RNA 3D Hub //

6S0X Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6S0X_0991/A/57:70No text annotation
HL_6S0X_0011/A/59:68Pseudoknot with intercalation
homologous
HL_7A0S_001
HL_93438.2
HL_6S0X_0021/A/81:104No text annotation
HL_6S0X_0031/A/122:127No text annotation
homologous
HL_4WF9_003
HL_75660.5
HL_6S0X_0041/A/136:143GNRA wlth tandem sheared
homologous
HL_4WF9_004
HL_81538.2
HL_6S0X_0051/A/157:171No text annotation
HL_6S0X_0061/A/197:204No text annotation
homologous
HL_4WF9_006
HL_30068.2
HL_6S0X_1061/A/228:233No text annotation
homologous
HL_4WF9_007
HL_53890.2
HL_6S0X_0081/A/249:255No text annotation
homologous
HL_5J7L_141
HL_37369.2
HL_6S0X_0091/A/283:288No text annotation
geometric
HL_5FMZ_001
HL_49922.4
HL_6S0X_0101/A/348:355No text annotation
geometric
HL_8H9D_001
NA
HL_6S0X_0111/A/370:378No text annotation
HL_6S0X_1071/A/422:444No text annotation
HL_6S0X_0131/A/456:463No text annotation
homologous
HL_7RQB_014
NA
HL_6S0X_0141/A/508:513GNRA
homologous
HL_7RQB_015
NA
HL_6S0X_0151/A/533:538GNRA
homologous
HL_4WF9_016
HL_37824.7
HL_6S0X_0161/A/587:594No text annotation
geometric
HL_5HR6_002
HL_50006.2
HL_6S0X_0171/A/609:618T-loop with 2 stacked bulged bases
homologous
HL_4WF9_018
HL_28252.8
HL_6S0X_0181/A/655:661No text annotation
geometric
HL_5U3G_001
HL_75660.5
HL_6S0X_0191/A/674:679GNRA
homologous
HL_7RQB_020
NA
HL_6S0X_0201/A/686:692GNRA
homologous
HL_4WF9_021
HL_37824.7
HL_6S0X_1001/A/756:765No text annotation
HL_6S0X_0221/A/789:798No text annotation
homologous
HL_7A0S_022
HL_88205.2
HL_6S0X_1011/A/824:830No text annotation
homologous
HL_4WF9_024
HL_87954.2
HL_6S0X_0241/A/871:876Mini UNCG
geometric
HL_4WF9_037
HL_48778.2
HL_6S0X_0251/A/925:942No text annotation
geometric
HL_3IGI_004
HL_04783.2
HL_6S0X_1081/A/999:1006No text annotation
HL_6S0X_0271/A/1022:1029No text annotation
HL_6S0X_0281/A/1108:1118No text annotation
HL_6S0X_0291/A/1213:1218No text annotation
HL_6S0X_0301/A/1260:1265No text annotation
geometric
HL_3HHN_007
HL_80709.3
HL_6S0X_0311/A/1318:1326T-loop with 2 stacked bulged bases
homologous
HL_7A0S_032
HL_28252.8
HL_6S0X_0321/A/1360:1368No text annotation
geometric
HL_7A0S_041
NA
HL_6S0X_0331/A/1400:1405GNRA
homologous
HL_5J7L_167
HL_37824.7
HL_6S0X_0341/A/1426:1435No text annotation
homologous
HL_4WF9_035
HL_81545.2
HL_6S0X_0351/A/1535:1541Pseudoknot geometry with 3' bulge
homologous
HL_5J7L_170
HL_57176.2
HL_6S0X_0361/A/1612:1615No text annotation
homologous
HL_7RQB_039
NA
HL_6S0X_0371/A/1656:1663No text annotation
homologous
HL_7RQB_040
NA
HL_6S0X_0381/A/1673:1681GNRA with extra cWW
homologous
HL_4WF9_039
HL_20167.2
HL_6S0X_0391/A/1735:1740UNCG
geometric
HL_4V9F_044
HL_34617.5
HL_6S0X_0401/A/1760:1769No text annotation
homologous
HL_7A0S_043
NA
HL_6S0X_0411/A/1779:1783No text annotation
homologous
HL_7RQB_044
NA
HL_6S0X_0421/A/1803:1815No text annotation
homologous
HL_7A0S_045
HL_60266.1
HL_6S0X_0431/A/1833:1838GNRA
homologous
HL_7RQB_046
NA
HL_6S0X_0441/A/1891:1905No text annotation
homologous
HL_4WF9_045
NA
HL_6S0X_0451/A/1937:1947No text annotation
HL_6S0X_0461/A/1976:1984No text annotation
homologous
HL_5J7L_182
HL_20167.2
HL_6S0X_0471/A/2054:2063No text annotation
HL_6S0X_1021/A/2156:2186No text annotation
HL_6S0X_0481/A/2168:2177No text annotation
HL_6S0X_0491/A/2236:2242No text annotation
homologous
HL_5J7L_185
HL_49922.4
HL_6S0X_0501/A/2291:2303No text annotation
homologous
HL_4WF9_050
HL_91939.2
HL_6S0X_0521/A/2351:2358Pseudoknot geometry
homologous
HL_4WF9_052
HL_93324.4
HL_6S0X_0531/A/2382:2389GNRA with extra cWW
homologous
HL_4WF9_053
HL_04259.3
HL_6S0X_0541/A/2401:2406GNRA
homologous
HL_7A0S_057
HL_37824.7
HL_6S0X_0551/A/2431:2440No text annotation
homologous
HL_7A0S_058
HL_53454.2
HL_6S0X_0561/A/2498:2506No text annotation
homologous
HL_7RQB_060
NA
HL_6S0X_0571/A/2555:2562No text annotation
homologous
HL_5J7L_194
HL_31585.4
HL_6S0X_1091/A/2578:2584No text annotation
HL_6S0X_0591/A/2621:2626GNRA
homologous
HL_5J7L_196
HL_37824.7
HL_6S0X_0601/A/2685:2690GNRA
geometric
HL_3P22_001
HL_37824.7
HL_6S0X_0611/A/2728:2733Ribsomal LSU H95
homologous
HL_4WF9_061
HL_65794.5
HL_6S0X_0621/A/2772:2786No text annotation
homologous
HL_5J7L_199
HL_74055.2
HL_6S0X_0631/A/2839:2847No text annotation
homologous
HL_4WF9_064
HL_64690.6
HL_6S0X_0641/A/2876:2881GNRA
homologous
HL_5J7L_202
HL_37824.7
HL_6S0X_1031/B/32:46No text annotation
homologous
HL_9DFE_067
HL_97756.2
HL_6S0X_0651/B/36:42No text annotation
geometric
HL_5J7L_203
HL_47787.2
HL_6S0X_0661/B/83:88Mini UNCG
homologous
HL_5J7L_204
HL_48778.2
HL_6S0X_0671/a/13:23No text annotation
homologous
HL_4LFB_001
HL_89881.5
HL_6S0X_1041/a/73:96No text annotation
HL_6S0X_0691/a/158:163GNRA
homologous
HL_4LFB_003
HL_37824.7
HL_6S0X_0701/a/187:203No text annotation
HL_6S0X_0711/a/213:226No text annotation
homologous
HL_6CZR_076
NA
HL_6S0X_0721/a/267:275GNRA related
homologous
HL_4LFB_006
HL_84299.4
HL_6S0X_0731/a/304:309GNRA
homologous
HL_5J7L_007
HL_37824.7
HL_6S0X_0741/a/328:341No text annotation
homologous
HL_5J7L_008
HL_81205.3
HL_6S0X_0751/a/350:355UNCG
homologous
HL_6CZR_080
NA
HL_6S0X_0761/a/386:393No text annotation
geometric
HL_9DE7_001
HL_77082.1
HL_6S0X_1051/a/416:442No text annotation
HL_6S0X_0771/a/427:432No text annotation
HL_6S0X_1101/a/470:479No text annotation
HL_6S0X_0791/a/530:535Mini UNCG
geometric
HL_4YAZ_004
HL_48778.2
HL_6S0X_0801/a/625:631No text annotation
homologous
HL_5J7L_014
HL_10453.3
HL_6S0X_0811/a/697:706No text annotation
homologous
HL_5J7L_015
HL_75293.5
HL_6S0X_0821/a/734:739GNRA
homologous
HL_4LFB_016
HL_37824.7
HL_6S0X_0831/a/794:804No text annotation
HL_6S0X_1111/a/849:854No text annotation
HL_6S0X_0851/a/871:876GNRA
homologous
HL_5J7L_019
HL_37824.7
HL_6S0X_0861/a/906:911GNRA
homologous
HL_4LFB_020
HL_37824.7
HL_6S0X_0871/a/972:981No text annotation
homologous
HL_5J7L_021
HL_50779.4
HL_6S0X_0881/a/1021:1026No text annotation
geometric
HL_5U3G_001
HL_75660.5
HL_6S0X_0891/a/1038:1043No text annotation
HL_6S0X_0901/a/1087:1092GNRA
homologous
HL_4LFB_024
HL_37824.7
HL_6S0X_0911/a/1100:1107T-loop related
homologous
HL_6CZR_096
NA
HL_6S0X_0921/a/1144:1151Externally structured
geometric
HL_8C3A_022
NA
HL_6S0X_0931/a/1174:1182No text annotation
HL_6S0X_0941/a/1275:1280GNRA
homologous
HL_5J7L_027
HL_37824.7
HL_6S0X_0951/a/1324:1333T-loop with 3 stacked bulged bases
homologous
HL_4LFB_029
HL_02887.3
HL_6S0X_0961/a/1366:1376No text annotation
homologous
HL_4LFB_030
HL_06226.4
HL_6S0X_0971/a/1455:1468Pseudoknot geometry
geometric
HL_4GXY_003
HL_65794.5
HL_6S0X_0981/a/1526:1531GNRA
geometric
HL_5TPY_006
HL_37824.7

Problematic loops

#loop idProblemSequence
HL_6S0X_007No text annotation
HL_6S0X_012No text annotation
HL_6S0X_021No text annotation
HL_6S0X_023No text annotation
HL_6S0X_026tRNA D-loop
HL_6S0X_051No text annotation
HL_6S0X_058No text annotation
HL_6S0X_068No text annotation
HL_6S0X_078No text annotation
HL_6S0X_084No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6S0X_0011/A/24:30,
1/A/555:561		Triple sheared with non-canonical cWW
homologous
IL_5J7L_245
IL_04021.2
IL_6S0X_0021/A/36:37,
1/A/488:490		No text annotation
IL_6S0X_0031/A/152:153,
1/A/175:177		Multiple bulged bases
geometric
IL_1R3E_001
IL_84476.1
IL_6S0X_0041/A/186:187,
1/A/215:217		Single stack bend
homologous
IL_4WF9_007
IL_90729.1
IL_6S0X_0051/A/190:197,
1/A/204:212		9x8 Sarcin-Ricin; G-bulge
homologous
IL_4WF9_008
IL_84694.2
IL_6S0X_0061/A/241:248,
1/A/256:262		8x7 Sarcin-Ricin; G-bulge
homologous
IL_7A0S_007
IL_04346.10
IL_6S0X_0071/A/302:303,
1/A/413:415		Single stack bend
geometric
IL_5J7L_269
IL_26793.1
IL_6S0X_0081/A/303:307,
1/A/408:413		No text annotation
IL_6S0X_1551/A/308:338,
1/A/386:407		No text annotation
IL_6S0X_0091/A/580:584,
1/A/597:601		No text annotation
IL_6S0X_1831/A/631:633,
1/A/712:713		No text annotation
geometric
IL_1HYS_003
IL_10569.1
IL_6S0X_1561/A/638:640,
1/A/705:707		No text annotation
IL_6S0X_0131/A/647:653,
1/A/663:669		No text annotation
IL_6S0X_0141/A/717:719,
1/A/851:853		No text annotation
geometric
IL_7RQB_017
NA
IL_6S0X_0151/A/719:723,
1/A/844:851		tHW-tHW cross-strand stack
homologous
IL_7A0S_015
IL_54041.2
IL_6S0X_0161/A/742:743,
1/A/808:810		Single bulged A
geometric
IL_4WF9_022
IL_31462.6
IL_6S0X_0171/A/747:748,
1/A/773:775		Single bulged G
geometric
IL_4V9F_026
IL_00225.13
IL_6S0X_0181/A/748:752,
1/A/769:773		Triple sheared
homologous
IL_4WF9_024
IL_50730.2
IL_6S0X_0191/A/783:785,
1/A/802:803		Major groove platform
homologous
IL_4WF9_026
IL_48076.6
IL_6S0X_0201/A/820:822,
1/A/832:836		Multiple bulged bases
homologous
IL_5J7L_265
IL_06549.2
IL_6S0X_0211/A/881:883,
1/A/984:987		No text annotation
IL_6S0X_1841/A/889:893,
1/A/975:978		No text annotation
homologous
IL_4WF9_029
IL_06300.1
IL_6S0X_1571/A/897:914,
1/A/953:971		No text annotation
IL_6S0X_0231/A/907:914,
1/A/953:960		No text annotation
IL_6S0X_0241/A/920:924,
1/A/943:947		Triple sheared
homologous
IL_5J7L_274
IL_17948.2
IL_6S0X_1851/A/1038:1040,
1/A/1203:1204		No text annotation
IL_6S0X_0261/A/1042:1046,
1/A/1197:1201		UAA/GAN
homologous
IL_7RQB_036
NA
IL_6S0X_0271/A/1048:1057,
1/A/1193:1195		No text annotation
IL_6S0X_1601/A/1062:1068,
1/A/1184:1188		Kink-turn related
homologous
IL_4WF9_039
IL_57188.5
IL_6S0X_0291/A/1068:1075,
1/A/1167:1184		No text annotation
IL_6S0X_0301/A/1075:1078,
1/A/1165:1167		No text annotation
IL_6S0X_1611/A/1075:1083,
1/A/1160:1167		No text annotation
IL_6S0X_0311/A/1079:1083,
1/A/1160:1164		No text annotation
IL_6S0X_1861/A/1087:1107,
1/A/1119:1156		No text annotation
IL_6S0X_0321/A/1212:1213,
1/A/1218:1220		No text annotation
IL_6S0X_0331/A/1243:1245,
1/A/1277:1279		Isolated cWH basepair
homologous
IL_4WF9_045
IL_10167.6
IL_6S0X_0341/A/1246:1254,
1/A/1271:1276		No text annotation
IL_6S0X_0351/A/1257:1260,
1/A/1265:1268		No text annotation
IL_6S0X_0361/A/1300:1307,
1/A/2038:2044		8x7 Sarcin-Ricin; G-bulge
homologous
IL_4WF9_048
IL_04346.10
IL_6S0X_0371/A/1356:1360,
1/A/1368:1370		C-loop
homologous
IL_5J7L_291
IL_63596.11
IL_6S0X_0381/A/1388:1392,
1/A/1413:1417		UAA/GAN
homologous
IL_5J7L_292
IL_89021.2
IL_6S0X_0391/A/1394:1398,
1/A/1407:1411		tSH-tHW-tHS
homologous
IL_5J7L_293
IL_17136.7
IL_6S0X_1871/A/1448:1451,
1/A/1634:1635		No text annotation
IL_6S0X_0411/A/1451:1465,
1/A/1624:1634		No text annotation
IL_6S0X_1631/A/1477:1479,
1/A/1604:1607		No text annotation
homologous
IL_7A0S_052
IL_14688.1
IL_6S0X_1641/A/1481:1510,
1/A/1571:1602		No text annotation
IL_6S0X_1651/A/1511:1515,
1/A/1565:1570		No text annotation
homologous
IL_4WF9_116
IL_25186.4
IL_6S0X_1661/A/1518:1522,
1/A/1558:1562		Triple sheared
homologous
IL_7A0S_056
IL_17948.2
IL_6S0X_0451/A/1524:1526,
1/A/1549:1556		No text annotation
IL_6S0X_0461/A/1532:1534,
1/A/1542:1543		No text annotation
IL_6S0X_0471/A/1695:1701,
1/A/2029:2033		No text annotation
IL_6S0X_0481/A/1701:1706,
1/A/2024:2029		No text annotation
geometric
IL_6O5F_001
NA
IL_6S0X_0491/A/1706:1709,
1/A/2022:2024		No text annotation
IL_6S0X_0501/A/1710:1713,
1/A/2020:2021		Major groove platform; stack outside cWW
geometric
IL_5J7L_306
IL_50694.7
IL_6S0X_1681/A/1710:1718,
1/A/2017:2021		No text annotation
homologous
IL_4WF9_117
IL_22854.4
IL_6S0X_0511/A/1713:1718,
1/A/2017:2020		Intercalated tWH
homologous
IL_4WF9_065
IL_76758.2
IL_6S0X_0521/A/1730:1735,
1/A/1740:1746		tSH-tSH-tHH-tHS
homologous
IL_7A0S_063
IL_47346.2
IL_6S0X_0531/A/1755:1759,
1/A/1770:1774		No text annotation
IL_6S0X_0541/A/1797:1798,
1/A/2007:2009		Single bulged A
homologous
IL_5J7L_312
IL_31462.6
IL_6S0X_0551/A/1825:1831,
1/A/1840:1848		Kink-turn related
homologous
IL_7RQB_070
NA
IL_6S0X_0561/A/1864:1867,
1/A/1929:1930		Minor groove platform, major groove intercalation
homologous
IL_5J7L_314
IL_95583.2
IL_6S0X_0571/A/1868:1869,
1/A/1925:1928		Major groove intercalation
homologous
IL_5J7L_315
IL_82107.4
IL_6S0X_0581/A/1873:1876,
1/A/1919:1921		No text annotation
geometric
IL_4V9F_072
IL_55516.2
IL_6S0X_1691/A/1873:1882,
1/A/1914:1921		No text annotation
IL_6S0X_0591/A/1876:1882,
1/A/1914:1919		No text annotation
IL_6S0X_0601/A/1883:1887,
1/A/1909:1913		Triple sheared
homologous
IL_7RQB_075
NA
IL_6S0X_0611/A/1961:1972,
1/A/1988:1991		No text annotation
homologous
IL_4WF9_077
IL_42218.2
IL_6S0X_0621/A/2077:2079,
1/A/2644:2645		Major groove platform
homologous
IL_7A0S_073
IL_48076.6
IL_6S0X_0631/A/2080:2083,
1/A/2638:2643		No text annotation
IL_6S0X_0641/A/2094:2096,
1/A/2469:2470		Single bulged U
homologous
IL_7A0S_075
IL_89505.4
IL_6S0X_0651/A/2097:2098,
1/A/2465:2468		Minor groove platform
homologous
IL_7RQB_081
NA
IL_6S0X_0661/A/2108:2110,
1/A/2263:2266		Isolated tHS basepair with bulges
homologous
IL_4WF9_082
IL_85599.2
IL_6S0X_0671/A/2123:2125,
1/A/2218:2220		Isolated non-canonical cWW pair
geometric
IL_2O3V_004
IL_28037.2
IL_6S0X_1701/A/2133:2150,
1/A/2202:2210		No text annotation
IL_6S0X_0691/A/2151:2154,
1/A/2188:2201		No text annotation
IL_6S0X_0701/A/2156:2168,
1/A/2177:2186		No text annotation
IL_6S0X_0711/A/2229:2231,
1/A/2247:2248		Single bulged G
geometric
IL_3NDB_004
IL_00225.13
IL_6S0X_0721/A/2324:2326,
1/A/2344:2348		No text annotation
IL_6S0X_1881/A/2377:2380,
1/A/2391:2394		Double sheared
homologous
IL_4WF9_087
IL_09705.15
IL_6S0X_1711/A/2428:2430,
1/A/2441:2442		No text annotation
IL_6S0X_0751/A/2484:2486,
1/A/2520:2521		Major groove platform
homologous
IL_5J7L_393
IL_07039.3
IL_6S0X_1721/A/2486:2488,
1/A/2516:2520		No text annotation
IL_6S0X_0771/A/2493:2497,
1/A/2507:2511		Triple sheared
homologous
IL_7A0S_087
IL_17948.2
IL_6S0X_0781/A/2534:2535,
1/A/2607:2609		Major groove platform
homologous
IL_7A0S_088
IL_07039.3
IL_6S0X_0791/A/2537:2539,
1/A/2601:2605		Isolated non-canonical cWW with bulges
geometric
IL_4WF9_095
IL_07785.1
IL_6S0X_0801/A/2539:2540,
1/A/2598:2601		Multiple bulged bases
homologous
IL_7RQB_098
NA
IL_6S0X_0811/A/2549:2550,
1/A/2567:2570		No text annotation
IL_6S0X_0821/A/2618:2619,
1/A/2628:2630		No text annotation
homologous
IL_8VTW_100
NA
IL_6S0X_0831/A/2663:2667,
1/A/2801:2809		tSH-tHS-tHW
homologous
IL_7RQB_102
NA
IL_6S0X_0841/A/2679:2685,
1/A/2690:2695		Sarcin-Ricin target in LSU H95; G-bulge
homologous
IL_7RQB_103
NA
IL_6S0X_0851/A/2707:2711,
1/A/2752:2754		C-loop
homologous
IL_4WF9_101
IL_63596.11
IL_6S0X_0861/A/2714:2718,
1/A/2745:2749		No text annotation
homologous
IL_4WF9_102
IL_23774.1
IL_6S0X_0871/A/2722:2723,
1/A/2738:2741		Multiple bulged bases
homologous
IL_5J7L_349
IL_42626.2
IL_6S0X_0881/A/2764:2769,
1/A/2789:2794		UAA/GAN with extra cWW
homologous
IL_7A0S_098
IL_49767.8
IL_6S0X_0891/A/2816:2831,
1/A/2909:2913		No text annotation
IL_6S0X_1891/A/2858:2859,
1/A/2898:2900		Major groove intercalation
homologous
IL_7A0S_099
IL_00225.13
IL_6S0X_1901/A/2862:2865,
1/A/2891:2895		No text annotation
IL_6S0X_1741/A/2867:2872,
1/A/2885:2889		No text annotation
IL_6S0X_0931/B/15:16,
1/B/63:65		Major groove intercalation
homologous
IL_4WF9_112
IL_31462.6
IL_6S0X_0941/B/21:29,
1/B/49:58		No text annotation
IL_6S0X_0951/B/32:36,
1/B/42:46		Symmetric double minor groove platform
homologous
IL_7RQB_114
NA
IL_6S0X_0961/B/69:77,
1/B/94:102		Bacterial 5S Loop E
homologous
IL_7A0S_106
IL_56455.6
IL_6S0X_0971/B/78:80,
1/B/91:93		Isolated non-canonical cWW pair
homologous
IL_7A0S_107
IL_07785.1
IL_6S0X_0981/a/31:33,
1/a/560:561		Single bulged G
homologous
IL_6CZR_113
NA
IL_6S0X_0991/a/45:46,
1/a/404:406		Single bulged A
homologous
IL_5J7L_002
IL_31462.6
IL_6S0X_1001/a/48:53,
1/a/367:369		No text annotation
geometric
IL_5J7L_003
IL_14177.2
IL_6S0X_1011/a/54:57,
1/a/364:366		No text annotation
IL_6S0X_1021/a/64:67,
1/a/102:103		Multiple bulged bases
homologous
IL_6CZR_117
NA
IL_6S0X_1031/a/68:71,
1/a/98:101		Tandem non-canonical cWW pairs
geometric
IL_4K27_001
IL_85033.2
IL_6S0X_1041/a/128:131,
1/a/239:240		Minor groove platform
homologous
IL_4LFB_007
IL_33761.2
IL_6S0X_1051/a/132:136,
1/a/235:238		Minor groove platform related
homologous
IL_5J7L_010
IL_64231.5
IL_6S0X_1061/a/147:153,
1/a/168:175		tWH-tWH-tHW-tHW
homologous
IL_5J7L_012
IL_80604.6
IL_6S0X_1071/a/250:255,
1/a/285:292		Kink-turn with non-sequential stacking
homologous
IL_4LFB_011
IL_46174.3
IL_6S0X_1081/a/257:260,
1/a/282:283		No text annotation
homologous
IL_4LFB_012
IL_47074.2
IL_6S0X_1091/a/300:301,
1/a/312:316		Major groove minor groove platform; mini C-loop
geometric
IL_4PDB_002
IL_68140.4
IL_6S0X_1101/a/375:377,
1/a/400:401		Single bulged U
geometric
IL_3D2V_001
IL_89505.4
IL_6S0X_1111/a/379:383,
1/a/397:398		C-loop
homologous
IL_5J7L_018
IL_03109.3
IL_6S0X_1121/a/383:384,
1/a/395:397		Single bulged G
geometric
IL_5J7L_019
IL_00225.13
IL_6S0X_1131/a/454:458,
1/a/491:496		6x5 Sarcin-Ricin; G-bulge
homologous
IL_6CZR_130
NA
IL_6S0X_1761/a/458:466,
1/a/483:491		No text annotation
homologous
IL_6CZR_360
NA
IL_6S0X_1141/a/512:519,
1/a/548:549		SSU/LSU pseudoknot
homologous
IL_5J7L_024
IL_41203.4
IL_6S0X_1151/a/523:529,
1/a/536:544		Kink-turn related
geometric
IL_4V88_415
NA
IL_6S0X_1161/a/577:583,
1/a/889:890		No text annotation
homologous
IL_5J7L_026
IL_38186.6
IL_6S0X_1171/a/588:592,
1/a/765:769		tSH-tHW-tHS
homologous
IL_6CZR_135
NA
IL_6S0X_1181/a/602:604,
1/a/652:653		Major groove platform
homologous
IL_5J7L_028
IL_48076.6
IL_6S0X_1191/a/605:607,
1/a/647:651		No text annotation
homologous
IL_6CZR_361
NA
IL_6S0X_1201/a/612:620,
1/a/636:642		No text annotation
IL_6S0X_1211/a/662:663,
1/a/759:762		Major groove platform; stack outside cWW
homologous
IL_4LFB_027
IL_50694.7
IL_6S0X_1221/a/665:666,
1/a/755:757		Major groove platform
homologous
IL_4LFB_028
IL_48076.6
IL_6S0X_1911/a/670:674,
1/a/748:751		Tandem non-canonical cWW pairs
homologous
IL_5J7L_033
IL_85033.2
IL_6S0X_1771/a/681:685,
1/a/721:725		Triple non-canonical cWW pairs
homologous
IL_4LFB_065
IL_49751.4
IL_6S0X_1251/a/690:696,
1/a/707:716		No text annotation
geometric
IL_8CRE_436
IL_89047.1
IL_6S0X_1921/a/782:787,
1/a/811:813		No text annotation
IL_6S0X_1271/a/787:791,
1/a/807:811		tSH-tHW-tHS
homologous
IL_6CZR_145
NA
IL_6S0X_1281/a/896:903,
1/a/914:919		8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_5J7L_038
IL_41756.4
IL_6S0X_1291/a/931:933,
1/a/1402:1405		Isolated non-canonical cWW pair
geometric
IL_4PCJ_001
IL_28037.2
IL_6S0X_1301/a/934:936,
1/a/1400:1401		Single bulged G
homologous
IL_6CZR_148
NA
IL_6S0X_1931/a/959:963,
1/a/1236:1241		No text annotation
IL_6S0X_1311/a/962:963,
1/a/1236:1238		No text annotation
homologous
IL_6CZR_150
NA
IL_6S0X_1321/a/1002:1007,
1/a/1054:1056		No text annotation
IL_6S0X_1791/a/1002:1008,
1/a/1052:1056		No text annotation
IL_6S0X_1331/a/1007:1008,
1/a/1052:1054		Single stack bend
geometric
IL_5J7L_269
IL_26793.1
IL_6S0X_1341/a/1010:1012,
1/a/1048:1050		Major groove platform
geometric
IL_4V9F_044
IL_48076.6
IL_6S0X_1351/a/1059:1061,
1/a/1218:1219		No text annotation
homologous
IL_6CZR_152
NA
IL_6S0X_1361/a/1062:1067,
1/a/1214:1217		No text annotation
homologous
IL_5J7L_362
IL_49612.1
IL_6S0X_1371/a/1068:1069,
1/a/1209:1213		Minor groove platform
homologous
IL_5J7L_048
IL_95583.2
IL_6S0X_1381/a/1071:1072,
1/a/1205:1207		Single bulged A
homologous
IL_5J7L_049
IL_31462.6
IL_6S0X_1391/a/1072:1074,
1/a/1203:1205		Isolated non-canonical cWW pair
geometric
IL_3BNR_012
IL_28037.2
IL_6S0X_1401/a/1133:1143,
1/a/1152:1162		No text annotation
IL_6S0X_1811/a/1257:1263,
1/a/1294:1300		No text annotation
homologous
IL_6CZR_160
NA
IL_6S0X_1941/a/1265:1268,
1/a/1287:1292		No text annotation
IL_6S0X_1821/a/1269:1274,
1/a/1281:1286		No text annotation
IL_6S0X_1441/a/1313:1318,
1/a/1339:1344		No text annotation
geometric
IL_5TBW_026
NA
IL_6S0X_1451/a/1409:1411,
1/a/1512:1515		No text annotation
homologous
IL_6CZR_165
NA
IL_6S0X_1461/a/1411:1414,
1/a/1508:1512		No text annotation
geometric
IL_4V88_464
NA
IL_6S0X_1471/a/1415:1417,
1/a/1505:1507		Isolated non-canonical cWW pair
geometric
IL_4P3T_006
NA
IL_6S0X_1481/a/1417:1419,
1/a/1502:1505		Isolated non-canonical cWW pair
geometric
IL_4RUM_001
IL_57744.1
IL_6S0X_1491/a/1422:1424,
1/a/1497:1499		Isolated non-canonical cWW pair
homologous
IL_5J7L_061
IL_87907.2
IL_6S0X_1501/a/1426:1429,
1/a/1492:1495		Double sheared
homologous
IL_5J7L_062
IL_09705.15
IL_6S0X_1511/a/1434:1437,
1/a/1484:1487		Tandem non-canonical cWW pairs
geometric
IL_5LQO_002
IL_85033.2
IL_6S0X_1521/a/1440:1445,
1/a/1477:1481		Triple sheared related
geometric
IL_4V9F_018
IL_97631.1
IL_6S0X_1531/a/1445:1447,
1/a/1475:1477		Isolated non-canonical cWW pair
homologous
IL_4LFB_063
IL_87907.2
IL_6S0X_1951/a/1450:1453,
1/a/1470:1472		No text annotation

Problematic loops

#loop idProblemSequence
IL_6S0X_010No text annotation
IL_6S0X_011No text annotation
IL_6S0X_012No text annotation
IL_6S0X_022No text annotation
IL_6S0X_158No text annotation
IL_6S0X_025No text annotation
IL_6S0X_159No text annotation
IL_6S0X_028No text annotation
IL_6S0X_162No text annotation
IL_6S0X_040No text annotation
IL_6S0X_042No text annotation
IL_6S0X_043No text annotation
IL_6S0X_044Double sheared; A in syn; two near cWW pairs
IL_6S0X_167No text annotation
IL_6S0X_068No text annotation
IL_6S0X_073No text annotation
IL_6S0X_074Isolated non-canonical cWW pair
IL_6S0X_076No text annotation
IL_6S0X_1738x7 Sarcin-Ricin; G-bulge
IL_6S0X_090Isolated non-canonical cWW with bulges
IL_6S0X_091No text annotation
IL_6S0X_092No text annotation
IL_6S0X_175No text annotation
IL_6S0X_123No text annotation
IL_6S0X_124No text annotation
IL_6S0X_126No text annotation
IL_6S0X_178tSH-tHW-tHS-cWW
IL_6S0X_180No text annotation
IL_6S0X_141No text annotation
IL_6S0X_142No text annotation
IL_6S0X_143No text annotation
IL_6S0X_154No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6S0X_0241/A/30:31,
1/A/520:530,
1/A/541:555		No text annotation
homologous
J3_9DFE_002
J3_92134.2
J3_6S0X_0011/A/32:35,
1/A/491:507,
1/A/514:519		No text annotation
homologous
J3_9DFE_003
J3_30040.2
J3_6S0X_0021/A/56:57,
1/A/70:76,
1/A/109:113		No text annotation
homologous
J3_5J7L_037
J3_35667.2
J3_6S0X_0251/A/340:344,
1/A/359:368,
1/A/380:384		No text annotation
J3_6S0X_0041/A/728:734,
1/A/818:820,
1/A/836:839		No text annotation
homologous
J3_5J7L_038
J3_64189.2
J3_6S0X_0051/A/743:745,
1/A/777:781,
1/A/805:808		No text annotation
homologous
J3_4WF9_003
J3_44724.7
J3_6S0X_0061/A/1335:1340,
1/A/1669:1671,
1/A/1683:1686		No text annotation
homologous
J3_7RQB_007
NA
J3_6S0X_0071/A/1342:1346,
1/A/1649:1655,
1/A/1664:1667		No text annotation
homologous
J3_4WF9_005
J3_68164.1
J3_6S0X_0261/A/1381:1387,
1/A/1418:1422,
1/A/1439:1440		No text annotation
homologous
J3_7A0S_018
J3_31965.2
J3_6S0X_0271/A/1468:1473,
1/A/1611:1612,
1/A/1615:1621		No text annotation
homologous
J3_5J7L_069
J3_34864.2
J3_6S0X_0081/A/2118:2120,
1/A/2223:2229,
1/A/2248:2255		No text annotation
J3_6S0X_0091/A/2309:2312,
1/A/2410:2422,
1/A/2448:2454		No text annotation
J3_6S0X_0101/A/2322:2324,
1/A/2348:2350,
1/A/2359:2364		No text annotation
homologous
J3_4WF9_008
J3_61124.2
J3_6S0X_0111/A/2544:2547,
1/A/2572:2574,
1/A/2588:2594		No text annotation
homologous
J3_4WF9_009
J3_32601.5
J3_6S0X_0121/A/2834:2835,
1/A/2851:2857,
1/A/2901:2906		No text annotation
J3_6S0X_0131/B/9:14,
1/B/66:68,
1/B/103:106		No text annotation
J3_6S0X_0141/a/47:48,
1/a/369:375,
1/a/401:403		No text annotation
homologous
J3_5J7L_001
J3_67856.4
J3_6S0X_0281/a/47:53,
1/a/367:375,
1/a/401:403		No text annotation
homologous
J3_4LFB_014
J3_46317.4
J3_6S0X_0151/a/594:596,
1/a/659:662,
1/a/762:763		No text annotation
homologous
J3_5J7L_002
J3_56052.5
J3_6S0X_0291/a/594:596,
1/a/659:663,
1/a/759:763		No text annotation
homologous
J3_5J7L_051
J3_17385.4
J3_6S0X_0161/a/680:681,
1/a/725:733,
1/a/740:742		No text annotation
homologous
J3_5J7L_003
J3_11934.4
J3_6S0X_0171/a/834:837,
1/a/866:870,
1/a/877:883		No text annotation
homologous
J3_4LFB_001
J3_85054.4
J3_6S0X_0301/a/942:948,
1/a/1354:1362,
1/a/1380:1394		No text annotation
J3_6S0X_0181/a/952:955,
1/a/1245:1247,
1/a/1347:1350		No text annotation
homologous
J3_5J7L_005
J3_52655.4
J3_6S0X_0191/a/964:971,
1/a/982:993,
1/a/1231:1235		No text annotation
homologous
J3_4LFB_004
J3_83516.4
J3_6S0X_0311/a/999:1002,
1/a/1056:1059,
1/a/1219:1225		No text annotation
J3_6S0X_0321/a/1012:1017,
1/a/1030:1037,
1/a/1044:1048		No text annotation
J3_6S0X_0351/a/1074:1079,
1/a/1118:1124,
1/a/1197:1203		No text annotation
homologous
J3_6CZR_023
NA
J3_6S0X_0331/a/1084:1085,
1/a/1094:1098,
1/a/1109:1113		No text annotation
homologous
J3_6CZR_024
NA
J3_6S0X_0361/a/1127:1132,
1/a/1163:1171,
1/a/1185:1194		No text annotation
J3_6S0X_0231/a/1247:1251,
1/a/1306:1313,
1/a/1344:1347		No text annotation
homologous
J3_5J7L_011
J3_37047.6
J4_6S0X_0011/A/644:647,
1/A/669:673,
1/A/680:683,
1/A/695:701		No text annotation
homologous
J4_5J7L_020
J4_60168.1
J4_6S0X_0121/A/1308:1313,
1/A/1331:1332,
1/A/1689:1693,
1/A/2035:2037		No text annotation
J4_6S0X_0031/A/1347:1351,
1/A/1375:1380,
1/A/1441:1442,
1/A/1641:1648		No text annotation
homologous
J4_4WF9_005
J4_69051.6
J4_6S0X_0041/A/1799:1803,
1/A/1815:1819,
1/A/1854:1857,
1/A/2002:2006		No text annotation
homologous
J4_5J7L_025
J4_61477.5
J4_6S0X_0051/A/1860:1863,
1/A/1931:1936,
1/A/1948:1961,
1/A/1991:1999		No text annotation
J4_6S0X_0061/A/2101:2104,
1/A/2270:2286,
1/A/2308:2309,
1/A/2454:2462		No text annotation
J4_6S0X_0071/A/2312:2320,
1/A/2366:2374,
1/A/2397:2399,
1/A/2408:2410		No text annotation
J4_6S0X_0081/A/2670:2676,
1/A/2698:2704,
1/A/2757:2762,
1/A/2796:2798		No text annotation
J4_6S0X_0091/a/114:122,
1/a/246:248,
1/a/294:297,
1/a/319:320		No text annotation
J4_6S0X_0101/a/142:144,
1/a/178:186,
1/a/204:213,
1/a/226:229		No text annotation
J4_6S0X_0111/a/583:585,
1/a/772:777,
1/a/818:829,
1/a/888:889		No text annotation
homologous
J4_5J7L_003
J4_61885.6
J5_6S0X_0011/A/47:54,
1/A/115:120,
1/A/129:130,
1/A/149:151,
1/A/178:180		No text annotation
J5_6S0X_0091/A/271:276,
1/A/295:306,
1/A/409:421,
1/A/445:452,
1/A/467:470		No text annotation
J5_6S0X_0031/A/627:631,
1/A/713:716,
1/A/854:857,
1/A/1234:1239,
1/A/1283:1294		No text annotation
J5_6S0X_0041/A/1718:1726,
1/A/1750:1751,
1/A/1778:1779,
1/A/1783:1791,
1/A/2015:2017		No text annotation
homologous
J5_4WF9_005
J5_62523.6
J5_6S0X_0051/A/2080:2091,
1/A/2473:2482,
1/A/2523:2533,
1/A/2610:2615,
1/A/2633:2643		No text annotation
J5_6S0X_0061/A/2101:2104,
1/A/2270:2286,
1/A/2308:2312,
1/A/2410:2422,
1/A/2448:2462		No text annotation
J5_6S0X_0101/a/37:41,
1/a/410:416,
1/a/442:450,
1/a/500:508,
1/a/553:556		No text annotation
J5_6S0X_0111/a/58:62,
1/a/105:112,
1/a/322:324,
1/a/345:347,
1/a/358:363		No text annotation
J6_6S0X_0011/A/42:47,
1/A/180:186,
1/A/217:227,
1/A/234:238,
1/A/265:269,
1/A/472:483		No text annotation
J6_6S0X_0021/A/42:47,
1/A/180:187,
1/A/215:227,
1/A/234:238,
1/A/265:269,
1/A/472:483		No text annotation
J7_6S0X_0011/A/862:867,
1/A/880:881,
1/A/987:992,
1/A/1013:1021,
1/A/1030:1036,
1/A/1206:1209,
1/A/1223:1229		No text annotation
J10_6S0X_0011/A/7:15,
1/A/570:578,
1/A/603:609,
1/A/618:622,
1/A/1299:1300,
1/A/2044:2050,
1/A/2067:2070,
1/A/2652:2657,
1/A/2815:2816,
1/A/2913:2915		No text annotation

Problematic loops

#loop idProblemSequence
J3_6S0X_003No text annotation
J3_6S0X_020No text annotation
J3_6S0X_021No text annotation
J3_6S0X_022No text annotation
J3_6S0X_034No text annotation
J4_6S0X_002No text annotation
J5_6S0X_002No text annotation
J5_6S0X_007No text annotation
J5_6S0X_008No text annotation

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