1Q81 | Motifs

72 Hairpin loops
104 Internal loops
10 Junction loops

Valid loops

#	loop id	location	annotation (mapped to, source)	motif group (similar to)
1	HL_1Q81_001	1/A/55:64	homologous HL_4V9F_001	NA HL_55136.1*
2	HL_1Q81_002	1/A/83:91	homologous HL_4V9F_002	NA HL_44769.1*
3	HL_1Q81_003	1/A/118:122	homologous HL_4V9F_003	NA HL_94352.4*
4	HL_1Q81_005	1/A/136:142	homologous HL_4V9F_005	NA HL_79299.11*
5	HL_1Q81_006	1/A/164:171	homologous HL_4V9F_006	NA HL_23481.5*
6	HL_1Q81_007	1/A/195:201	homologous HL_4V9F_007	NA HL_12053.1*
7	HL_1Q81_008	1/A/217:223	homologous HL_4V9F_008	NA HL_67216.5*
8	HL_1Q81_009	1/A/252:257	GNRA homologous HL_4V9F_009	NA HL_43074.18*
9	HL_1Q81_010	1/A/312:319	T-loop with 1 bulged base homologous HL_4V9F_010	NA HL_68493.6*
10	HL_1Q81_011	1/A/326:330	homologous HL_4V9F_011	NA HL_98557.5*
11	HL_1Q81_012	1/A/334:342	homologous HL_4V9F_012	NA HL_08002.6*
12	HL_1Q81_013	1/A/390:399	homologous HL_4V9F_013	NA HL_10536.1*
13	HL_1Q81_014	1/A/416:424	homologous HL_4V9F_014	NA HL_46142.8*
14	HL_1Q81_015	1/A/468:473	GNRA homologous HL_4V9F_015	NA HL_43074.18*
15	HL_1Q81_016	1/A/493:499	GNRA with one bulged base homologous HL_4V9F_016	NA HL_02361.6*
16	HL_1Q81_017	1/A/576:581	GNRA homologous HL_4V9F_017	NA HL_43074.18*
17	HL_1Q81_018	1/A/623:632	geometric HL_7RQB_018	NA HL_33239.17*
18	HL_1Q81_019	1/A/670:676	homologous HL_4V9F_019	NA HL_37407.2*
19	HL_1Q81_020	1/A/690:695	GNRA homologous HL_4V9F_020	NA HL_43074.18*
20	HL_1Q81_022	1/A/733:738	Other HL homologous HL_4V9F_022	NA HL_43074.18*
21	HL_1Q81_023	1/A/804:809	GNRA homologous HL_4V9F_023	NA HL_43074.18*
22	HL_1Q81_024	1/A/837:846	homologous HL_4V9F_024	NA HL_39334.5*
23	HL_1Q81_025	1/A/872:878	homologous HL_4V9F_025	NA HL_16898.3*
24	HL_1Q81_026	1/A/919:924	homologous HL_4V9F_026	NA HL_15942.5*
25	HL_1Q81_028	1/A/1054:1060	GNRA homologous HL_4V9F_028	NA HL_43074.18*
26	HL_1Q81_029	1/A/1076:1083	homologous HL_4V9F_029	NA HL_72451.5*
27	HL_1Q81_031	1/A/1196:1203	homologous HL_4V9F_031	NA
28	HL_1Q81_032	1/A/1274:1282	homologous HL_4V9F_032	NA HL_82851.1*
29	HL_1Q81_033	1/A/1326:1331	GNRA homologous HL_4V9F_033	NA HL_43074.18*
30	HL_1Q81_034	1/A/1387:1395	T-loop with 2 stacked bulged bases homologous HL_4V9F_034	NA HL_33239.17*
31	HL_1Q81_035	1/A/1430:1436	homologous HL_4V9F_035	NA HL_86880.5*
32	HL_1Q81_036	1/A/1468:1474	GNRA homologous HL_4V9F_036	NA HL_43074.18*
33	HL_1Q81_037	1/A/1498:1507	homologous HL_4V9F_037	NA HL_78457.4*
34	HL_1Q81_039	1/A/1594:1600	Other HL homologous HL_4V9F_039	NA HL_68493.6*
35	HL_1Q81_040	1/A/1628:1633	GNRA homologous HL_4V9F_040	NA HL_43074.18*
36	HL_1Q81_041	1/A/1651:1655	homologous HL_4V9F_041	NA HL_69353.7*
37	HL_1Q81_042	1/A/1687:1694	homologous HL_4V9F_042	NA HL_66171.3*
38	HL_1Q81_043	1/A/1705:1713	homologous HL_4V9F_043	NA HL_21000.1*
39	HL_1Q81_044	1/A/1769:1774	UNCG geometric HL_4V9F_044	NA HL_79299.11*
40	HL_1Q81_045	1/A/1793:1799	GNRA homologous HL_4V9F_045	NA HL_43074.18*
41	HL_1Q81_046	1/A/1808:1812	homologous HL_4V9F_046	NA HL_79272.3*
42	HL_1Q81_047	1/A/1833:1843	homologous HL_4V9F_047	NA HL_43613.4*
43	HL_1Q81_048	1/A/1862:1867	GNRA homologous HL_4V9F_048	NA HL_43074.18*
44	HL_1Q81_049	1/A/1916:1923	homologous HL_4V9F_049	NA HL_53760.4*
45	HL_1Q81_051	1/A/1990:1998	homologous HL_4V9F_051	NA HL_53760.4*
46	HL_1Q81_052	1/A/2068:2077	homologous HL_4V9F_052	NA HL_90642.5*
47	HL_1Q81_054	1/A/2248:2253	GNRA homologous HL_4V9F_054	NA HL_43074.18*
48	HL_1Q81_055	1/A/2281:2289	homologous HL_4V9F_055	NA HL_46891.3*
49	HL_1Q81_056	1/A/2298:2310	homologous HL_4V9F_056	NA HL_19870.5*
50	HL_1Q81_058	1/A/2358:2365	homologous HL_4V9F_058	NA HL_46142.8*
51	HL_1Q81_059	1/A/2389:2399	homologous HL_4V9F_059	NA HL_72419.1*
52	HL_1Q81_060	1/A/2411:2416	GNRA homologous HL_4V9F_060	NA HL_43074.18*
53	HL_1Q81_061	1/A/2442:2450	homologous HL_4V9F_061	NA HL_46142.8*
54	HL_1Q81_062	1/A/2506:2514	homologous HL_4V9F_062	NA HL_36421.5*
55	HL_1Q81_063	1/A/2563:2570	homologous HL_4V9F_063	NA HL_92681.5*
56	HL_1Q81_064	1/A/2585:2593	NA	NA
57	HL_1Q81_065	1/A/2629:2634	GNRA homologous HL_4V9F_065	NA HL_43074.18*
58	HL_1Q81_066	1/A/2695:2700	GNRA homologous HL_4V9F_066	NA HL_43074.18*
59	HL_1Q81_067	1/A/2737:2742	Ribsomal LSU H95 homologous HL_4V9F_067	NA HL_67719.1*
60	HL_1Q81_068	1/A/2780:2794	homologous HL_4V9F_068	NA HL_56677.5*
61	HL_1Q81_069	1/A/2836:2844	homologous HL_4V9F_069	NA HL_05018.6*
62	HL_1Q81_070	1/A/2876:2881	GNRA homologous HL_4V9F_070	NA HL_43074.18*
63	HL_1Q81_071	1/B/3037:3043	NA	NA
64	HL_1Q81_072	1/B/3089:3094	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	HL_1Q81_004	missing nts	NA
2	HL_1Q81_021	missing nts	homologous HL_4V9F_021
3	HL_1Q81_027	missing nts	NA
4	HL_1Q81_030	all high RSRZ	homologous HL_4V9F_030
5	HL_1Q81_038	missing nts	homologous HL_4V9F_038
6	HL_1Q81_050	missing nts	geometric HL_4V9F_011
7	HL_1Q81_053	missing nts	NA
8	HL_1Q81_057	missing nts	NA

Valid loops

#	loop id	location	annotation (mapped to, source)	motif group (similar to)
1	IL_1Q81_001	1/A/21:27, 1/A/516:522	Triple sheared with non-canonical cWW homologous IL_4V9F_001	NA IL_66414.5*
2	IL_1Q81_002	1/A/33:34, 1/A/448:450	Single bulged A homologous IL_4V9F_002	NA IL_80007.16*
3	IL_1Q81_003	1/A/39:41, 1/A/440:443	Major groove platform with extra cWW homologous IL_4V9F_003	NA IL_95485.6*
4	IL_1Q81_004	1/A/77:81, 1/A/93:100	Kink-turn homologous IL_4V9F_004	NA IL_29549.9*
5	IL_1Q81_005	1/A/153:154, 1/A/182:184	Single stack bend homologous IL_4V9F_005	NA IL_04038.4*
6	IL_1Q81_006	1/A/158:164, 1/A/171:178	8x7 Sarcin-Ricin; G-bulge geometric IL_4V9F_006	NA IL_04346.5*
7	IL_1Q81_007	1/A/210:216, 1/A/224:229	7x6 Sarcin-Ricin; G-bulge homologous IL_4V9F_007	NA IL_35110.5*
8	IL_1Q81_008	1/A/245:248, 1/A/265:266	Major groove platform; stack outside cWW homologous IL_4V9F_008	NA IL_70995.6*
9	IL_1Q81_009	1/A/248:249, 1/A/260:265	geometric IL_4V9F_009	NA IL_19724.1*
10	IL_1Q81_010	1/A/274:275, 1/A/374:376	Single bulged G homologous IL_4V9F_010	NA IL_59137.10*
11	IL_1Q81_011	1/A/280:287, 1/A/365:369	NA	NA
12	IL_1Q81_012	1/A/287:290, 1/A/362:365	Tandem non-canonical cWW pairs geometric IL_6CZR_168	NA IL_85877.10*
13	IL_1Q81_013	1/A/290:296, 1/A/355:362	8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge homologous IL_4V9F_012	NA IL_59724.1*
14	IL_1Q81_014	1/A/307:309, 1/A/322:323	Single bulged U homologous IL_4V9F_013	NA IL_83039.11*
15	IL_1Q81_015	1/A/487:491, 1/A/501:515	homologous IL_4V9F_014	NA IL_31504.1*
16	IL_1Q81_016	1/A/548:553, 1/A/606:608	homologous IL_4V9F_015	NA IL_02413.1*
17	IL_1Q81_017	1/A/554:555, 1/A/602:605	homologous IL_4V9F_016	NA IL_55658.1*
18	IL_1Q81_018	1/A/558:561, 1/A/596:599	Tandem non-canonical cWW pairs geometric IL_4K27_001	NA IL_85877.10*
19	IL_1Q81_019	1/A/562:567, 1/A/591:595	Triple sheared related geometric IL_4V9F_018	NA IL_64879.1*
20	IL_1Q81_020	1/A/567:572, 1/A/585:591	7x6 Sarcin-Ricin; G-bulge homologous IL_4V9F_019	NA IL_35110.5*
21	IL_1Q81_021	1/A/663:667, 1/A/679:683	AAA cross-strand stack homologous IL_4V9F_020	NA IL_56467.6*
22	IL_1Q81_022	1/A/699:702, 1/A/726:727	Multiple bulged bases homologous IL_4V9F_021	NA IL_13730.12*
23	IL_1Q81_023	1/A/705:709, 1/A/719:723	tSH-tHW-tHS homologous IL_4V9F_022	NA IL_39521.5*
24	IL_1Q81_024	1/A/763:765, 1/A/899:901	homologous IL_4V9F_023	NA IL_01312.13*
25	IL_1Q81_025	1/A/765:769, 1/A/892:899	tHW-tHW cross-strand stack geometric IL_4V9F_024	NA IL_17470.5*
26	IL_1Q81_026	1/A/788:789, 1/A/856:858	Single bulged A homologous IL_4V9F_025	NA IL_80007.16*
27	IL_1Q81_027	1/A/793:794, 1/A/819:821	Single bulged G homologous IL_4V9F_026	NA IL_59137.10*
28	IL_1Q81_028	1/A/794:798, 1/A/815:819	Triple sheared geometric IL_4V9F_027	NA IL_56467.6*
29	IL_1Q81_029	1/A/830:833, 1/A/849:851	Major groove platform with extra cWW homologous IL_4V9F_028	NA IL_95485.6*
30	IL_1Q81_030	1/A/834:836, 1/A/847:848	Single bulged U homologous IL_4V9F_029	NA IL_83039.11*
31	IL_1Q81_031	1/A/868:870, 1/A/880:884	Multiple bulged bases homologous IL_4V9F_030	NA IL_90991.5*
32	IL_1Q81_032	1/A/936:940, 1/A/1026:1034	Kink-turn homologous IL_4V9F_031	NA IL_29549.9*
33	IL_1Q81_033	1/A/942:944, 1/A/1023:1024	Single bulged A homologous IL_4V9F_032	NA IL_06437.11*
34	IL_1Q81_034	1/A/952:956, 1/A/1011:1015	5x5 Sarcin-Ricin with intercalated A; G-bulge geometric IL_4V9F_033	NA IL_83354.1*
35	IL_1Q81_035	1/A/956:957, 1/A/1009:1011	Minor groove platform homologous IL_4V9F_034	NA IL_06437.11*
36	IL_1Q81_036	1/A/958:964, 1/A/1004:1008	homologous IL_4V9F_035	NA IL_21121.1*
37	IL_1Q81_037	1/A/965:968, 1/A/1000:1003	homologous IL_4V9F_036	NA IL_21570.1*
38	IL_1Q81_038	1/A/1095:1099, 1/A/1257:1261	UAA/GAN homologous IL_4V9F_037	NA IL_53523.5*
39	IL_1Q81_039	1/A/1101:1108, 1/A/1254:1255	SSU/LSU pseudoknot geometric IL_4V9F_038	NA IL_15861.6*
40	IL_1Q81_040	1/A/1108:1110, 1/A/1253:1254	Single bulged U homologous IL_4V9F_039	NA IL_83039.11*
41	IL_1Q81_041	1/A/1115:1121, 1/A/1243:1248	homologous IL_4V9F_040	NA IL_57188.3*
42	IL_1Q81_042	1/A/1136:1138, 1/A/1225:1226	Single bulged G homologous IL_4V9F_041	NA IL_85053.1*
43	IL_1Q81_043	1/A/1147:1155, 1/A/1212:1216	Kink-turn homologous IL_4V9F_042	NA IL_90538.3*
44	IL_1Q81_044	1/A/1163:1167, 1/A/1179:1183	homologous IL_4V9F_043	NA IL_30542.1*
45	IL_1Q81_045	1/A/1269:1270, 1/A/1286:1289	homologous IL_4V9F_045	NA IL_12418.1*
46	IL_1Q81_046	1/A/1301:1303, 1/A/1351:1354	Isolated cWS basepair homologous IL_4V9F_046	NA IL_67621.5*
47	IL_1Q81_047	1/A/1303:1305, 1/A/1349:1351	geometric IL_4V9F_047	NA IL_01312.13*
48	IL_1Q81_048	1/A/1312:1319, 1/A/1338:1342	Kink-turn homologous IL_4V9F_048	NA IL_29549.9*
49	IL_1Q81_049	1/A/1367:1373, 1/A/2052:2057	7x6 Sarcin-Ricin; G-bulge homologous IL_4V9F_049	NA IL_35110.5*
50	IL_1Q81_050	1/A/1416:1419, 1/A/1678:1679	Major groove platform; stack outside cWW homologous IL_4V9F_050	NA IL_70995.6*
51	IL_1Q81_051	1/A/1425:1429, 1/A/1437:1439	C-loop homologous IL_4V9F_051	NA IL_63596.4*
52	IL_1Q81_052	1/A/1456:1460, 1/A/1483:1489	UAA/GAN homologous IL_4V9F_052	NA IL_53523.5*
53	IL_1Q81_053	1/A/1465:1467, 1/A/1475:1478	homologous IL_4V9F_053	NA IL_87332.1*
54	IL_1Q81_054	1/A/1521:1529, 1/A/1662:1665	homologous IL_4V9F_054	NA IL_69457.1*
55	IL_1Q81_055	1/A/1542:1546, 1/A/1639:1643	tSH-tHW-tHS homologous IL_4V9F_055	NA IL_39521.5*
56	IL_1Q81_056	1/A/1570:1574, 1/A/1622:1627	tSH-tHH-tHS homologous IL_4V9F_056	NA IL_62654.1*
57	IL_1Q81_057	1/A/1578:1583, 1/A/1612:1618	homologous IL_4V9F_057	NA IL_66497.1*
58	IL_1Q81_058	1/A/1587:1592, 1/A/1602:1608	Kink-turn homologous IL_4V9F_058	NA IL_16456.1*
59	IL_1Q81_059	1/A/1728:1734, 1/A/2045:2047	homologous IL_4V9F_059	NA IL_12566.2*
60	IL_1Q81_060	1/A/1741:1743, 1/A/2036:2038	Isolated tWW turn homologous IL_4V9F_060	NA IL_54997.5*
61	IL_1Q81_061	1/A/1744:1747, 1/A/2034:2035	Major groove platform; stack outside cWW geometric IL_4V9F_061	NA IL_70995.6*
62	IL_1Q81_062	1/A/1747:1752, 1/A/2031:2034	Intercalated tWH homologous IL_4V9F_062	NA IL_01312.13*
63	IL_1Q81_063	1/A/1764:1769, 1/A/1774:1780	tSH-tSH-tHH-tHS homologous IL_4V9F_063	NA IL_66584.5*
64	IL_1Q81_064	1/A/1826:1827, 1/A/2021:2023	Single bulged A homologous IL_4V9F_064	NA IL_80007.16*
65	IL_1Q81_065	1/A/1854:1860, 1/A/1869:1877	Kink-turn related homologous IL_4V9F_065	NA IL_17069.3*
66	IL_1Q81_066	1/A/1893:1896, 1/A/1943:1944	Major groove outside cWW, minor groove, intercalation pocket homologous IL_4V9F_066	NA IL_31836.1*
67	IL_1Q81_067	1/A/1897:1898, 1/A/1939:1942	Major groove outside cWW, minor groove, intercalation pocket homologous IL_4V9F_067	NA IL_13730.12*
68	IL_1Q81_068	1/A/1902:1905, 1/A/1934:1935	Major groove minor groove platform; mini C-loop homologous IL_4V9F_068	NA IL_09061.4*
69	IL_1Q81_069	1/A/1907:1913, 1/A/1926:1932	homologous IL_4V9F_069	NA IL_36973.5*
70	IL_1Q81_070	1/A/1974:1975, 1/A/2005:2008	geometric IL_4V9F_070	NA IL_69632.1*
71	IL_1Q81_071	1/A/1975:1986, 1/A/2002:2005	homologous IL_4V9F_071	NA IL_70285.1*
72	IL_1Q81_072	1/A/2090:2093, 1/A/2652:2654	homologous IL_4V9F_072	NA IL_23663.4*
73	IL_1Q81_073	1/A/2095:2097, 1/A/2647:2650	homologous IL_4V9F_073	NA IL_54678.3*
74	IL_1Q81_074	1/A/2108:2110, 1/A/2477:2478	Single bulged U homologous IL_4V9F_074	NA IL_83039.11*
75	IL_1Q81_075	1/A/2111:2112, 1/A/2473:2476	Minor groove platform homologous IL_4V9F_075	NA IL_06437.11*
76	IL_1Q81_076	1/A/2122:2124, 1/A/2269:2272	Isolated tHS basepair with bulges homologous IL_4V9F_076	NA IL_38958.6*
77	IL_1Q81_077	1/A/2279:2280, 1/A/2290:2292	Single bulged A homologous IL_4V9F_079	NA IL_80007.16*
78	IL_1Q81_078	1/A/2331:2333, 1/A/2351:2355	Isolated tHS basepair with bulges geometric IL_4V9F_080	NA IL_38958.6*
79	IL_1Q81_079	1/A/2436:2438, 1/A/2454:2455	Single stack bend homologous IL_4V9F_081	NA IL_04038.4*
80	IL_1Q81_080	1/A/2489:2490, 1/A/2531:2533	Major groove platform homologous IL_4V9F_082	NA IL_80663.10*
81	IL_1Q81_081	1/A/2492:2494, 1/A/2528:2529	Major groove platform homologous IL_4V9F_083	NA IL_95601.1*
82	IL_1Q81_082	1/A/2494:2496, 1/A/2524:2528	Major groove minor groove platform with extra cWW geometric IL_4V9F_084	NA IL_96042.4*
83	IL_1Q81_083	1/A/2501:2505, 1/A/2515:2519	Triple sheared homologous IL_4V9F_085	NA IL_56467.6*
84	IL_1Q81_084	1/A/2542:2543, 1/A/2615:2617	Major groove platform homologous IL_4V9F_086	NA IL_02060.4*
85	IL_1Q81_085	1/A/2545:2547, 1/A/2609:2613	Isolated non-canonical cWW with bulges homologous IL_4V9F_087	NA IL_55456.1*
86	IL_1Q81_086	1/A/2547:2548, 1/A/2606:2609	Multiple bulged bases geometric IL_4V9F_088	NA IL_13730.12*
87	IL_1Q81_087	1/A/2557:2558, 1/A/2575:2578	Minor groove platform with intercalation homologous IL_4V9F_089	NA IL_95601.1*
88	IL_1Q81_088	1/A/2626:2627, 1/A/2636:2638	Single bulged A geometric IL_5TBW_013	NA IL_80007.16*
89	IL_1Q81_089	1/A/2672:2676, 1/A/2809:2817	tSH-tHS-tHW geometric IL_4WF9_099	NA IL_34907.2*
90	IL_1Q81_090	1/A/2689:2695, 1/A/2700:2705	Sarcin-Ricin target in LSU H95; G-bulge geometric IL_4V9F_092	NA IL_35110.5*
91	IL_1Q81_091	1/A/2717:2721, 1/A/2761:2763	C-loop homologous IL_4V9F_093	NA IL_63596.4*
92	IL_1Q81_092	1/A/2724:2728, 1/A/2754:2758	UAA/GAN homologous IL_4V9F_094	NA IL_53523.5*
93	IL_1Q81_093	1/A/2732:2733, 1/A/2746:2750	homologous IL_4V9F_095	NA IL_75330.1*
94	IL_1Q81_094	1/A/2772:2777, 1/A/2797:2802	UAA/GAN with extra cWW geometric IL_5J7L_350	NA IL_49767.4*
95	IL_1Q81_095	1/A/2855:2857, 1/A/2900:2903	Isolated non-canonical cWW with bulges homologous IL_4V9F_097	NA IL_01312.13*
96	IL_1Q81_096	1/A/2860:2861, 1/A/2895:2897	Single bulged A homologous IL_4V9F_098	NA IL_80007.16*
97	IL_1Q81_097	1/A/2864:2869, 1/A/2888:2892	homologous IL_4V9F_099	NA IL_83162.3*
98	IL_1Q81_098	1/A/2873:2876, 1/A/2881:2884	Double sheared geometric IL_4V9F_100	NA IL_09705.7*
99	IL_1Q81_099	1/B/3015:3016, 1/B/3064:3066	NA	NA
100	IL_1Q81_100	1/B/3021:3028, 1/B/3054:3059	NA	NA
101	IL_1Q81_101	1/B/3029:3030, 1/B/3050:3053	NA	NA
102	IL_1Q81_102	1/B/3033:3037, 1/B/3043:3047	NA	NA
103	IL_1Q81_103	1/B/3075:3081, 1/B/3101:3106	NA	NA
104	IL_1Q81_104	1/B/3086:3088, 1/B/3095:3096	NA	NA

Problematic loops

No problematic loops

Valid loops

#	loop id	location	annotation (mapped to, source)	motif group (similar to)
1	J3_1Q81_001	1/A/240:244, 1/A/267:273, 1/A/377:379	homologous J3_4V9F_001	NA
2	J3_1Q81_002	1/A/774:780, 1/A/866:868, 1/A/884:887	NA	NA
3	J3_1Q81_003	1/A/789:791, 1/A/823:828, 1/A/853:856	NA	NA
4	J3_1Q81_004	1/A/1159:1161, 1/A/1185:1194, 1/A/1205:1208	NA	NA
5	J3_1Q81_005	1/A/1404:1409, 1/A/1700:1703, 1/A/1715:1718	homologous J3_4V9F_005	NA
6	J3_1Q81_006	1/A/1412:1415, 1/A/1680:1686, 1/A/1695:1697	homologous J3_4V9F_006	NA
7	J3_1Q81_007	1/A/2131:2134, 1/A/2241:2245, 1/A/2256:2262	homologous J3_4V9F_007	NA
8	J3_1Q81_008	1/A/2329:2331, 1/A/2355:2357, 1/A/2366:2371	homologous J3_4V9F_008	NA
9	J3_1Q81_009	1/A/2552:2555, 1/A/2580:2583, 1/A/2595:2602	homologous J3_4V9F_009	NA
10	J3_1Q81_010	1/B/3009:3014, 1/B/3067:3071, 1/B/3110:3114	NA	NA

Problematic loops

No problematic loops

Coloring options: Nucleotide numbers

1Q81 Internal, Hairpin and 3-way Junction Loop Motifs

Valid loops

Problematic loops

Valid loops

Problematic loops

Valid loops

Problematic loops