4U26 Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4U26_001 | 1/AA/12:22 | No text annotation Not in a motif group | homologous HL_5J7L_001 HL_89881.2 | |
| HL_4U26_002 | 1/AA/80:89 | No text annotation Not in a motif group | homologous HL_5J7L_002 NA | |
| HL_4U26_003 | 1/AA/158:163 | GNRA Not in a motif group | homologous HL_5J7L_003 HL_42097.1 | |
| HL_4U26_004 | 1/AA/186:191 | GNRA Not in a motif group | homologous HL_5J7L_004 HL_42097.1 | |
| HL_4U26_005 | 1/AA/206:213 | No text annotation Not in a motif group | ||
| HL_4U26_006 | 1/AA/259:267 | No text annotation Not in a motif group | homologous HL_5J7L_006 HL_69023.2 | |
| HL_4U26_007 | 1/AA/296:301 | GNRA Not in a motif group | homologous HL_5J7L_007 HL_42097.1 | |
| HL_4U26_008 | 1/AA/320:333 | No text annotation Not in a motif group | homologous HL_5J7L_008 HL_81205.2 | |
| HL_4U26_009 | 1/AA/342:347 | UNCG Not in a motif group | homologous HL_5J7L_009 HL_03562.2 | |
| HL_4U26_010 | 1/AA/379:384 | GNRA Not in a motif group | homologous HL_5J7L_010 HL_42097.1 | |
| HL_4U26_011 | 1/AA/419:424 | UNCG Not in a motif group | homologous HL_5J7L_011 HL_03562.2 | |
| HL_4U26_012 | 1/AA/462:470 | No text annotation Not in a motif group | ||
| HL_4U26_013 | 1/AA/522:527 | No text annotation Not in a motif group | geometric HL_5J7L_143 HL_75407.1 | |
| HL_4U26_014 | 1/AA/617:623 | No text annotation Not in a motif group | homologous HL_5J7L_014 HL_26881.1 | |
| HL_4U26_015 | 1/AA/689:698 | No text annotation Not in a motif group | homologous HL_5J7L_015 HL_12326.1 | |
| HL_4U26_016 | 1/AA/726:731 | Other HL Not in a motif group | homologous HL_5J7L_016 HL_87030.2 | |
| HL_4U26_017 | 1/AA/786:796 | No text annotation Not in a motif group | homologous HL_5J7L_017 HL_12326.1 | |
| HL_4U26_018 | 1/AA/839:847 | No text annotation Not in a motif group | ||
| HL_4U26_019 | 1/AA/862:867 | GNRA Not in a motif group | homologous HL_5J7L_019 HL_42097.1 | |
| HL_4U26_020 | 1/AA/897:902 | GNRA Not in a motif group | homologous HL_5J7L_020 HL_42097.1 | |
| HL_4U26_021 | 1/AA/963:972 | No text annotation Not in a motif group | homologous HL_5J7L_021 NA | |
| HL_4U26_022 | 1/AA/1012:1017 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_42097.1 | |
| HL_4U26_023 | 1/AA/1028:1033 | No text annotation Not in a motif group | ||
| HL_4U26_024 | 1/AA/1076:1081 | GNRA Not in a motif group | homologous HL_5J7L_023 HL_42097.1 | |
| HL_4U26_025 | 1/AA/1089:1096 | No text annotation Not in a motif group | homologous HL_5J7L_024 HL_71554.2 | |
| HL_4U26_026 | 1/AA/1133:1141 | No text annotation Not in a motif group | geometric HL_6CF2_001 HL_24068.2 | |
| HL_4U26_027 | 1/AA/1165:1171 | No text annotation Not in a motif group | homologous HL_5J7L_026 HL_90617.2 | |
| HL_4U26_028 | 1/AA/1265:1270 | GNRA Not in a motif group | homologous HL_5J7L_027 HL_42097.1 | |
| HL_4U26_029 | 1/AA/1314:1323 | No text annotation Not in a motif group | homologous HL_5J7L_028 HL_89380.2 | |
| HL_4U26_030 | 1/AA/1356:1366 | No text annotation Not in a motif group | homologous HL_5J7L_029 HL_96366.1 | |
| HL_4U26_031 | 1/AA/1449:1454 | UNCG Not in a motif group | homologous HL_5J7L_030 HL_03562.2 | |
| HL_4U26_032 | 1/AA/1515:1520 | No text annotation Not in a motif group | homologous HL_4LFB_032 NA | |
| HL_4U26_033 | 1/BA/59:68 | No text annotation Not in a motif group | homologous HL_5J7L_134 HL_18177.1 | |
| HL_4U26_034 | 1/BA/87:95 | No text annotation Not in a motif group | homologous HL_5J7L_135 HL_84193.1 | |
| HL_4U26_035 | 1/BA/123:128 | No text annotation Not in a motif group | homologous HL_5J7L_136 HL_75407.1 | |
| HL_4U26_036 | 1/BA/135:144 | No text annotation Not in a motif group | ||
| HL_4U26_037 | 1/BA/158:168 | No text annotation Not in a motif group | homologous HL_5J7L_138 HL_81820.1 | |
| HL_4U26_038 | 1/BA/194:201 | No text annotation Not in a motif group | homologous HL_5J7L_139 HL_06192.2 | |
| HL_4U26_039 | 1/BA/225:230 | No text annotation Not in a motif group | homologous HL_5J7L_140 HL_27930.1 | |
| HL_4U26_040 | 1/BA/246:252 | No text annotation Not in a motif group | homologous HL_5J7L_141 HL_67216.7 | |
| HL_4U26_041 | 1/BA/305:312 | T-loop with 1 bulged base Not in a motif group | homologous HL_5J7L_142 HL_89380.2 | |
| HL_4U26_042 | 1/BA/319:323 | No text annotation Not in a motif group | homologous HL_5J7L_143 HL_75407.1 | |
| HL_4U26_043 | 1/BA/327:335 | No text annotation Not in a motif group | homologous HL_5J7L_144 HL_08002.8 | |
| HL_4U26_044 | 1/BA/382:392 | No text annotation Not in a motif group | homologous HL_5J7L_145 HL_91503.4 | |
| HL_4U26_045 | 1/BA/410:417 | No text annotation Not in a motif group | homologous HL_5J7L_146 HL_96598.1 | |
| HL_4U26_046 | 1/BA/462:467 | No text annotation Not in a motif group | homologous HL_7RQB_015 HL_42097.1 | |
| HL_4U26_047 | 1/BA/487:493 | No text annotation Not in a motif group | homologous HL_5J7L_148 HL_42097.1 | |
| HL_4U26_048 | 1/BA/543:550 | No text annotation Not in a motif group | homologous HL_5J7L_149 HL_79531.1 | |
| HL_4U26_049 | 1/BA/566:575 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5J7L_150 HL_89380.2 | |
| HL_4U26_050 | 1/BA/611:617 | No text annotation Not in a motif group | homologous HL_5J7L_151 HL_90617.2 | |
| HL_4U26_051 | 1/BA/629:634 | GNRA Not in a motif group | homologous HL_5J7L_152 HL_42097.1 | |
| HL_4U26_052 | 1/BA/641:647 | No text annotation Not in a motif group | homologous HL_5J7L_153 HL_77805.2 | |
| HL_4U26_053 | 1/BA/712:719 | No text annotation Not in a motif group | homologous HL_5J7L_154 HL_84085.2 | |
| HL_4U26_054 | 1/BA/744:753 | No text annotation Not in a motif group | homologous HL_4WF9_023 HL_39334.6 | |
| HL_4U26_055 | 1/BA/779:785 | No text annotation Not in a motif group | homologous HL_5J7L_156 HL_74322.1 | |
| HL_4U26_056 | 1/BA/826:831 | No text annotation Not in a motif group | homologous HL_5J7L_157 HL_64365.1 | |
| HL_4U26_058 | 1/BA/955:962 | GNRA Not in a motif group | homologous HL_4WF9_027 HL_42097.1 | |
| HL_4U26_059 | 1/BA/978:985 | No text annotation Not in a motif group | homologous HL_7A0S_027 HL_64430.2 | |
| HL_4U26_060 | 1/BA/1063:1076 | No text annotation Not in a motif group | ||
| HL_4U26_061 | 1/BA/1091:1100 | No text annotation Not in a motif group | ||
| HL_4U26_062 | 1/BA/1172:1177 | No text annotation Not in a motif group | ||
| HL_4U26_063 | 1/BA/1222:1227 | Other HL Not in a motif group | homologous HL_5J7L_164 HL_87030.2 | |
| HL_4U26_064 | 1/BA/1281:1289 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5J7L_165 HL_89380.2 | |
| HL_4U26_065 | 1/BA/1324:1330 | No text annotation Not in a motif group | homologous HL_5J7L_166 HL_46680.1 | |
| HL_4U26_066 | 1/BA/1363:1368 | Other HL Not in a motif group | homologous HL_5J7L_167 HL_87030.2 | |
| HL_4U26_067 | 1/BA/1389:1398 | No text annotation Not in a motif group | homologous HL_5J7L_168 HL_69023.2 | |
| HL_4U26_068 | 1/BA/1451:1459 | No text annotation Not in a motif group | geometric HL_4V9F_041 HL_49678.1 | |
| HL_4U26_069 | 1/BA/1492:1498 | No text annotation Not in a motif group | homologous HL_5J7L_170 HL_46680.1 | |
| HL_4U26_070 | 1/BA/1533:1538 | UNCG Not in a motif group | homologous HL_5J7L_171 HL_03562.2 | |
| HL_4U26_071 | 1/BA/1565:1568 | No text annotation Not in a motif group | homologous HL_7RQB_039 HL_38927.2 | |
| HL_4U26_072 | 1/BA/1612:1619 | No text annotation Not in a motif group | homologous HL_7RQB_040 HL_64430.2 | |
| HL_4U26_073 | 1/BA/1630:1636 | GNRA with one bulged base Not in a motif group | homologous HL_5J7L_174 HL_42097.1 | |
| HL_4U26_074 | 1/BA/1691:1696 | UNCG Not in a motif group | homologous HL_5J7L_175 HL_03562.2 | |
| HL_4U26_075 | 1/BA/1728:1731 | No text annotation Not in a motif group | homologous HL_5J7L_176 HL_98426.1 | |
| HL_4U26_076 | 1/BA/1752:1756 | No text annotation Not in a motif group | homologous HL_5J7L_177 HL_76539.2 | |
| HL_4U26_077 | 1/BA/1777:1787 | No text annotation Not in a motif group | homologous HL_5J7L_178 HL_43613.5 | |
| HL_4U26_078 | 1/BA/1806:1811 | No text annotation Not in a motif group | homologous HL_5J7L_179 HL_42097.1 | |
| HL_4U26_079 | 1/BA/1868:1873 | Other HL Not in a motif group | homologous HL_5J7L_180 HL_42097.1 | |
| HL_4U26_080 | 1/BA/1910:1920 | No text annotation Not in a motif group | geometric HL_5TBW_049 HL_71924.2 | |
| HL_4U26_081 | 1/BA/1949:1957 | No text annotation Not in a motif group | homologous HL_7RQB_049 HL_51824.1 | |
| HL_4U26_082 | 1/BA/2027:2036 | No text annotation Not in a motif group | homologous HL_7RQB_050 HL_90642.6 | |
| HL_4U26_084 | 1/BA/2209:2215 | No text annotation Not in a motif group | homologous HL_5J7L_185 HL_16845.6 | |
| HL_4U26_085 | 1/BA/2248:2256 | No text annotation Not in a motif group | homologous HL_5J7L_186 NA | |
| HL_4U26_086 | 1/BA/2264:2276 | No text annotation Not in a motif group | homologous HL_5J7L_187 HL_19870.6 | |
| HL_4U26_087 | 1/BA/2303:2313 | No text annotation Not in a motif group | homologous HL_7RQB_055 HL_11805.3 | |
| HL_4U26_088 | 1/BA/2324:2331 | No text annotation Not in a motif group | homologous HL_5J7L_189 HL_12078.2 | |
| HL_4U26_089 | 1/BA/2356:2361 | Other HL Not in a motif group | homologous HL_5J7L_190 HL_87030.2 | |
| HL_4U26_090 | 1/BA/2374:2379 | GNRA Not in a motif group | homologous HL_5J7L_191 HL_42097.1 | |
| HL_4U26_091 | 1/BA/2404:2413 | No text annotation Not in a motif group | homologous HL_5J7L_192 HL_30784.2 | |
| HL_4U26_092 | 1/BA/2471:2479 | No text annotation Not in a motif group | homologous HL_5J7L_193 HL_06192.2 | |
| HL_4U26_093 | 1/BA/2528:2535 | No text annotation Not in a motif group | homologous HL_5J7L_194 HL_88526.2 | |
| HL_4U26_094 | 1/BA/2551:2557 | No text annotation Not in a motif group | homologous HL_4WF9_058 HL_43656.2 | |
| HL_4U26_095 | 1/BA/2594:2599 | GNRA Not in a motif group | homologous HL_5J7L_196 HL_42097.1 | |
| HL_4U26_096 | 1/BA/2658:2663 | GNRA Not in a motif group | geometric HL_4V9F_066 HL_42097.1 | |
| HL_4U26_097 | 1/BA/2701:2706 | Ribsomal LSU H95 Not in a motif group | homologous HL_5J7L_198 HL_46680.1 | |
| HL_4U26_098 | 1/BA/2745:2759 | No text annotation Not in a motif group | homologous HL_5J7L_199 HL_56677.7 | |
| HL_4U26_099 | 1/BA/2796:2799 | No text annotation Not in a motif group | geometric HL_5TBW_068 HL_98426.1 | |
| HL_4U26_100 | 1/BA/2819:2827 | No text annotation Not in a motif group | homologous HL_5J7L_201 HL_27930.1 | |
| HL_4U26_101 | 1/BA/2856:2861 | Other HL Not in a motif group | homologous HL_5J7L_202 HL_42097.1 | |
| HL_4U26_102 | 1/BB/38:44 | No text annotation Not in a motif group | geometric HL_5J7L_203 HL_87939.1 | |
| HL_4U26_103 | 1/BB/86:90 | No text annotation Not in a motif group | homologous HL_5J7L_204 HL_38927.2 | |
| HL_4U26_104 | 1/CA/12:22 | No text annotation Not in a motif group | homologous HL_5J7L_001 HL_89881.2 | |
| HL_4U26_106 | 1/CA/158:163 | GNRA Not in a motif group | homologous HL_5J7L_003 HL_42097.1 | |
| HL_4U26_107 | 1/CA/186:191 | GNRA Not in a motif group | homologous HL_5J7L_004 HL_42097.1 | |
| HL_4U26_108 | 1/CA/203:214 | No text annotation Not in a motif group | ||
| HL_4U26_109 | 1/CA/259:267 | No text annotation Not in a motif group | homologous HL_5J7L_006 HL_69023.2 | |
| HL_4U26_110 | 1/CA/296:301 | GNRA Not in a motif group | homologous HL_5J7L_007 HL_42097.1 | |
| HL_4U26_111 | 1/CA/322:332 | No text annotation Not in a motif group | ||
| HL_4U26_112 | 1/CA/342:347 | UNCG Not in a motif group | homologous HL_4LFB_009 HL_03562.2 | |
| HL_4U26_113 | 1/CA/379:384 | GNRA Not in a motif group | homologous HL_5J7L_010 HL_42097.1 | |
| HL_4U26_114 | 1/CA/419:424 | UNCG Not in a motif group | homologous HL_5J7L_011 HL_03562.2 | |
| HL_4U26_115 | 1/CA/461:471 | No text annotation Not in a motif group | ||
| HL_4U26_116 | 1/CA/522:527 | No text annotation Not in a motif group | geometric HL_4WF9_003 HL_75407.1 | |
| HL_4U26_117 | 1/CA/617:623 | No text annotation Not in a motif group | homologous HL_5J7L_014 HL_26881.1 | |
| HL_4U26_118 | 1/CA/689:698 | No text annotation Not in a motif group | homologous HL_5J7L_015 HL_12326.1 | |
| HL_4U26_119 | 1/CA/726:731 | Other HL Not in a motif group | homologous HL_5J7L_016 HL_87030.2 | |
| HL_4U26_120 | 1/CA/786:796 | No text annotation Not in a motif group | homologous HL_5J7L_017 HL_12326.1 | |
| HL_4U26_121 | 1/CA/839:847 | No text annotation Not in a motif group | geometric HL_2ZZM_002 HL_23083.1 | |
| HL_4U26_122 | 1/CA/862:867 | GNRA Not in a motif group | homologous HL_4LFB_019 HL_42097.1 | |
| HL_4U26_123 | 1/CA/897:902 | GNRA Not in a motif group | homologous HL_5J7L_020 HL_42097.1 | |
| HL_4U26_124 | 1/CA/963:972 | No text annotation Not in a motif group | homologous HL_5J7L_021 NA | |
| HL_4U26_125 | 1/CA/1012:1017 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_42097.1 | |
| HL_4U26_126 | 1/CA/1076:1081 | GNRA Not in a motif group | homologous HL_5J7L_023 HL_42097.1 | |
| HL_4U26_127 | 1/CA/1089:1096 | No text annotation Not in a motif group | homologous HL_5J7L_024 HL_71554.2 | |
| HL_4U26_128 | 1/CA/1134:1140 | No text annotation Not in a motif group | homologous HL_5J7L_025 HL_03562.2 | |
| HL_4U26_129 | 1/CA/1165:1171 | No text annotation Not in a motif group | homologous HL_5J7L_026 HL_90617.2 | |
| HL_4U26_130 | 1/CA/1265:1270 | GNRA Not in a motif group | homologous HL_5J7L_027 HL_42097.1 | |
| HL_4U26_131 | 1/CA/1314:1323 | No text annotation Not in a motif group | homologous HL_6CZR_100 HL_89380.2 | |
| HL_4U26_132 | 1/CA/1356:1366 | No text annotation Not in a motif group | homologous HL_4LFB_030 HL_96366.1 | |
| HL_4U26_133 | 1/CA/1449:1454 | UNCG Not in a motif group | homologous HL_4LFB_031 HL_03562.2 | |
| HL_4U26_134 | 1/CA/1515:1520 | No text annotation Not in a motif group | homologous HL_4LFB_032 NA | |
| HL_4U26_135 | 1/DA/59:68 | No text annotation Not in a motif group | homologous HL_5J7L_134 HL_18177.1 | |
| HL_4U26_136 | 1/DA/87:95 | No text annotation Not in a motif group | homologous HL_5J7L_135 HL_84193.1 | |
| HL_4U26_137 | 1/DA/122:129 | No text annotation Not in a motif group | ||
| HL_4U26_138 | 1/DA/137:142 | No text annotation Not in a motif group | homologous HL_5J7L_137 HL_30239.1 | |
| HL_4U26_139 | 1/DA/158:168 | No text annotation Not in a motif group | homologous HL_5J7L_138 HL_81820.1 | |
| HL_4U26_140 | 1/DA/194:201 | No text annotation Not in a motif group | geometric HL_5J7L_139 HL_06192.2 | |
| HL_4U26_141 | 1/DA/225:230 | No text annotation Not in a motif group | homologous HL_5J7L_140 HL_27930.1 | |
| HL_4U26_142 | 1/DA/246:252 | No text annotation Not in a motif group | homologous HL_5J7L_141 HL_67216.7 | |
| HL_4U26_143 | 1/DA/305:312 | T-loop with 1 bulged base Not in a motif group | homologous HL_5J7L_142 HL_89380.2 | |
| HL_4U26_144 | 1/DA/319:323 | No text annotation Not in a motif group | homologous HL_5J7L_143 HL_75407.1 | |
| HL_4U26_145 | 1/DA/327:335 | No text annotation Not in a motif group | homologous HL_5J7L_144 HL_08002.8 | |
| HL_4U26_146 | 1/DA/382:392 | No text annotation Not in a motif group | homologous HL_5J7L_145 HL_91503.4 | |
| HL_4U26_147 | 1/DA/410:417 | No text annotation Not in a motif group | homologous HL_5J7L_146 HL_96598.1 | |
| HL_4U26_148 | 1/DA/462:467 | No text annotation Not in a motif group | homologous HL_7RQB_015 HL_42097.1 | |
| HL_4U26_149 | 1/DA/487:493 | No text annotation Not in a motif group | homologous HL_5J7L_148 HL_42097.1 | |
| HL_4U26_150 | 1/DA/543:550 | No text annotation Not in a motif group | homologous HL_5J7L_149 HL_79531.1 | |
| HL_4U26_151 | 1/DA/566:575 | T-loop with 2 stacked bulged bases Not in a motif group | geometric HL_5J7L_150 HL_89380.2 | |
| HL_4U26_152 | 1/DA/611:617 | No text annotation Not in a motif group | geometric HL_5J7L_151 HL_90617.2 | |
| HL_4U26_153 | 1/DA/629:634 | No text annotation Not in a motif group | homologous HL_7RQB_020 HL_42097.1 | |
| HL_4U26_154 | 1/DA/641:647 | No text annotation Not in a motif group | homologous HL_5J7L_153 HL_77805.2 | |
| HL_4U26_155 | 1/DA/712:719 | No text annotation Not in a motif group | homologous HL_5J7L_154 HL_84085.2 | |
| HL_4U26_156 | 1/DA/744:753 | No text annotation Not in a motif group | homologous HL_7A0S_022 HL_39334.6 | |
| HL_4U26_157 | 1/DA/779:785 | No text annotation Not in a motif group | geometric HL_6JQ6_004 HL_03562.2 | |
| HL_4U26_158 | 1/DA/826:831 | No text annotation Not in a motif group | homologous HL_7A0S_024 HL_64365.1 | |
| HL_4U26_160 | 1/DA/955:962 | GNRA Not in a motif group | homologous HL_4WF9_027 HL_42097.1 | |
| HL_4U26_161 | 1/DA/978:985 | No text annotation Not in a motif group | homologous HL_4WF9_028 HL_64430.2 | |
| HL_4U26_162 | 1/DA/1059:1079 | No text annotation Not in a motif group | ||
| HL_4U26_163 | 1/DA/1092:1099 | No text annotation Not in a motif group | ||
| HL_4U26_164 | 1/DA/1167:1182 | No text annotation Not in a motif group | ||
| HL_4U26_165 | 1/DA/1222:1227 | Other HL Not in a motif group | homologous HL_5J7L_164 HL_87030.2 | |
| HL_4U26_166 | 1/DA/1281:1289 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5J7L_165 HL_89380.2 | |
| HL_4U26_167 | 1/DA/1324:1330 | No text annotation Not in a motif group | homologous HL_5J7L_166 HL_46680.1 | |
| HL_4U26_168 | 1/DA/1362:1369 | No text annotation Not in a motif group | geometric HL_7A0S_056 HL_84085.2 | |
| HL_4U26_169 | 1/DA/1389:1398 | No text annotation Not in a motif group | ||
| HL_4U26_170 | 1/DA/1451:1459 | No text annotation Not in a motif group | homologous HL_5J7L_169 HL_53837.1 | |
| HL_4U26_171 | 1/DA/1492:1498 | No text annotation Not in a motif group | homologous HL_5J7L_170 HL_46680.1 | |
| HL_4U26_173 | 1/DA/1565:1568 | No text annotation Not in a motif group | homologous HL_7RQB_039 HL_38927.2 | |
| HL_4U26_174 | 1/DA/1612:1619 | No text annotation Not in a motif group | homologous HL_7A0S_040 HL_64430.2 | |
| HL_4U26_175 | 1/DA/1630:1636 | GNRA with one bulged base Not in a motif group | homologous HL_5J7L_174 HL_42097.1 | |
| HL_4U26_176 | 1/DA/1691:1696 | UNCG Not in a motif group | homologous HL_5J7L_175 HL_03562.2 | |
| HL_4U26_177 | 1/DA/1727:1733 | Other HL Not in a motif group | geometric HL_1P6V_001 HL_03562.2 | |
| HL_4U26_178 | 1/DA/1752:1756 | No text annotation Not in a motif group | homologous HL_5J7L_177 HL_76539.2 | |
| HL_4U26_179 | 1/DA/1777:1787 | No text annotation Not in a motif group | homologous HL_4WF9_043 HL_43613.5 | |
| HL_4U26_180 | 1/DA/1806:1811 | No text annotation Not in a motif group | homologous HL_5J7L_179 HL_42097.1 | |
| HL_4U26_181 | 1/DA/1868:1873 | Other HL Not in a motif group | homologous HL_5J7L_180 HL_42097.1 | |
| HL_4U26_182 | 1/DA/1910:1920 | No text annotation Not in a motif group | geometric HL_5TBW_049 HL_71924.2 | |
| HL_4U26_183 | 1/DA/1949:1957 | No text annotation Not in a motif group | homologous HL_5J7L_182 HL_51824.1 | |
| HL_4U26_184 | 1/DA/2027:2036 | No text annotation Not in a motif group | homologous HL_4WF9_047 HL_90642.6 | |
| HL_4U26_186 | 1/DA/2209:2215 | No text annotation Not in a motif group | homologous HL_5J7L_185 HL_16845.6 | |
| HL_4U26_187 | 1/DA/2248:2256 | No text annotation Not in a motif group | homologous HL_5J7L_186 NA | |
| HL_4U26_188 | 1/DA/2264:2276 | No text annotation Not in a motif group | homologous HL_7RQB_054 HL_19870.6 | |
| HL_4U26_189 | 1/DA/2303:2313 | No text annotation Not in a motif group | homologous HL_7RQB_055 HL_11805.3 | |
| HL_4U26_190 | 1/DA/2324:2331 | No text annotation Not in a motif group | homologous HL_5J7L_189 HL_12078.2 | |
| HL_4U26_191 | 1/DA/2356:2361 | Other HL Not in a motif group | homologous HL_5J7L_190 HL_87030.2 | |
| HL_4U26_192 | 1/DA/2374:2379 | GNRA Not in a motif group | homologous HL_5J7L_191 HL_42097.1 | |
| HL_4U26_193 | 1/DA/2404:2413 | No text annotation Not in a motif group | homologous HL_5J7L_192 HL_30784.2 | |
| HL_4U26_194 | 1/DA/2471:2479 | No text annotation Not in a motif group | homologous HL_5J7L_193 HL_06192.2 | |
| HL_4U26_195 | 1/DA/2528:2535 | No text annotation Not in a motif group | homologous HL_5J7L_194 HL_88526.2 | |
| HL_4U26_196 | 1/DA/2551:2557 | No text annotation Not in a motif group | homologous HL_5J7L_195 NA | |
| HL_4U26_197 | 1/DA/2594:2599 | No text annotation Not in a motif group | homologous HL_7RQB_063 HL_42097.1 | |
| HL_4U26_198 | 1/DA/2658:2663 | GNRA Not in a motif group | homologous HL_5J7L_197 HL_42097.1 | |
| HL_4U26_199 | 1/DA/2701:2706 | Ribsomal LSU H95 Not in a motif group | homologous HL_5J7L_198 HL_46680.1 | |
| HL_4U26_200 | 1/DA/2745:2759 | No text annotation Not in a motif group | homologous HL_5J7L_199 HL_56677.7 | |
| HL_4U26_201 | 1/DA/2795:2801 | Other HL Not in a motif group | homologous HL_5J7L_200 HL_34168.2 | |
| HL_4U26_202 | 1/DA/2819:2827 | No text annotation Not in a motif group | homologous HL_5J7L_201 HL_27930.1 | |
| HL_4U26_203 | 1/DA/2856:2861 | No text annotation Not in a motif group | homologous HL_7RQB_069 HL_42097.1 | |
| HL_4U26_204 | 1/DB/38:44 | No text annotation Not in a motif group | homologous HL_7RQB_070 HL_87939.1 | |
| HL_4U26_205 | 1/DB/86:90 | No text annotation Not in a motif group | homologous HL_5J7L_204 HL_38927.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4U26_057 | No text annotation | ||
| HL_4U26_083 | No text annotation | ||
| HL_4U26_105 | No text annotation | ||
| HL_4U26_159 | No text annotation | ||
| HL_4U26_172 | UNCG | ||
| HL_4U26_185 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4U26_001 | 1/AA/30:32, 1/AA/552:553 | Single bulged G Not in a motif group | homologous IL_5J7L_001 IL_00225.2 | |
| IL_4U26_002 | 1/AA/44:45, 1/AA/396:398 | Single bulged A Not in a motif group | homologous IL_5J7L_002 IL_37497.2 | |
| IL_4U26_003 | 1/AA/47:52, 1/AA/359:361 | No text annotation Not in a motif group | homologous IL_5J7L_003 IL_11178.1 | |
| IL_4U26_004 | 1/AA/54:56, 1/AA/356:357 | Minor groove platform Not in a motif group | homologous IL_4LFB_004 IL_93353.1 | |
| IL_4U26_005 | 1/AA/63:66, 1/AA/103:104 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_005 IL_76389.1 | |
| IL_4U26_006 | 1/AA/67:69, 1/AA/99:102 | Minor groove platform with extra cWW Not in a motif group | homologous IL_5J7L_006 IL_65006.1 | |
| IL_4U26_007 | 1/AA/70:73, 1/AA/97:98 | Minor groove platform Not in a motif group | homologous IL_5J7L_007 IL_15052.1 | |
| IL_4U26_008 | 1/AA/75:76, 1/AA/93:95 | Major groove intercalation Not in a motif group | geometric IL_5J7L_352 IL_16396.2 | |
| IL_4U26_009 | 1/AA/128:131, 1/AA/231:233 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5J7L_009 IL_82068.2 | |
| IL_4U26_010 | 1/AA/132:136, 1/AA/227:230 | Minor groove platform related Not in a motif group | homologous IL_5J7L_010 IL_58764.3 | |
| IL_4U26_011 | 1/AA/147:153, 1/AA/168:175 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_5J7L_012 IL_80604.2 | |
| IL_4U26_012 | 1/AA/202:206, 1/AA/213:215 | No text annotation Not in a motif group | ||
| IL_4U26_013 | 1/AA/242:247, 1/AA/277:284 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_5J7L_014 IL_45067.2 | |
| IL_4U26_014 | 1/AA/249:252, 1/AA/274:275 | No text annotation Not in a motif group | homologous IL_5J7L_015 IL_48100.2 | |
| IL_4U26_015 | 1/AA/292:293, 1/AA/304:308 | C-loop Not in a motif group | homologous IL_6CZR_125 IL_37712.2 | |
| IL_4U26_016 | 1/AA/367:369, 1/AA/392:393 | Single bulged U Not in a motif group | homologous IL_5J7L_017 IL_83039.13 | |
| IL_4U26_017 | 1/AA/371:375, 1/AA/389:390 | C-loop Not in a motif group | geometric IL_5J7L_018 IL_75255.1 | |
| IL_4U26_018 | 1/AA/375:376, 1/AA/387:389 | Single bulged G Not in a motif group | homologous IL_5J7L_019 IL_00225.2 | |
| IL_4U26_019 | 1/AA/409:416, 1/AA/427:433 | No text annotation Not in a motif group | homologous IL_4LFB_017 IL_28026.1 | |
| IL_4U26_020 | 1/AA/440:442, 1/AA/492:497 | No text annotation Not in a motif group | homologous IL_5J7L_021 IL_22248.1 | |
| IL_4U26_021 | 1/AA/446:450, 1/AA/483:488 | tSH-tHW-tWW Not in a motif group | homologous IL_5J7L_022 IL_88269.3 | |
| IL_4U26_022 | 1/AA/450:453, 1/AA/479:483 | No text annotation Not in a motif group | ||
| IL_4U26_023 | 1/AA/453:455, 1/AA/477:479 | No text annotation Not in a motif group | geometric IL_4M4O_002 IL_95997.1 | |
| IL_4U26_024 | 1/AA/504:511, 1/AA/540:541 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5J7L_024 IL_15861.7 | |
| IL_4U26_025 | 1/AA/515:521, 1/AA/528:536 | No text annotation Not in a motif group | geometric IL_4V88_415 IL_55871.1 | |
| IL_4U26_026 | 1/AA/569:575, 1/AA/880:881 | No text annotation Not in a motif group | homologous IL_4LFB_022 IL_69996.1 | |
| IL_4U26_027 | 1/AA/580:584, 1/AA/757:761 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_027 IL_17136.1 | |
| IL_4U26_028 | 1/AA/594:596, 1/AA/644:645 | Major groove platform Not in a motif group | homologous IL_5J7L_028 IL_27635.1 | |
| IL_4U26_029 | 1/AA/597:598, 1/AA/640:643 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_029 IL_09061.6 | |
| IL_4U26_030 | 1/AA/605:612, 1/AA/628:633 | No text annotation Not in a motif group | homologous IL_5J7L_030 IL_78349.1 | |
| IL_4U26_031 | 1/AA/654:655, 1/AA/751:754 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_4LFB_027 IL_50694.2 | |
| IL_4U26_032 | 1/AA/658:659, 1/AA/746:748 | Single stack bend Not in a motif group | homologous IL_5J7L_032 IL_76488.2 | |
| IL_4U26_033 | 1/AA/662:666, 1/AA/740:743 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_033 IL_71110.1 | |
| IL_4U26_034 | 1/AA/684:688, 1/AA/699:706 | Kink-turn Not in a motif group | homologous IL_5J7L_035 IL_45067.2 | |
| IL_4U26_035 | 1/AA/774:778, 1/AA/804:805 | Left turn Not in a motif group | homologous IL_5J7L_036 IL_29346.1 | |
| IL_4U26_036 | 1/AA/779:783, 1/AA/799:803 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_037 IL_17136.1 | |
| IL_4U26_037 | 1/AA/887:894, 1/AA/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_5J7L_038 IL_24606.2 | |
| IL_4U26_038 | 1/AA/922:923, 1/AA/1393:1395 | Single bulged A Not in a motif group | homologous IL_5J7L_039 IL_37497.2 | |
| IL_4U26_039 | 1/AA/925:927, 1/AA/1390:1391 | Single bulged G Not in a motif group | homologous IL_5J7L_040 IL_00225.2 | |
| IL_4U26_040 | 1/AA/933:935, 1/AA/1380:1384 | Minor groove platform Not in a motif group | homologous IL_5J7L_041 IL_47078.1 | |
| IL_4U26_041 | 1/AA/953:954, 1/AA/1226:1228 | Minor groove platform Not in a motif group | homologous IL_5J7L_042 IL_42622.2 | |
| IL_4U26_042 | 1/AA/993:997, 1/AA/1044:1045 | Minor groove platform Not in a motif group | geometric IL_5J7L_043 IL_47078.1 | |
| IL_4U26_043 | 1/AA/998:999, 1/AA/1041:1043 | Single stack bend Not in a motif group | homologous IL_5J7L_044 IL_76488.2 | |
| IL_4U26_044 | 1/AA/1048:1050, 1/AA/1208:1209 | Single bulged U Not in a motif group | homologous IL_5J7L_046 IL_83039.13 | |
| IL_4U26_045 | 1/AA/1052:1056, 1/AA/1204:1206 | Isolated cWS basepair Not in a motif group | homologous IL_4LFB_044 IL_76319.2 | |
| IL_4U26_046 | 1/AA/1057:1058, 1/AA/1199:1203 | Minor groove platform Not in a motif group | homologous IL_5J7L_048 IL_93353.1 | |
| IL_4U26_047 | 1/AA/1060:1061, 1/AA/1195:1197 | Single bulged A Not in a motif group | homologous IL_5J7L_049 IL_37497.2 | |
| IL_4U26_048 | 1/AA/1061:1063, 1/AA/1193:1195 | No text annotation Not in a motif group | geometric IL_5J7L_050 IL_95997.1 | |
| IL_4U26_049 | 1/AA/1124:1128, 1/AA/1144:1149 | No text annotation Not in a motif group | homologous IL_5J7L_051 IL_93211.1 | |
| IL_4U26_050 | 1/AA/1129:1132, 1/AA/1142:1143 | Minor groove platform Not in a motif group | homologous IL_5J7L_052 IL_15052.1 | |
| IL_4U26_051 | 1/AA/1158:1161, 1/AA/1175:1181 | No text annotation Not in a motif group | geometric IL_5J7L_053 IL_42032.1 | |
| IL_4U26_052 | 1/AA/1247:1253, 1/AA/1284:1290 | No text annotation Not in a motif group | homologous IL_5J7L_054 IL_09129.1 | |
| IL_4U26_053 | 1/AA/1255:1258, 1/AA/1277:1282 | No text annotation Not in a motif group | homologous IL_5J7L_055 IL_75461.4 | |
| IL_4U26_054 | 1/AA/1259:1263, 1/AA/1272:1276 | Triple sheared Not in a motif group | homologous IL_5J7L_056 IL_56467.8 | |
| IL_4U26_055 | 1/AA/1303:1308, 1/AA/1329:1334 | No text annotation Not in a motif group | geometric IL_5J7L_057 IL_19954.2 | |
| IL_4U26_056 | 1/AA/1399:1401, 1/AA/1501:1504 | No text annotation Not in a motif group | geometric IL_4V88_463 IL_36143.3 | |
| IL_4U26_057 | 1/AA/1401:1404, 1/AA/1497:1501 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_99670.1 | |
| IL_4U26_058 | 1/AA/1405:1407, 1/AA/1494:1496 | No text annotation Not in a motif group | geometric IL_4V88_465 IL_95997.1 | |
| IL_4U26_059 | 1/AA/1407:1409, 1/AA/1491:1494 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_3TD0_005 IL_82068.2 | |
| IL_4U26_060 | 1/AA/1412:1415, 1/AA/1485:1488 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_6CZR_168 IL_67743.1 | |
| IL_4U26_061 | 1/AA/1416:1419, 1/AA/1481:1484 | Double sheared Not in a motif group | homologous IL_5J7L_062 IL_09705.9 | |
| IL_4U26_062 | 1/AA/1430:1435, 1/AA/1466:1470 | Triple sheared related Not in a motif group | homologous IL_5J7L_063 IL_64879.2 | |
| IL_4U26_063 | 1/AA/1440:1442, 1/AA/1460:1461 | Minor groove platform Not in a motif group | homologous IL_5J7L_064 IL_42622.2 | |
| IL_4U26_064 | 1/AA/1445:1448, 1/AA/1455:1457 | No text annotation Not in a motif group | homologous IL_5J7L_065 IL_02284.5 | |
| IL_4U26_065 | 1/BA/24:30, 1/BA/510:516 | Triple sheared with non-canonical cWW Not in a motif group | geometric IL_5J7L_245 IL_66414.6 | |
| IL_4U26_066 | 1/BA/36:37, 1/BA/442:444 | Single bulged A Not in a motif group | homologous IL_5J7L_246 IL_37497.2 | |
| IL_4U26_067 | 1/BA/43:44, 1/BA/434:436 | Minor groove platform Not in a motif group | homologous IL_5J7L_247 IL_42622.2 | |
| IL_4U26_068 | 1/BA/81:85, 1/BA/97:105 | No text annotation Not in a motif group | homologous IL_5J7L_248 IL_93699.1 | |
| IL_4U26_069 | 1/BA/183:184, 1/BA/212:214 | Single stack bend Not in a motif group | homologous IL_5J7L_249 IL_76488.2 | |
| IL_4U26_070 | 1/BA/188:194, 1/BA/201:208 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_5J7L_250 IL_04346.7 | |
| IL_4U26_071 | 1/BA/239:245, 1/BA/253:258 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_251 IL_76042.2 | |
| IL_4U26_072 | 1/BA/269:271, 1/BA/366:370 | No text annotation Not in a motif group | homologous IL_5J7L_252 IL_47972.1 | |
| IL_4U26_073 | 1/BA/274:281, 1/BA/359:363 | No text annotation Not in a motif group | homologous IL_5J7L_253 IL_77870.1 | |
| IL_4U26_074 | 1/BA/293:295, 1/BA/343:347 | No text annotation Not in a motif group | homologous IL_5J7L_254 IL_69440.1 | |
| IL_4U26_075 | 1/BA/481:484, 1/BA/496:509 | No text annotation Not in a motif group | geometric IL_5J7L_255 IL_60992.6 | |
| IL_4U26_076 | 1/BA/536:539, 1/BA/554:557 | Double sheared Not in a motif group | homologous IL_5J7L_256 IL_09705.9 | |
| IL_4U26_077 | 1/BA/564:566, 1/BA/575:577 | No text annotation Not in a motif group | geometric IL_5J7L_257 IL_95997.1 | |
| IL_4U26_078 | 1/BA/606:610, 1/BA/618:622 | AAA cross-strand stack Not in a motif group | homologous IL_5J7L_258 IL_17136.1 | |
| IL_4U26_079 | 1/BA/672:674, 1/BA/806:808 | No text annotation Not in a motif group | geometric IL_7RQB_017 IL_95997.1 | |
| IL_4U26_080 | 1/BA/674:678, 1/BA/799:806 | tHW-tHW cross-strand stack Not in a motif group | homologous IL_5J7L_260 IL_17470.6 | |
| IL_4U26_081 | 1/BA/697:698, 1/BA/763:765 | Single bulged A Not in a motif group | homologous IL_5J7L_261 IL_37497.2 | |
| IL_4U26_082 | 1/BA/702:703, 1/BA/728:730 | Single bulged G Not in a motif group | geometric IL_5J7L_262 IL_00225.2 | |
| IL_4U26_083 | 1/BA/703:707, 1/BA/724:728 | Triple sheared Not in a motif group | homologous IL_5J7L_263 IL_56467.8 | |
| IL_4U26_084 | 1/BA/738:740, 1/BA/757:758 | Major groove platform Not in a motif group | homologous IL_5J7L_264 IL_27635.1 | |
| IL_4U26_085 | 1/BA/775:777, 1/BA/787:791 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_265 IL_90991.6 | |
| IL_4U26_086 | 1/BA/844:847, 1/BA/933:934 | No text annotation Not in a motif group | ||
| IL_4U26_087 | 1/BA/847:848, 1/BA/930:933 | Stack outside cWW Not in a motif group | geometric IL_5J7L_268 IL_37629.1 | |
| IL_4U26_088 | 1/BA/850:851, 1/BA/926:928 | Single stack bend Not in a motif group | homologous IL_5J7L_269 IL_76488.2 | |
| IL_4U26_089 | 1/BA/856:862, 1/BA/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_5J7L_270 IL_93830.3 | |
| IL_4U26_090 | 1/BA/862:863, 1/BA/913:915 | Single bulged G Not in a motif group | homologous IL_5J7L_271 IL_00225.2 | |
| IL_4U26_091 | 1/BA/864:868, 1/BA/909:912 | C-loop Not in a motif group | homologous IL_5J7L_272 IL_63596.6 | |
| IL_4U26_092 | 1/BA/870:872, 1/BA/905:907 | No text annotation Not in a motif group | homologous IL_5J7L_273 IL_95997.1 | |
| IL_4U26_093 | 1/BA/875:879, 1/BA/898:902 | Triple sheared Not in a motif group | homologous IL_5J7L_274 IL_56467.8 | |
| IL_4U26_094 | 1/BA/880:881, 1/BA/895:897 | No text annotation Not in a motif group | homologous IL_5J7L_275 NA | |
| IL_4U26_095 | 1/BA/994:996, 1/BA/1159:1160 | Single bulged C Not in a motif group | homologous IL_5J7L_276 IL_61258.12 | |
| IL_4U26_096 | 1/BA/998:1002, 1/BA/1153:1157 | UAA/GAN Not in a motif group | homologous IL_4WF9_036 IL_89002.2 | |
| IL_4U26_097 | 1/BA/1004:1011, 1/BA/1150:1151 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5J7L_278 IL_15861.7 | |
| IL_4U26_098 | 1/BA/1011:1013, 1/BA/1149:1150 | Single bulged U Not in a motif group | geometric IL_4WF9_038 IL_83039.13 | |
| IL_4U26_099 | 1/BA/1018:1024, 1/BA/1140:1144 | No text annotation Not in a motif group | homologous IL_5J7L_280 IL_57188.3 | |
| IL_4U26_100 | 1/BA/1024:1030, 1/BA/1124:1140 | No text annotation Not in a motif group | geometric IL_5J7L_281 IL_50715.1 | |
| IL_4U26_101 | 1/BA/1031:1034, 1/BA/1121:1123 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5J7L_282 IL_82068.2 | |
| IL_4U26_102 | 1/BA/1038:1041, 1/BA/1114:1117 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_283 IL_30621.2 | |
| IL_4U26_104 | 1/BA/1059:1063, 1/BA/1076:1079 | No text annotation Not in a motif group | ||
| IL_4U26_105 | 1/BA/1087:1090, 1/BA/1101:1102 | Multiple bulged bases Not in a motif group | geometric IL_6IV9_001 IL_16396.2 | |
| IL_4U26_106 | 1/BA/1196:1198, 1/BA/1247:1250 | Isolated cWS basepair Not in a motif group | homologous IL_5J7L_286 IL_52767.2 | |
| IL_4U26_107 | 1/BA/1202:1206, 1/BA/1240:1243 | No text annotation Not in a motif group | homologous IL_5J7L_287 IL_91920.1 | |
| IL_4U26_108 | 1/BA/1208:1215, 1/BA/1234:1238 | Kink-turn Not in a motif group | homologous IL_5J7L_288 IL_70923.2 | |
| IL_4U26_109 | 1/BA/1262:1269, 1/BA/2011:2017 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_289 IL_04346.7 | |
| IL_4U26_110 | 1/BA/1310:1313, 1/BA/1603:1604 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4WF9_049 IL_50694.2 | |
| IL_4U26_111 | 1/BA/1319:1323, 1/BA/1331:1333 | C-loop Not in a motif group | homologous IL_5J7L_291 IL_63596.6 | |
| IL_4U26_112 | 1/BA/1351:1355, 1/BA/1376:1380 | UAA/GAN Not in a motif group | homologous IL_5J7L_292 IL_89002.2 | |
| IL_4U26_113 | 1/BA/1357:1361, 1/BA/1370:1374 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_293 IL_17136.1 | |
| IL_4U26_114 | 1/BA/1414:1416, 1/BA/1582:1588 | No text annotation Not in a motif group | ||
| IL_4U26_115 | 1/BA/1417:1421, 1/BA/1577:1581 | UAA/GAN Not in a motif group | homologous IL_5J7L_295 IL_89002.2 | |
| IL_4U26_116 | 1/BA/1432:1435, 1/BA/1557:1561 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_296 IL_55178.1 | |
| IL_4U26_117 | 1/BA/1437:1440, 1/BA/1551:1555 | tSH-tHW Not in a motif group | homologous IL_5J7L_297 IL_04059.1 | |
| IL_4U26_118 | 1/BA/1450:1451, 1/BA/1459:1461 | Single bulged U Not in a motif group | homologous IL_5J7L_298 IL_83039.13 | |
| IL_4U26_119 | 1/BA/1468:1471, 1/BA/1520:1524 | No text annotation Not in a motif group | homologous IL_5J7L_299 IL_68574.2 | |
| IL_4U26_120 | 1/BA/1474:1479, 1/BA/1512:1517 | No text annotation Not in a motif group | ||
| IL_4U26_121 | 1/BA/1481:1482, 1/BA/1507:1510 | No text annotation Not in a motif group | homologous IL_5J7L_301 IL_67474.4 | |
| IL_4U26_122 | 1/BA/1489:1491, 1/BA/1499:1500 | Single bulged A Not in a motif group | homologous IL_5J7L_302 IL_37497.2 | |
| IL_4U26_123 | 1/BA/1526:1529, 1/BA/1542:1546 | UAA/GAN variation Not in a motif group | homologous IL_5J7L_303 IL_07235.1 | |
| IL_4U26_124 | 1/BA/1651:1656, 1/BA/2004:2006 | No text annotation Not in a motif group | homologous IL_5J7L_304 IL_12566.2 | |
| IL_4U26_125 | 1/BA/1663:1665, 1/BA/1995:1997 | Isolated tWW turn Not in a motif group | homologous IL_5J7L_305 IL_54997.7 | |
| IL_4U26_126 | 1/BA/1666:1669, 1/BA/1993:1994 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_5J7L_306 IL_50694.2 | |
| IL_4U26_127 | 1/BA/1669:1674, 1/BA/1990:1993 | Intercalated tWH Not in a motif group | homologous IL_5J7L_307 IL_82842.2 | |
| IL_4U26_128 | 1/BA/1686:1691, 1/BA/1696:1702 | tSH-tSH-tHH-tHS Not in a motif group | geometric IL_5J7L_308 IL_65969.2 | |
| IL_4U26_129 | 1/BA/1712:1718, 1/BA/1742:1746 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_309 IL_88269.3 | |
| IL_4U26_130 | 1/BA/1720:1724, 1/BA/1736:1740 | Triple sheared Not in a motif group | homologous IL_5J7L_310 IL_56467.8 | |
| IL_4U26_131 | 1/BA/1727:1728, 1/BA/1731:1733 | Single bulged C Not in a motif group | geometric IL_5J7L_311 IL_61258.12 | |
| IL_4U26_132 | 1/BA/1770:1771, 1/BA/1980:1982 | Single bulged A Not in a motif group | homologous IL_5J7L_312 IL_37497.2 | |
| IL_4U26_133 | 1/BA/1798:1804, 1/BA/1813:1821 | Kink-turn related Not in a motif group | homologous IL_5J7L_313 IL_17069.3 | |
| IL_4U26_134 | 1/BA/1837:1840, 1/BA/1902:1903 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_314 IL_88739.1 | |
| IL_4U26_135 | 1/BA/1841:1842, 1/BA/1898:1901 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_315 IL_16396.2 | |
| IL_4U26_136 | 1/BA/1846:1849, 1/BA/1893:1894 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_316 IL_09061.6 | |
| IL_4U26_137 | 1/BA/1864:1867, 1/BA/1874:1878 | UAA/GAN related Not in a motif group | homologous IL_5J7L_317 IL_77691.1 | |
| IL_4U26_138 | 1/BA/1933:1934, 1/BA/1964:1967 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_076 IL_59677.2 | |
| IL_4U26_139 | 1/BA/1934:1945, 1/BA/1961:1964 | No text annotation Not in a motif group | geometric IL_7A0S_072 IL_81589.2 | |
| IL_4U26_140 | 1/BA/2050:2052, 1/BA/2617:2618 | Major groove platform Not in a motif group | homologous IL_5J7L_320 IL_27635.1 | |
| IL_4U26_141 | 1/BA/2054:2056, 1/BA/2612:2615 | No text annotation Not in a motif group | ||
| IL_4U26_142 | 1/BA/2067:2069, 1/BA/2442:2443 | Single bulged U Not in a motif group | homologous IL_7A0S_075 IL_83039.13 | |
| IL_4U26_143 | 1/BA/2070:2071, 1/BA/2438:2441 | Minor groove platform Not in a motif group | homologous IL_5J7L_324 IL_42622.2 | |
| IL_4U26_144 | 1/BA/2081:2083, 1/BA/2236:2239 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_5J7L_325 IL_38958.7 | |
| IL_4U26_145 | 1/BA/2085:2087, 1/BA/2232:2234 | No text annotation Not in a motif group | homologous IL_5J7L_326 IL_95997.1 | |
| IL_4U26_146 | 1/BA/2202:2204, 1/BA/2220:2221 | Single bulged U Not in a motif group | homologous IL_5J7L_331 IL_83039.13 | |
| IL_4U26_147 | 1/BA/2350:2353, 1/BA/2364:2367 | Double sheared Not in a motif group | homologous IL_5J7L_333 IL_09705.9 | |
| IL_4U26_148 | 1/BA/2401:2403, 1/BA/2414:2415 | Single bulged U Not in a motif group | geometric IL_5LYS_008 IL_83039.13 | |
| IL_4U26_149 | 1/BA/2453:2454, 1/BA/2498:2500 | Single stack bend Not in a motif group | geometric IL_4WF9_089 IL_76488.2 | |
| IL_4U26_150 | 1/BA/2454:2455, 1/BA/2496:2498 | Major groove platform Not in a motif group | homologous IL_4WF9_090 IL_27635.1 | |
| IL_4U26_151 | 1/BA/2457:2459, 1/BA/2493:2494 | Major groove platform Not in a motif group | homologous IL_4WF9_091 IL_27635.1 | |
| IL_4U26_152 | 1/BA/2459:2461, 1/BA/2489:2493 | Major groove minor groove platform with extra cWW Not in a motif group | geometric IL_5J7L_337 IL_92788.2 | |
| IL_4U26_153 | 1/BA/2466:2470, 1/BA/2480:2484 | Triple sheared Not in a motif group | homologous IL_5J7L_338 IL_56467.8 | |
| IL_4U26_154 | 1/BA/2507:2508, 1/BA/2580:2582 | Major groove platform Not in a motif group | homologous IL_7RQB_096 IL_76223.2 | |
| IL_4U26_155 | 1/BA/2510:2512, 1/BA/2574:2578 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5J7L_340 IL_90933.2 | |
| IL_4U26_156 | 1/BA/2512:2513, 1/BA/2571:2574 | No text annotation Not in a motif group | geometric IL_5J7L_341 IL_71530.2 | |
| IL_4U26_157 | 1/BA/2522:2523, 1/BA/2540:2543 | Minor groove platform with intercalation Not in a motif group | homologous IL_5J7L_342 IL_95601.3 | |
| IL_4U26_158 | 1/BA/2591:2592, 1/BA/2601:2603 | Single bulged A Not in a motif group | homologous IL_5J7L_344 IL_37497.2 | |
| IL_4U26_159 | 1/BA/2636:2640, 1/BA/2774:2782 | No text annotation Not in a motif group | homologous IL_5J7L_345 IL_04638.1 | |
| IL_4U26_160 | 1/BA/2652:2658, 1/BA/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | homologous IL_5J7L_346 IL_16458.1 | |
| IL_4U26_161 | 1/BA/2680:2684, 1/BA/2725:2727 | C-loop Not in a motif group | homologous IL_5J7L_347 IL_63596.6 | |
| IL_4U26_162 | 1/BA/2687:2691, 1/BA/2718:2722 | No text annotation Not in a motif group | homologous IL_5J7L_348 IL_08296.3 | |
| IL_4U26_163 | 1/BA/2695:2696, 1/BA/2711:2714 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_349 IL_71530.2 | |
| IL_4U26_164 | 1/BA/2737:2742, 1/BA/2762:2767 | UAA/GAN with extra cWW Not in a motif group | homologous IL_5J7L_350 IL_49767.5 | |
| IL_4U26_165 | 1/BA/2795:2796, 1/BA/2799:2801 | Single bulged A Not in a motif group | geometric IL_7RQB_019 IL_37497.2 | |
| IL_4U26_166 | 1/BA/2806:2811, 1/BA/2889:2892 | No text annotation Not in a motif group | geometric IL_5J7L_351 IL_49460.2 | |
| IL_4U26_167 | 1/BA/2838:2839, 1/BA/2878:2880 | Major groove intercalation Not in a motif group | homologous IL_5J7L_352 IL_16396.2 | |
| IL_4U26_168 | 1/BA/2843:2846, 1/BA/2870:2874 | Multiple bulged bases with non-canonical cWW Not in a motif group | homologous IL_5J7L_353 IL_58764.3 | |
| IL_4U26_169 | 1/BA/2847:2852, 1/BA/2865:2869 | No text annotation Not in a motif group | homologous IL_5J7L_354 IL_83162.5 | |
| IL_4U26_170 | 1/BB/17:18, 1/BB/65:67 | Major groove intercalation Not in a motif group | homologous IL_5J7L_355 IL_37497.2 | |
| IL_4U26_171 | 1/BB/23:28, 1/BB/56:60 | No text annotation Not in a motif group | homologous IL_5J7L_356 IL_18472.2 | |
| IL_4U26_172 | 1/BB/30:31, 1/BB/51:54 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_357 IL_09061.6 | |
| IL_4U26_173 | 1/BB/34:38, 1/BB/44:48 | Symmetric double minor groove platform Not in a motif group | homologous IL_5J7L_358 IL_58103.6 | |
| IL_4U26_174 | 1/BB/71:79, 1/BB/97:105 | Bacterial 5S Loop E Not in a motif group | homologous IL_5J7L_359 IL_56455.3 | |
| IL_4U26_175 | 1/CA/30:32, 1/CA/552:553 | Single bulged G Not in a motif group | homologous IL_5J7L_001 IL_00225.2 | |
| IL_4U26_176 | 1/CA/44:45, 1/CA/396:398 | Single bulged A Not in a motif group | homologous IL_5J7L_002 IL_37497.2 | |
| IL_4U26_177 | 1/CA/47:52, 1/CA/359:361 | No text annotation Not in a motif group | geometric IL_5J7L_003 IL_11178.1 | |
| IL_4U26_178 | 1/CA/54:56, 1/CA/356:357 | Minor groove platform Not in a motif group | homologous IL_5J7L_004 IL_93353.1 | |
| IL_4U26_179 | 1/CA/63:66, 1/CA/103:104 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_005 IL_76389.1 | |
| IL_4U26_180 | 1/CA/67:69, 1/CA/99:102 | Minor groove platform with extra cWW Not in a motif group | homologous IL_5J7L_006 IL_65006.1 | |
| IL_4U26_181 | 1/CA/70:73, 1/CA/97:98 | Minor groove platform Not in a motif group | homologous IL_5J7L_007 IL_15052.1 | |
| IL_4U26_182 | 1/CA/75:76, 1/CA/93:95 | Single bulged G Not in a motif group | geometric IL_7A0S_099 IL_00225.2 | |
| IL_4U26_183 | 1/CA/128:131, 1/CA/231:233 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5J7L_009 IL_82068.2 | |
| IL_4U26_184 | 1/CA/132:136, 1/CA/227:230 | Minor groove platform related Not in a motif group | homologous IL_5J7L_010 IL_58764.3 | |
| IL_4U26_185 | 1/CA/144:146, 1/CA/176:178 | Isolated cWH basepair Not in a motif group | homologous IL_5J7L_011 IL_51629.2 | |
| IL_4U26_186 | 1/CA/147:153, 1/CA/168:175 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_5J7L_012 IL_80604.2 | |
| IL_4U26_187 | 1/CA/242:247, 1/CA/277:284 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_5J7L_014 IL_45067.2 | |
| IL_4U26_188 | 1/CA/249:252, 1/CA/274:275 | No text annotation Not in a motif group | homologous IL_5J7L_015 IL_48100.2 | |
| IL_4U26_189 | 1/CA/292:293, 1/CA/304:308 | C-loop Not in a motif group | homologous IL_6CZR_125 IL_37712.2 | |
| IL_4U26_190 | 1/CA/320:322, 1/CA/332:333 | Single stack bend Not in a motif group | geometric IL_4C7O_002 IL_76488.2 | |
| IL_4U26_191 | 1/CA/367:369, 1/CA/392:393 | Single bulged U Not in a motif group | geometric IL_5J7L_017 IL_83039.13 | |
| IL_4U26_192 | 1/CA/371:375, 1/CA/389:390 | C-loop Not in a motif group | homologous IL_5J7L_018 IL_75255.1 | |
| IL_4U26_193 | 1/CA/375:376, 1/CA/387:389 | Single bulged G Not in a motif group | geometric IL_5J7L_019 IL_00225.2 | |
| IL_4U26_194 | 1/CA/409:416, 1/CA/427:433 | No text annotation Not in a motif group | homologous IL_5J7L_020 IL_28026.1 | |
| IL_4U26_195 | 1/CA/440:442, 1/CA/492:497 | No text annotation Not in a motif group | homologous IL_5J7L_021 IL_22248.1 | |
| IL_4U26_196 | 1/CA/446:450, 1/CA/483:488 | tSH-tHW-tWW Not in a motif group | homologous IL_5J7L_022 IL_88269.3 | |
| IL_4U26_197 | 1/CA/450:453, 1/CA/479:483 | No text annotation Not in a motif group | ||
| IL_4U26_198 | 1/CA/453:455, 1/CA/477:479 | No text annotation Not in a motif group | geometric IL_5TBW_127 IL_95997.1 | |
| IL_4U26_199 | 1/CA/504:511, 1/CA/540:541 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5J7L_024 IL_15861.7 | |
| IL_4U26_200 | 1/CA/515:521, 1/CA/528:536 | No text annotation Not in a motif group | geometric IL_4V88_415 IL_55871.1 | |
| IL_4U26_201 | 1/CA/569:575, 1/CA/880:881 | No text annotation Not in a motif group | homologous IL_5J7L_026 IL_69996.1 | |
| IL_4U26_202 | 1/CA/580:584, 1/CA/757:761 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_027 IL_17136.1 | |
| IL_4U26_203 | 1/CA/594:596, 1/CA/644:645 | Major groove platform Not in a motif group | homologous IL_5J7L_028 IL_27635.1 | |
| IL_4U26_204 | 1/CA/597:598, 1/CA/640:643 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_029 IL_09061.6 | |
| IL_4U26_205 | 1/CA/605:612, 1/CA/628:633 | No text annotation Not in a motif group | homologous IL_5J7L_030 IL_78349.1 | |
| IL_4U26_206 | 1/CA/654:655, 1/CA/751:754 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4LFB_027 IL_50694.2 | |
| IL_4U26_207 | 1/CA/658:659, 1/CA/746:748 | Single stack bend Not in a motif group | homologous IL_5J7L_032 IL_76488.2 | |
| IL_4U26_208 | 1/CA/662:666, 1/CA/740:743 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_033 IL_71110.1 | |
| IL_4U26_209 | 1/CA/684:688, 1/CA/699:706 | Kink-turn Not in a motif group | homologous IL_5J7L_035 IL_45067.2 | |
| IL_4U26_210 | 1/CA/774:778, 1/CA/804:805 | Left turn Not in a motif group | homologous IL_5J7L_036 IL_29346.1 | |
| IL_4U26_211 | 1/CA/779:783, 1/CA/799:803 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_037 IL_17136.1 | |
| IL_4U26_212 | 1/CA/887:894, 1/CA/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_5J7L_038 IL_24606.2 | |
| IL_4U26_213 | 1/CA/922:923, 1/CA/1393:1395 | Single bulged A Not in a motif group | homologous IL_5J7L_039 IL_37497.2 | |
| IL_4U26_214 | 1/CA/925:927, 1/CA/1390:1391 | Single bulged G Not in a motif group | homologous IL_5J7L_040 IL_00225.2 | |
| IL_4U26_215 | 1/CA/933:935, 1/CA/1380:1384 | Minor groove platform Not in a motif group | homologous IL_5J7L_041 IL_47078.1 | |
| IL_4U26_216 | 1/CA/953:954, 1/CA/1226:1228 | No text annotation Not in a motif group | homologous IL_6CZR_150 NA | |
| IL_4U26_217 | 1/CA/993:999, 1/CA/1041:1045 | No text annotation Not in a motif group | ||
| IL_4U26_218 | 1/CA/1003:1009, 1/CA/1020:1037 | No text annotation Not in a motif group | ||
| IL_4U26_219 | 1/CA/1048:1050, 1/CA/1208:1209 | No text annotation Not in a motif group | homologous IL_6CZR_152 NA | |
| IL_4U26_220 | 1/CA/1051:1056, 1/CA/1204:1207 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_473 IL_30621.2 | |
| IL_4U26_221 | 1/CA/1057:1058, 1/CA/1199:1203 | Minor groove platform Not in a motif group | homologous IL_5J7L_048 IL_93353.1 | |
| IL_4U26_222 | 1/CA/1060:1061, 1/CA/1195:1197 | Single bulged A Not in a motif group | homologous IL_5J7L_049 IL_37497.2 | |
| IL_4U26_223 | 1/CA/1061:1063, 1/CA/1193:1195 | No text annotation Not in a motif group | geometric IL_4LFB_047 IL_95997.1 | |
| IL_4U26_224 | 1/CA/1124:1128, 1/CA/1144:1149 | No text annotation Not in a motif group | homologous IL_5J7L_051 IL_93211.1 | |
| IL_4U26_225 | 1/CA/1129:1133, 1/CA/1141:1143 | No text annotation Not in a motif group | ||
| IL_4U26_226 | 1/CA/1158:1162, 1/CA/1174:1181 | No text annotation Not in a motif group | ||
| IL_4U26_227 | 1/CA/1247:1253, 1/CA/1284:1290 | No text annotation Not in a motif group | homologous IL_5J7L_054 IL_09129.1 | |
| IL_4U26_228 | 1/CA/1255:1258, 1/CA/1277:1282 | No text annotation Not in a motif group | homologous IL_5J7L_055 IL_75461.4 | |
| IL_4U26_229 | 1/CA/1259:1263, 1/CA/1272:1276 | Triple sheared Not in a motif group | homologous IL_5J7L_056 IL_56467.8 | |
| IL_4U26_230 | 1/CA/1303:1309, 1/CA/1328:1334 | No text annotation Not in a motif group | ||
| IL_4U26_231 | 1/CA/1399:1401, 1/CA/1501:1504 | No text annotation Not in a motif group | homologous IL_5J7L_058 IL_36143.3 | |
| IL_4U26_232 | 1/CA/1401:1404, 1/CA/1497:1501 | No text annotation Not in a motif group | ||
| IL_4U26_233 | 1/CA/1405:1407, 1/CA/1494:1496 | No text annotation Not in a motif group | geometric IL_4V9F_017 IL_95997.1 | |
| IL_4U26_234 | 1/CA/1407:1409, 1/CA/1491:1494 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5J7L_009 IL_82068.2 | |
| IL_4U26_235 | 1/CA/1412:1414, 1/CA/1486:1488 | No text annotation Not in a motif group | homologous IL_5J7L_061 IL_95997.1 | |
| IL_4U26_236 | 1/CA/1416:1419, 1/CA/1481:1484 | Double sheared Not in a motif group | homologous IL_5J7L_062 IL_09705.9 | |
| IL_4U26_237 | 1/CA/1430:1435, 1/CA/1466:1470 | Triple sheared related Not in a motif group | homologous IL_5J7L_063 IL_64879.2 | |
| IL_4U26_238 | 1/CA/1440:1442, 1/CA/1460:1461 | Minor groove platform Not in a motif group | homologous IL_5J7L_064 IL_42622.2 | |
| IL_4U26_239 | 1/CA/1445:1448, 1/CA/1455:1457 | No text annotation Not in a motif group | homologous IL_5J7L_065 IL_02284.5 | |
| IL_4U26_240 | 1/DA/24:30, 1/DA/510:516 | Triple sheared with non-canonical cWW Not in a motif group | geometric IL_4WF9_001 IL_66414.6 | |
| IL_4U26_241 | 1/DA/36:37, 1/DA/442:444 | Single bulged A Not in a motif group | homologous IL_7RQB_002 IL_37497.2 | |
| IL_4U26_242 | 1/DA/43:44, 1/DA/434:436 | Minor groove platform Not in a motif group | homologous IL_5J7L_247 IL_42622.2 | |
| IL_4U26_243 | 1/DA/80:85, 1/DA/97:106 | No text annotation Not in a motif group | ||
| IL_4U26_244 | 1/DA/188:194, 1/DA/201:208 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_250 IL_04346.7 | |
| IL_4U26_245 | 1/DA/239:245, 1/DA/253:258 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_251 IL_76042.2 | |
| IL_4U26_246 | 1/DA/269:271, 1/DA/366:370 | No text annotation Not in a motif group | homologous IL_5J7L_252 IL_47972.1 | |
| IL_4U26_247 | 1/DA/274:281, 1/DA/359:363 | No text annotation Not in a motif group | homologous IL_5J7L_253 IL_77870.1 | |
| IL_4U26_248 | 1/DA/293:295, 1/DA/343:347 | No text annotation Not in a motif group | homologous IL_5J7L_254 IL_69440.1 | |
| IL_4U26_249 | 1/DA/481:485, 1/DA/495:509 | No text annotation Not in a motif group | geometric IL_4V9F_014 IL_31504.1 | |
| IL_4U26_250 | 1/DA/536:539, 1/DA/554:557 | Double sheared Not in a motif group | homologous IL_5J7L_256 IL_09705.9 | |
| IL_4U26_251 | 1/DA/564:566, 1/DA/575:577 | No text annotation Not in a motif group | homologous IL_5J7L_257 IL_95997.1 | |
| IL_4U26_252 | 1/DA/606:611, 1/DA/617:622 | No text annotation Not in a motif group | ||
| IL_4U26_253 | 1/DA/672:674, 1/DA/806:808 | No text annotation Not in a motif group | geometric IL_7RQB_017 IL_95997.1 | |
| IL_4U26_254 | 1/DA/674:678, 1/DA/799:806 | tHW-tHW cross-strand stack Not in a motif group | homologous IL_5J7L_260 IL_17470.6 | |
| IL_4U26_255 | 1/DA/697:698, 1/DA/763:765 | Single bulged A Not in a motif group | geometric IL_4WF9_022 IL_37497.2 | |
| IL_4U26_256 | 1/DA/702:703, 1/DA/728:730 | Single bulged G Not in a motif group | geometric IL_5J7L_262 IL_00225.2 | |
| IL_4U26_257 | 1/DA/703:707, 1/DA/724:728 | Triple sheared Not in a motif group | homologous IL_7RQB_021 IL_56467.8 | |
| IL_4U26_258 | 1/DA/738:740, 1/DA/757:758 | Major groove platform Not in a motif group | homologous IL_5J7L_264 IL_27635.1 | |
| IL_4U26_259 | 1/DA/775:777, 1/DA/787:791 | Multiple bulged bases Not in a motif group | geometric IL_7RQB_023 IL_90991.6 | |
| IL_4U26_260 | 1/DA/837:838, 1/DA/940:942 | Single stack bend Not in a motif group | homologous IL_7RQB_024 IL_92001.1 | |
| IL_4U26_261 | 1/DA/844:847, 1/DA/933:934 | Other IL Not in a motif group | geometric IL_5J7L_267 IL_92001.1 | |
| IL_4U26_262 | 1/DA/847:848, 1/DA/930:933 | Stack outside cWW Not in a motif group | homologous IL_5J7L_268 IL_37629.1 | |
| IL_4U26_263 | 1/DA/850:851, 1/DA/926:928 | Single stack bend Not in a motif group | homologous IL_5J7L_269 IL_76488.2 | |
| IL_4U26_264 | 1/DA/856:862, 1/DA/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | homologous IL_5J7L_270 IL_93830.3 | |
| IL_4U26_265 | 1/DA/862:863, 1/DA/913:915 | Single bulged G Not in a motif group | geometric IL_5J7L_271 IL_00225.2 | |
| IL_4U26_266 | 1/DA/864:868, 1/DA/909:912 | C-loop Not in a motif group | homologous IL_5J7L_272 IL_63596.6 | |
| IL_4U26_267 | 1/DA/870:872, 1/DA/905:907 | No text annotation Not in a motif group | homologous IL_5J7L_273 IL_95997.1 | |
| IL_4U26_270 | 1/DA/994:996, 1/DA/1159:1160 | Single bulged C Not in a motif group | homologous IL_5J7L_276 IL_61258.12 | |
| IL_4U26_271 | 1/DA/998:1002, 1/DA/1153:1157 | UAA/GAN Not in a motif group | homologous IL_5J7L_277 IL_89002.2 | |
| IL_4U26_272 | 1/DA/1004:1011, 1/DA/1150:1151 | SSU/LSU pseudoknot Not in a motif group | geometric IL_5J7L_278 IL_15861.7 | |
| IL_4U26_273 | 1/DA/1011:1013, 1/DA/1149:1150 | Single bulged U Not in a motif group | homologous IL_5J7L_279 IL_83039.13 | |
| IL_4U26_274 | 1/DA/1018:1024, 1/DA/1140:1144 | No text annotation Not in a motif group | geometric IL_4WF9_039 IL_57188.3 | |
| IL_4U26_275 | 1/DA/1024:1030, 1/DA/1124:1140 | No text annotation Not in a motif group | geometric IL_5J7L_281 IL_50715.1 | |
| IL_4U26_276 | 1/DA/1031:1034, 1/DA/1121:1123 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5J7L_282 IL_82068.2 | |
| IL_4U26_277 | 1/DA/1038:1041, 1/DA/1114:1117 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_283 IL_30621.2 | |
| IL_4U26_278 | 1/DA/1043:1051, 1/DA/1108:1112 | Kink-turn Not in a motif group | homologous IL_5J7L_284 IL_90538.4 | |
| IL_4U26_279 | 1/DA/1196:1198, 1/DA/1247:1250 | Isolated cWS basepair Not in a motif group | homologous IL_5J7L_286 IL_52767.2 | |
| IL_4U26_280 | 1/DA/1202:1206, 1/DA/1240:1243 | No text annotation Not in a motif group | homologous IL_5J7L_287 IL_91920.1 | |
| IL_4U26_281 | 1/DA/1208:1215, 1/DA/1234:1238 | Kink-turn Not in a motif group | homologous IL_5J7L_288 IL_70923.2 | |
| IL_4U26_282 | 1/DA/1262:1270, 1/DA/2010:2017 | No text annotation Not in a motif group | ||
| IL_4U26_283 | 1/DA/1310:1313, 1/DA/1603:1604 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4WF9_049 IL_50694.2 | |
| IL_4U26_284 | 1/DA/1319:1323, 1/DA/1331:1333 | C-loop Not in a motif group | homologous IL_5J7L_291 IL_63596.6 | |
| IL_4U26_285 | 1/DA/1351:1355, 1/DA/1376:1380 | UAA/GAN Not in a motif group | homologous IL_5J7L_292 IL_89002.2 | |
| IL_4U26_286 | 1/DA/1357:1361, 1/DA/1370:1374 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_293 IL_17136.1 | |
| IL_4U26_287 | 1/DA/1415:1416, 1/DA/1582:1587 | No text annotation Not in a motif group | homologous IL_5J7L_294 IL_90348.1 | |
| IL_4U26_288 | 1/DA/1417:1421, 1/DA/1577:1581 | UAA/GAN Not in a motif group | homologous IL_5J7L_295 IL_89002.2 | |
| IL_4U26_289 | 1/DA/1432:1435, 1/DA/1557:1561 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_296 IL_55178.1 | |
| IL_4U26_290 | 1/DA/1437:1440, 1/DA/1551:1555 | tSH-tHW Not in a motif group | homologous IL_5J7L_297 IL_04059.1 | |
| IL_4U26_291 | 1/DA/1450:1451, 1/DA/1459:1461 | Single bulged U Not in a motif group | geometric IL_5J7L_298 IL_83039.13 | |
| IL_4U26_292 | 1/DA/1468:1471, 1/DA/1520:1524 | No text annotation Not in a motif group | homologous IL_5J7L_299 IL_68574.2 | |
| IL_4U26_293 | 1/DA/1474:1478, 1/DA/1513:1517 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_300 IL_38862.1 | |
| IL_4U26_294 | 1/DA/1481:1482, 1/DA/1507:1510 | No text annotation Not in a motif group | homologous IL_5J7L_301 IL_67474.4 | |
| IL_4U26_295 | 1/DA/1489:1491, 1/DA/1499:1500 | Single bulged A Not in a motif group | homologous IL_5J7L_302 IL_37497.2 | |
| IL_4U26_296 | 1/DA/1526:1529, 1/DA/1542:1546 | UAA/GAN variation Not in a motif group | homologous IL_5J7L_303 IL_07235.1 | |
| IL_4U26_297 | 1/DA/1651:1656, 1/DA/2004:2006 | No text annotation Not in a motif group | homologous IL_7RQB_064 IL_12566.2 | |
| IL_4U26_298 | 1/DA/1663:1665, 1/DA/1995:1997 | Isolated tWW turn Not in a motif group | homologous IL_5J7L_305 IL_54997.7 | |
| IL_4U26_299 | 1/DA/1666:1669, 1/DA/1993:1994 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_5J7L_306 IL_50694.2 | |
| IL_4U26_300 | 1/DA/1669:1674, 1/DA/1990:1993 | Intercalated tWH Not in a motif group | homologous IL_5J7L_307 IL_82842.2 | |
| IL_4U26_301 | 1/DA/1686:1691, 1/DA/1696:1702 | tSH-tSH-tHH-tHS Not in a motif group | geometric IL_7RQB_068 IL_65969.2 | |
| IL_4U26_302 | 1/DA/1712:1718, 1/DA/1742:1746 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_309 IL_88269.3 | |
| IL_4U26_303 | 1/DA/1720:1724, 1/DA/1736:1740 | Triple sheared Not in a motif group | homologous IL_5J7L_310 IL_56467.8 | |
| IL_4U26_304 | 1/DA/1770:1771, 1/DA/1980:1982 | Single bulged A Not in a motif group | homologous IL_5J7L_312 IL_37497.2 | |
| IL_4U26_305 | 1/DA/1798:1804, 1/DA/1813:1821 | Kink-turn related Not in a motif group | homologous IL_5J7L_313 IL_17069.3 | |
| IL_4U26_306 | 1/DA/1837:1840, 1/DA/1902:1903 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_7RQB_071 IL_88739.1 | |
| IL_4U26_307 | 1/DA/1841:1842, 1/DA/1898:1901 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_315 IL_16396.2 | |
| IL_4U26_309 | 1/DA/1864:1867, 1/DA/1874:1878 | UAA/GAN related Not in a motif group | homologous IL_5J7L_317 IL_77691.1 | |
| IL_4U26_310 | 1/DA/1933:1934, 1/DA/1964:1967 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_076 IL_59677.2 | |
| IL_4U26_311 | 1/DA/1934:1945, 1/DA/1961:1964 | No text annotation Not in a motif group | geometric IL_4WF9_077 IL_81589.2 | |
| IL_4U26_312 | 1/DA/2050:2052, 1/DA/2617:2618 | Major groove platform Not in a motif group | homologous IL_5J7L_320 IL_27635.1 | |
| IL_4U26_313 | 1/DA/2054:2057, 1/DA/2611:2615 | No text annotation Not in a motif group | ||
| IL_4U26_314 | 1/DA/2067:2069, 1/DA/2442:2443 | Single bulged U Not in a motif group | homologous IL_7A0S_075 IL_83039.13 | |
| IL_4U26_315 | 1/DA/2070:2071, 1/DA/2438:2441 | Minor groove platform Not in a motif group | homologous IL_5J7L_324 IL_42622.2 | |
| IL_4U26_316 | 1/DA/2081:2084, 1/DA/2235:2239 | No text annotation Not in a motif group | ||
| IL_4U26_317 | 1/DA/2085:2087, 1/DA/2232:2234 | No text annotation Not in a motif group | homologous IL_5J7L_326 IL_95997.1 | |
| IL_4U26_318 | 1/DA/2103:2105, 1/DA/2184:2186 | No text annotation Not in a motif group | geometric IL_4KYY_002 IL_51629.2 | |
| IL_4U26_319 | 1/DA/2108:2110, 1/DA/2179:2181 | No text annotation Not in a motif group | homologous IL_3U4M_001 IL_95997.1 | |
| IL_4U26_323 | 1/DA/2202:2204, 1/DA/2220:2221 | Single bulged U Not in a motif group | homologous IL_5J7L_331 IL_83039.13 | |
| IL_4U26_324 | 1/DA/2350:2353, 1/DA/2364:2367 | Double sheared Not in a motif group | homologous IL_5J7L_333 IL_09705.9 | |
| IL_4U26_325 | 1/DA/2401:2403, 1/DA/2414:2415 | No text annotation Not in a motif group | ||
| IL_4U26_326 | 1/DA/2453:2454, 1/DA/2498:2500 | Single stack bend Not in a motif group | geometric IL_4WF9_089 IL_76488.2 | |
| IL_4U26_327 | 1/DA/2454:2455, 1/DA/2496:2498 | Major groove platform Not in a motif group | homologous IL_7RQB_092 IL_27635.1 | |
| IL_4U26_328 | 1/DA/2457:2459, 1/DA/2493:2494 | Major groove platform Not in a motif group | geometric IL_4WF9_091 IL_27635.1 | |
| IL_4U26_329 | 1/DA/2459:2461, 1/DA/2489:2493 | Major groove minor groove platform with extra cWW Not in a motif group | homologous IL_5J7L_337 IL_92788.2 | |
| IL_4U26_330 | 1/DA/2466:2470, 1/DA/2480:2484 | Triple sheared Not in a motif group | homologous IL_5J7L_338 IL_56467.8 | |
| IL_4U26_331 | 1/DA/2507:2508, 1/DA/2580:2582 | Major groove platform Not in a motif group | homologous IL_7RQB_096 IL_76223.2 | |
| IL_4U26_332 | 1/DA/2510:2512, 1/DA/2574:2578 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5J7L_340 IL_90933.2 | |
| IL_4U26_333 | 1/DA/2512:2513, 1/DA/2571:2574 | No text annotation Not in a motif group | geometric IL_5J7L_341 IL_71530.2 | |
| IL_4U26_334 | 1/DA/2522:2523, 1/DA/2540:2543 | Minor groove platform with intercalation Not in a motif group | homologous IL_7RQB_099 IL_95601.3 | |
| IL_4U26_335 | 1/DA/2591:2592, 1/DA/2601:2603 | Single bulged A Not in a motif group | homologous IL_5J7L_344 IL_37497.2 | |
| IL_4U26_336 | 1/DA/2636:2640, 1/DA/2774:2782 | No text annotation Not in a motif group | homologous IL_5J7L_345 IL_04638.1 | |
| IL_4U26_337 | 1/DA/2652:2658, 1/DA/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | geometric IL_5J7L_346 IL_16458.1 | |
| IL_4U26_338 | 1/DA/2680:2684, 1/DA/2725:2727 | C-loop Not in a motif group | homologous IL_5J7L_347 IL_63596.6 | |
| IL_4U26_339 | 1/DA/2687:2691, 1/DA/2718:2722 | No text annotation Not in a motif group | ||
| IL_4U26_340 | 1/DA/2695:2696, 1/DA/2711:2714 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_349 IL_71530.2 | |
| IL_4U26_341 | 1/DA/2737:2742, 1/DA/2762:2767 | UAA/GAN with extra cWW Not in a motif group | homologous IL_5J7L_350 IL_49767.5 | |
| IL_4U26_342 | 1/DA/2806:2811, 1/DA/2889:2892 | No text annotation Not in a motif group | homologous IL_5J7L_351 IL_49460.2 | |
| IL_4U26_343 | 1/DA/2838:2839, 1/DA/2878:2880 | Major groove intercalation Not in a motif group | homologous IL_5J7L_352 IL_16396.2 | |
| IL_4U26_344 | 1/DA/2843:2846, 1/DA/2870:2874 | Multiple bulged bases with non-canonical cWW Not in a motif group | homologous IL_5J7L_353 IL_58764.3 | |
| IL_4U26_345 | 1/DA/2847:2852, 1/DA/2865:2869 | No text annotation Not in a motif group | homologous IL_7RQB_110 IL_83162.5 | |
| IL_4U26_346 | 1/DB/17:18, 1/DB/65:67 | Major groove intercalation Not in a motif group | homologous IL_5J7L_355 IL_37497.2 | |
| IL_4U26_347 | 1/DB/23:28, 1/DB/56:60 | No text annotation Not in a motif group | homologous IL_5J7L_356 IL_18472.2 | |
| IL_4U26_348 | 1/DB/30:32, 1/DB/50:54 | No text annotation Not in a motif group | homologous IL_4WF9_114 IL_10810.1 | |
| IL_4U26_349 | 1/DB/34:38, 1/DB/44:48 | Symmetric double minor groove platform Not in a motif group | geometric IL_5J7L_358 IL_58103.6 | |
| IL_4U26_350 | 1/DB/71:79, 1/DB/97:105 | Bacterial 5S Loop E Not in a motif group | homologous IL_5J7L_359 IL_56455.3 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4U26_103 | Kink-turn | ||
| IL_4U26_268 | Triple sheared | ||
| IL_4U26_269 | No text annotation | ||
| IL_4U26_308 | Major groove minor groove platform; mini C-loop | ||
| IL_4U26_320 | No text annotation | ||
| IL_4U26_321 | No text annotation | ||
| IL_4U26_322 | Kink-turn |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_4U26_001 | 1/AA/46:47, 1/AA/361:367, 1/AA/393:395 | No text annotation Not in a motif group | ||
| J3_4U26_002 | 1/AA/586:588, 1/AA/651:654, 1/AA/754:755 | No text annotation Not in a motif group | homologous J3_5J7L_002 NA | |
| J3_4U26_003 | 1/AA/826:829, 1/AA/857:861, 1/AA/868:874 | No text annotation Not in a motif group | homologous J3_5J7L_004 NA | |
| J3_4U26_004 | 1/AA/936:939, 1/AA/1344:1350, 1/AA/1372:1379 | No text annotation Not in a motif group | homologous J3_4LFB_002 NA | |
| J3_4U26_005 | 1/AA/943:946, 1/AA/1235:1237, 1/AA/1337:1340 | No text annotation Not in a motif group | ||
| J3_4U26_006 | 1/AA/955:962, 1/AA/973:985, 1/AA/1220:1225 | No text annotation Not in a motif group | ||
| J3_4U26_007 | 1/AA/990:993, 1/AA/1045:1047, 1/AA/1210:1215 | No text annotation Not in a motif group | homologous J3_5J7L_007 NA | |
| J3_4U26_008 | 1/AA/1063:1068, 1/AA/1107:1113, 1/AA/1187:1193 | No text annotation Not in a motif group | ||
| J3_4U26_009 | 1/AA/1073:1074, 1/AA/1083:1087, 1/AA/1098:1102 | No text annotation Not in a motif group | homologous J3_5J7L_009 NA | |
| J3_4U26_010 | 1/AA/1116:1118, 1/AA/1155:1158, 1/AA/1181:1184 | No text annotation Not in a motif group | homologous J3_5J7L_010 NA | |
| J3_4U26_011 | 1/AA/1237:1241, 1/AA/1296:1303, 1/AA/1334:1337 | No text annotation Not in a motif group | homologous J3_5J7L_011 NA | |
| J3_4U26_012 | 1/BA/30:31, 1/BA/474:481, 1/BA/509:510 | No text annotation Not in a motif group | homologous J3_5J7L_036 NA | |
| J3_4U26_013 | 1/BA/56:57, 1/BA/70:76, 1/BA/110:114 | No text annotation Not in a motif group | homologous J3_5J7L_037 NA | |
| J3_4U26_014 | 1/BA/683:689, 1/BA/773:775, 1/BA/791:794 | No text annotation Not in a motif group | ||
| J3_4U26_015 | 1/BA/698:700, 1/BA/732:736, 1/BA/760:763 | No text annotation Not in a motif group | ||
| J3_4U26_016 | 1/BA/1055:1058, 1/BA/1080:1087, 1/BA/1102:1104 | No text annotation Not in a motif group | ||
| J3_4U26_017 | 1/BA/1298:1303, 1/BA/1625:1627, 1/BA/1639:1642 | No text annotation Not in a motif group | homologous J3_5J7L_041 NA | |
| J3_4U26_018 | 1/BA/1306:1309, 1/BA/1605:1611, 1/BA/1620:1622 | No text annotation Not in a motif group | homologous J3_5J7L_042 NA | |
| J3_4U26_019 | 1/BA/1344:1349, 1/BA/1382:1385, 1/BA/1402:1403 | No text annotation Not in a motif group | homologous J3_5J7L_043 NA | |
| J3_4U26_020 | 1/BA/2091:2093, 1/BA/2196:2200, 1/BA/2223:2228 | No text annotation Not in a motif group | homologous J3_5J7L_044 NA | |
| J3_4U26_021 | 1/BA/2295:2299, 1/BA/2317:2323, 1/BA/2332:2337 | No text annotation Not in a motif group | ||
| J3_4U26_022 | 1/BA/2517:2520, 1/BA/2545:2547, 1/BA/2561:2567 | No text annotation Not in a motif group | homologous J3_5J7L_046 NA | |
| J3_4U26_023 | 1/BA/2789:2791, 1/BA/2805:2806, 1/BA/2892:2894 | No text annotation Not in a motif group | homologous J3_5J7L_047 NA | |
| J3_4U26_024 | 1/BA/2812:2815, 1/BA/2831:2836, 1/BA/2882:2888 | No text annotation Not in a motif group | homologous J3_5J7L_048 NA | |
| J3_4U26_025 | 1/BB/10:16, 1/BB/68:70, 1/BB/106:110 | No text annotation Not in a motif group | homologous J3_5J7L_049 NA | |
| J3_4U26_026 | 1/CA/46:47, 1/CA/361:367, 1/CA/393:395 | No text annotation Not in a motif group | homologous J3_5J7L_001 NA | |
| J3_4U26_027 | 1/CA/586:588, 1/CA/651:654, 1/CA/754:755 | No text annotation Not in a motif group | ||
| J3_4U26_028 | 1/CA/826:829, 1/CA/857:861, 1/CA/868:874 | No text annotation Not in a motif group | homologous J3_5J7L_004 NA | |
| J3_4U26_029 | 1/CA/936:939, 1/CA/1344:1350, 1/CA/1372:1379 | No text annotation Not in a motif group | homologous J3_4LFB_002 NA | |
| J3_4U26_030 | 1/CA/943:946, 1/CA/1235:1237, 1/CA/1337:1340 | No text annotation Not in a motif group | ||
| J3_4U26_031 | 1/CA/955:962, 1/CA/973:984, 1/CA/1221:1225 | No text annotation Not in a motif group | ||
| J3_4U26_032 | 1/CA/990:993, 1/CA/1045:1047, 1/CA/1210:1215 | No text annotation Not in a motif group | ||
| J3_4U26_033 | 1/CA/1063:1068, 1/CA/1107:1113, 1/CA/1187:1193 | No text annotation Not in a motif group | ||
| J3_4U26_034 | 1/CA/1073:1074, 1/CA/1083:1087, 1/CA/1098:1102 | No text annotation Not in a motif group | homologous J3_5J7L_009 NA | |
| J3_4U26_035 | 1/CA/1116:1118, 1/CA/1155:1158, 1/CA/1181:1184 | No text annotation Not in a motif group | ||
| J3_4U26_036 | 1/CA/1237:1241, 1/CA/1296:1303, 1/CA/1334:1337 | No text annotation Not in a motif group | homologous J3_5J7L_011 NA | |
| J3_4U26_037 | 1/DA/30:31, 1/DA/474:481, 1/DA/509:510 | No text annotation Not in a motif group | homologous J3_7RQB_001 NA | |
| J3_4U26_038 | 1/DA/55:57, 1/DA/70:76, 1/DA/110:115 | No text annotation Not in a motif group | ||
| J3_4U26_039 | 1/DA/682:689, 1/DA/773:775, 1/DA/791:795 | No text annotation Not in a motif group | ||
| J3_4U26_040 | 1/DA/698:700, 1/DA/732:736, 1/DA/760:763 | No text annotation Not in a motif group | homologous J3_5J7L_039 NA | |
| J3_4U26_041 | 1/DA/1055:1059, 1/DA/1079:1092, 1/DA/1099:1104 | No text annotation Not in a motif group | ||
| J3_4U26_042 | 1/DA/1298:1304, 1/DA/1624:1627, 1/DA/1639:1642 | No text annotation Not in a motif group | ||
| J3_4U26_043 | 1/DA/1306:1309, 1/DA/1605:1611, 1/DA/1620:1622 | No text annotation Not in a motif group | homologous J3_5J7L_042 NA | |
| J3_4U26_044 | 1/DA/2091:2093, 1/DA/2196:2200, 1/DA/2223:2228 | No text annotation Not in a motif group | homologous J3_5J7L_044 NA | |
| J3_4U26_045 | 1/DA/2295:2299, 1/DA/2317:2323, 1/DA/2332:2337 | No text annotation Not in a motif group | ||
| J3_4U26_046 | 1/DA/2517:2520, 1/DA/2545:2547, 1/DA/2561:2567 | No text annotation Not in a motif group | ||
| J3_4U26_047 | 1/DA/2789:2792, 1/DA/2804:2806, 1/DA/2892:2894 | No text annotation Not in a motif group | ||
| J3_4U26_048 | 1/DA/2812:2815, 1/DA/2831:2836, 1/DA/2882:2888 | No text annotation Not in a motif group | homologous J3_5J7L_048 NA | |
| J3_4U26_049 | 1/DB/10:16, 1/DB/68:70, 1/DB/106:110 | No text annotation Not in a motif group | homologous J3_5J7L_049 NA |
Problematic loops
No problematic loops
Coloring options: