6S0X Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
HL_6S0X_099 | 1/A/57:70 | No text annotation | ||
HL_6S0X_001 | 1/A/59:68 | Pseudoknot with intercalation | homologous HL_7A0S_001 HL_93438.2 | |
HL_6S0X_002 | 1/A/81:104 | No text annotation | ||
HL_6S0X_003 | 1/A/122:127 | No text annotation | homologous HL_4WF9_003 HL_75660.5 | |
HL_6S0X_004 | 1/A/136:143 | GNRA wlth tandem sheared | homologous HL_4WF9_004 HL_81538.2 | |
HL_6S0X_005 | 1/A/157:171 | No text annotation | ||
HL_6S0X_006 | 1/A/197:204 | No text annotation | homologous HL_4WF9_006 HL_30068.2 | |
HL_6S0X_106 | 1/A/228:233 | No text annotation | homologous HL_4WF9_007 HL_53890.2 | |
HL_6S0X_008 | 1/A/249:255 | No text annotation | homologous HL_5J7L_141 HL_37369.2 | |
HL_6S0X_009 | 1/A/283:288 | No text annotation | geometric HL_5FMZ_001 HL_49922.4 | |
HL_6S0X_010 | 1/A/348:355 | No text annotation | geometric HL_8H9D_001 NA | |
HL_6S0X_011 | 1/A/370:378 | No text annotation | ||
HL_6S0X_107 | 1/A/422:444 | No text annotation | ||
HL_6S0X_013 | 1/A/456:463 | No text annotation | homologous HL_7RQB_014 NA | |
HL_6S0X_014 | 1/A/508:513 | GNRA | homologous HL_7RQB_015 NA | |
HL_6S0X_015 | 1/A/533:538 | GNRA | homologous HL_4WF9_016 HL_37824.7 | |
HL_6S0X_016 | 1/A/587:594 | No text annotation | geometric HL_5HR6_002 HL_50006.2 | |
HL_6S0X_017 | 1/A/609:618 | T-loop with 2 stacked bulged bases | homologous HL_4WF9_018 HL_28252.8 | |
HL_6S0X_018 | 1/A/655:661 | No text annotation | geometric HL_5U3G_001 HL_75660.5 | |
HL_6S0X_019 | 1/A/674:679 | GNRA | homologous HL_7RQB_020 NA | |
HL_6S0X_020 | 1/A/686:692 | GNRA | homologous HL_4WF9_021 HL_37824.7 | |
HL_6S0X_100 | 1/A/756:765 | No text annotation | ||
HL_6S0X_022 | 1/A/789:798 | No text annotation | homologous HL_7A0S_022 HL_88205.2 | |
HL_6S0X_101 | 1/A/824:830 | No text annotation | homologous HL_4WF9_024 HL_87954.2 | |
HL_6S0X_024 | 1/A/871:876 | Mini UNCG | geometric HL_4WF9_037 HL_48778.2 | |
HL_6S0X_025 | 1/A/925:942 | No text annotation | geometric HL_3IGI_004 HL_04783.2 | |
HL_6S0X_108 | 1/A/999:1006 | No text annotation | ||
HL_6S0X_027 | 1/A/1022:1029 | No text annotation | ||
HL_6S0X_028 | 1/A/1108:1118 | No text annotation | ||
HL_6S0X_029 | 1/A/1213:1218 | No text annotation | ||
HL_6S0X_030 | 1/A/1260:1265 | No text annotation | geometric HL_3HHN_007 HL_80709.3 | |
HL_6S0X_031 | 1/A/1318:1326 | T-loop with 2 stacked bulged bases | homologous HL_7A0S_032 HL_28252.8 | |
HL_6S0X_032 | 1/A/1360:1368 | No text annotation | geometric HL_7A0S_041 NA | |
HL_6S0X_033 | 1/A/1400:1405 | GNRA | homologous HL_5J7L_167 HL_37824.7 | |
HL_6S0X_034 | 1/A/1426:1435 | No text annotation | homologous HL_4WF9_035 HL_81545.2 | |
HL_6S0X_035 | 1/A/1535:1541 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_170 HL_57176.2 | |
HL_6S0X_036 | 1/A/1612:1615 | No text annotation | homologous HL_7RQB_039 NA | |
HL_6S0X_037 | 1/A/1656:1663 | No text annotation | homologous HL_7RQB_040 NA | |
HL_6S0X_038 | 1/A/1673:1681 | GNRA with extra cWW | homologous HL_4WF9_039 HL_20167.2 | |
HL_6S0X_039 | 1/A/1735:1740 | UNCG | geometric HL_4V9F_044 HL_34617.5 | |
HL_6S0X_040 | 1/A/1760:1769 | No text annotation | homologous HL_7A0S_043 NA | |
HL_6S0X_041 | 1/A/1779:1783 | No text annotation | homologous HL_7RQB_044 NA | |
HL_6S0X_042 | 1/A/1803:1815 | No text annotation | homologous HL_7A0S_045 HL_60266.1 | |
HL_6S0X_043 | 1/A/1833:1838 | GNRA | homologous HL_7RQB_046 NA | |
HL_6S0X_044 | 1/A/1891:1905 | No text annotation | homologous HL_4WF9_045 NA | |
HL_6S0X_045 | 1/A/1937:1947 | No text annotation | ||
HL_6S0X_046 | 1/A/1976:1984 | No text annotation | homologous HL_5J7L_182 HL_20167.2 | |
HL_6S0X_047 | 1/A/2054:2063 | No text annotation | ||
HL_6S0X_102 | 1/A/2156:2186 | No text annotation | ||
HL_6S0X_048 | 1/A/2168:2177 | No text annotation | ||
HL_6S0X_049 | 1/A/2236:2242 | No text annotation | homologous HL_5J7L_185 HL_49922.4 | |
HL_6S0X_050 | 1/A/2291:2303 | No text annotation | homologous HL_4WF9_050 HL_91939.2 | |
HL_6S0X_052 | 1/A/2351:2358 | Pseudoknot geometry | homologous HL_4WF9_052 HL_93324.4 | |
HL_6S0X_053 | 1/A/2382:2389 | GNRA with extra cWW | homologous HL_4WF9_053 HL_04259.3 | |
HL_6S0X_054 | 1/A/2401:2406 | GNRA | homologous HL_7A0S_057 HL_37824.7 | |
HL_6S0X_055 | 1/A/2431:2440 | No text annotation | homologous HL_7A0S_058 HL_53454.2 | |
HL_6S0X_056 | 1/A/2498:2506 | No text annotation | homologous HL_7RQB_060 NA | |
HL_6S0X_057 | 1/A/2555:2562 | No text annotation | homologous HL_5J7L_194 HL_31585.4 | |
HL_6S0X_109 | 1/A/2578:2584 | No text annotation | ||
HL_6S0X_059 | 1/A/2621:2626 | GNRA | homologous HL_5J7L_196 HL_37824.7 | |
HL_6S0X_060 | 1/A/2685:2690 | GNRA | geometric HL_3P22_001 HL_37824.7 | |
HL_6S0X_061 | 1/A/2728:2733 | Ribsomal LSU H95 | homologous HL_4WF9_061 HL_65794.5 | |
HL_6S0X_062 | 1/A/2772:2786 | No text annotation | homologous HL_5J7L_199 HL_74055.2 | |
HL_6S0X_063 | 1/A/2839:2847 | No text annotation | homologous HL_4WF9_064 HL_64690.6 | |
HL_6S0X_064 | 1/A/2876:2881 | GNRA | homologous HL_5J7L_202 HL_37824.7 | |
HL_6S0X_103 | 1/B/32:46 | No text annotation | homologous HL_9DFE_067 HL_97756.2 | |
HL_6S0X_065 | 1/B/36:42 | No text annotation | geometric HL_5J7L_203 HL_47787.2 | |
HL_6S0X_066 | 1/B/83:88 | Mini UNCG | homologous HL_5J7L_204 HL_48778.2 | |
HL_6S0X_067 | 1/a/13:23 | No text annotation | homologous HL_4LFB_001 HL_89881.5 | |
HL_6S0X_104 | 1/a/73:96 | No text annotation | ||
HL_6S0X_069 | 1/a/158:163 | GNRA | homologous HL_4LFB_003 HL_37824.7 | |
HL_6S0X_070 | 1/a/187:203 | No text annotation | ||
HL_6S0X_071 | 1/a/213:226 | No text annotation | homologous HL_6CZR_076 NA | |
HL_6S0X_072 | 1/a/267:275 | GNRA related | homologous HL_4LFB_006 HL_84299.4 | |
HL_6S0X_073 | 1/a/304:309 | GNRA | homologous HL_5J7L_007 HL_37824.7 | |
HL_6S0X_074 | 1/a/328:341 | No text annotation | homologous HL_5J7L_008 HL_81205.3 | |
HL_6S0X_075 | 1/a/350:355 | UNCG | homologous HL_6CZR_080 NA | |
HL_6S0X_076 | 1/a/386:393 | No text annotation | geometric HL_9DE7_001 HL_77082.1 | |
HL_6S0X_105 | 1/a/416:442 | No text annotation | ||
HL_6S0X_077 | 1/a/427:432 | No text annotation | ||
HL_6S0X_110 | 1/a/470:479 | No text annotation | ||
HL_6S0X_079 | 1/a/530:535 | Mini UNCG | geometric HL_4YAZ_004 HL_48778.2 | |
HL_6S0X_080 | 1/a/625:631 | No text annotation | homologous HL_5J7L_014 HL_10453.3 | |
HL_6S0X_081 | 1/a/697:706 | No text annotation | homologous HL_5J7L_015 HL_75293.5 | |
HL_6S0X_082 | 1/a/734:739 | GNRA | homologous HL_4LFB_016 HL_37824.7 | |
HL_6S0X_083 | 1/a/794:804 | No text annotation | ||
HL_6S0X_111 | 1/a/849:854 | No text annotation | ||
HL_6S0X_085 | 1/a/871:876 | GNRA | homologous HL_5J7L_019 HL_37824.7 | |
HL_6S0X_086 | 1/a/906:911 | GNRA | homologous HL_4LFB_020 HL_37824.7 | |
HL_6S0X_087 | 1/a/972:981 | No text annotation | homologous HL_5J7L_021 HL_50779.4 | |
HL_6S0X_088 | 1/a/1021:1026 | No text annotation | geometric HL_5U3G_001 HL_75660.5 | |
HL_6S0X_089 | 1/a/1038:1043 | No text annotation | ||
HL_6S0X_090 | 1/a/1087:1092 | GNRA | homologous HL_4LFB_024 HL_37824.7 | |
HL_6S0X_091 | 1/a/1100:1107 | T-loop related | homologous HL_6CZR_096 NA | |
HL_6S0X_092 | 1/a/1144:1151 | Externally structured | geometric HL_8C3A_022 NA | |
HL_6S0X_093 | 1/a/1174:1182 | No text annotation | ||
HL_6S0X_094 | 1/a/1275:1280 | GNRA | homologous HL_5J7L_027 HL_37824.7 | |
HL_6S0X_095 | 1/a/1324:1333 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_02887.3 | |
HL_6S0X_096 | 1/a/1366:1376 | No text annotation | homologous HL_4LFB_030 HL_06226.4 | |
HL_6S0X_097 | 1/a/1455:1468 | Pseudoknot geometry | geometric HL_4GXY_003 HL_65794.5 | |
HL_6S0X_098 | 1/a/1526:1531 | GNRA | geometric HL_5TPY_006 HL_37824.7 |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
HL_6S0X_007 | No text annotation | ||
HL_6S0X_012 | No text annotation | ||
HL_6S0X_021 | No text annotation | ||
HL_6S0X_023 | No text annotation | ||
HL_6S0X_026 | tRNA D-loop | ||
HL_6S0X_051 | No text annotation | ||
HL_6S0X_058 | No text annotation | ||
HL_6S0X_068 | No text annotation | ||
HL_6S0X_078 | No text annotation | ||
HL_6S0X_084 | No text annotation |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
IL_6S0X_001 | 1/A/24:30, 1/A/555:561 | Triple sheared with non-canonical cWW | homologous IL_5J7L_245 IL_04021.2 | |
IL_6S0X_002 | 1/A/36:37, 1/A/488:490 | No text annotation | ||
IL_6S0X_003 | 1/A/152:153, 1/A/175:177 | Multiple bulged bases | geometric IL_1R3E_001 IL_84476.1 | |
IL_6S0X_004 | 1/A/186:187, 1/A/215:217 | Single stack bend | homologous IL_4WF9_007 IL_90729.1 | |
IL_6S0X_005 | 1/A/190:197, 1/A/204:212 | 9x8 Sarcin-Ricin; G-bulge | homologous IL_4WF9_008 IL_84694.2 | |
IL_6S0X_006 | 1/A/241:248, 1/A/256:262 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7A0S_007 IL_04346.10 | |
IL_6S0X_007 | 1/A/302:303, 1/A/413:415 | Single stack bend | geometric IL_5J7L_269 IL_26793.1 | |
IL_6S0X_008 | 1/A/303:307, 1/A/408:413 | No text annotation | ||
IL_6S0X_155 | 1/A/308:338, 1/A/386:407 | No text annotation | ||
IL_6S0X_009 | 1/A/580:584, 1/A/597:601 | No text annotation | ||
IL_6S0X_183 | 1/A/631:633, 1/A/712:713 | No text annotation | geometric IL_1HYS_003 IL_10569.1 | |
IL_6S0X_156 | 1/A/638:640, 1/A/705:707 | No text annotation | ||
IL_6S0X_013 | 1/A/647:653, 1/A/663:669 | No text annotation | ||
IL_6S0X_014 | 1/A/717:719, 1/A/851:853 | No text annotation | geometric IL_7RQB_017 NA | |
IL_6S0X_015 | 1/A/719:723, 1/A/844:851 | tHW-tHW cross-strand stack | homologous IL_7A0S_015 IL_54041.2 | |
IL_6S0X_016 | 1/A/742:743, 1/A/808:810 | Single bulged A | geometric IL_4WF9_022 IL_31462.6 | |
IL_6S0X_017 | 1/A/747:748, 1/A/773:775 | Single bulged G | geometric IL_4V9F_026 IL_00225.13 | |
IL_6S0X_018 | 1/A/748:752, 1/A/769:773 | Triple sheared | homologous IL_4WF9_024 IL_50730.2 | |
IL_6S0X_019 | 1/A/783:785, 1/A/802:803 | Major groove platform | homologous IL_4WF9_026 IL_48076.6 | |
IL_6S0X_020 | 1/A/820:822, 1/A/832:836 | Multiple bulged bases | homologous IL_5J7L_265 IL_06549.2 | |
IL_6S0X_021 | 1/A/881:883, 1/A/984:987 | No text annotation | ||
IL_6S0X_184 | 1/A/889:893, 1/A/975:978 | No text annotation | homologous IL_4WF9_029 IL_06300.1 | |
IL_6S0X_157 | 1/A/897:914, 1/A/953:971 | No text annotation | ||
IL_6S0X_023 | 1/A/907:914, 1/A/953:960 | No text annotation | ||
IL_6S0X_024 | 1/A/920:924, 1/A/943:947 | Triple sheared | homologous IL_5J7L_274 IL_17948.2 | |
IL_6S0X_185 | 1/A/1038:1040, 1/A/1203:1204 | No text annotation | ||
IL_6S0X_026 | 1/A/1042:1046, 1/A/1197:1201 | UAA/GAN | homologous IL_7RQB_036 NA | |
IL_6S0X_027 | 1/A/1048:1057, 1/A/1193:1195 | No text annotation | ||
IL_6S0X_160 | 1/A/1062:1068, 1/A/1184:1188 | Kink-turn related | homologous IL_4WF9_039 IL_57188.5 | |
IL_6S0X_029 | 1/A/1068:1075, 1/A/1167:1184 | No text annotation | ||
IL_6S0X_030 | 1/A/1075:1078, 1/A/1165:1167 | No text annotation | ||
IL_6S0X_161 | 1/A/1075:1083, 1/A/1160:1167 | No text annotation | ||
IL_6S0X_031 | 1/A/1079:1083, 1/A/1160:1164 | No text annotation | ||
IL_6S0X_186 | 1/A/1087:1107, 1/A/1119:1156 | No text annotation | ||
IL_6S0X_032 | 1/A/1212:1213, 1/A/1218:1220 | No text annotation | ||
IL_6S0X_033 | 1/A/1243:1245, 1/A/1277:1279 | Isolated cWH basepair | homologous IL_4WF9_045 IL_10167.6 | |
IL_6S0X_034 | 1/A/1246:1254, 1/A/1271:1276 | No text annotation | ||
IL_6S0X_035 | 1/A/1257:1260, 1/A/1265:1268 | No text annotation | ||
IL_6S0X_036 | 1/A/1300:1307, 1/A/2038:2044 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_4WF9_048 IL_04346.10 | |
IL_6S0X_037 | 1/A/1356:1360, 1/A/1368:1370 | C-loop | homologous IL_5J7L_291 IL_63596.11 | |
IL_6S0X_038 | 1/A/1388:1392, 1/A/1413:1417 | UAA/GAN | homologous IL_5J7L_292 IL_89021.2 | |
IL_6S0X_039 | 1/A/1394:1398, 1/A/1407:1411 | tSH-tHW-tHS | homologous IL_5J7L_293 IL_17136.7 | |
IL_6S0X_187 | 1/A/1448:1451, 1/A/1634:1635 | No text annotation | ||
IL_6S0X_041 | 1/A/1451:1465, 1/A/1624:1634 | No text annotation | ||
IL_6S0X_163 | 1/A/1477:1479, 1/A/1604:1607 | No text annotation | homologous IL_7A0S_052 IL_14688.1 | |
IL_6S0X_164 | 1/A/1481:1510, 1/A/1571:1602 | No text annotation | ||
IL_6S0X_165 | 1/A/1511:1515, 1/A/1565:1570 | No text annotation | homologous IL_4WF9_116 IL_25186.4 | |
IL_6S0X_166 | 1/A/1518:1522, 1/A/1558:1562 | Triple sheared | homologous IL_7A0S_056 IL_17948.2 | |
IL_6S0X_045 | 1/A/1524:1526, 1/A/1549:1556 | No text annotation | ||
IL_6S0X_046 | 1/A/1532:1534, 1/A/1542:1543 | No text annotation | ||
IL_6S0X_047 | 1/A/1695:1701, 1/A/2029:2033 | No text annotation | ||
IL_6S0X_048 | 1/A/1701:1706, 1/A/2024:2029 | No text annotation | geometric IL_6O5F_001 NA | |
IL_6S0X_049 | 1/A/1706:1709, 1/A/2022:2024 | No text annotation | ||
IL_6S0X_050 | 1/A/1710:1713, 1/A/2020:2021 | Major groove platform; stack outside cWW | geometric IL_5J7L_306 IL_50694.7 | |
IL_6S0X_168 | 1/A/1710:1718, 1/A/2017:2021 | No text annotation | homologous IL_4WF9_117 IL_22854.4 | |
IL_6S0X_051 | 1/A/1713:1718, 1/A/2017:2020 | Intercalated tWH | homologous IL_4WF9_065 IL_76758.2 | |
IL_6S0X_052 | 1/A/1730:1735, 1/A/1740:1746 | tSH-tSH-tHH-tHS | homologous IL_7A0S_063 IL_47346.2 | |
IL_6S0X_053 | 1/A/1755:1759, 1/A/1770:1774 | No text annotation | ||
IL_6S0X_054 | 1/A/1797:1798, 1/A/2007:2009 | Single bulged A | homologous IL_5J7L_312 IL_31462.6 | |
IL_6S0X_055 | 1/A/1825:1831, 1/A/1840:1848 | Kink-turn related | homologous IL_7RQB_070 NA | |
IL_6S0X_056 | 1/A/1864:1867, 1/A/1929:1930 | Minor groove platform, major groove intercalation | homologous IL_5J7L_314 IL_95583.2 | |
IL_6S0X_057 | 1/A/1868:1869, 1/A/1925:1928 | Major groove intercalation | homologous IL_5J7L_315 IL_82107.4 | |
IL_6S0X_058 | 1/A/1873:1876, 1/A/1919:1921 | No text annotation | geometric IL_4V9F_072 IL_55516.2 | |
IL_6S0X_169 | 1/A/1873:1882, 1/A/1914:1921 | No text annotation | ||
IL_6S0X_059 | 1/A/1876:1882, 1/A/1914:1919 | No text annotation | ||
IL_6S0X_060 | 1/A/1883:1887, 1/A/1909:1913 | Triple sheared | homologous IL_7RQB_075 NA | |
IL_6S0X_061 | 1/A/1961:1972, 1/A/1988:1991 | No text annotation | homologous IL_4WF9_077 IL_42218.2 | |
IL_6S0X_062 | 1/A/2077:2079, 1/A/2644:2645 | Major groove platform | homologous IL_7A0S_073 IL_48076.6 | |
IL_6S0X_063 | 1/A/2080:2083, 1/A/2638:2643 | No text annotation | ||
IL_6S0X_064 | 1/A/2094:2096, 1/A/2469:2470 | Single bulged U | homologous IL_7A0S_075 IL_89505.4 | |
IL_6S0X_065 | 1/A/2097:2098, 1/A/2465:2468 | Minor groove platform | homologous IL_7RQB_081 NA | |
IL_6S0X_066 | 1/A/2108:2110, 1/A/2263:2266 | Isolated tHS basepair with bulges | homologous IL_4WF9_082 IL_85599.2 | |
IL_6S0X_067 | 1/A/2123:2125, 1/A/2218:2220 | Isolated non-canonical cWW pair | geometric IL_2O3V_004 IL_28037.2 | |
IL_6S0X_170 | 1/A/2133:2150, 1/A/2202:2210 | No text annotation | ||
IL_6S0X_069 | 1/A/2151:2154, 1/A/2188:2201 | No text annotation | ||
IL_6S0X_070 | 1/A/2156:2168, 1/A/2177:2186 | No text annotation | ||
IL_6S0X_071 | 1/A/2229:2231, 1/A/2247:2248 | Single bulged G | geometric IL_3NDB_004 IL_00225.13 | |
IL_6S0X_072 | 1/A/2324:2326, 1/A/2344:2348 | No text annotation | ||
IL_6S0X_188 | 1/A/2377:2380, 1/A/2391:2394 | Double sheared | homologous IL_4WF9_087 IL_09705.15 | |
IL_6S0X_171 | 1/A/2428:2430, 1/A/2441:2442 | No text annotation | ||
IL_6S0X_075 | 1/A/2484:2486, 1/A/2520:2521 | Major groove platform | homologous IL_5J7L_393 IL_07039.3 | |
IL_6S0X_172 | 1/A/2486:2488, 1/A/2516:2520 | No text annotation | ||
IL_6S0X_077 | 1/A/2493:2497, 1/A/2507:2511 | Triple sheared | homologous IL_7A0S_087 IL_17948.2 | |
IL_6S0X_078 | 1/A/2534:2535, 1/A/2607:2609 | Major groove platform | homologous IL_7A0S_088 IL_07039.3 | |
IL_6S0X_079 | 1/A/2537:2539, 1/A/2601:2605 | Isolated non-canonical cWW with bulges | geometric IL_4WF9_095 IL_07785.1 | |
IL_6S0X_080 | 1/A/2539:2540, 1/A/2598:2601 | Multiple bulged bases | homologous IL_7RQB_098 NA | |
IL_6S0X_081 | 1/A/2549:2550, 1/A/2567:2570 | No text annotation | ||
IL_6S0X_082 | 1/A/2618:2619, 1/A/2628:2630 | No text annotation | homologous IL_8VTW_100 NA | |
IL_6S0X_083 | 1/A/2663:2667, 1/A/2801:2809 | tSH-tHS-tHW | homologous IL_7RQB_102 NA | |
IL_6S0X_084 | 1/A/2679:2685, 1/A/2690:2695 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_7RQB_103 NA | |
IL_6S0X_085 | 1/A/2707:2711, 1/A/2752:2754 | C-loop | homologous IL_4WF9_101 IL_63596.11 | |
IL_6S0X_086 | 1/A/2714:2718, 1/A/2745:2749 | No text annotation | homologous IL_4WF9_102 IL_23774.1 | |
IL_6S0X_087 | 1/A/2722:2723, 1/A/2738:2741 | Multiple bulged bases | homologous IL_5J7L_349 IL_42626.2 | |
IL_6S0X_088 | 1/A/2764:2769, 1/A/2789:2794 | UAA/GAN with extra cWW | homologous IL_7A0S_098 IL_49767.8 | |
IL_6S0X_089 | 1/A/2816:2831, 1/A/2909:2913 | No text annotation | ||
IL_6S0X_189 | 1/A/2858:2859, 1/A/2898:2900 | Major groove intercalation | homologous IL_7A0S_099 IL_00225.13 | |
IL_6S0X_190 | 1/A/2862:2865, 1/A/2891:2895 | No text annotation | ||
IL_6S0X_174 | 1/A/2867:2872, 1/A/2885:2889 | No text annotation | ||
IL_6S0X_093 | 1/B/15:16, 1/B/63:65 | Major groove intercalation | homologous IL_4WF9_112 IL_31462.6 | |
IL_6S0X_094 | 1/B/21:29, 1/B/49:58 | No text annotation | ||
IL_6S0X_095 | 1/B/32:36, 1/B/42:46 | Symmetric double minor groove platform | homologous IL_7RQB_114 NA | |
IL_6S0X_096 | 1/B/69:77, 1/B/94:102 | Bacterial 5S Loop E | homologous IL_7A0S_106 IL_56455.6 | |
IL_6S0X_097 | 1/B/78:80, 1/B/91:93 | Isolated non-canonical cWW pair | homologous IL_7A0S_107 IL_07785.1 | |
IL_6S0X_098 | 1/a/31:33, 1/a/560:561 | Single bulged G | homologous IL_6CZR_113 NA | |
IL_6S0X_099 | 1/a/45:46, 1/a/404:406 | Single bulged A | homologous IL_5J7L_002 IL_31462.6 | |
IL_6S0X_100 | 1/a/48:53, 1/a/367:369 | No text annotation | geometric IL_5J7L_003 IL_14177.2 | |
IL_6S0X_101 | 1/a/54:57, 1/a/364:366 | No text annotation | ||
IL_6S0X_102 | 1/a/64:67, 1/a/102:103 | Multiple bulged bases | homologous IL_6CZR_117 NA | |
IL_6S0X_103 | 1/a/68:71, 1/a/98:101 | Tandem non-canonical cWW pairs | geometric IL_4K27_001 IL_85033.2 | |
IL_6S0X_104 | 1/a/128:131, 1/a/239:240 | Minor groove platform | homologous IL_4LFB_007 IL_33761.2 | |
IL_6S0X_105 | 1/a/132:136, 1/a/235:238 | Minor groove platform related | homologous IL_5J7L_010 IL_64231.5 | |
IL_6S0X_106 | 1/a/147:153, 1/a/168:175 | tWH-tWH-tHW-tHW | homologous IL_5J7L_012 IL_80604.6 | |
IL_6S0X_107 | 1/a/250:255, 1/a/285:292 | Kink-turn with non-sequential stacking | homologous IL_4LFB_011 IL_46174.3 | |
IL_6S0X_108 | 1/a/257:260, 1/a/282:283 | No text annotation | homologous IL_4LFB_012 IL_47074.2 | |
IL_6S0X_109 | 1/a/300:301, 1/a/312:316 | Major groove minor groove platform; mini C-loop | geometric IL_4PDB_002 IL_68140.4 | |
IL_6S0X_110 | 1/a/375:377, 1/a/400:401 | Single bulged U | geometric IL_3D2V_001 IL_89505.4 | |
IL_6S0X_111 | 1/a/379:383, 1/a/397:398 | C-loop | homologous IL_5J7L_018 IL_03109.3 | |
IL_6S0X_112 | 1/a/383:384, 1/a/395:397 | Single bulged G | geometric IL_5J7L_019 IL_00225.13 | |
IL_6S0X_113 | 1/a/454:458, 1/a/491:496 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_6CZR_130 NA | |
IL_6S0X_176 | 1/a/458:466, 1/a/483:491 | No text annotation | homologous IL_6CZR_360 NA | |
IL_6S0X_114 | 1/a/512:519, 1/a/548:549 | SSU/LSU pseudoknot | homologous IL_5J7L_024 IL_41203.4 | |
IL_6S0X_115 | 1/a/523:529, 1/a/536:544 | Kink-turn related | geometric IL_4V88_415 NA | |
IL_6S0X_116 | 1/a/577:583, 1/a/889:890 | No text annotation | homologous IL_5J7L_026 IL_38186.6 | |
IL_6S0X_117 | 1/a/588:592, 1/a/765:769 | tSH-tHW-tHS | homologous IL_6CZR_135 NA | |
IL_6S0X_118 | 1/a/602:604, 1/a/652:653 | Major groove platform | homologous IL_5J7L_028 IL_48076.6 | |
IL_6S0X_119 | 1/a/605:607, 1/a/647:651 | No text annotation | homologous IL_6CZR_361 NA | |
IL_6S0X_120 | 1/a/612:620, 1/a/636:642 | No text annotation | ||
IL_6S0X_121 | 1/a/662:663, 1/a/759:762 | Major groove platform; stack outside cWW | homologous IL_4LFB_027 IL_50694.7 | |
IL_6S0X_122 | 1/a/665:666, 1/a/755:757 | Major groove platform | homologous IL_4LFB_028 IL_48076.6 | |
IL_6S0X_191 | 1/a/670:674, 1/a/748:751 | Tandem non-canonical cWW pairs | homologous IL_5J7L_033 IL_85033.2 | |
IL_6S0X_177 | 1/a/681:685, 1/a/721:725 | Triple non-canonical cWW pairs | homologous IL_4LFB_065 IL_49751.4 | |
IL_6S0X_125 | 1/a/690:696, 1/a/707:716 | No text annotation | geometric IL_8CRE_436 IL_89047.1 | |
IL_6S0X_192 | 1/a/782:787, 1/a/811:813 | No text annotation | ||
IL_6S0X_127 | 1/a/787:791, 1/a/807:811 | tSH-tHW-tHS | homologous IL_6CZR_145 NA | |
IL_6S0X_128 | 1/a/896:903, 1/a/914:919 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_5J7L_038 IL_41756.4 | |
IL_6S0X_129 | 1/a/931:933, 1/a/1402:1405 | Isolated non-canonical cWW pair | geometric IL_4PCJ_001 IL_28037.2 | |
IL_6S0X_130 | 1/a/934:936, 1/a/1400:1401 | Single bulged G | homologous IL_6CZR_148 NA | |
IL_6S0X_193 | 1/a/959:963, 1/a/1236:1241 | No text annotation | ||
IL_6S0X_131 | 1/a/962:963, 1/a/1236:1238 | No text annotation | homologous IL_6CZR_150 NA | |
IL_6S0X_132 | 1/a/1002:1007, 1/a/1054:1056 | No text annotation | ||
IL_6S0X_179 | 1/a/1002:1008, 1/a/1052:1056 | No text annotation | ||
IL_6S0X_133 | 1/a/1007:1008, 1/a/1052:1054 | Single stack bend | geometric IL_5J7L_269 IL_26793.1 | |
IL_6S0X_134 | 1/a/1010:1012, 1/a/1048:1050 | Major groove platform | geometric IL_4V9F_044 IL_48076.6 | |
IL_6S0X_135 | 1/a/1059:1061, 1/a/1218:1219 | No text annotation | homologous IL_6CZR_152 NA | |
IL_6S0X_136 | 1/a/1062:1067, 1/a/1214:1217 | No text annotation | homologous IL_5J7L_362 IL_49612.1 | |
IL_6S0X_137 | 1/a/1068:1069, 1/a/1209:1213 | Minor groove platform | homologous IL_5J7L_048 IL_95583.2 | |
IL_6S0X_138 | 1/a/1071:1072, 1/a/1205:1207 | Single bulged A | homologous IL_5J7L_049 IL_31462.6 | |
IL_6S0X_139 | 1/a/1072:1074, 1/a/1203:1205 | Isolated non-canonical cWW pair | geometric IL_3BNR_012 IL_28037.2 | |
IL_6S0X_140 | 1/a/1133:1143, 1/a/1152:1162 | No text annotation | ||
IL_6S0X_181 | 1/a/1257:1263, 1/a/1294:1300 | No text annotation | homologous IL_6CZR_160 NA | |
IL_6S0X_194 | 1/a/1265:1268, 1/a/1287:1292 | No text annotation | ||
IL_6S0X_182 | 1/a/1269:1274, 1/a/1281:1286 | No text annotation | ||
IL_6S0X_144 | 1/a/1313:1318, 1/a/1339:1344 | No text annotation | geometric IL_5TBW_026 NA | |
IL_6S0X_145 | 1/a/1409:1411, 1/a/1512:1515 | No text annotation | homologous IL_6CZR_165 NA | |
IL_6S0X_146 | 1/a/1411:1414, 1/a/1508:1512 | No text annotation | geometric IL_4V88_464 NA | |
IL_6S0X_147 | 1/a/1415:1417, 1/a/1505:1507 | Isolated non-canonical cWW pair | geometric IL_4P3T_006 NA | |
IL_6S0X_148 | 1/a/1417:1419, 1/a/1502:1505 | Isolated non-canonical cWW pair | geometric IL_4RUM_001 IL_57744.1 | |
IL_6S0X_149 | 1/a/1422:1424, 1/a/1497:1499 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 IL_87907.2 | |
IL_6S0X_150 | 1/a/1426:1429, 1/a/1492:1495 | Double sheared | homologous IL_5J7L_062 IL_09705.15 | |
IL_6S0X_151 | 1/a/1434:1437, 1/a/1484:1487 | Tandem non-canonical cWW pairs | geometric IL_5LQO_002 IL_85033.2 | |
IL_6S0X_152 | 1/a/1440:1445, 1/a/1477:1481 | Triple sheared related | geometric IL_4V9F_018 IL_97631.1 | |
IL_6S0X_153 | 1/a/1445:1447, 1/a/1475:1477 | Isolated non-canonical cWW pair | homologous IL_4LFB_063 IL_87907.2 | |
IL_6S0X_195 | 1/a/1450:1453, 1/a/1470:1472 | No text annotation |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
IL_6S0X_010 | No text annotation | ||
IL_6S0X_011 | No text annotation | ||
IL_6S0X_012 | No text annotation | ||
IL_6S0X_022 | No text annotation | ||
IL_6S0X_158 | No text annotation | ||
IL_6S0X_025 | No text annotation | ||
IL_6S0X_159 | No text annotation | ||
IL_6S0X_028 | No text annotation | ||
IL_6S0X_162 | No text annotation | ||
IL_6S0X_040 | No text annotation | ||
IL_6S0X_042 | No text annotation | ||
IL_6S0X_043 | No text annotation | ||
IL_6S0X_044 | Double sheared; A in syn; two near cWW pairs | ||
IL_6S0X_167 | No text annotation | ||
IL_6S0X_068 | No text annotation | ||
IL_6S0X_073 | No text annotation | ||
IL_6S0X_074 | Isolated non-canonical cWW pair | ||
IL_6S0X_076 | No text annotation | ||
IL_6S0X_173 | 8x7 Sarcin-Ricin; G-bulge | ||
IL_6S0X_090 | Isolated non-canonical cWW with bulges | ||
IL_6S0X_091 | No text annotation | ||
IL_6S0X_092 | No text annotation | ||
IL_6S0X_175 | No text annotation | ||
IL_6S0X_123 | No text annotation | ||
IL_6S0X_124 | No text annotation | ||
IL_6S0X_126 | No text annotation | ||
IL_6S0X_178 | tSH-tHW-tHS-cWW | ||
IL_6S0X_180 | No text annotation | ||
IL_6S0X_141 | No text annotation | ||
IL_6S0X_142 | No text annotation | ||
IL_6S0X_143 | No text annotation | ||
IL_6S0X_154 | No text annotation |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
J3_6S0X_024 | 1/A/30:31, 1/A/520:530, 1/A/541:555 | No text annotation | homologous J3_9DFE_002 J3_92134.2 | |
J3_6S0X_001 | 1/A/32:35, 1/A/491:507, 1/A/514:519 | No text annotation | homologous J3_9DFE_003 J3_30040.2 | |
J3_6S0X_002 | 1/A/56:57, 1/A/70:76, 1/A/109:113 | No text annotation | homologous J3_5J7L_037 J3_35667.2 | |
J3_6S0X_025 | 1/A/340:344, 1/A/359:368, 1/A/380:384 | No text annotation | ||
J3_6S0X_004 | 1/A/728:734, 1/A/818:820, 1/A/836:839 | No text annotation | homologous J3_5J7L_038 J3_64189.2 | |
J3_6S0X_005 | 1/A/743:745, 1/A/777:781, 1/A/805:808 | No text annotation | homologous J3_4WF9_003 J3_44724.7 | |
J3_6S0X_006 | 1/A/1335:1340, 1/A/1669:1671, 1/A/1683:1686 | No text annotation | homologous J3_7RQB_007 NA | |
J3_6S0X_007 | 1/A/1342:1346, 1/A/1649:1655, 1/A/1664:1667 | No text annotation | homologous J3_4WF9_005 J3_68164.1 | |
J3_6S0X_026 | 1/A/1381:1387, 1/A/1418:1422, 1/A/1439:1440 | No text annotation | homologous J3_7A0S_018 J3_31965.2 | |
J3_6S0X_027 | 1/A/1468:1473, 1/A/1611:1612, 1/A/1615:1621 | No text annotation | homologous J3_5J7L_069 J3_34864.2 | |
J3_6S0X_008 | 1/A/2118:2120, 1/A/2223:2229, 1/A/2248:2255 | No text annotation | ||
J3_6S0X_009 | 1/A/2309:2312, 1/A/2410:2422, 1/A/2448:2454 | No text annotation | ||
J3_6S0X_010 | 1/A/2322:2324, 1/A/2348:2350, 1/A/2359:2364 | No text annotation | homologous J3_4WF9_008 J3_61124.2 | |
J3_6S0X_011 | 1/A/2544:2547, 1/A/2572:2574, 1/A/2588:2594 | No text annotation | homologous J3_4WF9_009 J3_32601.5 | |
J3_6S0X_012 | 1/A/2834:2835, 1/A/2851:2857, 1/A/2901:2906 | No text annotation | ||
J3_6S0X_013 | 1/B/9:14, 1/B/66:68, 1/B/103:106 | No text annotation | ||
J3_6S0X_014 | 1/a/47:48, 1/a/369:375, 1/a/401:403 | No text annotation | homologous J3_5J7L_001 J3_67856.4 | |
J3_6S0X_028 | 1/a/47:53, 1/a/367:375, 1/a/401:403 | No text annotation | homologous J3_4LFB_014 J3_46317.4 | |
J3_6S0X_015 | 1/a/594:596, 1/a/659:662, 1/a/762:763 | No text annotation | homologous J3_5J7L_002 J3_56052.5 | |
J3_6S0X_029 | 1/a/594:596, 1/a/659:663, 1/a/759:763 | No text annotation | homologous J3_5J7L_051 J3_17385.4 | |
J3_6S0X_016 | 1/a/680:681, 1/a/725:733, 1/a/740:742 | No text annotation | homologous J3_5J7L_003 J3_11934.4 | |
J3_6S0X_017 | 1/a/834:837, 1/a/866:870, 1/a/877:883 | No text annotation | homologous J3_4LFB_001 J3_85054.4 | |
J3_6S0X_030 | 1/a/942:948, 1/a/1354:1362, 1/a/1380:1394 | No text annotation | ||
J3_6S0X_018 | 1/a/952:955, 1/a/1245:1247, 1/a/1347:1350 | No text annotation | homologous J3_5J7L_005 J3_52655.4 | |
J3_6S0X_019 | 1/a/964:971, 1/a/982:993, 1/a/1231:1235 | No text annotation | homologous J3_4LFB_004 J3_83516.4 | |
J3_6S0X_031 | 1/a/999:1002, 1/a/1056:1059, 1/a/1219:1225 | No text annotation | ||
J3_6S0X_032 | 1/a/1012:1017, 1/a/1030:1037, 1/a/1044:1048 | No text annotation | ||
J3_6S0X_035 | 1/a/1074:1079, 1/a/1118:1124, 1/a/1197:1203 | No text annotation | homologous J3_6CZR_023 NA | |
J3_6S0X_033 | 1/a/1084:1085, 1/a/1094:1098, 1/a/1109:1113 | No text annotation | homologous J3_6CZR_024 NA | |
J3_6S0X_036 | 1/a/1127:1132, 1/a/1163:1171, 1/a/1185:1194 | No text annotation | ||
J3_6S0X_023 | 1/a/1247:1251, 1/a/1306:1313, 1/a/1344:1347 | No text annotation | homologous J3_5J7L_011 J3_37047.6 | |
J4_6S0X_001 | 1/A/644:647, 1/A/669:673, 1/A/680:683, 1/A/695:701 | No text annotation | homologous J4_5J7L_020 J4_60168.1 | |
J4_6S0X_012 | 1/A/1308:1313, 1/A/1331:1332, 1/A/1689:1693, 1/A/2035:2037 | No text annotation | ||
J4_6S0X_003 | 1/A/1347:1351, 1/A/1375:1380, 1/A/1441:1442, 1/A/1641:1648 | No text annotation | homologous J4_4WF9_005 J4_69051.6 | |
J4_6S0X_004 | 1/A/1799:1803, 1/A/1815:1819, 1/A/1854:1857, 1/A/2002:2006 | No text annotation | homologous J4_5J7L_025 J4_61477.5 | |
J4_6S0X_005 | 1/A/1860:1863, 1/A/1931:1936, 1/A/1948:1961, 1/A/1991:1999 | No text annotation | ||
J4_6S0X_006 | 1/A/2101:2104, 1/A/2270:2286, 1/A/2308:2309, 1/A/2454:2462 | No text annotation | ||
J4_6S0X_007 | 1/A/2312:2320, 1/A/2366:2374, 1/A/2397:2399, 1/A/2408:2410 | No text annotation | ||
J4_6S0X_008 | 1/A/2670:2676, 1/A/2698:2704, 1/A/2757:2762, 1/A/2796:2798 | No text annotation | ||
J4_6S0X_009 | 1/a/114:122, 1/a/246:248, 1/a/294:297, 1/a/319:320 | No text annotation | ||
J4_6S0X_010 | 1/a/142:144, 1/a/178:186, 1/a/204:213, 1/a/226:229 | No text annotation | ||
J4_6S0X_011 | 1/a/583:585, 1/a/772:777, 1/a/818:829, 1/a/888:889 | No text annotation | homologous J4_5J7L_003 J4_61885.6 | |
J5_6S0X_001 | 1/A/47:54, 1/A/115:120, 1/A/129:130, 1/A/149:151, 1/A/178:180 | No text annotation | ||
J5_6S0X_009 | 1/A/271:276, 1/A/295:306, 1/A/409:421, 1/A/445:452, 1/A/467:470 | No text annotation | ||
J5_6S0X_003 | 1/A/627:631, 1/A/713:716, 1/A/854:857, 1/A/1234:1239, 1/A/1283:1294 | No text annotation | ||
J5_6S0X_004 | 1/A/1718:1726, 1/A/1750:1751, 1/A/1778:1779, 1/A/1783:1791, 1/A/2015:2017 | No text annotation | homologous J5_4WF9_005 J5_62523.6 | |
J5_6S0X_005 | 1/A/2080:2091, 1/A/2473:2482, 1/A/2523:2533, 1/A/2610:2615, 1/A/2633:2643 | No text annotation | ||
J5_6S0X_006 | 1/A/2101:2104, 1/A/2270:2286, 1/A/2308:2312, 1/A/2410:2422, 1/A/2448:2462 | No text annotation | ||
J5_6S0X_010 | 1/a/37:41, 1/a/410:416, 1/a/442:450, 1/a/500:508, 1/a/553:556 | No text annotation | ||
J5_6S0X_011 | 1/a/58:62, 1/a/105:112, 1/a/322:324, 1/a/345:347, 1/a/358:363 | No text annotation | ||
J6_6S0X_001 | 1/A/42:47, 1/A/180:186, 1/A/217:227, 1/A/234:238, 1/A/265:269, 1/A/472:483 | No text annotation | ||
J6_6S0X_002 | 1/A/42:47, 1/A/180:187, 1/A/215:227, 1/A/234:238, 1/A/265:269, 1/A/472:483 | No text annotation | ||
J7_6S0X_001 | 1/A/862:867, 1/A/880:881, 1/A/987:992, 1/A/1013:1021, 1/A/1030:1036, 1/A/1206:1209, 1/A/1223:1229 | No text annotation | ||
J10_6S0X_001 | 1/A/7:15, 1/A/570:578, 1/A/603:609, 1/A/618:622, 1/A/1299:1300, 1/A/2044:2050, 1/A/2067:2070, 1/A/2652:2657, 1/A/2815:2816, 1/A/2913:2915 | No text annotation |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
J3_6S0X_003 | No text annotation | ||
J3_6S0X_020 | No text annotation | ||
J3_6S0X_021 | No text annotation | ||
J3_6S0X_022 | No text annotation | ||
J3_6S0X_034 | No text annotation | ||
J4_6S0X_002 | No text annotation | ||
J5_6S0X_002 | No text annotation | ||
J5_6S0X_007 | No text annotation | ||
J5_6S0X_008 | No text annotation |
Coloring options: