Valid loops

#loop idlocationannotation
(mapped to, source)
motif group
(similar to)
1/A/55:64
homologous
HL_4V9F_001
NA

HL_55136.1*
1/A/83:91
homologous
HL_4V9F_002
NA

HL_44769.1*
1/A/118:122
homologous
HL_4V9F_003
NA

HL_94352.4*
1/A/136:142
homologous
HL_4V9F_005
NA

HL_79299.11*
1/A/164:171
homologous
HL_4V9F_006
NA

HL_23481.5*
1/A/195:201
homologous
HL_4V9F_007
NA

HL_12053.1*
1/A/217:223
homologous
HL_4V9F_008
NA

HL_67216.5*
1/A/252:257GNRA
homologous
HL_4V9F_009
NA

HL_43074.18*
1/A/312:319T-loop with 1 bulged base
homologous
HL_4V9F_010
NA

HL_68493.6*
1/A/326:330
homologous
HL_4V9F_011
NA

HL_98557.5*
1/A/334:342
homologous
HL_4V9F_012
NA

HL_08002.6*
1/A/390:399
homologous
HL_4V9F_013
NA

HL_10536.1*
1/A/416:424
homologous
HL_4V9F_014
NA

HL_46142.8*
1/A/468:473GNRA
homologous
HL_4V9F_015
NA

HL_43074.18*
1/A/493:499GNRA with one bulged base
homologous
HL_4V9F_016
NA

HL_02361.6*
1/A/576:581GNRA
homologous
HL_4V9F_017
NA

HL_43074.18*
1/A/623:632
geometric
HL_7RQB_018
NA

HL_33239.17*
1/A/670:676
homologous
HL_4V9F_019
NA

HL_37407.2*
1/A/690:695GNRA
homologous
HL_4V9F_020
NA

HL_43074.18*
1/A/733:738Other HL
homologous
HL_4V9F_022
NA

HL_43074.18*
1/A/804:809GNRA
homologous
HL_4V9F_023
NA

HL_43074.18*
1/A/837:846
homologous
HL_4V9F_024
NA

HL_39334.5*
1/A/872:878
homologous
HL_4V9F_025
NA

HL_16898.3*
1/A/919:924
homologous
HL_4V9F_026
NA

HL_15942.5*
1/A/1054:1060GNRA
homologous
HL_4V9F_028
NA

HL_43074.18*
1/A/1076:1083
homologous
HL_4V9F_029
NA

HL_72451.5*
1/A/1196:1203
homologous
HL_4V9F_031
NA
1/A/1274:1282
homologous
HL_4V9F_032
NA

HL_82851.1*
1/A/1326:1331GNRA
homologous
HL_4V9F_033
NA

HL_43074.18*
1/A/1387:1395T-loop with 2 stacked bulged bases
homologous
HL_4V9F_034
NA

