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1Q81 Internal, Hairpin and 3-way Junction Loop Motifs

Download loops

Valid loops

#loop idlocationannotationmotif
1➜1/A/55:64NANA
2➜1/A/83:91NANA
3➜1/A/118:122NANA
4➜1/A/136:142NANA
5➜1/A/164:171NANA
6➜1/A/195:201NANA
7➜1/A/217:223NANA
8➜1/A/252:257NANA
9➜1/A/312:319NANA
10➜1/A/326:330NANA
11➜1/A/334:342NANA
12➜1/A/390:399NANA
13➜1/A/416:424NANA
14➜1/A/468:473NANA
15➜1/A/493:499NANA
16➜1/A/576:581NANA
17➜1/A/623:632NANA
18➜1/A/670:676NANA
19➜1/A/690:695NANA
20➜1/A/733:738NANA
21➜1/A/804:809NANA
22➜1/A/837:846NANA
23➜1/A/872:878NANA
24➜1/A/919:924NANA
25➜1/A/1054:1060NANA
26➜1/A/1076:1083NANA
27➜1/A/1196:1203NANA
28➜1/A/1274:1282NANA
29➜1/A/1326:1331NANA
30➜1/A/1387:1395NANA
31➜1/A/1430:1436NANA
32➜1/A/1468:1474NANA
33➜1/A/1498:1507NANA
34➜1/A/1594:1600NANA
35➜1/A/1628:1633NANA
36➜1/A/1651:1655NANA
37➜1/A/1687:1694NANA
38➜1/A/1705:1713NANA
39➜1/A/1769:1774NANA
40➜1/A/1793:1799NANA
41➜1/A/1808:1812NANA
42➜1/A/1833:1843NANA
43➜1/A/1862:1867NANA
44➜1/A/1916:1923NANA
45➜1/A/1990:1998NANA
46➜1/A/2068:2077NANA
47➜1/A/2248:2253NANA
48➜1/A/2281:2289NANA
49➜1/A/2298:2310NANA
50➜1/A/2358:2365NANA
51➜1/A/2389:2399NANA
52➜1/A/2411:2416NANA
53➜1/A/2442:2450NANA
54➜1/A/2506:2514NANA
55➜1/A/2563:2570NANA
56➜1/A/2585:2593NANA
57➜1/A/2629:2634NANA
58➜1/A/2695:2700NANA
59➜1/A/2737:2742NANA
60➜1/A/2780:2794NANA
61➜1/A/2836:2844NANA
62➜1/A/2876:2881NANA
63➜1/B/3037:3043NANA
64➜1/B/3089:3094NANA

Problematic loops

#loop idProblemSequence
1➜NA
2➜NA
3➜NA
4➜NA
5➜NA
6➜NA
7➜NA
8➜NA

Valid loops

#loop idlocationannotationmotif
1➜1/A/21:27,1/A/516:522NANA
2➜1/A/33:34,1/A/448:450NANA
3➜1/A/39:41,1/A/440:443NANA
4➜1/A/77:81,1/A/93:100NANA
5➜1/A/153:154,1/A/182:184NANA
6➜1/A/158:164,1/A/171:178NANA
7➜1/A/210:216,1/A/224:229NANA
8➜1/A/245:248,1/A/265:266NANA
9➜1/A/248:249,1/A/260:265NANA
10➜1/A/274:275,1/A/374:376NANA
11➜1/A/280:287,1/A/365:369NANA
12➜1/A/287:290,1/A/362:365NANA
13➜1/A/290:296,1/A/355:362NANA
14➜1/A/307:309,1/A/322:323NANA
15➜1/A/487:491,1/A/501:515NANA
16➜1/A/548:553,1/A/606:608NANA
17➜1/A/554:555,1/A/602:605NANA
18➜1/A/558:561,1/A/596:599NANA
19➜1/A/562:567,1/A/591:595NANA
20➜1/A/567:572,1/A/585:591NANA
21➜1/A/663:667,1/A/679:683NANA
22➜1/A/699:702,1/A/726:727NANA
23➜1/A/705:709,1/A/719:723NANA
24➜1/A/763:765,1/A/899:901NANA
25➜1/A/765:769,1/A/892:899NANA
26➜1/A/788:789,1/A/856:858NANA
27➜1/A/793:794,1/A/819:821NANA
28➜1/A/794:798,1/A/815:819NANA
29➜1/A/830:833,1/A/849:851NANA
30➜1/A/834:836,1/A/847:848NANA
31➜1/A/868:870,1/A/880:884NANA
32➜1/A/936:940,1/A/1026:1034NANA
33➜1/A/942:944,1/A/1023:1024NANA
34➜1/A/952:956,1/A/1011:1015NANA
35➜1/A/956:957,1/A/1009:1011NANA
36➜1/A/958:964,1/A/1004:1008NANA
37➜1/A/965:968,1/A/1000:1003NANA
38➜1/A/1095:1099,1/A/1257:1261NANA
39➜1/A/1101:1108,1/A/1254:1255NANA
40➜1/A/1108:1110,1/A/1253:1254NANA
41➜1/A/1115:1121,1/A/1243:1248NANA
42➜1/A/1136:1138,1/A/1225:1226NANA
43➜1/A/1147:1155,1/A/1212:1216NANA
44➜1/A/1163:1167,1/A/1179:1183NANA
45➜1/A/1269:1270,1/A/1286:1289NANA
46➜1/A/1301:1303,1/A/1351:1354NANA
47➜1/A/1303:1305,1/A/1349:1351NANA
48➜1/A/1312:1319,1/A/1338:1342NANA
49➜1/A/1367:1373,1/A/2052:2057NANA
50➜1/A/1416:1419,1/A/1678:1679NANA
51➜1/A/1425:1429,1/A/1437:1439NANA
52➜1/A/1456:1460,1/A/1483:1489NANA
53➜1/A/1465:1467,1/A/1475:1478NANA
54➜1/A/1521:1529,1/A/1662:1665NANA
55➜1/A/1542:1546,1/A/1639:1643NANA
56➜1/A/1570:1574,1/A/1622:1627NANA
57➜1/A/1578:1583,1/A/1612:1618NANA
58➜1/A/1587:1592,1/A/1602:1608NANA
59➜1/A/1728:1734,1/A/2045:2047NANA
60➜1/A/1741:1743,1/A/2036:2038NANA
61➜1/A/1744:1747,1/A/2034:2035NANA
62➜1/A/1747:1752,1/A/2031:2034NANA
63➜1/A/1764:1769,1/A/1774:1780NANA
64➜1/A/1826:1827,1/A/2021:2023NANA
65➜1/A/1854:1860,1/A/1869:1877NANA
66➜1/A/1893:1896,1/A/1943:1944NANA
67➜1/A/1897:1898,1/A/1939:1942NANA
68➜1/A/1902:1905,1/A/1934:1935NANA
69➜1/A/1907:1913,1/A/1926:1932NANA
70➜1/A/1974:1975,1/A/2005:2008NANA
71➜1/A/1975:1986,1/A/2002:2005NANA
72➜1/A/2090:2093,1/A/2652:2654NANA
73➜1/A/2095:2097,1/A/2647:2650NANA
74➜1/A/2108:2110,1/A/2477:2478NANA
75➜1/A/2111:2112,1/A/2473:2476NANA
76➜1/A/2122:2124,1/A/2269:2272NANA
77➜1/A/2279:2280,1/A/2290:2292NANA
78➜1/A/2331:2333,1/A/2351:2355NANA
79➜1/A/2436:2438,1/A/2454:2455NANA
80➜1/A/2489:2490,1/A/2531:2533NANA
81➜1/A/2492:2494,1/A/2528:2529NANA
82➜1/A/2494:2496,1/A/2524:2528NANA
83➜1/A/2501:2505,1/A/2515:2519NANA
84➜1/A/2542:2543,1/A/2615:2617NANA
85➜1/A/2545:2547,1/A/2609:2613NANA
86➜1/A/2547:2548,1/A/2606:2609NANA
87➜1/A/2557:2558,1/A/2575:2578NANA
88➜1/A/2626:2627,1/A/2636:2638NANA
89➜1/A/2672:2676,1/A/2809:2817NANA
90➜1/A/2689:2695,1/A/2700:2705NANA
91➜1/A/2717:2721,1/A/2761:2763NANA
92➜1/A/2724:2728,1/A/2754:2758NANA
93➜1/A/2732:2733,1/A/2746:2750NANA
94➜1/A/2772:2777,1/A/2797:2802NANA
95➜1/A/2855:2857,1/A/2900:2903NANA
96➜1/A/2860:2861,1/A/2895:2897NANA
97➜1/A/2864:2869,1/A/2888:2892NANA
98➜1/A/2873:2876,1/A/2881:2884NANA
99➜1/B/3015:3016,1/B/3064:3066NANA
100➜1/B/3021:3028,1/B/3054:3059NANA
101➜1/B/3029:3030,1/B/3050:3053NANA
102➜1/B/3033:3037,1/B/3043:3047NANA
103➜1/B/3075:3081,1/B/3101:3106NANA
104➜1/B/3086:3088,1/B/3095:3096NANA

Problematic loops

No problematic loops

Valid loops

#loop idlocationannotationmotif
1➜1/A/240:244,1/A/267:273,1/A/377:379NANA
2➜1/A/774:780,1/A/866:868,1/A/884:887NANA
3➜1/A/789:791,1/A/823:828,1/A/853:856NANA
4➜1/A/1159:1161,1/A/1185:1194,1/A/1205:1208NANA
5➜1/A/1404:1409,1/A/1700:1703,1/A/1715:1718NANA
6➜1/A/1412:1415,1/A/1680:1686,1/A/1695:1697NANA
7➜1/A/2131:2134,1/A/2241:2245,1/A/2256:2262NANA
8➜1/A/2329:2331,1/A/2355:2357,1/A/2366:2371NANA
9➜1/A/2552:2555,1/A/2580:2583,1/A/2595:2602NANA
10➜1/B/3009:3014,1/B/3067:3071,1/B/3110:3114NANA

Problematic loops

No problematic loops


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