6S0X Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6S0X_001 | 1/A/59:68 | No text annotation Not in a motif group | homologous HL_7A0S_001 HL_99167.1 | |
| HL_6S0X_002 | 1/A/81:104 | No text annotation Not in a motif group | ||
| HL_6S0X_003 | 1/A/122:127 | No text annotation Not in a motif group | homologous HL_4WF9_003 HL_75407.1 | |
| HL_6S0X_004 | 1/A/136:143 | No text annotation Not in a motif group | homologous HL_4WF9_004 HL_84085.2 | |
| HL_6S0X_005 | 1/A/157:171 | No text annotation Not in a motif group | ||
| HL_6S0X_006 | 1/A/197:204 | No text annotation Not in a motif group | homologous HL_4WF9_006 HL_06192.2 | |
| HL_6S0X_007 | 1/A/227:234 | No text annotation Not in a motif group | ||
| HL_6S0X_008 | 1/A/249:255 | No text annotation Not in a motif group | homologous HL_5J7L_141 HL_67216.7 | |
| HL_6S0X_009 | 1/A/283:288 | No text annotation Not in a motif group | geometric HL_5FMZ_001 HL_27930.1 | |
| HL_6S0X_010 | 1/A/348:355 | No text annotation Not in a motif group | ||
| HL_6S0X_011 | 1/A/370:378 | No text annotation Not in a motif group | ||
| HL_6S0X_012 | 1/A/421:445 | No text annotation Not in a motif group | ||
| HL_6S0X_013 | 1/A/456:463 | No text annotation Not in a motif group | homologous HL_7RQB_014 HL_96598.1 | |
| HL_6S0X_014 | 1/A/508:513 | No text annotation Not in a motif group | homologous HL_7RQB_015 HL_42097.1 | |
| HL_6S0X_015 | 1/A/533:538 | GNRA Not in a motif group | homologous HL_4WF9_016 HL_42097.1 | |
| HL_6S0X_016 | 1/A/587:594 | No text annotation Not in a motif group | ||
| HL_6S0X_017 | 1/A/609:618 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_4WF9_018 HL_89380.2 | |
| HL_6S0X_018 | 1/A/655:661 | No text annotation Not in a motif group | geometric HL_5U3G_001 HL_87030.2 | |
| HL_6S0X_019 | 1/A/674:679 | No text annotation Not in a motif group | homologous HL_7RQB_020 HL_42097.1 | |
| HL_6S0X_020 | 1/A/686:692 | GNRA with one bulged base Not in a motif group | homologous HL_4WF9_021 HL_42097.1 | |
| HL_6S0X_021 | 1/A/755:766 | No text annotation Not in a motif group | ||
| HL_6S0X_022 | 1/A/789:798 | No text annotation Not in a motif group | homologous HL_7A0S_022 HL_39334.6 | |
| HL_6S0X_023 | 1/A/823:831 | No text annotation Not in a motif group | ||
| HL_6S0X_024 | 1/A/871:876 | No text annotation Not in a motif group | geometric HL_4WF9_037 HL_94803.1 | |
| HL_6S0X_025 | 1/A/925:942 | No text annotation Not in a motif group | geometric HL_3IGI_004 HL_30784.2 | |
| HL_6S0X_026 | 1/A/998:1007 | No text annotation Not in a motif group | ||
| HL_6S0X_027 | 1/A/1022:1029 | No text annotation Not in a motif group | ||
| HL_6S0X_028 | 1/A/1108:1118 | No text annotation Not in a motif group | ||
| HL_6S0X_029 | 1/A/1213:1218 | No text annotation Not in a motif group | ||
| HL_6S0X_030 | 1/A/1260:1265 | No text annotation Not in a motif group | geometric HL_3HHN_007 HL_76539.2 | |
| HL_6S0X_031 | 1/A/1318:1326 | No text annotation Not in a motif group | homologous HL_7A0S_032 HL_89380.2 | |
| HL_6S0X_032 | 1/A/1360:1368 | No text annotation Not in a motif group | geometric HL_7A0S_041 HL_26881.1 | |
| HL_6S0X_033 | 1/A/1400:1405 | Other HL Not in a motif group | homologous HL_5J7L_167 HL_87030.2 | |
| HL_6S0X_034 | 1/A/1426:1435 | No text annotation Not in a motif group | homologous HL_4WF9_035 HL_69023.2 | |
| HL_6S0X_035 | 1/A/1535:1541 | No text annotation Not in a motif group | homologous HL_5J7L_170 HL_46680.1 | |
| HL_6S0X_036 | 1/A/1612:1615 | No text annotation Not in a motif group | homologous HL_7RQB_039 HL_38927.2 | |
| HL_6S0X_037 | 1/A/1656:1663 | No text annotation Not in a motif group | homologous HL_7RQB_040 HL_64430.2 | |
| HL_6S0X_038 | 1/A/1673:1681 | No text annotation Not in a motif group | homologous HL_4WF9_039 HL_92229.2 | |
| HL_6S0X_039 | 1/A/1735:1740 | UNCG Not in a motif group | geometric HL_4V9F_044 HL_03562.2 | |
| HL_6S0X_040 | 1/A/1760:1769 | No text annotation Not in a motif group | ||
| HL_6S0X_041 | 1/A/1779:1783 | No text annotation Not in a motif group | homologous HL_7RQB_044 HL_76539.2 | |
| HL_6S0X_042 | 1/A/1803:1815 | No text annotation Not in a motif group | ||
| HL_6S0X_043 | 1/A/1833:1838 | No text annotation Not in a motif group | homologous HL_7RQB_046 HL_42097.1 | |
| HL_6S0X_044 | 1/A/1891:1905 | No text annotation Not in a motif group | ||
| HL_6S0X_045 | 1/A/1937:1947 | No text annotation Not in a motif group | ||
| HL_6S0X_046 | 1/A/1976:1984 | No text annotation Not in a motif group | homologous HL_5J7L_182 HL_51824.1 | |
| HL_6S0X_047 | 1/A/2054:2063 | No text annotation Not in a motif group | ||
| HL_6S0X_048 | 1/A/2168:2177 | No text annotation Not in a motif group | ||
| HL_6S0X_049 | 1/A/2236:2242 | No text annotation Not in a motif group | homologous HL_5J7L_185 HL_16845.6 | |
| HL_6S0X_050 | 1/A/2291:2303 | No text annotation Not in a motif group | homologous HL_4WF9_050 HL_19870.6 | |
| HL_6S0X_052 | 1/A/2351:2358 | No text annotation Not in a motif group | homologous HL_4WF9_052 HL_12078.2 | |
| HL_6S0X_053 | 1/A/2382:2389 | No text annotation Not in a motif group | homologous HL_4WF9_053 HL_09136.1 | |
| HL_6S0X_054 | 1/A/2401:2406 | No text annotation Not in a motif group | homologous HL_7A0S_057 HL_42097.1 | |
| HL_6S0X_055 | 1/A/2431:2440 | No text annotation Not in a motif group | ||
| HL_6S0X_056 | 1/A/2498:2506 | No text annotation Not in a motif group | homologous HL_7RQB_060 HL_06192.2 | |
| HL_6S0X_057 | 1/A/2555:2562 | No text annotation Not in a motif group | homologous HL_5J7L_194 HL_88526.2 | |
| HL_6S0X_058 | 1/A/2577:2585 | No text annotation Not in a motif group | ||
| HL_6S0X_059 | 1/A/2621:2626 | GNRA Not in a motif group | homologous HL_5J7L_196 HL_42097.1 | |
| HL_6S0X_060 | 1/A/2685:2690 | GNRA Not in a motif group | geometric HL_3P22_001 HL_42097.1 | |
| HL_6S0X_061 | 1/A/2728:2733 | Ribsomal LSU H95 Not in a motif group | homologous HL_4WF9_061 HL_46680.1 | |
| HL_6S0X_062 | 1/A/2772:2786 | No text annotation Not in a motif group | homologous HL_5J7L_199 HL_56677.7 | |
| HL_6S0X_063 | 1/A/2839:2847 | No text annotation Not in a motif group | homologous HL_4WF9_064 HL_27930.1 | |
| HL_6S0X_064 | 1/A/2876:2881 | Other HL Not in a motif group | homologous HL_5J7L_202 HL_42097.1 | |
| HL_6S0X_065 | 1/B/36:42 | No text annotation Not in a motif group | geometric HL_5J7L_203 HL_87939.1 | |
| HL_6S0X_066 | 1/B/83:88 | No text annotation Not in a motif group | homologous HL_5J7L_204 HL_38927.2 | |
| HL_6S0X_067 | 1/a/13:23 | No text annotation Not in a motif group | homologous HL_4LFB_001 HL_89881.2 | |
| HL_6S0X_068 | 1/a/72:97 | No text annotation Not in a motif group | ||
| HL_6S0X_069 | 1/a/158:163 | GNRA Not in a motif group | homologous HL_4LFB_003 HL_42097.1 | |
| HL_6S0X_070 | 1/a/187:203 | No text annotation Not in a motif group | ||
| HL_6S0X_071 | 1/a/213:226 | No text annotation Not in a motif group | ||
| HL_6S0X_072 | 1/a/267:275 | No text annotation Not in a motif group | homologous HL_4LFB_006 HL_69023.2 | |
| HL_6S0X_073 | 1/a/304:309 | GNRA Not in a motif group | homologous HL_5J7L_007 HL_42097.1 | |
| HL_6S0X_074 | 1/a/328:341 | No text annotation Not in a motif group | homologous HL_5J7L_008 HL_81205.2 | |
| HL_6S0X_075 | 1/a/350:355 | No text annotation Not in a motif group | homologous HL_6CZR_080 HL_03562.2 | |
| HL_6S0X_076 | 1/a/386:393 | No text annotation Not in a motif group | ||
| HL_6S0X_077 | 1/a/427:432 | No text annotation Not in a motif group | ||
| HL_6S0X_078 | 1/a/469:480 | No text annotation Not in a motif group | ||
| HL_6S0X_079 | 1/a/530:535 | No text annotation Not in a motif group | geometric HL_4YAZ_004 HL_56691.2 | |
| HL_6S0X_080 | 1/a/625:631 | No text annotation Not in a motif group | homologous HL_5J7L_014 HL_26881.1 | |
| HL_6S0X_081 | 1/a/697:706 | No text annotation Not in a motif group | homologous HL_5J7L_015 HL_12326.1 | |
| HL_6S0X_082 | 1/a/734:739 | Other HL Not in a motif group | homologous HL_4LFB_016 HL_87030.2 | |
| HL_6S0X_083 | 1/a/794:804 | No text annotation Not in a motif group | ||
| HL_6S0X_084 | 1/a/848:855 | No text annotation Not in a motif group | homologous HL_5J7L_018 HL_34168.2 | |
| HL_6S0X_085 | 1/a/871:876 | GNRA Not in a motif group | homologous HL_5J7L_019 HL_42097.1 | |
| HL_6S0X_086 | 1/a/906:911 | GNRA Not in a motif group | homologous HL_4LFB_020 HL_42097.1 | |
| HL_6S0X_087 | 1/a/972:981 | No text annotation Not in a motif group | ||
| HL_6S0X_088 | 1/a/1021:1026 | No text annotation Not in a motif group | geometric HL_5U3G_001 HL_87030.2 | |
| HL_6S0X_089 | 1/a/1038:1043 | No text annotation Not in a motif group | ||
| HL_6S0X_090 | 1/a/1087:1092 | GNRA Not in a motif group | homologous HL_4LFB_024 HL_42097.1 | |
| HL_6S0X_091 | 1/a/1100:1107 | No text annotation Not in a motif group | homologous HL_6CZR_096 HL_71554.2 | |
| HL_6S0X_092 | 1/a/1144:1151 | No text annotation Not in a motif group | ||
| HL_6S0X_093 | 1/a/1174:1182 | No text annotation Not in a motif group | ||
| HL_6S0X_094 | 1/a/1275:1280 | GNRA Not in a motif group | homologous HL_5J7L_027 HL_42097.1 | |
| HL_6S0X_095 | 1/a/1324:1333 | No text annotation Not in a motif group | homologous HL_4LFB_029 HL_89380.2 | |
| HL_6S0X_096 | 1/a/1366:1376 | No text annotation Not in a motif group | homologous HL_4LFB_030 HL_96366.1 | |
| HL_6S0X_097 | 1/a/1455:1468 | No text annotation Not in a motif group | ||
| HL_6S0X_098 | 1/a/1526:1531 | GNRA Not in a motif group | geometric HL_5TPY_006 HL_42097.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6S0X_051 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6S0X_001 | 1/A/24:30, 1/A/555:561 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_5J7L_245 IL_66414.6 | |
| IL_6S0X_002 | 1/A/36:37, 1/A/488:490 | No text annotation Not in a motif group | ||
| IL_6S0X_003 | 1/A/152:153, 1/A/175:177 | No text annotation Not in a motif group | ||
| IL_6S0X_004 | 1/A/186:187, 1/A/215:217 | Single stack bend Not in a motif group | homologous IL_4WF9_007 IL_76488.2 | |
| IL_6S0X_005 | 1/A/190:197, 1/A/204:212 | No text annotation Not in a motif group | ||
| IL_6S0X_006 | 1/A/241:248, 1/A/256:262 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7A0S_007 IL_04346.7 | |
| IL_6S0X_007 | 1/A/302:303, 1/A/413:415 | Single stack bend Not in a motif group | geometric IL_5J7L_269 IL_76488.2 | |
| IL_6S0X_008 | 1/A/303:307, 1/A/408:413 | No text annotation Not in a motif group | ||
| IL_6S0X_009 | 1/A/580:584, 1/A/597:601 | No text annotation Not in a motif group | ||
| IL_6S0X_010 | 1/A/631:634, 1/A/711:713 | No text annotation Not in a motif group | ||
| IL_6S0X_011 | 1/A/637:640, 1/A/705:708 | No text annotation Not in a motif group | ||
| IL_6S0X_012 | 1/A/642:644, 1/A/701:703 | No text annotation Not in a motif group | ||
| IL_6S0X_013 | 1/A/647:653, 1/A/663:669 | No text annotation Not in a motif group | ||
| IL_6S0X_014 | 1/A/717:719, 1/A/851:853 | No text annotation Not in a motif group | geometric IL_7RQB_017 IL_95997.1 | |
| IL_6S0X_015 | 1/A/719:723, 1/A/844:851 | No text annotation Not in a motif group | homologous IL_7A0S_015 IL_17470.6 | |
| IL_6S0X_016 | 1/A/742:743, 1/A/808:810 | Single bulged A Not in a motif group | geometric IL_4WF9_022 IL_37497.2 | |
| IL_6S0X_017 | 1/A/747:748, 1/A/773:775 | Single bulged G Not in a motif group | geometric IL_4V9F_026 IL_00225.2 | |
| IL_6S0X_018 | 1/A/748:752, 1/A/769:773 | Triple sheared Not in a motif group | homologous IL_4WF9_024 IL_56467.8 | |
| IL_6S0X_019 | 1/A/783:785, 1/A/802:803 | Major groove platform Not in a motif group | homologous IL_4WF9_026 IL_27635.1 | |
| IL_6S0X_020 | 1/A/820:822, 1/A/832:836 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_265 IL_90991.6 | |
| IL_6S0X_021 | 1/A/881:883, 1/A/984:987 | No text annotation Not in a motif group | ||
| IL_6S0X_022 | 1/A/889:894, 1/A/974:978 | No text annotation Not in a motif group | ||
| IL_6S0X_023 | 1/A/907:914, 1/A/953:960 | No text annotation Not in a motif group | ||
| IL_6S0X_024 | 1/A/920:924, 1/A/943:947 | Triple sheared Not in a motif group | homologous IL_5J7L_274 IL_56467.8 | |
| IL_6S0X_025 | 1/A/1038:1041, 1/A/1202:1204 | No text annotation Not in a motif group | ||
| IL_6S0X_026 | 1/A/1042:1046, 1/A/1197:1201 | UAA/GAN Not in a motif group | homologous IL_7RQB_036 IL_89002.2 | |
| IL_6S0X_027 | 1/A/1048:1057, 1/A/1193:1195 | No text annotation Not in a motif group | ||
| IL_6S0X_028 | 1/A/1061:1068, 1/A/1184:1189 | No text annotation Not in a motif group | ||
| IL_6S0X_029 | 1/A/1068:1075, 1/A/1167:1184 | No text annotation Not in a motif group | ||
| IL_6S0X_030 | 1/A/1075:1078, 1/A/1165:1167 | No text annotation Not in a motif group | ||
| IL_6S0X_031 | 1/A/1079:1083, 1/A/1160:1164 | No text annotation Not in a motif group | ||
| IL_6S0X_032 | 1/A/1212:1213, 1/A/1218:1220 | No text annotation Not in a motif group | ||
| IL_6S0X_033 | 1/A/1243:1245, 1/A/1277:1279 | Isolated cWH basepair Not in a motif group | homologous IL_4WF9_045 IL_51629.2 | |
| IL_6S0X_034 | 1/A/1246:1254, 1/A/1271:1276 | No text annotation Not in a motif group | ||
| IL_6S0X_035 | 1/A/1257:1260, 1/A/1265:1268 | No text annotation Not in a motif group | ||
| IL_6S0X_036 | 1/A/1300:1307, 1/A/2038:2044 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_4WF9_048 IL_04346.7 | |
| IL_6S0X_037 | 1/A/1356:1360, 1/A/1368:1370 | C-loop Not in a motif group | homologous IL_5J7L_291 IL_63596.6 | |
| IL_6S0X_038 | 1/A/1388:1392, 1/A/1413:1417 | UAA/GAN Not in a motif group | homologous IL_5J7L_292 IL_89002.2 | |
| IL_6S0X_039 | 1/A/1394:1398, 1/A/1407:1411 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_293 IL_17136.1 | |
| IL_6S0X_040 | 1/A/1447:1451, 1/A/1634:1636 | No text annotation Not in a motif group | ||
| IL_6S0X_041 | 1/A/1451:1465, 1/A/1624:1634 | No text annotation Not in a motif group | ||
| IL_6S0X_042 | 1/A/1476:1479, 1/A/1604:1608 | No text annotation Not in a motif group | ||
| IL_6S0X_043 | 1/A/1511:1516, 1/A/1564:1570 | No text annotation Not in a motif group | homologous IL_4WF9_058 IL_88190.1 | |
| IL_6S0X_044 | 1/A/1518:1523, 1/A/1557:1562 | No text annotation Not in a motif group | geometric IL_4N0T_001 IL_86929.2 | |
| IL_6S0X_045 | 1/A/1524:1526, 1/A/1549:1556 | No text annotation Not in a motif group | ||
| IL_6S0X_046 | 1/A/1532:1534, 1/A/1542:1543 | No text annotation Not in a motif group | ||
| IL_6S0X_047 | 1/A/1695:1701, 1/A/2029:2033 | No text annotation Not in a motif group | ||
| IL_6S0X_048 | 1/A/1701:1706, 1/A/2024:2029 | No text annotation Not in a motif group | geometric IL_6O5F_001 IL_04668.1 | |
| IL_6S0X_049 | 1/A/1706:1709, 1/A/2022:2024 | No text annotation Not in a motif group | ||
| IL_6S0X_050 | 1/A/1710:1713, 1/A/2020:2021 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_5J7L_306 IL_50694.2 | |
| IL_6S0X_051 | 1/A/1713:1718, 1/A/2017:2020 | Intercalated tWH Not in a motif group | homologous IL_4WF9_065 IL_82842.2 | |
| IL_6S0X_052 | 1/A/1730:1735, 1/A/1740:1746 | tSH-tSH-tHH-tHS Not in a motif group | homologous IL_7A0S_063 IL_65969.2 | |
| IL_6S0X_053 | 1/A/1755:1759, 1/A/1770:1774 | No text annotation Not in a motif group | ||
| IL_6S0X_054 | 1/A/1797:1798, 1/A/2007:2009 | Single bulged A Not in a motif group | homologous IL_5J7L_312 IL_37497.2 | |
| IL_6S0X_055 | 1/A/1825:1831, 1/A/1840:1848 | Kink-turn related Not in a motif group | homologous IL_7RQB_070 IL_17069.3 | |
| IL_6S0X_056 | 1/A/1864:1867, 1/A/1929:1930 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_314 IL_88739.1 | |
| IL_6S0X_057 | 1/A/1868:1869, 1/A/1925:1928 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_315 IL_16396.2 | |
| IL_6S0X_058 | 1/A/1873:1876, 1/A/1919:1921 | No text annotation Not in a motif group | geometric IL_4V9F_072 IL_63450.2 | |
| IL_6S0X_059 | 1/A/1876:1882, 1/A/1914:1919 | No text annotation Not in a motif group | ||
| IL_6S0X_060 | 1/A/1883:1887, 1/A/1909:1913 | Triple sheared Not in a motif group | homologous IL_7RQB_075 IL_56467.8 | |
| IL_6S0X_061 | 1/A/1961:1972, 1/A/1988:1991 | No text annotation Not in a motif group | homologous IL_4WF9_077 IL_81589.2 | |
| IL_6S0X_062 | 1/A/2077:2079, 1/A/2644:2645 | Major groove platform Not in a motif group | homologous IL_7A0S_073 IL_27635.1 | |
| IL_6S0X_063 | 1/A/2080:2083, 1/A/2638:2643 | No text annotation Not in a motif group | ||
| IL_6S0X_064 | 1/A/2094:2096, 1/A/2469:2470 | Single bulged U Not in a motif group | homologous IL_7A0S_075 IL_83039.13 | |
| IL_6S0X_065 | 1/A/2097:2098, 1/A/2465:2468 | Minor groove platform Not in a motif group | homologous IL_7RQB_081 IL_42622.2 | |
| IL_6S0X_066 | 1/A/2108:2110, 1/A/2263:2266 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_4WF9_082 IL_38958.7 | |
| IL_6S0X_067 | 1/A/2123:2125, 1/A/2218:2220 | No text annotation Not in a motif group | geometric IL_2O3V_004 IL_95997.1 | |
| IL_6S0X_069 | 1/A/2151:2154, 1/A/2188:2201 | No text annotation Not in a motif group | ||
| IL_6S0X_070 | 1/A/2156:2168, 1/A/2177:2186 | No text annotation Not in a motif group | ||
| IL_6S0X_071 | 1/A/2229:2231, 1/A/2247:2248 | Single bulged G Not in a motif group | geometric IL_3NDB_004 IL_00225.2 | |
| IL_6S0X_072 | 1/A/2324:2326, 1/A/2344:2348 | No text annotation Not in a motif group | ||
| IL_6S0X_073 | 1/A/2375:2380, 1/A/2391:2396 | No text annotation Not in a motif group | ||
| IL_6S0X_074 | 1/A/2427:2430, 1/A/2441:2443 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5TBW_145 IL_82068.2 | |
| IL_6S0X_075 | 1/A/2484:2486, 1/A/2520:2521 | No text annotation Not in a motif group | ||
| IL_6S0X_076 | 1/A/2486:2489, 1/A/2515:2520 | No text annotation Not in a motif group | ||
| IL_6S0X_077 | 1/A/2493:2497, 1/A/2507:2511 | Triple sheared Not in a motif group | homologous IL_7A0S_087 IL_56467.8 | |
| IL_6S0X_078 | 1/A/2534:2535, 1/A/2607:2609 | Major groove platform Not in a motif group | homologous IL_7A0S_088 IL_76223.2 | |
| IL_6S0X_079 | 1/A/2537:2539, 1/A/2601:2605 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_4WF9_095 IL_90933.2 | |
| IL_6S0X_080 | 1/A/2539:2540, 1/A/2598:2601 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_098 IL_71530.2 | |
| IL_6S0X_081 | 1/A/2549:2550, 1/A/2567:2570 | No text annotation Not in a motif group | ||
| IL_6S0X_082 | 1/A/2618:2619, 1/A/2628:2630 | No text annotation Not in a motif group | ||
| IL_6S0X_083 | 1/A/2663:2667, 1/A/2801:2809 | tSH-tHS-tHW Not in a motif group | homologous IL_7RQB_102 IL_04638.1 | |
| IL_6S0X_084 | 1/A/2679:2685, 1/A/2690:2695 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | homologous IL_7RQB_103 IL_16458.1 | |
| IL_6S0X_085 | 1/A/2707:2711, 1/A/2752:2754 | C-loop Not in a motif group | homologous IL_4WF9_101 IL_63596.6 | |
| IL_6S0X_086 | 1/A/2714:2718, 1/A/2745:2749 | No text annotation Not in a motif group | homologous IL_4WF9_102 IL_08296.3 | |
| IL_6S0X_087 | 1/A/2722:2723, 1/A/2738:2741 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_349 IL_71530.2 | |
| IL_6S0X_088 | 1/A/2764:2769, 1/A/2789:2794 | UAA/GAN with extra cWW Not in a motif group | homologous IL_7A0S_098 IL_49767.5 | |
| IL_6S0X_089 | 1/A/2816:2831, 1/A/2909:2913 | No text annotation Not in a motif group | ||
| IL_6S0X_090 | 1/A/2858:2860, 1/A/2897:2900 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_4V9F_097 IL_82068.2 | |
| IL_6S0X_091 | 1/A/2862:2866, 1/A/2890:2895 | No text annotation Not in a motif group | ||
| IL_6S0X_092 | 1/A/2866:2872, 1/A/2885:2890 | No text annotation Not in a motif group | ||
| IL_6S0X_093 | 1/B/15:16, 1/B/63:65 | Major groove intercalation Not in a motif group | homologous IL_4WF9_112 IL_37497.2 | |
| IL_6S0X_094 | 1/B/21:29, 1/B/49:58 | No text annotation Not in a motif group | ||
| IL_6S0X_095 | 1/B/32:36, 1/B/42:46 | Symmetric double minor groove platform Not in a motif group | homologous IL_7RQB_114 IL_58103.6 | |
| IL_6S0X_096 | 1/B/69:77, 1/B/94:102 | Bacterial 5S Loop E Not in a motif group | homologous IL_7A0S_106 IL_56455.3 | |
| IL_6S0X_097 | 1/B/78:80, 1/B/91:93 | No text annotation Not in a motif group | homologous IL_7A0S_107 IL_51629.2 | |
| IL_6S0X_098 | 1/a/31:33, 1/a/560:561 | Single bulged G Not in a motif group | homologous IL_6CZR_113 IL_00225.2 | |
| IL_6S0X_099 | 1/a/45:46, 1/a/404:406 | Single bulged A Not in a motif group | homologous IL_5J7L_002 IL_37497.2 | |
| IL_6S0X_100 | 1/a/48:53, 1/a/367:369 | No text annotation Not in a motif group | geometric IL_5J7L_003 IL_11178.1 | |
| IL_6S0X_101 | 1/a/54:57, 1/a/364:366 | No text annotation Not in a motif group | ||
| IL_6S0X_102 | 1/a/64:67, 1/a/102:103 | Multiple bulged bases Not in a motif group | homologous IL_6CZR_117 IL_76389.1 | |
| IL_6S0X_103 | 1/a/68:71, 1/a/98:101 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4K27_001 IL_30621.2 | |
| IL_6S0X_104 | 1/a/128:131, 1/a/239:240 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_007 IL_16396.2 | |
| IL_6S0X_105 | 1/a/132:136, 1/a/235:238 | Minor groove platform related Not in a motif group | homologous IL_5J7L_010 IL_58764.3 | |
| IL_6S0X_106 | 1/a/147:153, 1/a/168:175 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_5J7L_012 IL_80604.2 | |
| IL_6S0X_107 | 1/a/250:255, 1/a/285:292 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4LFB_011 IL_45067.2 | |
| IL_6S0X_108 | 1/a/257:260, 1/a/282:283 | No text annotation Not in a motif group | homologous IL_4LFB_012 IL_48100.2 | |
| IL_6S0X_109 | 1/a/300:301, 1/a/312:316 | Major groove minor groove platform; mini C-loop Not in a motif group | geometric IL_4PDB_002 IL_09061.6 | |
| IL_6S0X_110 | 1/a/375:377, 1/a/400:401 | Single bulged U Not in a motif group | geometric IL_3D2V_001 IL_83039.13 | |
| IL_6S0X_111 | 1/a/379:383, 1/a/397:398 | C-loop Not in a motif group | homologous IL_5J7L_018 IL_75255.1 | |
| IL_6S0X_112 | 1/a/383:384, 1/a/395:397 | Single bulged G Not in a motif group | geometric IL_5J7L_019 IL_00225.2 | |
| IL_6S0X_113 | 1/a/454:458, 1/a/491:496 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_6CZR_130 IL_88269.3 | |
| IL_6S0X_114 | 1/a/512:519, 1/a/548:549 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5J7L_024 IL_15861.7 | |
| IL_6S0X_115 | 1/a/523:529, 1/a/536:544 | No text annotation Not in a motif group | geometric IL_4V88_415 IL_55871.1 | |
| IL_6S0X_116 | 1/a/577:583, 1/a/889:890 | No text annotation Not in a motif group | homologous IL_5J7L_026 IL_69996.1 | |
| IL_6S0X_117 | 1/a/588:592, 1/a/765:769 | tSH-tHW-tHS Not in a motif group | homologous IL_6CZR_135 IL_17136.1 | |
| IL_6S0X_118 | 1/a/602:604, 1/a/652:653 | Major groove platform Not in a motif group | homologous IL_5J7L_028 IL_27635.1 | |
| IL_6S0X_119 | 1/a/605:607, 1/a/647:651 | No text annotation Not in a motif group | ||
| IL_6S0X_120 | 1/a/612:620, 1/a/636:642 | No text annotation Not in a motif group | ||
| IL_6S0X_121 | 1/a/662:663, 1/a/759:762 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4LFB_027 IL_50694.2 | |
| IL_6S0X_122 | 1/a/665:666, 1/a/755:757 | Major groove platform Not in a motif group | homologous IL_4LFB_028 IL_27635.1 | |
| IL_6S0X_123 | 1/a/670:675, 1/a/747:751 | No text annotation Not in a motif group | ||
| IL_6S0X_124 | 1/a/681:686, 1/a/720:725 | No text annotation Not in a motif group | homologous IL_4LFB_030 IL_04668.1 | |
| IL_6S0X_125 | 1/a/690:696, 1/a/707:716 | No text annotation Not in a motif group | ||
| IL_6S0X_126 | 1/a/781:787, 1/a/811:814 | No text annotation Not in a motif group | ||
| IL_6S0X_127 | 1/a/787:791, 1/a/807:811 | tSH-tHW-tHS Not in a motif group | homologous IL_6CZR_145 IL_17136.1 | |
| IL_6S0X_128 | 1/a/896:903, 1/a/914:919 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_5J7L_038 IL_24606.2 | |
| IL_6S0X_129 | 1/a/931:933, 1/a/1402:1405 | No text annotation Not in a motif group | geometric IL_4PCJ_001 IL_95997.1 | |
| IL_6S0X_130 | 1/a/934:936, 1/a/1400:1401 | Single bulged G Not in a motif group | homologous IL_6CZR_148 IL_00225.2 | |
| IL_6S0X_131 | 1/a/962:963, 1/a/1236:1238 | No text annotation Not in a motif group | homologous IL_6CZR_150 NA | |
| IL_6S0X_132 | 1/a/1002:1007, 1/a/1054:1056 | No text annotation Not in a motif group | ||
| IL_6S0X_133 | 1/a/1007:1008, 1/a/1052:1054 | Single stack bend Not in a motif group | geometric IL_5J7L_269 IL_76488.2 | |
| IL_6S0X_134 | 1/a/1010:1012, 1/a/1048:1050 | Major groove platform Not in a motif group | geometric IL_4V9F_044 IL_27635.1 | |
| IL_6S0X_135 | 1/a/1059:1061, 1/a/1218:1219 | No text annotation Not in a motif group | homologous IL_6CZR_152 NA | |
| IL_6S0X_136 | 1/a/1062:1067, 1/a/1214:1217 | No text annotation Not in a motif group | ||
| IL_6S0X_137 | 1/a/1068:1069, 1/a/1209:1213 | Minor groove platform Not in a motif group | homologous IL_5J7L_048 IL_93353.1 | |
| IL_6S0X_138 | 1/a/1071:1072, 1/a/1205:1207 | Single bulged A Not in a motif group | homologous IL_5J7L_049 IL_37497.2 | |
| IL_6S0X_139 | 1/a/1072:1074, 1/a/1203:1205 | No text annotation Not in a motif group | geometric IL_3BNR_012 IL_95997.1 | |
| IL_6S0X_140 | 1/a/1133:1143, 1/a/1152:1162 | No text annotation Not in a motif group | ||
| IL_6S0X_141 | 1/a/1256:1263, 1/a/1294:1301 | No text annotation Not in a motif group | ||
| IL_6S0X_142 | 1/a/1264:1268, 1/a/1287:1293 | No text annotation Not in a motif group | ||
| IL_6S0X_143 | 1/a/1269:1275, 1/a/1280:1286 | No text annotation Not in a motif group | ||
| IL_6S0X_144 | 1/a/1313:1318, 1/a/1339:1344 | No text annotation Not in a motif group | geometric IL_5TBW_026 IL_19954.2 | |
| IL_6S0X_145 | 1/a/1409:1411, 1/a/1512:1515 | No text annotation Not in a motif group | homologous IL_6CZR_165 NA | |
| IL_6S0X_146 | 1/a/1411:1414, 1/a/1508:1512 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_99670.1 | |
| IL_6S0X_147 | 1/a/1415:1417, 1/a/1505:1507 | No text annotation Not in a motif group | geometric IL_4P3T_006 IL_95997.1 | |
| IL_6S0X_148 | 1/a/1417:1419, 1/a/1502:1505 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_4RUM_001 IL_82068.2 | |
| IL_6S0X_149 | 1/a/1422:1424, 1/a/1497:1499 | No text annotation Not in a motif group | homologous IL_5J7L_061 IL_95997.1 | |
| IL_6S0X_150 | 1/a/1426:1429, 1/a/1492:1495 | Double sheared Not in a motif group | homologous IL_5J7L_062 IL_09705.9 | |
| IL_6S0X_151 | 1/a/1434:1437, 1/a/1484:1487 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5LQO_002 IL_30621.2 | |
| IL_6S0X_152 | 1/a/1440:1445, 1/a/1477:1481 | Triple sheared related Not in a motif group | geometric IL_4V9F_018 IL_64879.2 | |
| IL_6S0X_153 | 1/a/1445:1447, 1/a/1475:1477 | No text annotation Not in a motif group | homologous IL_4LFB_063 IL_95997.1 | |
| IL_6S0X_154 | 1/a/1449:1453, 1/a/1470:1473 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6S0X_068 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6S0X_001 | 1/A/32:35, 1/A/491:507, 1/A/514:519 | No text annotation Not in a motif group | ||
| J3_6S0X_002 | 1/A/56:57, 1/A/70:76, 1/A/109:113 | No text annotation Not in a motif group | homologous J3_5J7L_037 NA | |
| J3_6S0X_003 | 1/A/340:344, 1/A/359:369, 1/A/379:384 | No text annotation Not in a motif group | ||
| J3_6S0X_004 | 1/A/728:734, 1/A/818:820, 1/A/836:839 | No text annotation Not in a motif group | ||
| J3_6S0X_005 | 1/A/743:745, 1/A/777:781, 1/A/805:808 | No text annotation Not in a motif group | homologous J3_4WF9_003 NA | |
| J3_6S0X_006 | 1/A/1335:1340, 1/A/1669:1671, 1/A/1683:1686 | No text annotation Not in a motif group | homologous J3_7RQB_007 NA | |
| J3_6S0X_007 | 1/A/1342:1346, 1/A/1649:1655, 1/A/1664:1667 | No text annotation Not in a motif group | homologous J3_4WF9_005 NA | |
| J3_6S0X_008 | 1/A/2118:2120, 1/A/2223:2229, 1/A/2248:2255 | No text annotation Not in a motif group | ||
| J3_6S0X_009 | 1/A/2309:2312, 1/A/2410:2422, 1/A/2448:2454 | No text annotation Not in a motif group | ||
| J3_6S0X_010 | 1/A/2322:2324, 1/A/2348:2350, 1/A/2359:2364 | No text annotation Not in a motif group | ||
| J3_6S0X_011 | 1/A/2544:2547, 1/A/2572:2574, 1/A/2588:2594 | No text annotation Not in a motif group | ||
| J3_6S0X_012 | 1/A/2834:2835, 1/A/2851:2857, 1/A/2901:2906 | No text annotation Not in a motif group | ||
| J3_6S0X_013 | 1/B/9:14, 1/B/66:68, 1/B/103:106 | No text annotation Not in a motif group | ||
| J3_6S0X_014 | 1/a/47:48, 1/a/369:375, 1/a/401:403 | No text annotation Not in a motif group | homologous J3_5J7L_001 NA | |
| J3_6S0X_015 | 1/a/594:596, 1/a/659:662, 1/a/762:763 | No text annotation Not in a motif group | ||
| J3_6S0X_016 | 1/a/680:681, 1/a/725:733, 1/a/740:742 | No text annotation Not in a motif group | ||
| J3_6S0X_017 | 1/a/834:837, 1/a/866:870, 1/a/877:883 | No text annotation Not in a motif group | homologous J3_4LFB_001 NA | |
| J3_6S0X_018 | 1/a/952:955, 1/a/1245:1247, 1/a/1347:1350 | No text annotation Not in a motif group | homologous J3_5J7L_005 NA | |
| J3_6S0X_019 | 1/a/964:971, 1/a/982:993, 1/a/1231:1235 | No text annotation Not in a motif group | ||
| J3_6S0X_020 | 1/a/998:1002, 1/a/1056:1059, 1/a/1219:1226 | No text annotation Not in a motif group | ||
| J3_6S0X_021 | 1/a/1074:1079, 1/a/1118:1125, 1/a/1196:1203 | No text annotation Not in a motif group | ||
| J3_6S0X_022 | 1/a/1084:1086, 1/a/1093:1098, 1/a/1109:1113 | No text annotation Not in a motif group | ||
| J3_6S0X_023 | 1/a/1247:1251, 1/a/1306:1313, 1/a/1344:1347 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
Coloring options: