Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6N8J_0011/1/38:45No text annotation
Not in a motif group
geometric
HL_5TBW_001
HL_06192.2
HL_6N8J_0021/1/69:74No text annotation
Not in a motif group
homologous
HL_8C3A_002
HL_02862.2
HL_6N8J_0031/1/90:96No text annotation
Not in a motif group
homologous
HL_8C3A_003
HL_67216.7
HL_6N8J_0041/1/132:136No text annotation
Not in a motif group
homologous
HL_8C3A_004
HL_98426.1
HL_6N8J_0051/1/194:201T-loop with 1 bulged base
Not in a motif group
homologous
HL_5TBW_005
HL_89380.2
HL_6N8J_0061/1/208:212No text annotation
Not in a motif group
homologous
HL_5TBW_006
HL_98984.2
HL_6N8J_0071/1/216:224No text annotation
Not in a motif group
homologous
HL_5TBW_007
HL_08002.8
HL_6N8J_0081/1/278:287No text annotation
Not in a motif group
homologous
HL_5TBW_008
HL_71554.2
HL_6N8J_0101/1/357:362Other HL
Not in a motif group
homologous
HL_5TBW_010
HL_42097.1
HL_6N8J_0111/1/382:387No text annotation
Not in a motif group
homologous
HL_8C3A_011
HL_42097.1
HL_6N8J_0121/1/543:548No text annotation
Not in a motif group
homologous
HL_5TBW_012
HL_86373.2
HL_6N8J_0131/1/599:604GNRA
Not in a motif group
homologous
HL_5TBW_013
HL_42097.1
HL_6N8J_0141/1/639:650No text annotation
Not in a motif group
geometric
HL_4WSM_226
HL_22031.1
HL_6N8J_0151/1/686:694No text annotation
Not in a motif group
homologous
HL_5TBW_015
HL_03345.1
HL_6N8J_0161/1/707:712GNRA
Not in a motif group
homologous
HL_5TBW_016
HL_42097.1
HL_6N8J_0171/1/732:737GNRA
Not in a motif group
homologous
HL_5TBW_017
HL_42097.1
HL_6N8J_0221/1/958:963No text annotation
Not in a motif group
homologous
HL_8C3A_022
HL_96598.1
HL_6N8J_0251/1/1126:1132No text annotation
Not in a motif group
homologous
HL_8C3A_025
HL_42097.1
HL_6N8J_0261/1/1148:1155No text annotation
Not in a motif group
homologous
HL_5TBW_026
HL_64430.2
HL_6N8J_0301/1/1403:1408No text annotation
Not in a motif group
homologous
HL_8C3A_030
HL_42097.1
HL_6N8J_0601/1/2839:2849No text annotation
Not in a motif group
HL_6N8J_0611/1/2897:2904No text annotation
Not in a motif group
homologous
HL_5TBW_062
HL_88526.2
HL_6N8J_0621/1/2918:2928No text annotation
Not in a motif group
HL_6N8J_0641/1/3025:3030GNRA
Not in a motif group
homologous
HL_5TBW_065
HL_42097.1
HL_6N8J_0651/1/3068:3073Ribsomal LSU H95
Not in a motif group
homologous
HL_5TBW_066
HL_46680.1
HL_6N8J_0661/1/3110:3124No text annotation
Not in a motif group
homologous
HL_8C3A_068
HL_56677.7
HL_6N8J_0671/1/3194:3197No text annotation
Not in a motif group
homologous
HL_5TBW_068
HL_98426.1
HL_6N8J_0681/1/3240:3247No text annotation
Not in a motif group
homologous
HL_5TBW_069
HL_14449.2
HL_6N8J_0691/1/3303:3311No text annotation
Not in a motif group
homologous
HL_5TBW_070
HL_27930.1
HL_6N8J_0701/1/3345:3360No text annotation
Not in a motif group
HL_6N8J_0711/2/36:41No text annotation
Not in a motif group
geometric
HL_5TBW_185
HL_87939.1
HL_6N8J_0721/2/88:93GNRA
Not in a motif group
homologous
HL_5TBW_186
HL_42097.1
HL_6N8J_0731/3/69:89No text annotation
Not in a motif group
HL_6N8J_0741/3/108:114No text annotation
Not in a motif group
homologous
HL_5TBW_075
HL_87939.1
HL_6N8J_0751/3/124:129No text annotation
Not in a motif group
homologous
HL_5TBW_076
HL_96851.2

Problematic loops

#loop idProblemSequence
HL_6N8J_009No text annotation
HL_6N8J_018No text annotation
HL_6N8J_019GNRA
HL_6N8J_020No text annotation
HL_6N8J_021No text annotation
HL_6N8J_023No text annotation
HL_6N8J_024No text annotation
HL_6N8J_027No text annotation
HL_6N8J_028No text annotation
HL_6N8J_029No text annotation
HL_6N8J_031No text annotation
HL_6N8J_032No text annotation
HL_6N8J_033No text annotation
HL_6N8J_034No text annotation
HL_6N8J_035No text annotation
HL_6N8J_036GNRA
HL_6N8J_037No text annotation
HL_6N8J_038No text annotation
HL_6N8J_039Other HL
HL_6N8J_040No text annotation
HL_6N8J_041No text annotation
HL_6N8J_042GNRA with one bulged base
HL_6N8J_043UNCG
HL_6N8J_044No text annotation
HL_6N8J_045No text annotation
HL_6N8J_046No text annotation
HL_6N8J_047No text annotation
HL_6N8J_048Other HL
HL_6N8J_049No text annotation
HL_6N8J_050No text annotation
HL_6N8J_051No text annotation
HL_6N8J_052No text annotation
HL_6N8J_053No text annotation
HL_6N8J_054No text annotation
HL_6N8J_055No text annotation
HL_6N8J_056No text annotation
HL_6N8J_057No text annotation
HL_6N8J_058GNRA
HL_6N8J_059No text annotation
HL_6N8J_063GNRA

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6N8J_0011/1/3:4,
1/3/155:156
No text annotation
Not in a motif group
IL_6N8J_0021/1/7:8,
1/3/150:152
Single bulged C
Not in a motif group
homologous
IL_5TBW_002
IL_61258.12
IL_6N8J_0031/1/12:15,
1/3/144:146
No text annotation
Not in a motif group
geometric
IL_4V9F_105
IL_95997.1
IL_6N8J_0041/1/31:38,
1/1/45:53
tSH-tHW-tHH-tHS
Not in a motif group
homologous
IL_5TBW_005
IL_35728.2
IL_6N8J_0051/1/82:89,
1/1/97:103
No text annotation
Not in a motif group
homologous
IL_5TBW_006
IL_88613.1
IL_6N8J_0061/1/123:124,
1/1/144:149
No text annotation
Not in a motif group
geometric
IL_5TBW_007
IL_19724.2
IL_6N8J_0071/1/125:127,
1/1/141:143
No text annotation
Not in a motif group
homologous
IL_8C3A_008
IL_95997.1
IL_6N8J_0081/1/163:165,
1/1/257:258
Single stack bend
Not in a motif group
homologous
IL_5TBW_009
IL_76488.2
IL_6N8J_0091/1/169:170,
1/1/248:253
No text annotation
Not in a motif group
homologous
IL_5TBW_010
IL_74684.1
IL_6N8J_0101/1/177:179,
1/1/237:241
Major groove platform with extra pair
Not in a motif group
homologous
IL_5TBW_011
IL_63450.2
IL_6N8J_0111/1/189:191,
1/1/204:205
Single bulged U
Not in a motif group
homologous
IL_5TBW_012
IL_83039.13
IL_6N8J_0121/1/337:339,
1/3/25:26
No text annotation
Not in a motif group
homologous
IL_8C3A_014
IL_37497.2
IL_6N8J_0131/1/376:379,
1/1/390:403
No text annotation
Not in a motif group
geometric
IL_5TBW_014
IL_60992.6
IL_6N8J_0141/1/404:410,
1/3/13:19
Triple sheared with non-canonical cWW
Not in a motif group
homologous
IL_5TBW_015
IL_66414.6
IL_6N8J_0151/1/429:431,
1/1/628:630
No text annotation
Not in a motif group
homologous
IL_5TBW_016
IL_51629.2
IL_6N8J_0171/1/512:513,
1/1/577:579
No text annotation
Not in a motif group
homologous
IL_8C3A_020
IL_37497.2
IL_6N8J_0181/1/517:525,
1/1/567:573
No text annotation
Not in a motif group
homologous
IL_5TBW_019
IL_23992.1
IL_6N8J_0191/1/531:538,
1/1/553:561
No text annotation
Not in a motif group
homologous
IL_5TBW_020
IL_07703.1
IL_6N8J_0201/1/668:670,
1/1/792:794
No text annotation
Not in a motif group
homologous
IL_8C3A_023
IL_95997.1
IL_6N8J_0211/1/680:684,
1/1/696:700
No text annotation
Not in a motif group
homologous
IL_5TBW_022
IL_74284.1
IL_6N8J_0221/1/725:728,
1/1/741:745
UAA/GAN
Not in a motif group
homologous
IL_5TBW_023
IL_07235.1
IL_6N8J_0231/1/752:753,
1/1/779:781
No text annotation
Not in a motif group
homologous
IL_8C3A_026
IL_37497.2
IL_6N8J_0241/1/755:756,
1/1/775:777
No text annotation
Not in a motif group
homologous
IL_8C3A_027
IL_83039.13
IL_6N8J_0261/1/803:805,
1/1/938:940
No text annotation
Not in a motif group
geometric
IL_5TBW_027
IL_95997.1
IL_6N8J_0271/1/805:809,
1/1/931:938
No text annotation
Not in a motif group
homologous
IL_5TBW_028
IL_17470.6
IL_6N8J_0331/1/954:956,
1/1/965:967
No text annotation
Not in a motif group
homologous
IL_5TBW_034
IL_95997.1
IL_6N8J_0341/1/969:970,
1/1/1111:1113
No text annotation
Not in a motif group
homologous
IL_8C3A_038
IL_76488.2
IL_6N8J_0351/1/977:982,
1/1/1101:1104
No text annotation
Not in a motif group
homologous
IL_8C3A_039
IL_59027.1
IL_6N8J_0361/1/983:985,
1/1/1099:1100
No text annotation
Not in a motif group
homologous
IL_8C3A_040
IL_00225.2
IL_6N8J_0391/1/1120:1122,
1/1/1136:1138
No text annotation
Not in a motif group
homologous
IL_5TBW_046
IL_95997.1
IL_6N8J_0401/1/1167:1171,
1/1/1328:1332
UAA/GAN
Not in a motif group
homologous
IL_5TBW_048
IL_89002.2
IL_6N8J_0411/1/1173:1180,
1/1/1325:1326
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_5TBW_049
IL_15861.7
IL_6N8J_0421/1/1180:1182,
1/1/1324:1325
Single bulged U
Not in a motif group
geometric
IL_5TBW_050
IL_83039.13
IL_6N8J_0431/1/1187:1194,
1/1/1314:1319
No text annotation
Not in a motif group
homologous
IL_5TBW_051
IL_27086.1
IL_6N8J_0441/1/1194:1205,
1/1/1299:1314
No text annotation
Not in a motif group
geometric
IL_5TBW_052
IL_53762.1
IL_6N8J_0451/1/1207:1209,
1/1/1296:1297
Single bulged U
Not in a motif group
homologous
IL_5TBW_053
IL_83039.13
IL_6N8J_0461/1/1218:1226,
1/1/1283:1287
Kink-turn
Not in a motif group
homologous
IL_5TBW_054
IL_90538.4
IL_6N8J_0491/1/1376:1378,
1/1/1428:1431
Isolated cWS basepair
Not in a motif group
homologous
IL_5TBW_057
IL_52767.2
IL_6N8J_0501/1/1385:1387,
1/1/1420:1421
Single bulged A
Not in a motif group
homologous
IL_5TBW_058
IL_37497.2
IL_6N8J_0511/1/1388:1395,
1/1/1415:1419
Kink-turn
Not in a motif group
homologous
IL_5TBW_059
IL_70923.2
IL_6N8J_0521/1/1398:1400,
1/1/1411:1412
Single bulged A
Not in a motif group
homologous
IL_5TBW_060
IL_37497.2
IL_6N8J_0531/1/1444:1450,
1/1/2354:2359
7x6 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5TBW_061
IL_76042.2
IL_6N8J_0821/1/2391:2394,
1/1/2986:2988
Major groove platform with extra pair
Not in a motif group
homologous
IL_5TBW_091
IL_63450.2
IL_6N8J_0901/1/2835:2839,
1/1/2849:2853
Triple sheared
Not in a motif group
geometric
IL_4WFL_001
IL_56467.8
IL_6N8J_0911/1/2879:2881,
1/1/2943:2947
Isolated non-canonical cWW with bulges
Not in a motif group
geometric
IL_5TBW_108
IL_90933.2
IL_6N8J_0921/1/2881:2882,
1/1/2940:2943
No text annotation
Not in a motif group
homologous
IL_8C3A_117
IL_71530.2
IL_6N8J_0931/1/2889:2891,
1/1/2912:2914
No text annotation
Not in a motif group
geometric
IL_4KR9_001
IL_51629.2
IL_6N8J_0941/1/2891:2893,
1/1/2908:2912
No text annotation
Not in a motif group
IL_6N8J_0961/1/3004:3007,
1/1/3139:3144
Double sheared
Not in a motif group
homologous
IL_5TBW_114
IL_09705.9
IL_6N8J_0971/1/3012:3014,
1/1/3040:3042
No text annotation
Not in a motif group
homologous
IL_8C3A_124
IL_95997.1
IL_6N8J_0981/1/3018:3025,
1/1/3030:3036
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
geometric
IL_5TBW_116
IL_04346.7
IL_6N8J_0991/1/3046:3051,
1/1/3091:3095
No text annotation
Not in a motif group
IL_6N8J_1001/1/3054:3059,
1/1/3084:3088
No text annotation
Not in a motif group
homologous
IL_8C3A_127
IL_17136.1
IL_6N8J_1011/1/3063:3064,
1/1/3077:3080
Multiple bulged bases
Not in a motif group
homologous
IL_5TBW_119
IL_71530.2
IL_6N8J_1021/1/3103:3107,
1/1/3127:3131
UAA/GAN
Not in a motif group
homologous
IL_5TBW_120
IL_89002.2
IL_6N8J_1051/1/3177:3179,
1/1/3210:3211
Single bulged A
Not in a motif group
homologous
IL_5TBW_123
IL_37497.2
IL_6N8J_1061/1/3179:3188,
1/1/3204:3210
No text annotation
Not in a motif group
geometric
IL_5TBW_124
IL_15174.1
IL_6N8J_1071/1/3193:3194,
1/1/3197:3199
Single bulged U
Not in a motif group
geometric
IL_5TBW_125
IL_83039.13
IL_6N8J_1081/1/3225:3229,
1/1/3258:3260
No text annotation
Not in a motif group
homologous
IL_5TBW_126
IL_19389.6
IL_6N8J_1091/1/3233:3235,
1/1/3252:3254
No text annotation
Not in a motif group
geometric
IL_5TBW_042
IL_95997.1
IL_6N8J_1101/1/3235:3238,
1/1/3249:3252
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5TBW_128
IL_30621.2
IL_6N8J_1111/1/3318:3320,
1/1/3387:3388
Single bulged U
Not in a motif group
homologous
IL_5TBW_130
IL_83039.13
IL_6N8J_1121/1/3324:3325,
1/1/3381:3383
Single bulged U
Not in a motif group
homologous
IL_5TBW_131
IL_83039.13
IL_6N8J_1131/1/3328:3330,
1/1/3373:3378
No text annotation
Not in a motif group
homologous
IL_8C3A_138
IL_90933.2
IL_6N8J_1141/1/3332:3337,
1/1/3367:3371
No text annotation
Not in a motif group
homologous
IL_5TBW_133
IL_83162.5
IL_6N8J_1151/1/3340:3342,
1/1/3363:3364
Single bulged U
Not in a motif group
geometric
IL_2R8S_004
IL_83039.13
IL_6N8J_1161/1/3342:3345,
1/1/3360:3363
No text annotation
Not in a motif group
homologous
IL_8C3A_141
IL_09705.9
IL_6N8J_1171/2/15:16,
1/2/63:65
Single bulged A
Not in a motif group
homologous
IL_5TBW_372
IL_37497.2
IL_6N8J_1181/2/21:29,
1/2/49:58
No text annotation
Not in a motif group
IL_6N8J_1191/2/29:30,
1/2/47:49
Single stack bend
Not in a motif group
homologous
IL_5TBW_375
IL_76488.2
IL_6N8J_1201/2/32:36,
1/2/41:45
Symmetric double minor groove platform
Not in a motif group
homologous
IL_5TBW_376
IL_58103.6
IL_6N8J_1211/2/72:80,
1/2/100:106
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5TBW_377
IL_04346.7
IL_6N8J_1221/2/84:87,
1/2/94:96
No text annotation
Not in a motif group
homologous
IL_5TBW_378
IL_95997.1
IL_6N8J_1231/3/44:64,
1/3/96:100
No text annotation
Not in a motif group
geometric
IL_5TBW_144
IL_44998.1
IL_6N8J_1241/3/64:66,
1/3/93:96
Isolated non-canonical cWW with bulges
Not in a motif group
geometric
IL_5TBW_145
IL_82068.2
IL_6N8J_1251/3/68:69,
1/3/89:91
Single bulged U
Not in a motif group
geometric
IL_5TBW_146
IL_83039.13

Problematic loops

#loop idProblemSequence
IL_6N8J_016No text annotation
IL_6N8J_025No text annotation
IL_6N8J_028Single bulged G
IL_6N8J_029Triple sheared
IL_6N8J_030Major groove platform with extra cWW
IL_6N8J_031Single bulged U
IL_6N8J_032No text annotation
IL_6N8J_037Tandem non-canonical cWW pairs
IL_6N8J_038Single bulged A
IL_6N8J_047No text annotation
IL_6N8J_048Major groove platform with extra cWW
IL_6N8J_054No text annotation
IL_6N8J_055No text annotation
IL_6N8J_056No text annotation
IL_6N8J_057No text annotation
IL_6N8J_058Multiple bulged bases with near cWW
IL_6N8J_059No text annotation
IL_6N8J_060Triple sheared
IL_6N8J_061No text annotation
IL_6N8J_062Single bulged C
IL_6N8J_063Single stack bend
IL_6N8J_064No text annotation
IL_6N8J_065No text annotation
IL_6N8J_066Kink-turn
IL_6N8J_067No text annotation
IL_6N8J_068No text annotation
IL_6N8J_069No text annotation
IL_6N8J_070Intercalated tWH
IL_6N8J_071tSH-tSH-tHH-tHS
IL_6N8J_072No text annotation
IL_6N8J_073No text annotation
IL_6N8J_074No text annotation
IL_6N8J_075Kink-turn related
IL_6N8J_076No text annotation
IL_6N8J_077No text annotation
IL_6N8J_078No text annotation
IL_6N8J_079Single bulged U
IL_6N8J_080Major groove platform with extra pair
IL_6N8J_081No text annotation
IL_6N8J_083No text annotation
IL_6N8J_084Minor groove platform
IL_6N8J_085Isolated tHS basepair with bulges
IL_6N8J_086No text annotation
IL_6N8J_087Isolated tHS basepair with bulges
IL_6N8J_088Tandem non-canonical cWW pairs
IL_6N8J_089No text annotation
IL_6N8J_095Minor groove platform
IL_6N8J_103No text annotation
IL_6N8J_104No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6N8J_0011/1/113:123,
1/1/149:158,
1/1/263:267
No text annotation
Not in a motif group
J3_6N8J_0021/1/369:376,
1/1/403:404,
1/3/19:20
No text annotation
Not in a motif group
homologous
J3_5TBW_002
NA
J3_6N8J_0031/1/501:503,
1/1/588:597,
1/1/606:612
No text annotation
Not in a motif group
J3_6N8J_0061/1/986:987,
1/1/1062:1066,
1/1/1092:1098
No text annotation
Not in a motif group
homologous
J3_5TBW_006
NA
J3_6N8J_0141/1/2886:2889,
1/1/2914:2916,
1/1/2930:2936
No text annotation
Not in a motif group
J3_6N8J_0151/1/3298:3303,
1/1/3311:3318,
1/1/3388:3390
No text annotation
Not in a motif group
J3_6N8J_0161/2/9:14,
1/2/66:68,
1/2/110:112
No text annotation
Not in a motif group

Problematic loops

#loop idProblemSequence
J3_6N8J_004No text annotation
J3_6N8J_005No text annotation
J3_6N8J_007No text annotation
J3_6N8J_008No text annotation
J3_6N8J_009No text annotation
J3_6N8J_010No text annotation
J3_6N8J_011No text annotation
J3_6N8J_012No text annotation
J3_6N8J_013No text annotation

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