HL_33239.17*
1/A/1430:1436
homologous
HL_4V9F_035
NA

HL_86880.5*
1/A/1468:1474GNRA
homologous
HL_4V9F_036
NA

HL_43074.18*
1/A/1498:1507
homologous
HL_4V9F_037
NA

HL_78457.4*
1/A/1594:1600Other HL
homologous
HL_4V9F_039
NA

HL_68493.6*
1/A/1628:1633GNRA
homologous
HL_4V9F_040
NA

HL_43074.18*
1/A/1651:1655
homologous
HL_4V9F_041
NA

HL_69353.7*
1/A/1687:1694
homologous
HL_4V9F_042
NA

HL_66171.3*
1/A/1705:1713
homologous
HL_4V9F_043
NA

HL_21000.1*
1/A/1769:1774UNCG
geometric
HL_4V9F_044
NA

HL_79299.11*
1/A/1793:1799GNRA
homologous
HL_4V9F_045
NA

HL_43074.18*
1/A/1808:1812
homologous
HL_4V9F_046
NA

HL_79272.3*
1/A/1833:1843
homologous
HL_4V9F_047
NA

HL_43613.4*
1/A/1862:1867GNRA
homologous
HL_4V9F_048
NA

HL_43074.18*
1/A/1916:1923
homologous
HL_4V9F_049
NA

HL_53760.4*
1/A/1990:1998
homologous
HL_4V9F_051
NA

HL_53760.4*
1/A/2068:2077
homologous
HL_4V9F_052
NA

HL_90642.5*
1/A/2248:2253GNRA
homologous
HL_4V9F_054
NA

HL_43074.18*
1/A/2281:2289
homologous
HL_4V9F_055
NA

HL_46891.3*
1/A/2298:2310
homologous
HL_4V9F_056
NA

HL_19870.5*
1/A/2358:2365
homologous
HL_4V9F_058
NA

HL_46142.8*
1/A/2389:2399
homologous
HL_4V9F_059
NA

HL_72419.1*
1/A/2411:2416GNRA
homologous
HL_4V9F_060
NA

HL_43074.18*
1/A/2442:2450
homologous
HL_4V9F_061
NA

HL_46142.8*
1/A/2506:2514
homologous
HL_4V9F_062
NA

HL_36421.5*
1/A/2563:2570
homologous
HL_4V9F_063
NA

HL_92681.5*
1/A/2585:2593NANA
1/A/2629:2634GNRA
homologous
HL_4V9F_065
NA

HL_43074.18*
1/A/2695:2700GNRA
homologous
HL_4V9F_066
NA

HL_43074.18*
1/A/2737:2742Ribsomal LSU H95
homologous
HL_4V9F_067
NA

HL_67719.1*
1/A/2780:2794
homologous
HL_4V9F_068
NA

HL_56677.5*
1/A/2836:2844
homologous
HL_4V9F_069
NA

HL_05018.6*
1/A/2876:2881GNRA
homologous
HL_4V9F_070
NA

HL_43074.18*
1/B/3037:3043NANA
1/B/3089:3094NANA

Problematic loops

#loop idProblemSequence
HL_1Q81_004NA
HL_1Q81_021
homologous
HL_4V9F_021
HL_1Q81_027NA
HL_1Q81_030
homologous
HL_4V9F_030
HL_1Q81_038
homologous
HL_4V9F_038
HL_1Q81_050
geometric
HL_4V9F_011
HL_1Q81_053NA
HL_1Q81_057NA

Valid loops

#loop idlocationannotation
(mapped to, source)
motif group
(similar to)
1/A/21:27,
1/A/516:522
Triple sheared with non-canonical cWW
homologous
IL_4V9F_001
NA

IL_66414.5*
1/A/33:34,
1/A/448:450
Single bulged A
homologous
IL_4V9F_002
NA

IL_80007.16*
1/A/39:41,
1/A/440:443
Major groove platform with extra cWW
homologous
IL_4V9F_003
NA

IL_95485.6*
1/A/77:81,
1/A/93:100
Kink-turn
homologous
IL_4V9F_004
NA

IL_29549.9*
1/A/153:154,
1/A/182:184
Single stack bend
homologous
IL_4V9F_005
NA

IL_04038.4*
1/A/158:164,
1/A/171:178
8x7 Sarcin-Ricin; G-bulge
geometric
IL_4V9F_006
NA

IL_04346.5*
1/A/210:216,
1/A/224:229
7x6 Sarcin-Ricin; G-bulge
homologous
IL_4V9F_007
NA

IL_35110.5*
1/A/245:248,
1/A/265:266
Major groove platform; stack outside cWW
homologous
IL_4V9F_008
NA

IL_70995.6*
1/A/248:249,
1/A/260:265

geometric
IL_4V9F_009
NA

IL_19724.1*
1/A/274:275,
1/A/374:376
Single bulged G
homologous
IL_4V9F_010
NA

IL_59137.10*
1/A/280:287,
1/A/365:369
NANA
1/A/287:290,
1/A/362:365
Tandem non-canonical cWW pairs
geometric
IL_6CZR_168
NA

IL_85877.10*
1/A/290:296,
1/A/355:362
8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge
homologous
IL_4V9F_012
NA

IL_59724.1*
1/A/307:309,
1/A/322:323
Single bulged U
homologous
IL_4V9F_013
NA

IL_83039.11*
1/A/487:491,
1/A/501:515

homologous
IL_4V9F_014
NA

IL_31504.1*
1/A/548:553,
1/A/606:608

homologous
IL_4V9F_015
NA

IL_02413.1*
1/A/554:555,
1/A/602:605

homologous
IL_4V9F_016
NA

IL_55658.1*
1/A/558:561,
1/A/596:599
Tandem non-canonical cWW pairs
geometric
IL_4K27_001
NA

IL_85877.10*
1/A/562:567,
1/A/591:595
Triple sheared related
geometric
IL_4V9F_018
NA

IL_64879.1*
1/A/567:572,
1/A/585:591
7x6 Sarcin-Ricin; G-bulge
homologous
IL_4V9F_019
NA

IL_35110.5*
1/A/663:667,
1/A/679:683
AAA cross-strand stack
homologous
IL_4V9F_020
NA

IL_56467.6*
1/A/699:702,
1/A/726:727
Multiple bulged bases
homologous
IL_4V9F_021
NA

IL_13730.12*
1/A/705:709,
1/A/719:723
tSH-tHW-tHS
homologous
IL_4V9F_022
NA

IL_39521.5*
1/A/763:765,
1/A/899:901

homologous
IL_4V9F_023
NA

IL_01312.13*
1/A/765:769,
1/A/892:899
tHW-tHW cross-strand stack
geometric
IL_4V9F_024
NA

IL_17470.5*
1/A/788:789,
1/A/856:858
Single bulged A
homologous
IL_4V9F_025
NA

IL_80007.16*
1/A/793:794,
1/A/819:821
Single bulged G
homologous
IL_4V9F_026
NA

IL_59137.10*
1/A/794:798,
1/A/815:819
Triple sheared
geometric
IL_4V9F_027
NA

IL_56467.6*
1/A/830:833,
1/A/849:851
Major groove platform with extra cWW
homologous
IL_4V9F_028
NA

IL_95485.6*
1/A/834:836,
1/A/847:848
Single bulged U
homologous
IL_4V9F_029
NA

IL_83039.11*
1/A/868:870,
1/A/880:884
Multiple bulged bases
homologous
IL_4V9F_030
NA

IL_90991.5*
1/A/936:940,
1/A/1026:1034
Kink-turn
homologous
IL_4V9F_031
NA

IL_29549.9*
1/A/942:944,
1/A/1023:1024
Single bulged A
homologous
IL_4V9F_032
NA

IL_06437.11*
1/A/952:956,
1/A/1011:1015
5x5 Sarcin-Ricin with intercalated A; G-bulge
geometric
IL_4V9F_033
NA

IL_83354.1*
1/A/956:957,
1/A/1009:1011
Minor groove platform
homologous
IL_4V9F_034
NA

IL_06437.11*
1/A/958:964,
1/A/1004:1008

homologous
IL_4V9F_035
NA

IL_21121.1*
1/A/965:968,
1/A/1000:1003

homologous
IL_4V9F_036
NA

IL_21570.1*
1/A/1095:1099,
1/A/1257:1261
UAA/GAN
homologous
IL_4V9F_037
NA

IL_53523.5*
1/A/1101:1108,
1/A/1254:1255
SSU/LSU pseudoknot
geometric
IL_4V9F_038
NA

IL_15861.6*
1/A/1108:1110,
1/A/1253:1254
Single bulged U
homologous
IL_4V9F_039
NA

IL_83039.11*
1/A/1115:1121,
1/A/1243:1248

homologous
IL_4V9F_040
NA

IL_57188.3*
1/A/1136:1138,
1/A/1225:1226
Single bulged G
homologous
IL_4V9F_041
NA

IL_85053.1*
1/A/1147:1155,
1/A/1212:1216
Kink-turn
homologous
IL_4V9F_042
NA

IL_90538.3*
1/A/1163:1167,
1/A/1179:1183

homologous
IL_4V9F_043
NA

IL_30542.1*
1/A/1269:1270,
1/A/1286:1289

homologous
IL_4V9F_045
NA

IL_12418.1*
1/A/1301:1303,
1/A/1351:1354
Isolated cWS basepair
homologous
IL_4V9F_046
NA

IL_67621.5*
1/A/1303:1305,
1/A/1349:1351

geometric
IL_4V9F_047
NA

IL_01312.13*
1/A/1312:1319,
1/A/1338:1342
Kink-turn
homologous
IL_4V9F_048
NA

IL_29549.9*
1/A/1367:1373,
1/A/2052:2057
7x6 Sarcin-Ricin; G-bulge
homologous
IL_4V9F_049
NA

IL_35110.5*
1/A/1416:1419,
1/A/1678:1679
Major groove platform; stack outside cWW
homologous
IL_4V9F_050
NA

IL_70995.6*
1/A/1425:1429,
1/A/1437:1439
C-loop
homologous
IL_4V9F_051
NA

IL_63596.4*
1/A/1456:1460,
1/A/1483:1489
UAA/GAN
homologous
IL_4V9F_052
NA

IL_53523.5*
1/A/1465:1467,
1/A/1475:1478

homologous
IL_4V9F_053
NA

IL_87332.1*
1/A/1521:1529,
1/A/1662:1665

homologous
IL_4V9F_054
NA

IL_69457.1*
1/A/1542:1546,
1/A/1639:1643
tSH-tHW-tHS
homologous
IL_4V9F_055
NA

IL_39521.5*
1/A/1570:1574,
1/A/1622:1627
tSH-tHH-tHS
homologous
IL_4V9F_056
NA

IL_62654.1*
1/A/1578:1583,
1/A/1612:1618

homologous
IL_4V9F_057
NA

IL_66497.1*
1/A/1587:1592,
1/A/1602:1608
Kink-turn
homologous
IL_4V9F_058
NA

IL_16456.1*
1/A/1728:1734,
1/A/2045:2047

homologous
IL_4V9F_059
NA

IL_12566.2*
1/A/1741:1743,
1/A/2036:2038
Isolated tWW turn
homologous
IL_4V9F_060
NA

IL_54997.5*
1/A/1744:1747,
1/A/2034:2035
Major groove platform; stack outside cWW
geometric
IL_4V9F_061
NA

IL_70995.6*
1/A/1747:1752,
1/A/2031:2034
Intercalated tWH
homologous
IL_4V9F_062
NA

IL_01312.13*
1/A/1764:1769,
1/A/1774:1780
tSH-tSH-tHH-tHS
homologous
IL_4V9F_063
NA

IL_66584.5*
1/A/1826:1827,
1/A/2021:2023
Single bulged A
homologous
IL_4V9F_064
NA

IL_80007.16*
1/A/1854:1860,
1/A/1869:1877
Kink-turn related
homologous
IL_4V9F_065
NA

IL_17069.3*
1/A/1893:1896,
1/A/1943:1944
Major groove outside cWW, minor groove, intercalation pocket
homologous
IL_4V9F_066
NA

IL_31836.1*
1/A/1897:1898,
1/A/1939:1942
Major groove outside cWW, minor groove, intercalation pocket
homologous
IL_4V9F_067
NA

IL_13730.12*
1/A/1902:1905,
1/A/1934:1935
Major groove minor groove platform; mini C-loop
homologous
IL_4V9F_068
NA

IL_09061.4*
1/A/1907:1913,
1/A/1926:1932

homologous
IL_4V9F_069
NA

IL_36973.5*
1/A/1974:1975,
1/A/2005:2008

geometric
IL_4V9F_070
NA

IL_69632.1*
1/A/1975:1986,
1/A/2002:2005

homologous
IL_4V9F_071
NA

IL_70285.1*
1/A/2090:2093,
1/A/2652:2654

homologous
IL_4V9F_072
NA

IL_23663.4*
1/A/2095:2097,
1/A/2647:2650

homologous
IL_4V9F_073
NA

IL_54678.3*
1/A/2108:2110,
1/A/2477:2478
Single bulged U
homologous
IL_4V9F_074
NA

IL_83039.11*
1/A/2111:2112,
1/A/2473:2476
Minor groove platform
homologous
IL_4V9F_075
NA

IL_06437.11*
1/A/2122:2124,
1/A/2269:2272
Isolated tHS basepair with bulges
homologous
IL_4V9F_076
NA

IL_38958.6*
1/A/2279:2280,
1/A/2290:2292
Single bulged A
homologous
IL_4V9F_079
NA

IL_80007.16*
1/A/2331:2333,
1/A/2351:2355
Isolated tHS basepair with bulges
geometric
IL_4V9F_080
NA

IL_38958.6*
1/A/2436:2438,
1/A/2454:2455
Single stack bend
homologous
IL_4V9F_081
NA

IL_04038.4*
1/A/2489:2490,
1/A/2531:2533
Major groove platform
homologous
IL_4V9F_082
NA

IL_80663.10*
1/A/2492:2494,
1/A/2528:2529
Major groove platform
homologous
IL_4V9F_083
NA

IL_95601.1*
1/A/2494:2496,
1/A/2524:2528
Major groove minor groove platform with extra cWW
geometric
IL_4V9F_084
NA

IL_96042.4*
1/A/2501:2505,
1/A/2515:2519
Triple sheared
homologous
IL_4V9F_085
NA

IL_56467.6*
1/A/2542:2543,
1/A/2615:2617
Major groove platform
homologous
IL_4V9F_086
NA

IL_02060.4*
1/A/2545:2547,
1/A/2609:2613
Isolated non-canonical cWW with bulges
homologous
IL_4V9F_087
NA

IL_55456.1*
1/A/2547:2548,
1/A/2606:2609
Multiple bulged bases
geometric
IL_4V9F_088
NA

IL_13730.12*
1/A/2557:2558,
1/A/2575:2578
Minor groove platform with intercalation
homologous
IL_4V9F_089
NA

IL_95601.1*
1/A/2626:2627,
1/A/2636:2638
Single bulged A
geometric
IL_5TBW_013
NA

IL_80007.16*
1/A/2672:2676,
1/A/2809:2817
tSH-tHS-tHW
geometric
IL_4WF9_099
NA

IL_34907.2*
1/A/2689:2695,
1/A/2700:2705
Sarcin-Ricin target in LSU H95; G-bulge
geometric
IL_4V9F_092
NA

IL_35110.5*
1/A/2717:2721,
1/A/2761:2763
C-loop
homologous
IL_4V9F_093
NA

IL_63596.4*
1/A/2724:2728,
1/A/2754:2758
UAA/GAN
homologous
IL_4V9F_094
NA

IL_53523.5*
1/A/2732:2733,
1/A/2746:2750

homologous
IL_4V9F_095
NA

IL_75330.1*
1/A/2772:2777,
1/A/2797:2802
UAA/GAN with extra cWW
geometric
IL_5J7L_350
NA

IL_49767.4*
1/A/2855:2857,
1/A/2900:2903
Isolated non-canonical cWW with bulges
homologous
IL_4V9F_097
NA

IL_01312.13*
1/A/2860:2861,
1/A/2895:2897
Single bulged A
homologous
IL_4V9F_098
NA

IL_80007.16*
1/A/2864:2869,
1/A/2888:2892

homologous
IL_4V9F_099
NA

IL_83162.3*
1/A/2873:2876,
1/A/2881:2884
Double sheared
geometric
IL_4V9F_100
NA

IL_09705.7*
1/B/3015:3016,
1/B/3064:3066
NANA
1/B/3021:3028,
1/B/3054:3059
NANA
1/B/3029:3030,
1/B/3050:3053
NANA
1/B/3033:3037,
1/B/3043:3047
NANA
1/B/3075:3081,
1/B/3101:3106
NANA
1/B/3086:3088,
1/B/3095:3096
NANA

Problematic loops

No problematic loops

Valid loops

#loop idlocationannotation
(mapped to, source)
motif group
(similar to)
1/A/240:244,
1/A/267:273,
1/A/377:379

homologous
J3_4V9F_001
NA
1/A/774:780,
1/A/866:868,
1/A/884:887
NANA
1/A/789:791,
1/A/823:828,
1/A/853:856
NANA
1/A/1159:1161,
1/A/1185:1194,
1/A/1205:1208
NANA
1/A/1404:1409,
1/A/1700:1703,
1/A/1715:1718

homologous
J3_4V9F_005
NA
1/A/1412:1415,
1/A/1680:1686,
1/A/1695:1697

homologous
J3_4V9F_006
NA
1/A/2131:2134,
1/A/2241:2245,
1/A/2256:2262

homologous
J3_4V9F_007
NA
1/A/2329:2331,
1/A/2355:2357,
1/A/2366:2371

homologous
J3_4V9F_008
NA
1/A/2552:2555,
1/A/2580:2583,
1/A/2595:2602

homologous
J3_4V9F_009
NA
1/B/3009:3014,
1/B/3067:3071,
1/B/3110:3114
NANA

Problematic loops

No problematic loops


Coloring options:
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