5WFS Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5WFS_001 | 1/A/59:68 | No text annotation Not in a motif group | homologous HL_5J7L_134 HL_18177.1 | |
| HL_5WFS_002 | 1/A/87:95 | No text annotation Not in a motif group | homologous HL_5J7L_135 HL_84193.1 | |
| HL_5WFS_003 | 1/A/123:128 | No text annotation Not in a motif group | homologous HL_5J7L_136 HL_75407.1 | |
| HL_5WFS_004 | 1/A/136:143 | No text annotation Not in a motif group | ||
| HL_5WFS_005 | 1/A/158:168 | No text annotation Not in a motif group | homologous HL_5J7L_138 HL_81820.1 | |
| HL_5WFS_006 | 1/A/194:201 | No text annotation Not in a motif group | geometric HL_5J7L_139 HL_06192.2 | |
| HL_5WFS_007 | 1/A/225:230 | No text annotation Not in a motif group | homologous HL_5J7L_140 HL_27930.1 | |
| HL_5WFS_008 | 1/A/246:252 | No text annotation Not in a motif group | homologous HL_5J7L_141 HL_67216.7 | |
| HL_5WFS_009 | 1/A/305:312 | T-loop with 1 bulged base Not in a motif group | homologous HL_5J7L_142 HL_89380.2 | |
| HL_5WFS_010 | 1/A/327:335 | No text annotation Not in a motif group | homologous HL_5J7L_144 HL_08002.8 | |
| HL_5WFS_011 | 1/A/382:392 | No text annotation Not in a motif group | homologous HL_5J7L_145 HL_91503.4 | |
| HL_5WFS_012 | 1/A/410:417 | No text annotation Not in a motif group | homologous HL_5J7L_146 HL_96598.1 | |
| HL_5WFS_013 | 1/A/462:467 | No text annotation Not in a motif group | homologous HL_7RQB_015 HL_42097.1 | |
| HL_5WFS_014 | 1/A/487:493 | No text annotation Not in a motif group | homologous HL_5J7L_148 HL_42097.1 | |
| HL_5WFS_015 | 1/A/542:551 | No text annotation Not in a motif group | ||
| HL_5WFS_016 | 1/A/566:575 | T-loop with 2 stacked bulged bases Not in a motif group | geometric HL_5J7L_150 HL_89380.2 | |
| HL_5WFS_017 | 1/A/611:617 | No text annotation Not in a motif group | homologous HL_5J7L_151 HL_90617.2 | |
| HL_5WFS_018 | 1/A/629:634 | GNRA Not in a motif group | homologous HL_5J7L_152 HL_42097.1 | |
| HL_5WFS_019 | 1/A/641:647 | No text annotation Not in a motif group | homologous HL_5J7L_153 HL_77805.2 | |
| HL_5WFS_020 | 1/A/712:719 | No text annotation Not in a motif group | homologous HL_5J7L_154 HL_84085.2 | |
| HL_5WFS_021 | 1/A/744:753 | No text annotation Not in a motif group | homologous HL_5J7L_155 NA | |
| HL_5WFS_022 | 1/A/779:785 | Other HL Not in a motif group | geometric HL_2NUE_001 HL_07518.1 | |
| HL_5WFS_023 | 1/A/826:831 | No text annotation Not in a motif group | homologous HL_7RQB_025 HL_64365.1 | |
| HL_5WFS_025 | 1/A/954:963 | No text annotation Not in a motif group | homologous HL_5J7L_159 NA | |
| HL_5WFS_026 | 1/A/978:985 | No text annotation Not in a motif group | homologous HL_4WF9_028 HL_64430.2 | |
| HL_5WFS_027 | 1/A/1092:1099 | No text annotation Not in a motif group | homologous HL_6PRV_002 HL_84085.2 | |
| HL_5WFS_028 | 1/A/1168:1181 | No text annotation Not in a motif group | ||
| HL_5WFS_029 | 1/A/1222:1227 | Other HL Not in a motif group | homologous HL_5J7L_164 HL_87030.2 | |
| HL_5WFS_030 | 1/A/1281:1289 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5J7L_165 HL_89380.2 | |
| HL_5WFS_031 | 1/A/1324:1330 | No text annotation Not in a motif group | homologous HL_5J7L_166 HL_46680.1 | |
| HL_5WFS_032 | 1/A/1363:1368 | Other HL Not in a motif group | homologous HL_5J7L_167 HL_87030.2 | |
| HL_5WFS_033 | 1/A/1389:1398 | No text annotation Not in a motif group | homologous HL_5J7L_168 HL_69023.2 | |
| HL_5WFS_034 | 1/A/1451:1459 | No text annotation Not in a motif group | homologous HL_5J7L_169 HL_53837.1 | |
| HL_5WFS_035 | 1/A/1492:1498 | No text annotation Not in a motif group | homologous HL_5J7L_170 HL_46680.1 | |
| HL_5WFS_036 | 1/A/1530:1541 | No text annotation Not in a motif group | ||
| HL_5WFS_037 | 1/A/1565:1568 | No text annotation Not in a motif group | homologous HL_5J7L_172 HL_38927.2 | |
| HL_5WFS_038 | 1/A/1612:1619 | No text annotation Not in a motif group | ||
| HL_5WFS_039 | 1/A/1630:1636 | GNRA with one bulged base Not in a motif group | homologous HL_5J7L_174 HL_42097.1 | |
| HL_5WFS_040 | 1/A/1691:1696 | UNCG Not in a motif group | geometric HL_4JF2_003 HL_03562.2 | |
| HL_5WFS_041 | 1/A/1728:1731 | No text annotation Not in a motif group | ||
| HL_5WFS_042 | 1/A/1752:1756 | No text annotation Not in a motif group | homologous HL_5J7L_177 HL_76539.2 | |
| HL_5WFS_043 | 1/A/1777:1787 | No text annotation Not in a motif group | homologous HL_4WF9_043 HL_43613.5 | |
| HL_5WFS_044 | 1/A/1806:1811 | No text annotation Not in a motif group | homologous HL_5J7L_179 HL_42097.1 | |
| HL_5WFS_045 | 1/A/1868:1873 | Other HL Not in a motif group | homologous HL_5J7L_180 HL_42097.1 | |
| HL_5WFS_046 | 1/A/1910:1920 | No text annotation Not in a motif group | homologous HL_5J7L_181 NA | |
| HL_5WFS_047 | 1/A/1949:1957 | No text annotation Not in a motif group | homologous HL_5J7L_182 HL_51824.1 | |
| HL_5WFS_048 | 1/A/2027:2036 | No text annotation Not in a motif group | ||
| HL_5WFS_049 | 1/A/2142:2149 | No text annotation Not in a motif group | ||
| HL_5WFS_050 | 1/A/2209:2215 | No text annotation Not in a motif group | homologous HL_5J7L_185 HL_16845.6 | |
| HL_5WFS_051 | 1/A/2248:2256 | No text annotation Not in a motif group | homologous HL_7A0S_052 HL_53171.2 | |
| HL_5WFS_052 | 1/A/2264:2276 | No text annotation Not in a motif group | homologous HL_5J7L_187 HL_19870.6 | |
| HL_5WFS_053 | 1/A/2303:2313 | No text annotation Not in a motif group | homologous HL_7RQB_055 HL_11805.3 | |
| HL_5WFS_054 | 1/A/2324:2331 | No text annotation Not in a motif group | homologous HL_5J7L_189 HL_12078.2 | |
| HL_5WFS_055 | 1/A/2356:2361 | Other HL Not in a motif group | homologous HL_5J7L_190 HL_87030.2 | |
| HL_5WFS_056 | 1/A/2374:2379 | GNRA Not in a motif group | homologous HL_4WF9_054 HL_42097.1 | |
| HL_5WFS_057 | 1/A/2404:2413 | No text annotation Not in a motif group | homologous HL_5J7L_192 HL_30784.2 | |
| HL_5WFS_058 | 1/A/2470:2480 | No text annotation Not in a motif group | ||
| HL_5WFS_059 | 1/A/2528:2535 | No text annotation Not in a motif group | homologous HL_5J7L_194 HL_88526.2 | |
| HL_5WFS_060 | 1/A/2551:2557 | No text annotation Not in a motif group | homologous HL_5J7L_195 NA | |
| HL_5WFS_061 | 1/A/2594:2599 | GNRA Not in a motif group | homologous HL_5J7L_196 HL_42097.1 | |
| HL_5WFS_062 | 1/A/2658:2663 | No text annotation Not in a motif group | geometric HL_5J7L_179 HL_42097.1 | |
| HL_5WFS_063 | 1/A/2701:2706 | Ribsomal LSU H95 Not in a motif group | homologous HL_5J7L_198 HL_46680.1 | |
| HL_5WFS_064 | 1/A/2745:2759 | No text annotation Not in a motif group | homologous HL_5J7L_199 HL_56677.7 | |
| HL_5WFS_065 | 1/A/2795:2801 | No text annotation Not in a motif group | ||
| HL_5WFS_066 | 1/A/2819:2827 | No text annotation Not in a motif group | homologous HL_5J7L_201 HL_27930.1 | |
| HL_5WFS_067 | 1/A/2856:2861 | Other HL Not in a motif group | homologous HL_5J7L_202 HL_42097.1 | |
| HL_5WFS_068 | 1/B/38:44 | No text annotation Not in a motif group | geometric HL_5J7L_203 HL_87939.1 | |
| HL_5WFS_069 | 1/B/86:90 | No text annotation Not in a motif group | homologous HL_5J7L_204 HL_38927.2 | |
| HL_5WFS_070 | 1/a/12:22 | No text annotation Not in a motif group | homologous HL_5J7L_001 HL_89881.2 | |
| HL_5WFS_071 | 1/a/78:91 | No text annotation Not in a motif group | ||
| HL_5WFS_072 | 1/a/158:163 | GNRA Not in a motif group | homologous HL_5J7L_003 HL_42097.1 | |
| HL_5WFS_073 | 1/a/186:191 | GNRA Not in a motif group | homologous HL_5J7L_004 HL_42097.1 | |
| HL_5WFS_074 | 1/a/203:214 | No text annotation Not in a motif group | ||
| HL_5WFS_075 | 1/a/257:269 | No text annotation Not in a motif group | ||
| HL_5WFS_076 | 1/a/296:301 | GNRA Not in a motif group | homologous HL_5J7L_007 HL_42097.1 | |
| HL_5WFS_077 | 1/a/320:333 | No text annotation Not in a motif group | homologous HL_5J7L_008 HL_81205.2 | |
| HL_5WFS_078 | 1/a/342:347 | UNCG Not in a motif group | homologous HL_4LFB_009 HL_03562.2 | |
| HL_5WFS_079 | 1/a/378:385 | No text annotation Not in a motif group | geometric HL_5TBW_012 HL_86373.2 | |
| HL_5WFS_080 | 1/a/419:424 | UNCG Not in a motif group | homologous HL_5J7L_011 HL_03562.2 | |
| HL_5WFS_081 | 1/a/462:470 | No text annotation Not in a motif group | homologous HL_5J7L_012 HL_84085.2 | |
| HL_5WFS_082 | 1/a/521:528 | No text annotation Not in a motif group | geometric HL_5NFV_001 HL_76539.2 | |
| HL_5WFS_083 | 1/a/617:623 | No text annotation Not in a motif group | homologous HL_4LFB_014 HL_26881.1 | |
| HL_5WFS_084 | 1/a/689:698 | No text annotation Not in a motif group | homologous HL_5J7L_015 HL_12326.1 | |
| HL_5WFS_085 | 1/a/726:731 | Other HL Not in a motif group | homologous HL_5J7L_016 HL_87030.2 | |
| HL_5WFS_086 | 1/a/786:796 | No text annotation Not in a motif group | homologous HL_5J7L_017 HL_12326.1 | |
| HL_5WFS_087 | 1/a/839:847 | No text annotation Not in a motif group | geometric HL_2ZZM_002 HL_23083.1 | |
| HL_5WFS_088 | 1/a/862:867 | GNRA Not in a motif group | homologous HL_5J7L_019 HL_42097.1 | |
| HL_5WFS_089 | 1/a/897:902 | GNRA Not in a motif group | homologous HL_5J7L_020 HL_42097.1 | |
| HL_5WFS_090 | 1/a/963:972 | No text annotation Not in a motif group | homologous HL_5J7L_021 NA | |
| HL_5WFS_091 | 1/a/1012:1017 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_42097.1 | |
| HL_5WFS_092 | 1/a/1076:1081 | GNRA Not in a motif group | homologous HL_5J7L_023 HL_42097.1 | |
| HL_5WFS_093 | 1/a/1089:1096 | No text annotation Not in a motif group | homologous HL_4LFB_025 HL_71554.2 | |
| HL_5WFS_094 | 1/a/1134:1140 | No text annotation Not in a motif group | homologous HL_5J7L_025 HL_03562.2 | |
| HL_5WFS_095 | 1/a/1165:1171 | GNRA Not in a motif group | homologous HL_4LFB_027 HL_42097.1 | |
| HL_5WFS_096 | 1/a/1265:1270 | Other HL Not in a motif group | homologous HL_4LFB_028 HL_42097.1 | |
| HL_5WFS_097 | 1/a/1314:1323 | No text annotation Not in a motif group | homologous HL_4LFB_029 HL_89380.2 | |
| HL_5WFS_098 | 1/a/1356:1366 | No text annotation Not in a motif group | homologous HL_4LFB_030 HL_96366.1 | |
| HL_5WFS_099 | 1/a/1449:1454 | No text annotation Not in a motif group | ||
| HL_5WFS_100 | 1/a/1515:1520 | No text annotation Not in a motif group | homologous HL_6CZR_103 NA | |
| HL_5WFS_101 | 1/v/12:22 | No text annotation Not in a motif group | homologous HL_4TUE_033 HL_25462.2 | |
| HL_5WFS_102 | 1/v/31:39 | No text annotation Not in a motif group | homologous HL_5E81_212 NA | |
| HL_5WFS_103 | 1/v/53:61 | No text annotation Not in a motif group | homologous HL_6CFJ_108 NA | |
| HL_5WFS_104 | 1/w/13:22 | No text annotation Not in a motif group | homologous HL_4LCK_001 NA | |
| HL_5WFS_105 | 1/w/30:40 | No text annotation Not in a motif group | homologous HL_5IB8_208 NA | |
| HL_5WFS_106 | 1/w/53:61 | No text annotation Not in a motif group | homologous HL_1H4S_003 NA | |
| HL_5WFS_108 | 1/y/30:40 | No text annotation Not in a motif group | homologous HL_5IB8_208 NA | |
| HL_5WFS_109 | 1/y/53:61 | No text annotation Not in a motif group | homologous HL_5L4O_003 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5WFS_024 | No text annotation | ||
| HL_5WFS_107 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5WFS_001 | 1/A/24:30, 1/A/510:516 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_7RQB_001 IL_66414.6 | |
| IL_5WFS_002 | 1/A/36:37, 1/A/442:444 | Single bulged A Not in a motif group | homologous IL_5J7L_246 IL_37497.2 | |
| IL_5WFS_003 | 1/A/43:44, 1/A/434:436 | Minor groove platform Not in a motif group | homologous IL_5J7L_247 IL_42622.2 | |
| IL_5WFS_004 | 1/A/81:85, 1/A/97:105 | No text annotation Not in a motif group | homologous IL_5J7L_248 IL_93699.1 | |
| IL_5WFS_005 | 1/A/183:184, 1/A/212:214 | Single stack bend Not in a motif group | homologous IL_4WF9_007 IL_76488.2 | |
| IL_5WFS_006 | 1/A/188:194, 1/A/201:208 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_250 IL_04346.7 | |
| IL_5WFS_007 | 1/A/239:245, 1/A/253:258 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_251 IL_76042.2 | |
| IL_5WFS_008 | 1/A/284:290, 1/A/350:356 | No text annotation Not in a motif group | ||
| IL_5WFS_009 | 1/A/293:295, 1/A/343:347 | No text annotation Not in a motif group | homologous IL_5J7L_254 IL_69440.1 | |
| IL_5WFS_010 | 1/A/481:484, 1/A/496:509 | No text annotation Not in a motif group | homologous IL_5J7L_255 IL_60992.6 | |
| IL_5WFS_011 | 1/A/536:539, 1/A/554:557 | Double sheared Not in a motif group | homologous IL_5J7L_256 IL_09705.9 | |
| IL_5WFS_012 | 1/A/564:566, 1/A/575:577 | No text annotation Not in a motif group | homologous IL_5J7L_257 IL_95997.1 | |
| IL_5WFS_013 | 1/A/606:610, 1/A/618:622 | AAA cross-strand stack Not in a motif group | homologous IL_5J7L_258 IL_17136.1 | |
| IL_5WFS_014 | 1/A/672:674, 1/A/806:808 | No text annotation Not in a motif group | geometric IL_7RQB_017 IL_95997.1 | |
| IL_5WFS_015 | 1/A/674:678, 1/A/799:806 | No text annotation Not in a motif group | homologous IL_7RQB_018 IL_17470.6 | |
| IL_5WFS_016 | 1/A/697:698, 1/A/763:765 | Single bulged A Not in a motif group | homologous IL_5J7L_261 IL_37497.2 | |
| IL_5WFS_017 | 1/A/702:703, 1/A/728:730 | Single bulged G Not in a motif group | geometric IL_5J7L_262 IL_00225.2 | |
| IL_5WFS_018 | 1/A/703:710, 1/A/721:728 | No text annotation Not in a motif group | ||
| IL_5WFS_019 | 1/A/738:740, 1/A/757:758 | Major groove platform Not in a motif group | homologous IL_5J7L_264 IL_27635.1 | |
| IL_5WFS_020 | 1/A/775:777, 1/A/787:791 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_265 IL_90991.6 | |
| IL_5WFS_021 | 1/A/844:847, 1/A/933:934 | Other IL Not in a motif group | homologous IL_5J7L_267 IL_92001.1 | |
| IL_5WFS_022 | 1/A/847:848, 1/A/930:933 | Stack outside cWW Not in a motif group | geometric IL_5J7L_268 IL_37629.1 | |
| IL_5WFS_023 | 1/A/850:851, 1/A/926:928 | Single stack bend Not in a motif group | homologous IL_5J7L_269 IL_76488.2 | |
| IL_5WFS_024 | 1/A/856:862, 1/A/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | homologous IL_5J7L_270 IL_93830.3 | |
| IL_5WFS_025 | 1/A/862:863, 1/A/913:915 | Single bulged G Not in a motif group | geometric IL_5J7L_271 IL_00225.2 | |
| IL_5WFS_026 | 1/A/864:868, 1/A/909:912 | C-loop Not in a motif group | homologous IL_5J7L_272 IL_63596.6 | |
| IL_5WFS_027 | 1/A/870:872, 1/A/905:907 | No text annotation Not in a motif group | homologous IL_5J7L_273 IL_95997.1 | |
| IL_5WFS_028 | 1/A/875:879, 1/A/898:902 | Triple sheared Not in a motif group | geometric IL_7RQB_075 IL_56467.8 | |
| IL_5WFS_029 | 1/A/879:882, 1/A/894:898 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_429 IL_30621.2 | |
| IL_5WFS_030 | 1/A/994:996, 1/A/1159:1160 | Single bulged C Not in a motif group | homologous IL_5J7L_276 IL_61258.12 | |
| IL_5WFS_031 | 1/A/998:1002, 1/A/1153:1157 | UAA/GAN Not in a motif group | homologous IL_5J7L_277 IL_89002.2 | |
| IL_5WFS_032 | 1/A/1004:1011, 1/A/1150:1151 | SSU/LSU pseudoknot Not in a motif group | geometric IL_5J7L_278 IL_15861.7 | |
| IL_5WFS_033 | 1/A/1011:1013, 1/A/1149:1150 | Single bulged U Not in a motif group | homologous IL_5J7L_279 IL_83039.13 | |
| IL_5WFS_034 | 1/A/1018:1030, 1/A/1124:1144 | No text annotation Not in a motif group | ||
| IL_5WFS_035 | 1/A/1031:1034, 1/A/1121:1123 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5J7L_282 IL_82068.2 | |
| IL_5WFS_036 | 1/A/1037:1041, 1/A/1114:1118 | No text annotation Not in a motif group | geometric IL_5TBW_121 IL_05145.2 | |
| IL_5WFS_037 | 1/A/1043:1055, 1/A/1104:1112 | No text annotation Not in a motif group | ||
| IL_5WFS_038 | 1/A/1055:1087, 1/A/1102:1104 | No text annotation Not in a motif group | ||
| IL_5WFS_039 | 1/A/1087:1090, 1/A/1101:1102 | Major groove platform Not in a motif group | geometric IL_4V9F_044 IL_27635.1 | |
| IL_5WFS_040 | 1/A/1196:1198, 1/A/1247:1250 | Isolated cWS basepair Not in a motif group | homologous IL_5J7L_286 IL_52767.2 | |
| IL_5WFS_041 | 1/A/1202:1206, 1/A/1240:1243 | No text annotation Not in a motif group | homologous IL_5J7L_287 IL_91920.1 | |
| IL_5WFS_042 | 1/A/1208:1215, 1/A/1234:1238 | Kink-turn Not in a motif group | homologous IL_5J7L_288 IL_70923.2 | |
| IL_5WFS_043 | 1/A/1262:1269, 1/A/2011:2017 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_289 IL_04346.7 | |
| IL_5WFS_044 | 1/A/1310:1313, 1/A/1603:1604 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_050 IL_50694.2 | |
| IL_5WFS_045 | 1/A/1319:1323, 1/A/1331:1333 | C-loop Not in a motif group | homologous IL_5J7L_291 IL_63596.6 | |
| IL_5WFS_046 | 1/A/1351:1355, 1/A/1376:1380 | UAA/GAN Not in a motif group | homologous IL_5J7L_292 IL_89002.2 | |
| IL_5WFS_047 | 1/A/1357:1361, 1/A/1370:1374 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_293 IL_17136.1 | |
| IL_5WFS_048 | 1/A/1414:1416, 1/A/1582:1588 | No text annotation Not in a motif group | ||
| IL_5WFS_049 | 1/A/1417:1421, 1/A/1577:1581 | UAA/GAN Not in a motif group | homologous IL_5J7L_295 IL_89002.2 | |
| IL_5WFS_050 | 1/A/1432:1435, 1/A/1557:1561 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_296 IL_55178.1 | |
| IL_5WFS_051 | 1/A/1437:1440, 1/A/1551:1555 | tSH-tHW Not in a motif group | homologous IL_5J7L_297 IL_04059.1 | |
| IL_5WFS_052 | 1/A/1450:1451, 1/A/1459:1461 | Single bulged U Not in a motif group | geometric IL_5J7L_298 IL_83039.13 | |
| IL_5WFS_053 | 1/A/1468:1471, 1/A/1520:1524 | No text annotation Not in a motif group | homologous IL_5J7L_299 IL_68574.2 | |
| IL_5WFS_054 | 1/A/1474:1478, 1/A/1513:1517 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_300 IL_38862.1 | |
| IL_5WFS_055 | 1/A/1481:1484, 1/A/1505:1510 | No text annotation Not in a motif group | ||
| IL_5WFS_056 | 1/A/1489:1491, 1/A/1499:1500 | Single bulged A Not in a motif group | homologous IL_5J7L_302 IL_37497.2 | |
| IL_5WFS_057 | 1/A/1526:1529, 1/A/1542:1546 | UAA/GAN variation Not in a motif group | homologous IL_5J7L_303 IL_07235.1 | |
| IL_5WFS_058 | 1/A/1651:1656, 1/A/2004:2006 | No text annotation Not in a motif group | homologous IL_5J7L_304 IL_12566.2 | |
| IL_5WFS_059 | 1/A/1663:1665, 1/A/1995:1997 | Isolated tWW turn Not in a motif group | homologous IL_4WF9_063 IL_54997.7 | |
| IL_5WFS_060 | 1/A/1666:1669, 1/A/1993:1994 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_5J7L_306 IL_50694.2 | |
| IL_5WFS_061 | 1/A/1669:1674, 1/A/1990:1993 | Intercalated tWH Not in a motif group | geometric IL_5J7L_307 IL_82842.2 | |
| IL_5WFS_062 | 1/A/1686:1691, 1/A/1696:1702 | tSH-tSH-tHH-tHS Not in a motif group | homologous IL_5J7L_308 IL_65969.2 | |
| IL_5WFS_063 | 1/A/1712:1718, 1/A/1742:1746 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_309 IL_88269.3 | |
| IL_5WFS_064 | 1/A/1720:1724, 1/A/1736:1740 | Triple sheared Not in a motif group | geometric IL_5J7L_263 IL_56467.8 | |
| IL_5WFS_065 | 1/A/1727:1728, 1/A/1731:1733 | Single bulged C Not in a motif group | homologous IL_5J7L_311 IL_61258.12 | |
| IL_5WFS_066 | 1/A/1770:1771, 1/A/1980:1982 | Single bulged A Not in a motif group | homologous IL_4WF9_068 IL_37497.2 | |
| IL_5WFS_067 | 1/A/1798:1804, 1/A/1813:1821 | Kink-turn related Not in a motif group | homologous IL_5J7L_313 IL_17069.3 | |
| IL_5WFS_068 | 1/A/1837:1840, 1/A/1902:1903 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_314 IL_88739.1 | |
| IL_5WFS_069 | 1/A/1841:1842, 1/A/1898:1901 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_315 IL_16396.2 | |
| IL_5WFS_070 | 1/A/1846:1849, 1/A/1893:1894 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_316 IL_09061.6 | |
| IL_5WFS_071 | 1/A/1863:1868, 1/A/1873:1879 | No text annotation Not in a motif group | ||
| IL_5WFS_072 | 1/A/1933:1934, 1/A/1964:1967 | Multiple bulged bases Not in a motif group | geometric IL_7RQB_076 IL_59677.2 | |
| IL_5WFS_073 | 1/A/1934:1945, 1/A/1961:1964 | No text annotation Not in a motif group | homologous IL_4WF9_077 IL_81589.2 | |
| IL_5WFS_074 | 1/A/2050:2052, 1/A/2617:2618 | Major groove platform Not in a motif group | homologous IL_5J7L_320 IL_27635.1 | |
| IL_5WFS_075 | 1/A/2054:2056, 1/A/2612:2615 | No text annotation Not in a motif group | homologous IL_4WF9_079 IL_54678.5 | |
| IL_5WFS_076 | 1/A/2064:2066, 1/A/2444:2446 | No text annotation Not in a motif group | homologous IL_5J7L_322 NA | |
| IL_5WFS_077 | 1/A/2067:2070, 1/A/2441:2443 | No text annotation Not in a motif group | geometric IL_5C5W_002 IL_95997.1 | |
| IL_5WFS_078 | 1/A/2070:2071, 1/A/2438:2441 | Minor groove platform Not in a motif group | homologous IL_5J7L_324 IL_42622.2 | |
| IL_5WFS_079 | 1/A/2081:2083, 1/A/2236:2239 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_5J7L_325 IL_38958.7 | |
| IL_5WFS_080 | 1/A/2085:2087, 1/A/2232:2234 | No text annotation Not in a motif group | homologous IL_5J7L_326 IL_95997.1 | |
| IL_5WFS_081 | 1/A/2097:2105, 1/A/2184:2192 | No text annotation Not in a motif group | ||
| IL_5WFS_082 | 1/A/2105:2121, 1/A/2177:2184 | No text annotation Not in a motif group | ||
| IL_5WFS_083 | 1/A/2121:2128, 1/A/2160:2177 | No text annotation Not in a motif group | ||
| IL_5WFS_084 | 1/A/2128:2138, 1/A/2153:2160 | No text annotation Not in a motif group | ||
| IL_5WFS_085 | 1/A/2139:2141, 1/A/2150:2152 | No text annotation Not in a motif group | geometric IL_4V8Q_188 IL_95997.1 | |
| IL_5WFS_086 | 1/A/2202:2204, 1/A/2220:2221 | Single bulged U Not in a motif group | homologous IL_5J7L_331 IL_83039.13 | |
| IL_5WFS_087 | 1/A/2350:2353, 1/A/2364:2367 | Double sheared Not in a motif group | homologous IL_5J7L_333 IL_09705.9 | |
| IL_5WFS_088 | 1/A/2401:2403, 1/A/2414:2415 | Single bulged U Not in a motif group | homologous IL_5J7L_334 IL_83039.13 | |
| IL_5WFS_089 | 1/A/2453:2455, 1/A/2496:2500 | No text annotation Not in a motif group | homologous IL_5J7L_335 NA | |
| IL_5WFS_090 | 1/A/2456:2459, 1/A/2493:2495 | Major groove platform with extra pair Not in a motif group | geometric IL_7RQB_093 IL_63450.2 | |
| IL_5WFS_091 | 1/A/2459:2461, 1/A/2489:2493 | Major groove minor groove platform with extra cWW Not in a motif group | homologous IL_5J7L_337 IL_92788.2 | |
| IL_5WFS_092 | 1/A/2466:2470, 1/A/2480:2484 | Triple sheared Not in a motif group | homologous IL_5J7L_338 IL_56467.8 | |
| IL_5WFS_093 | 1/A/2507:2509, 1/A/2579:2582 | No text annotation Not in a motif group | homologous IL_5J7L_339 NA | |
| IL_5WFS_094 | 1/A/2510:2512, 1/A/2574:2578 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5J7L_340 IL_90933.2 | |
| IL_5WFS_095 | 1/A/2512:2513, 1/A/2571:2574 | No text annotation Not in a motif group | homologous IL_5J7L_341 IL_71530.2 | |
| IL_5WFS_096 | 1/A/2522:2523, 1/A/2540:2543 | Minor groove platform with intercalation Not in a motif group | homologous IL_5J7L_342 IL_95601.3 | |
| IL_5WFS_097 | 1/A/2588:2591, 1/A/2603:2606 | No text annotation Not in a motif group | homologous IL_5J7L_343 NA | |
| IL_5WFS_098 | 1/A/2591:2592, 1/A/2601:2603 | Single bulged A Not in a motif group | geometric IL_7RQB_101 IL_37497.2 | |
| IL_5WFS_099 | 1/A/2636:2640, 1/A/2774:2782 | No text annotation Not in a motif group | homologous IL_5J7L_345 IL_04638.1 | |
| IL_5WFS_100 | 1/A/2652:2658, 1/A/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | homologous IL_5J7L_346 IL_16458.1 | |
| IL_5WFS_101 | 1/A/2680:2684, 1/A/2725:2727 | C-loop Not in a motif group | homologous IL_5J7L_347 IL_63596.6 | |
| IL_5WFS_102 | 1/A/2687:2691, 1/A/2718:2722 | No text annotation Not in a motif group | homologous IL_5J7L_348 IL_08296.3 | |
| IL_5WFS_103 | 1/A/2695:2696, 1/A/2711:2714 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_349 IL_71530.2 | |
| IL_5WFS_104 | 1/A/2737:2742, 1/A/2762:2767 | UAA/GAN with extra cWW Not in a motif group | homologous IL_5J7L_350 IL_49767.5 | |
| IL_5WFS_105 | 1/A/2806:2811, 1/A/2889:2892 | No text annotation Not in a motif group | geometric IL_5J7L_351 IL_49460.2 | |
| IL_5WFS_106 | 1/A/2838:2839, 1/A/2878:2880 | Major groove intercalation Not in a motif group | homologous IL_5J7L_352 IL_16396.2 | |
| IL_5WFS_107 | 1/A/2843:2846, 1/A/2870:2874 | Multiple bulged bases with non-canonical cWW Not in a motif group | homologous IL_5J7L_353 IL_58764.3 | |
| IL_5WFS_108 | 1/A/2847:2852, 1/A/2865:2869 | No text annotation Not in a motif group | homologous IL_5J7L_354 IL_83162.5 | |
| IL_5WFS_109 | 1/B/17:19, 1/B/64:67 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5ML7_010 IL_82068.2 | |
| IL_5WFS_110 | 1/B/23:28, 1/B/56:60 | No text annotation Not in a motif group | homologous IL_5J7L_356 IL_18472.2 | |
| IL_5WFS_111 | 1/B/30:31, 1/B/51:54 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_357 IL_09061.6 | |
| IL_5WFS_112 | 1/B/34:38, 1/B/44:48 | Symmetric double minor groove platform Not in a motif group | homologous IL_5J7L_358 IL_58103.6 | |
| IL_5WFS_113 | 1/B/71:79, 1/B/97:105 | Bacterial 5S Loop E Not in a motif group | homologous IL_5J7L_359 IL_56455.3 | |
| IL_5WFS_114 | 1/a/30:32, 1/a/552:553 | Single bulged G Not in a motif group | homologous IL_4LFB_001 IL_00225.2 | |
| IL_5WFS_115 | 1/a/44:45, 1/a/396:398 | Single bulged A Not in a motif group | homologous IL_6CZR_114 IL_37497.2 | |
| IL_5WFS_116 | 1/a/47:52, 1/a/359:361 | No text annotation Not in a motif group | geometric IL_5J7L_003 IL_11178.1 | |
| IL_5WFS_117 | 1/a/54:56, 1/a/356:357 | Minor groove platform Not in a motif group | homologous IL_4LFB_004 IL_93353.1 | |
| IL_5WFS_118 | 1/a/61:66, 1/a/103:106 | Other IL Not in a motif group | geometric IL_5TBW_043 IL_71110.1 | |
| IL_5WFS_119 | 1/a/128:131, 1/a/231:233 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5J7L_009 IL_82068.2 | |
| IL_5WFS_120 | 1/a/131:136, 1/a/227:231 | No text annotation Not in a motif group | ||
| IL_5WFS_121 | 1/a/144:146, 1/a/176:178 | Isolated cWH basepair Not in a motif group | homologous IL_5J7L_011 IL_51629.2 | |
| IL_5WFS_122 | 1/a/147:153, 1/a/168:175 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_5J7L_012 IL_80604.2 | |
| IL_5WFS_123 | 1/a/242:247, 1/a/277:284 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_5J7L_014 IL_45067.2 | |
| IL_5WFS_124 | 1/a/249:253, 1/a/273:275 | No text annotation Not in a motif group | homologous IL_6CZR_124 IL_38684.1 | |
| IL_5WFS_125 | 1/a/292:293, 1/a/304:308 | C-loop Not in a motif group | homologous IL_6CZR_125 IL_37712.2 | |
| IL_5WFS_126 | 1/a/371:377, 1/a/386:390 | No text annotation Not in a motif group | ||
| IL_5WFS_127 | 1/a/409:416, 1/a/427:433 | No text annotation Not in a motif group | homologous IL_4LFB_017 IL_28026.1 | |
| IL_5WFS_128 | 1/a/440:442, 1/a/492:497 | No text annotation Not in a motif group | homologous IL_5J7L_021 IL_22248.1 | |
| IL_5WFS_129 | 1/a/445:450, 1/a/483:489 | No text annotation Not in a motif group | ||
| IL_5WFS_130 | 1/a/450:454, 1/a/479:483 | No text annotation Not in a motif group | ||
| IL_5WFS_131 | 1/a/454:456, 1/a/476:479 | No text annotation Not in a motif group | ||
| IL_5WFS_132 | 1/a/504:511, 1/a/540:541 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5J7L_024 IL_15861.7 | |
| IL_5WFS_133 | 1/a/515:521, 1/a/528:536 | No text annotation Not in a motif group | homologous IL_4LFB_021 NA | |
| IL_5WFS_134 | 1/a/569:575, 1/a/880:881 | No text annotation Not in a motif group | homologous IL_5J7L_026 IL_69996.1 | |
| IL_5WFS_135 | 1/a/580:584, 1/a/757:761 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_027 IL_17136.1 | |
| IL_5WFS_136 | 1/a/593:596, 1/a/644:646 | Major groove platform with extra pair Not in a motif group | geometric IL_7RQB_093 IL_63450.2 | |
| IL_5WFS_137 | 1/a/597:598, 1/a/640:643 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_029 IL_09061.6 | |
| IL_5WFS_138 | 1/a/604:612, 1/a/628:634 | No text annotation Not in a motif group | ||
| IL_5WFS_139 | 1/a/654:655, 1/a/751:754 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_5J7L_031 IL_50694.2 | |
| IL_5WFS_140 | 1/a/659:660, 1/a/745:747 | Single stack bend Not in a motif group | homologous IL_5J7L_032 IL_76488.2 | |
| IL_5WFS_141 | 1/a/662:666, 1/a/740:743 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_033 IL_71110.1 | |
| IL_5WFS_142 | 1/a/673:678, 1/a/712:717 | No text annotation Not in a motif group | homologous IL_5J7L_034 IL_04668.1 | |
| IL_5WFS_143 | 1/a/684:688, 1/a/699:706 | Kink-turn Not in a motif group | homologous IL_5J7L_035 IL_45067.2 | |
| IL_5WFS_144 | 1/a/774:778, 1/a/804:805 | Left turn Not in a motif group | homologous IL_5J7L_036 IL_29346.1 | |
| IL_5WFS_145 | 1/a/779:783, 1/a/799:803 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_037 IL_17136.1 | |
| IL_5WFS_146 | 1/a/887:894, 1/a/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_5J7L_038 IL_24606.2 | |
| IL_5WFS_147 | 1/a/922:923, 1/a/1393:1395 | Single bulged A Not in a motif group | homologous IL_4LFB_035 IL_37497.2 | |
| IL_5WFS_148 | 1/a/925:927, 1/a/1390:1391 | Single bulged G Not in a motif group | homologous IL_5J7L_040 IL_00225.2 | |
| IL_5WFS_149 | 1/a/933:935, 1/a/1380:1384 | Minor groove platform Not in a motif group | homologous IL_5J7L_041 IL_47078.1 | |
| IL_5WFS_150 | 1/a/953:954, 1/a/1226:1228 | No text annotation Not in a motif group | homologous IL_6CZR_150 NA | |
| IL_5WFS_151 | 1/a/993:997, 1/a/1044:1045 | Minor groove platform Not in a motif group | homologous IL_5J7L_043 IL_47078.1 | |
| IL_5WFS_152 | 1/a/998:999, 1/a/1041:1043 | Single stack bend Not in a motif group | homologous IL_5J7L_044 IL_76488.2 | |
| IL_5WFS_153 | 1/a/1003:1006, 1/a/1023:1037 | No text annotation Not in a motif group | ||
| IL_5WFS_154 | 1/a/1048:1050, 1/a/1208:1209 | Single bulged U Not in a motif group | homologous IL_5J7L_046 IL_83039.13 | |
| IL_5WFS_155 | 1/a/1050:1056, 1/a/1204:1208 | No text annotation Not in a motif group | ||
| IL_5WFS_156 | 1/a/1057:1058, 1/a/1199:1203 | Minor groove platform Not in a motif group | homologous IL_5J7L_048 IL_93353.1 | |
| IL_5WFS_157 | 1/a/1060:1061, 1/a/1195:1197 | Single bulged A Not in a motif group | homologous IL_5J7L_049 IL_37497.2 | |
| IL_5WFS_158 | 1/a/1061:1063, 1/a/1193:1195 | No text annotation Not in a motif group | geometric IL_5J7L_050 IL_95997.1 | |
| IL_5WFS_159 | 1/a/1124:1128, 1/a/1144:1149 | No text annotation Not in a motif group | homologous IL_5J7L_051 IL_93211.1 | |
| IL_5WFS_160 | 1/a/1129:1132, 1/a/1142:1143 | Minor groove platform Not in a motif group | homologous IL_5J7L_052 IL_15052.1 | |
| IL_5WFS_161 | 1/a/1158:1161, 1/a/1175:1181 | No text annotation Not in a motif group | geometric IL_5J7L_053 IL_42032.1 | |
| IL_5WFS_162 | 1/a/1247:1253, 1/a/1284:1290 | No text annotation Not in a motif group | homologous IL_5J7L_054 IL_09129.1 | |
| IL_5WFS_163 | 1/a/1255:1258, 1/a/1277:1282 | No text annotation Not in a motif group | homologous IL_5J7L_055 IL_75461.4 | |
| IL_5WFS_164 | 1/a/1259:1263, 1/a/1272:1276 | Triple sheared Not in a motif group | homologous IL_5J7L_056 IL_56467.8 | |
| IL_5WFS_165 | 1/a/1303:1308, 1/a/1329:1334 | No text annotation Not in a motif group | geometric IL_4LFB_055 IL_19954.2 | |
| IL_5WFS_166 | 1/a/1399:1401, 1/a/1501:1504 | No text annotation Not in a motif group | geometric IL_5J7L_058 IL_36143.3 | |
| IL_5WFS_167 | 1/a/1401:1404, 1/a/1497:1501 | No text annotation Not in a motif group | homologous IL_5J7L_059 NA | |
| IL_5WFS_168 | 1/a/1405:1409, 1/a/1491:1496 | No text annotation Not in a motif group | homologous IL_4LFB_058 NA | |
| IL_5WFS_169 | 1/a/1412:1414, 1/a/1486:1488 | No text annotation Not in a motif group | homologous IL_5J7L_061 IL_95997.1 | |
| IL_5WFS_170 | 1/a/1416:1419, 1/a/1481:1484 | Double sheared Not in a motif group | homologous IL_5J7L_062 IL_09705.9 | |
| IL_5WFS_171 | 1/a/1430:1435, 1/a/1466:1470 | Triple sheared related Not in a motif group | homologous IL_5J7L_063 IL_64879.2 | |
| IL_5WFS_172 | 1/a/1440:1442, 1/a/1460:1461 | Minor groove platform Not in a motif group | homologous IL_5J7L_064 IL_42622.2 | |
| IL_5WFS_173 | 1/a/1445:1448, 1/a/1455:1457 | No text annotation Not in a motif group | homologous IL_5J7L_065 IL_02284.5 | |
| IL_5WFS_174 | 1/y/26:27, 1/y/43:45 | Major groove outside cWW, intercalation pocket Not in a motif group | homologous IL_5WT1_001 IL_16396.2 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_5WFS_001 | 1/A/30:31, 1/A/474:481, 1/A/509:510 | No text annotation Not in a motif group | ||
| J3_5WFS_002 | 1/A/56:57, 1/A/70:76, 1/A/110:114 | No text annotation Not in a motif group | homologous J3_5J7L_037 NA | |
| J3_5WFS_003 | 1/A/683:689, 1/A/773:775, 1/A/791:794 | No text annotation Not in a motif group | ||
| J3_5WFS_004 | 1/A/698:700, 1/A/732:736, 1/A/760:763 | No text annotation Not in a motif group | ||
| J3_5WFS_005 | 1/A/1298:1303, 1/A/1625:1627, 1/A/1639:1642 | No text annotation Not in a motif group | homologous J3_5J7L_041 NA | |
| J3_5WFS_006 | 1/A/1306:1309, 1/A/1605:1611, 1/A/1620:1622 | No text annotation Not in a motif group | homologous J3_7A0S_007 NA | |
| J3_5WFS_007 | 1/A/1344:1349, 1/A/1382:1385, 1/A/1402:1403 | No text annotation Not in a motif group | homologous J3_5J7L_043 NA | |
| J3_5WFS_008 | 1/A/2091:2093, 1/A/2196:2200, 1/A/2223:2228 | No text annotation Not in a motif group | homologous J3_5J7L_044 NA | |
| J3_5WFS_009 | 1/A/2295:2299, 1/A/2317:2323, 1/A/2332:2337 | No text annotation Not in a motif group | ||
| J3_5WFS_010 | 1/A/2517:2520, 1/A/2545:2547, 1/A/2561:2567 | No text annotation Not in a motif group | homologous J3_5J7L_046 NA | |
| J3_5WFS_011 | 1/A/2789:2791, 1/A/2805:2806, 1/A/2892:2894 | No text annotation Not in a motif group | homologous J3_5J7L_047 NA | |
| J3_5WFS_012 | 1/A/2812:2815, 1/A/2831:2836, 1/A/2882:2888 | No text annotation Not in a motif group | homologous J3_5J7L_048 NA | |
| J3_5WFS_013 | 1/B/10:16, 1/B/68:70, 1/B/106:110 | No text annotation Not in a motif group | ||
| J3_5WFS_014 | 1/a/46:47, 1/a/361:369, 1/a/392:395 | No text annotation Not in a motif group | ||
| J3_5WFS_015 | 1/a/586:588, 1/a/651:654, 1/a/754:755 | No text annotation Not in a motif group | ||
| J3_5WFS_016 | 1/a/672:673, 1/a/717:725, 1/a/732:734 | No text annotation Not in a motif group | ||
| J3_5WFS_017 | 1/a/826:829, 1/a/857:861, 1/a/868:874 | No text annotation Not in a motif group | homologous J3_5J7L_004 NA | |
| J3_5WFS_018 | 1/a/943:946, 1/a/1235:1237, 1/a/1337:1340 | No text annotation Not in a motif group | ||
| J3_5WFS_019 | 1/a/955:962, 1/a/973:984, 1/a/1221:1225 | No text annotation Not in a motif group | ||
| J3_5WFS_020 | 1/a/990:993, 1/a/1045:1047, 1/a/1210:1215 | No text annotation Not in a motif group | ||
| J3_5WFS_021 | 1/a/1063:1068, 1/a/1107:1113, 1/a/1187:1193 | No text annotation Not in a motif group | ||
| J3_5WFS_022 | 1/a/1073:1074, 1/a/1083:1087, 1/a/1098:1102 | No text annotation Not in a motif group | homologous J3_5J7L_009 NA | |
| J3_5WFS_023 | 1/a/1116:1118, 1/a/1155:1158, 1/a/1181:1184 | No text annotation Not in a motif group | homologous J3_5J7L_010 NA | |
| J3_5WFS_024 | 1/a/1237:1241, 1/a/1296:1303, 1/a/1334:1337 | No text annotation Not in a motif group | homologous J3_4LFB_009 NA |
Problematic loops
No problematic loops
Coloring options: