
    • History status: Exact match
    91
    243
    • IL_03110.1
    IL_03110.1
    • Basepair signature: cWW-tSH-L-L-L-tHS-cWW-cWW
    • History status: Exact match
    131
    244
    • IL_43316.1
    IL_43316.1
    • Basepair signature: cWW-tSH-L-L-tHH-cWW
    • History status: Exact match
    101
    245
    • IL_55934.1
    IL_55934.1
    • Basepair signature: cWW-L-L-tSH-L-R-bif-L-cWW-cWW
    • History status: Exact match
    151
    246
    • IL_83920.1
    IL_83920.1
    • Basepair signature: cWW-cWW-L-cWW
    • History status: Exact match
    71
    247
    • IL_06847.1
    IL_06847.1
    • Basepair signature: cWW-R-cSW-R-R-tHS-cWW
    • History status: Exact match
    111
    248
    • IL_47687.1
    IL_47687.1
    • Basepair signature: cWW-tWH-tWH-tWH-L-R-L-tWW-cWW
    • History status: Exact match
    131
    249
    • IL_60643.1
    IL_60643.1
    • Basepair signature: cWW-tHH-cWW
    • History status: Exact match
    61
    250
    • IL_77296.1
    IL_77296.1
    • Basepair signature: cWW-R-R-R-R-R-R-R-R-R-R-cWW
    • History status: Exact match
    141
    251
    • IL_88367.1
    IL_88367.1
    • Basepair signature: cWW-bif-R-cSH-tWH-tHS-L-R-tSH-cWW
    • History status: Exact match
    151
    252
    • IL_25181.1
    IL_25181.1
    • Basepair signature: cWW-cWW-L-R-R-tHW-bif-cWW
    • History status: Exact match
    131
    253
    • IL_67735.1
    IL_67735.1
    • Basepair signature: cWW-R-R-tHS-cWW
    • History status: Exact match
    81
    254
    • IL_91078.1
    IL_91078.1
    • Basepair signature: cWW-tSW-L-R-R-L-tWS-cWW
    • History status: Exact match
    121

    Coloring options:


    Exact match 266;

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