RNA 3D Hub //

7TUT Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7TUT_0011/K/37:44No text annotation
geometric
HL_5TBW_001
NA
HL_7TUT_0021/K/68:73No text annotation
homologous
HL_8C3A_002
NA
HL_7TUT_0031/K/89:95No text annotation
homologous
HL_8C3A_003
NA
HL_7TUT_0871/K/132:136No text annotation
HL_7TUT_0051/K/204:211T-loop with 2 stacked bulged bases
homologous
HL_8C3A_005
NA
HL_7TUT_0061/K/222:226No text annotation
homologous
HL_8C3A_006
NA
HL_7TUT_0071/K/230:238T-loop with unstacked turn
homologous
HL_8C3A_007
NA
HL_7TUT_0081/K/289:298No text annotation
homologous
HL_8C3A_008
NA
HL_7TUT_0091/K/314:323Pseudoknot geometry
geometric
HL_4QLM_002
HL_77600.2
HL_7TUT_0101/K/368:373GNRA
homologous
HL_8C3A_010
NA
HL_7TUT_0111/K/393:398GNRA
homologous
HL_8C3A_011
NA
HL_7TUT_0121/K/520:641tRNA D-loop
geometric
HL_7UQ6_001
HL_20811.4
HL_7TUT_0131/K/759:904No text annotation
geometric
HL_5ID6_001
HL_69752.2
HL_7TUT_0141/K/962:970No text annotation
geometric
HL_5XUZ_001
HL_69752.2
HL_7TUT_0151/K/989:1065No text annotation
HL_7TUT_0161/K/1178:1183Externally structured
geometric
HL_8C3A_022
NA
HL_7TUT_0171/K/1317:1326T-loop with 2 stacked bulged bases
homologous
HL_8C3A_014
NA
HL_7TUT_0841/K/1364:1373No text annotation
HL_7TUT_0191/K/1389:1394GNRA
homologous
HL_8C3A_016
NA
HL_7TUT_0201/K/1406B:1411AExternally structured
geometric
HL_8C3A_022
NA
HL_7TUT_0211/K/1436:1448Pseudoknot geometry
geometric
HL_1ZCI_002
HL_94376.1
HL_7TUT_0221/K/1479:1486Other HL
geometric
HL_5J7L_200
HL_08100.1
HL_7TUT_0231/K/1561:1566GNRA
homologous
HL_8C3A_019
NA
HL_7TUT_0241/K/1593:1602No text annotation
homologous
HL_8C3A_020
NA
HL_7TUT_0251/K/1627:1635No text annotation
homologous
HL_8C3A_021
NA
HL_7TUT_0261/K/1675:1680Externally structured
homologous
HL_8C3A_022
NA
HL_7TUT_0271/K/1760:1772No text annotation
HL_7TUT_0281/K/1816:1823No text annotation
geometric
HL_5TBW_024
NA
HL_7TUT_0291/K/1864:1870GNRA
homologous
HL_8C3A_025
NA
HL_7TUT_0301/K/1886:1893No text annotation
homologous
HL_8C3A_026
NA
HL_7TUT_0311/K/1972:1994No text annotation
HL_7TUT_0881/K/2006:2013No text annotation
homologous
HL_8P9A_140
HL_81538.2
HL_7TUT_0321/K/2087:2270No text annotation
HL_7TUT_0331/K/2317:2322GNRA
homologous
HL_8C3A_030
NA
HL_7TUT_0341/K/2376:2384T-loop with 2 stacked bulged bases
homologous
HL_8C3A_031
NA
HL_7TUT_0351/K/2420:2426Pseudoknot geometry with 3' bulge
homologous
HL_8C3A_032
NA
HL_7TUT_0361/K/2458:2463GNRA variation
homologous
HL_8C3A_033
NA
HL_7TUT_0371/K/2487:2491Externally structured
geometric
HL_8C3A_022
NA
HL_7TUT_0381/K/2523:2532No text annotation
homologous
HL_8C3A_035
NA
HL_7TUT_0391/K/2561:2566GNRA
geometric
HL_4NLF_001
HL_37824.7
HL_7TUT_0401/K/2578:2583GNRA
homologous
HL_8C3A_036
NA
HL_7TUT_0411/K/2624:2632No text annotation
homologous
HL_8C3A_037
NA
HL_7TUT_0421/K/2664:2670No text annotation
homologous
HL_8C3A_038
NA
HL_7TUT_0431/K/2705:2710No text annotation
geometric
HL_2Y9H_003
HL_75660.5
HL_7TUT_0441/K/2738:2742No text annotation
homologous
HL_8C3A_040
NA
HL_7TUT_0451/K/2792:2799No text annotation
homologous
HL_8C3A_041
NA
HL_7TUT_0461/K/2810:2816GNRA
homologous
HL_8C3A_042
NA
HL_7TUT_0471/K/2872:2877No text annotation
geometric
HL_7RQB_042
NA
HL_7TUT_0481/K/2901:3598Externally structured
geometric
HL_8C3A_022
NA
HL_7TUT_0491/K/3614:3618No text annotation
homologous
HL_8C3A_045
NA
HL_7TUT_0501/K/3639:3649No text annotation
homologous
HL_8C3A_046
NA
HL_7TUT_0511/K/3668:3674GNRA
homologous
HL_8C3A_047
NA
HL_7TUT_0521/K/3724:3729GNRA
homologous
HL_8C3A_048
NA
HL_7TUT_0531/K/3757:3767No text annotation
homologous
HL_8C3A_049
NA
HL_7TUT_0541/K/3796:3804No text annotation
homologous
HL_8C3A_050
NA
HL_7TUT_0551/K/3873:3882No text annotation
homologous
HL_8C3A_051
NA
HL_7TUT_0851/K/3944:4069No text annotation
HL_7TUT_0561/K/4100:4108No text annotation
geometric
HL_4V88_198
NA
HL_7TUT_0571/K/4193:4201No text annotation
homologous
HL_8C3A_055
NA
HL_7TUT_0581/K/4210:4222No text annotation
homologous
HL_8C3A_056
NA
HL_7TUT_0591/K/4250:4258No text annotation
homologous
HL_8C3A_057
NA
HL_7TUT_0601/K/4270:4277Pseudoknot geometry
homologous
HL_8C3A_058
NA
HL_7TUT_0611/K/4301:4309No text annotation
homologous
HL_8C3A_059
NA
HL_7TUT_0621/K/4321:4326GNRA
homologous
HL_8C3A_060
NA
HL_7TUT_0631/K/4352:4362No text annotation
geometric
HL_4V83_139
NA
HL_7TUT_0641/K/4417:4425No text annotation
homologous
HL_8C3A_062
NA
HL_7TUT_0651/K/4474:4481No text annotation
homologous
HL_8C3A_063
NA
HL_7TUT_0661/K/4497:4503No text annotation
homologous
HL_8C3A_064
NA
HL_7TUT_0671/K/4540:4545GNRA
homologous
HL_8C3A_065
NA
HL_7TUT_0681/K/4603:4608GNRA
homologous
HL_8C3A_066
NA
HL_7TUT_0691/K/4646:4651Ribsomal LSU H95
homologous
HL_8C3A_067
NA
HL_7TUT_0701/K/4688:4702No text annotation
homologous
HL_8C3A_068
NA
HL_7TUT_0891/K/4776:4859No text annotation
geometric
HL_8Y03_001
HL_69752.2
HL_7TUT_0721/K/4906:4915No text annotation
geometric
HL_7RQB_011
NA
HL_7TUT_0731/K/4975:4983No text annotation
homologous
HL_8C3A_071
NA
HL_7TUT_0741/K/5021:5028No text annotation
geometric
HL_1WZ2_007
HL_75660.5
HL_7TUT_0761/q/31:39tRNA anticodon loop
geometric
HL_4TUE_034
HL_06059.5
HL_7TUT_0771/q/53:61T-loop with 2 stacked bulged bases
geometric
HL_6PMO_005
NA
HL_7TUT_0861/u/32:45No text annotation
homologous
HL_8C3A_228
NA
HL_7TUT_0781/u/36:41No text annotation
homologous
HL_5TBW_185
NA
HL_7TUT_0791/u/86:91GNRA
homologous
HL_5TBW_186
NA
HL_7TUT_0801/v/47:56Pseudoknot with intercalation
geometric
HL_4V9F_001
HL_93438.2
HL_7TUT_0811/v/68:90No text annotation
homologous
HL_8C3A_075
NA
HL_7TUT_0821/v/107:112No text annotation
homologous
HL_8C3A_076
NA
HL_7TUT_0831/v/121:129No text annotation

Problematic loops

#loop idProblemSequence
HL_7TUT_004No text annotation
HL_7TUT_018No text annotation
HL_7TUT_071No text annotation
HL_7TUT_075No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7TUT_0011/K/6:7,
1/v/149:151		Single bulged C
homologous
IL_8C3A_002
NA
IL_7TUT_0021/K/12:14,
1/v/143:144		Single bulged U
homologous
IL_8C3A_003
NA
IL_7TUT_0031/K/16:18,
1/v/139:141		Isolated non-canonical cWW pair
geometric
IL_1Y27_001
IL_87907.2
IL_7TUT_0041/K/26:27,
1/K/55:57		No text annotation
homologous
IL_8C3A_004
NA
IL_7TUT_0051/K/30:37,
1/K/44:52		9x8 Sarcin-Ricin; G-bulge
geometric
IL_4WF9_008
IL_84694.2
IL_7TUT_0061/K/81:88,
1/K/96:102		No text annotation
homologous
IL_8C3A_006
NA
IL_7TUT_0071/K/118:121,
1/K/152:153		Multiple bulged bases
geometric
IL_6CZR_119
NA
IL_7TUT_1641/K/118:122,
1/K/147:153		No text annotation
IL_7TUT_0081/K/121:122,
1/K/147:152		No text annotation
homologous
IL_8C3A_007
NA
IL_7TUT_0091/K/125:126,
1/K/142:144		Single bulged C
geometric
IL_1S03_006
IL_61258.15
IL_7TUT_0101/K/168:174,
1/K/262:267		No text annotation
IL_7TUT_0111/K/180:182,
1/K/255:256		Single stack bend
geometric
IL_7RQB_005
NA
IL_7TUT_0121/K/182:189,
1/K/252:255		No text annotation
IL_7TUT_0131/K/195:196,
1/K/244:246		Single bulged C
geometric
IL_1S03_006
IL_61258.15
IL_7TUT_0141/K/199:201,
1/K/214:215		Single bulged U
homologous
IL_8C3A_013
NA
IL_7TUT_0151/K/339:342,
1/v/32:33		Minor groove platform, major groove intercalation
geometric
IL_1U9S_005
IL_95583.2
IL_7TUT_0161/K/348:350,
1/v/25:26		Single bulged A
homologous
IL_8C3A_014
NA
IL_7TUT_0171/K/387:390,
1/K/401:414		No text annotation
homologous
IL_8C3A_015
NA
IL_7TUT_0181/K/415:421,
1/v/13:19		Triple sheared with non-canonical cWW
homologous
IL_8C3A_016
NA
IL_7TUT_0191/K/443:446,
1/K/1300:1304		No text annotation
geometric
IL_7MLW_007
IL_99358.1
IL_7TUT_0201/K/448:450,
1/K/1297:1298		No text annotation
IL_7TUT_0211/K/459:460,
1/K/695:697		Single bulged C
geometric
IL_1S03_002
IL_61258.15
IL_7TUT_0221/K/462:464,
1/K/691:693		Isolated non-canonical cWW pair
geometric
IL_4V88_467
NA
IL_7TUT_0231/K/466:472,
1/K/682:689		No text annotation
IL_7TUT_0241/K/481:482,
1/K/672:673		Single bulged C
geometric
IL_7KGA_004
IL_61258.15
IL_7TUT_0251/K/482:485,
1/K/671:672		Multiple bulged bases
geometric
IL_6JXM_001
IL_84476.1
IL_7TUT_0261/K/487:488,
1/K/665:669		Multiple bulged bases
geometric
IL_1R3E_002
IL_84476.1
IL_7TUT_0271/K/491:493,
1/K/661:662		No text annotation
IL_7TUT_0281/K/497:499,
1/K/656:657		Single bulged C
geometric
IL_3SNP_003
IL_61258.15
IL_7TUT_0291/K/508:510,
1/K/649:650		Single bulged A
geometric
IL_6WPI_001
IL_31462.5
IL_7TUT_0301/K/709:710,
1/K/1286:1288		Single bulged G
geometric
IL_4LFB_036
IL_00225.13
IL_7TUT_0311/K/723:724,
1/K/942:945		Multiple bulged bases
geometric
IL_7V9E_001
NA
IL_7TUT_0321/K/727:731,
1/K/938:939		No text annotation
IL_7TUT_0331/K/732:735,
1/K/928:937		No text annotation
IL_7TUT_0341/K/737:739,
1/K/923:926		No text annotation
geometric
IL_5J7L_341
IL_42626.2
IL_7TUT_0351/K/745:752,
1/K/911:919		No text annotation
geometric
IL_5TBW_020
NA
IL_7TUT_0361/K/1074:1076,
1/K/1234:1236		Isolated non-canonical cWW pair
geometric
IL_4LFB_061
NA
IL_7TUT_0371/K/1077:1081,
1/K/1218:1233		No text annotation
IL_7TUT_0381/K/1082:1084,
1/K/1213:1217		Isolated cWS basepair
geometric
IL_4TS2_003
NA
IL_7TUT_0391/K/1086:1087,
1/K/1209:1211		Single bulged C
geometric
IL_3W3S_001
IL_61258.15
IL_7TUT_1651/K/1097:1099,
1/K/1196:1199		No text annotation
IL_7TUT_1731/K/1100:1168,
1/K/1193:1195		No text annotation
IL_7TUT_0411/K/1173:1175,
1/K/1186:1188		Isolated cWH basepair
geometric
IL_3W3S_003
IL_10167.5
IL_7TUT_0421/K/1357:1360,
1/K/1379:1382		No text annotation
IL_7TUT_1671/K/1357:1361,
1/K/1376:1382		No text annotation
IL_7TUT_0431/K/1360:1361,
1/K/1376:1379		Major groove intercalation
geometric
IL_1U9S_003
IL_82107.4
IL_7TUT_0441/K/1425:1429,
1/K/1455:1460		Triple sheared related
geometric
IL_4V9F_018
IL_97631.1
IL_7TUT_0451/K/1431:1434,
1/K/1450:1453		Double sheared
geometric
IL_4KZD_002
IL_09705.15
IL_7TUT_0461/K/1467:1468,
1/K/1496:1498		Single bulged A
homologous
IL_8C3A_026
NA
IL_7TUT_0471/K/1474:1476,
1/K/1489:1490		Single stack bend
geometric
IL_7A0S_005
IL_90729.1
IL_7TUT_0481/K/1520:1522,
1/K/1655:1657		Isolated non-canonical cWW pair
homologous
IL_8C3A_029
NA
IL_7TUT_0491/K/1522:1526,
1/K/1648:1655		No text annotation
homologous
IL_8C3A_030
NA
IL_7TUT_0501/K/1550:1551,
1/K/1576:1578		Single bulged G
homologous
IL_8C3A_032
NA
IL_7TUT_0511/K/1551:1555,
1/K/1572:1576		Triple sheared
geometric
IL_5J7L_263
IL_50730.2
IL_7TUT_0521/K/1586:1589,
1/K/1605:1607		Major groove platform with extra cWW
homologous
IL_8C3A_034
NA
IL_7TUT_0531/K/1590:1592,
1/K/1603:1604		Single bulged U
homologous
IL_8C3A_035
NA
IL_7TUT_0541/K/1624:1626,
1/K/1636:1640		Multiple bulged bases
geometric
IL_5TBW_033
NA
IL_7TUT_0551/K/1671:1673,
1/K/1682:1684		Isolated non-canonical cWW pair
homologous
IL_8C3A_037
NA
IL_7TUT_0561/K/1686:1688,
1/K/1848:1851		No text annotation
IL_7TUT_0571/K/1694:1721,
1/K/1841:1842		No text annotation
IL_7TUT_0581/K/1723:1725,
1/K/1838:1839		Single bulged G
homologous
IL_8C3A_040
NA
IL_7TUT_0591/K/1732:1737,
1/K/1792:1797		5x5 Sarcin-Ricin with intercalated A; G-bulge
geometric
IL_7A0S_027
NA
IL_7TUT_0601/K/1737:1738,
1/K/1790:1792		Minor groove platform
homologous
IL_8C3A_042
NA
IL_7TUT_0611/K/1739:1744,
1/K/1786:1789		C-loop with bulged stacked A's
homologous
IL_8C3A_043
NA
IL_7TUT_0621/K/1746:1749,
1/K/1781:1784		Tandem non-canonical cWW pairs
geometric
IL_5TBW_041
NA
IL_7TUT_0631/K/1749:1751,
1/K/1779:1781		Isolated non-canonical cWW pair
homologous
IL_8C3A_045
NA
IL_7TUT_0641/K/1753:1756,
1/K/1776:1777		Major groove platform
geometric
IL_8DP3_001
IL_02555.1
IL_7TUT_0651/K/1814:1816,
1/K/1823:1824		Single bulged G
homologous
IL_8C3A_048
NA
IL_7TUT_0661/K/1858:1860,
1/K/1874:1876		Isolated non-canonical cWW pair
homologous
IL_8C3A_049
NA
IL_7TUT_0681/K/1905:1909,
1/K/2067:2071		UAA/GAN
homologous
IL_8C3A_051
NA
IL_7TUT_0691/K/1911:1918,
1/K/2064:2065		SSU/LSU pseudoknot
homologous
IL_8C3A_052
NA
IL_7TUT_0701/K/1918:1920,
1/K/2063:2064		No text annotation
IL_7TUT_0711/K/1920:1922,
1/K/2062:2063		No text annotation
IL_7TUT_0721/K/1926:1933,
1/K/2053:2058		No text annotation
homologous
IL_8C3A_054
NA
IL_7TUT_0731/K/1933:1944,
1/K/2038:2053		No text annotation
geometric
IL_5TBW_052
NA
IL_7TUT_0741/K/1946:1948,
1/K/2035:2036		Single bulged U
homologous
IL_8C3A_056
NA
IL_7TUT_1681/K/1957:1972,
1/K/1994:2026		No text annotation
IL_7TUT_0751/K/2083:2085,
1/K/2272:2273		Single bulged U
geometric
IL_6CZR_156
NA
IL_7TUT_0761/K/2290:2292,
1/K/2342:2345		No text annotation
homologous
IL_8C3A_061
NA
IL_7TUT_0771/K/2299:2301,
1/K/2334:2335		Single bulged A
homologous
IL_8C3A_062
NA
IL_7TUT_0781/K/2302:2309,
1/K/2329:2333		Kink-turn
homologous
IL_8C3A_063
NA
IL_7TUT_0791/K/2312:2314,
1/K/2325:2326		Single bulged A
geometric
IL_7RQB_033
NA
IL_7TUT_0801/K/2358:2364,
1/K/3858:3863		No text annotation
homologous
IL_8C3A_065
NA
IL_7TUT_0811/K/2415:2419,
1/K/2427:2429		C-loop
geometric
IL_7A0S_047
IL_83150.2
IL_7TUT_0821/K/2446:2450,
1/K/2509:2514		UAA/GAN
homologous
IL_8C3A_067
NA
IL_7TUT_0831/K/2477:2479,
1/K/2499:2500		Single stack bend
geometric
IL_5J7L_032
IL_26793.1
IL_7TUT_0841/K/2542:2547,
1/K/2772:2774		Isolated non-canonical cWW pair
geometric
IL_4WF9_041
IL_57744.1
IL_7TUT_0851/K/2549:2550,
1/K/2768:2770		Single bulged U
geometric
IL_6JQ5_003
IL_89505.4
IL_7TUT_0861/K/2589:2593,
1/K/2752:2756		Triple sheared
homologous
IL_8C3A_073
NA
IL_7TUT_0871/K/2613:2614,
1/K/2724:2726		Single bulged C
homologous
IL_8C3A_075
NA
IL_7TUT_0881/K/2614:2615,
1/K/2722:2724		Single stack bend
geometric
IL_5J7L_249
IL_90729.1
IL_7TUT_0891/K/2646:2648,
1/K/2685:2688		Isolated tHS basepair with bulges
geometric
IL_4V9F_076
IL_85599.2
IL_7TUT_0901/K/2651:2653,
1/K/2681:2682		Single bulged G
geometric
IL_4WF9_023
IL_00225.13
IL_7TUT_0911/K/2656:2662,
1/K/2672:2678		No text annotation
homologous
IL_8C3A_079
NA
IL_7TUT_0921/K/2704:2705,
1/K/2710:2712		No text annotation
IL_7TUT_0931/K/2832:2838,
1/K/3850:3853		No text annotation
homologous
IL_8C3A_080
NA
IL_7TUT_0941/K/2844:2846,
1/K/3842:3844		No text annotation
homologous
IL_8C3A_081
NA
IL_7TUT_0951/K/2847:2850,
1/K/3840:3841		Major groove platform; stack outside cWW
geometric
IL_5TBW_076
NA
IL_7TUT_1691/K/2847:2855,
1/K/3837:3841		No text annotation
homologous
IL_8C3A_484
NA
IL_7TUT_0961/K/2850:2855,
1/K/3837:3840		No text annotation
homologous
IL_8C3A_083
NA
IL_7TUT_0971/K/2867:2872,
1/K/2877:2883		No text annotation
homologous
IL_8C3A_084
NA
IL_7TUT_0981/K/2889:2891,
1/K/3610:3612		Isolated non-canonical cWW pair
homologous
IL_8C3A_085
NA
IL_7TUT_0991/K/2896:2897,
1/K/3602:3605		No text annotation
homologous
IL_8C3A_086
NA
IL_7TUT_1001/K/3632:3633,
1/K/3827:3829		Single bulged A
homologous
IL_8C3A_087
NA
IL_7TUT_1011/K/3660:3665,
1/K/3677:3684		No text annotation
homologous
IL_8C3A_088
NA
IL_7TUT_1021/K/3700:3703,
1/K/3749:3750		No text annotation
homologous
IL_8C3A_089
NA
IL_7TUT_1031/K/3704:3705,
1/K/3745:3748		Multiple bulged bases
homologous
IL_8C3A_090
NA
IL_7TUT_1041/K/3708:3710,
1/K/3741:3742		Single stack bend
homologous
IL_8C3A_091
NA
IL_7TUT_1051/K/3710:3714,
1/K/3739:3741		Minor groove platform with extra cWW
geometric
IL_4WF9_003
IL_90351.1
IL_7TUT_1061/K/3715:3721,
1/K/3732:3738		No text annotation
homologous
IL_8C3A_093
NA
IL_7TUT_1071/K/3780:3781,
1/K/3811:3814		No text annotation
homologous
IL_8C3A_094
NA
IL_7TUT_1081/K/3781:3792,
1/K/3808:3811		No text annotation
geometric
IL_5TBW_090
NA
IL_7TUT_1091/K/3895:3898,
1/K/4563:4565		No text annotation
homologous
IL_8C3A_096
NA
IL_7TUT_1101/K/3900:3902,
1/K/4558:4561		No text annotation
homologous
IL_8C3A_097
NA
IL_7TUT_1111/K/3913:3915,
1/K/4388:4389		Single bulged U
homologous
IL_8C3A_098
NA
IL_7TUT_1121/K/3916:3917,
1/K/4384:4387		Minor groove platform
homologous
IL_8C3A_099
NA
IL_7TUT_1131/K/3927:3929,
1/K/4181:4184		No text annotation
homologous
IL_8C3A_100
NA
IL_7TUT_1141/K/4082:4088,
1/K/4161:4164		No text annotation
homologous
IL_8C3A_106
NA
IL_7TUT_1151/K/4095:4100,
1/K/4108:4113		No text annotation
geometric
IL_6O5F_001
NA
IL_7TUT_1161/K/4191:4192,
1/K/4202:4204		Single bulged A
homologous
IL_8C3A_107
NA
IL_7TUT_1171/K/4243:4245,
1/K/4263:4267		Isolated tHS basepair with bulges
geometric
IL_5TBW_099
NA
IL_7TUT_1181/K/4291:4293,
1/K/4317:4318		Single bulged A
geometric
IL_4V88_399
NA
IL_7TUT_1191/K/4295:4298,
1/K/4312:4315		Tandem non-canonical cWW pairs
homologous
IL_8C3A_109
NA
IL_7TUT_1201/K/4347:4350,
1/K/4364:4365		Single stack bend
geometric
IL_4V9F_081
IL_26793.1
IL_7TUT_1211/K/4400:4401,
1/K/4442:4444		Major groove platform
geometric
IL_5TBW_102
NA
IL_7TUT_1221/K/4401:4403,
1/K/4440:4442		Isolated non-canonical cWW pair
geometric
IL_5TBW_103
NA
IL_7TUT_1231/K/4403:4405,
1/K/4439:4440		Major groove platform
geometric
IL_5TBW_104
NA
IL_7TUT_1241/K/4405:4407,
1/K/4435:4439		Major groove minor groove platform with extra cWW
geometric
IL_5TBW_105
NA
IL_7TUT_1251/K/4412:4416,
1/K/4426:4430		No text annotation
homologous
IL_8C3A_114
NA
IL_7TUT_1261/K/4453:4454,
1/K/4526:4528		Major groove platform
homologous
IL_8C3A_115
NA
IL_7TUT_1271/K/4456:4458,
1/K/4520:4524		No text annotation
homologous
IL_8C3A_116
NA
IL_7TUT_1281/K/4458:4459,
1/K/4517:4520		Multiple bulged bases
geometric
IL_4V9F_088
IL_42626.2
IL_7TUT_1291/K/4466:4468,
1/K/4489:4491		Isolated non-canonical cWW pair
geometric
IL_5TBW_110
NA
IL_7TUT_1711/K/4466:4470,
1/K/4485:4491		No text annotation
IL_7TUT_1301/K/4468:4470,
1/K/4485:4489		No text annotation
IL_7TUT_1311/K/4495:4497,
1/K/4503:4505		Isolated non-canonical cWW pair
geometric
IL_5TBW_112
NA
IL_7TUT_1321/K/4537:4538,
1/K/4547:4549		Single bulged A
geometric
IL_7RQB_101
NA
IL_7TUT_1331/K/4580:4582,
1/K/4721:4723		Isolated cWH basepair
geometric
IL_3CZW_002
NA
IL_7TUT_1341/K/4582:4585,
1/K/4717:4721		Double sheared
homologous
IL_8C3A_123
NA
IL_7TUT_1351/K/4590:4592,
1/K/4618:4620		Isolated non-canonical cWW pair
homologous
IL_8C3A_124
NA
IL_7TUT_1361/K/4596:4603,
1/K/4608:4614		8x7 Sarcin-Ricin; G-bulge
geometric
IL_5TBW_116
NA
IL_7TUT_1371/K/4624:4629,
1/K/4669:4673		No text annotation
IL_7TUT_1381/K/4632:4637,
1/K/4662:4666		UAA/GAN related
homologous
IL_8C3A_127
NA
IL_7TUT_1391/K/4638:4640,
1/K/4659:4661		Isolated cWH basepair
geometric
IL_3SJ2_002
IL_10167.5
IL_7TUT_1401/K/4641:4642,
1/K/4655:4658		No text annotation
homologous
IL_8C3A_128
NA
IL_7TUT_1411/K/4680:4685,
1/K/4705:4710		UAA/GAN with extra cWW
geometric
IL_5J7L_350
IL_49767.8
IL_7TUT_1421/K/4739:4746,
1/K/4954:4960		No text annotation
IL_7TUT_1431/K/4756:4766,
1/K/4868:4877		No text annotation
homologous
IL_8P9A_352
IL_42231.1
IL_7TUT_1441/K/4769:4773,
1/K/4862:4865		Tandem non-canonical cWW pairs
geometric
IL_3WBM_002
IL_85033.2
IL_7TUT_1451/K/4885:4888,
1/K/4931:4934		Tandem non-canonical cWW pairs
geometric
IL_4K27_003
IL_77658.1
IL_7TUT_1461/K/4890:4896,
1/K/4924:4929		No text annotation
IL_7TUT_1471/K/4898:4903,
1/K/4918:4922		No text annotation
IL_7TUT_1481/K/4972:4975,
1/K/4983:4986		Tandem non-canonical cWW pairs
geometric
IL_5TBW_129
NA
IL_7TUT_1491/K/4992:4994,
1/K/5057:5059		Isolated non-canonical cWW pair
geometric
IL_5UNE_007
IL_87907.2
IL_7TUT_1501/K/4996:4997,
1/K/5053:5055		Single bulged C
geometric
IL_1KUQ_002
IL_61258.15
IL_7TUT_1511/K/5000:5002,
1/K/5045:5050		No text annotation
homologous
IL_8C3A_138
NA
IL_7TUT_1521/K/5003:5009,
1/K/5039:5044		No text annotation
IL_7TUT_1531/K/5012:5014,
1/K/5035:5036		Single bulged U
homologous
IL_8C3A_140
NA
IL_7TUT_1541/K/5014:5017,
1/K/5032:5035		Double sheared; A in syn
homologous
IL_8C3A_141
NA
IL_7TUT_1551/q/2:4,
1/q/69:71		Isolated non-canonical cWW pair
geometric
IL_3GM7_006
IL_87907.2
IL_7TUT_1561/u/15:16,
1/u/62:64		Single bulged A
homologous
IL_5TBW_372
NA
IL_7TUT_1571/u/21:27,
1/u/52:57		Minor groove platform related
homologous
IL_5TBW_373
NA
IL_7TUT_1581/u/28:29,
1/u/48:51		Major groove minor groove platform; mini C-loop
homologous
IL_4V9F_103
IL_68140.4
IL_7TUT_1591/u/32:36,
1/u/41:45		Symmetric double minor groove platform
geometric
IL_7RQB_114
NA
IL_7TUT_1601/u/71:78,
1/u/98:104		8x7 Sarcin-Ricin; G-bulge
geometric
IL_7A0S_007
IL_04346.10
IL_7TUT_1611/u/79:81,
1/u/95:97		Isolated non-canonical cWW pair
geometric
IL_4V88_470
NA
IL_7TUT_1621/u/82:85,
1/u/92:94		Isolated non-canonical cWW pair
homologous
IL_5TBW_378
NA
IL_7TUT_1631/v/64:66,
1/v/92:95		Isolated non-canonical cWW pair
geometric
IL_5TBW_145
NA

Problematic loops

#loop idProblemSequence
IL_7TUT_040No text annotation
IL_7TUT_166No text annotation
IL_7TUT_067No text annotation
IL_7TUT_170No text annotation
IL_7TUT_172No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_7TUT_0011/K/112:116,
1/K/155:160,
1/K/275:278		No text annotation
J3_7TUT_0191/K/196:199,
1/K/215:228,
1/K/240:244		No text annotation
J3_7TUT_0201/K/351:367,
1/K/374:379,
1/v/21:24		No text annotation
homologous
J3_8P9A_045
J3_30040.2
J3_7TUT_0021/K/380:387,
1/K/414:415,
1/v/19:20		No text annotation
geometric
J3_5J7L_036
J3_60031.2
J3_7TUT_0211/K/380:390,
1/K/401:415,
1/v/19:20		No text annotation
homologous
J3_8C3A_049
NA
J3_7TUT_0221/K/451:455,
1/K/701:705,
1/K/1292:1296		No text annotation
J3_7TUT_0031/K/980:984,
1/K/1070:1074,
1/K/1236:1275		No text annotation
J3_7TUT_0041/K/1531:1537,
1/K/1622:1624,
1/K/1640:1643		No text annotation
homologous
J3_8C3A_003
NA
J3_7TUT_0051/K/1545:1548,
1/K/1580:1584,
1/K/1609:1614		No text annotation
homologous
J3_8P9A_050
J3_21998.1
J3_7TUT_0061/K/1726:1727,
1/K/1802:1806,
1/K/1832:1837		No text annotation
homologous
J3_8P9A_051
J3_09667.1
J3_7TUT_0271/K/1957:1972,
1/K/1994:2005,
1/K/2014:2026		No text annotation
J3_7TUT_0071/K/2393:2399,
1/K/2805:2807,
1/K/2819:2822		No text annotation
homologous
J3_8C3A_006
NA
J3_7TUT_0081/K/2402:2405,
1/K/2785:2791,
1/K/2800:2802		No text annotation
homologous
J3_8C3A_007
NA
J3_7TUT_0091/K/2440:2445,
1/K/2515:2519,
1/K/2536:2537		No text annotation
homologous
J3_8P9A_055
J3_31965.2
J3_7TUT_0231/K/2451:2456,
1/K/2465:2476,
1/K/2501:2508		No text annotation
J3_7TUT_0101/K/2551:2555,
1/K/2572:2575,
1/K/2757:2767		No text annotation
J3_7TUT_0111/K/2575:2576,
1/K/2585:2589,
1/K/2756:2757		No text annotation
homologous
J3_8C3A_054
NA
J3_7TUT_0241/K/2598:2602,
1/K/2737:2738,
1/K/2742:2747		No text annotation
homologous
J3_8P9A_058
J3_12393.2
J3_7TUT_0121/K/3937:3939,
1/K/4074:4078,
1/K/4168:4173		No text annotation
geometric
J3_7A0S_009
J3_89368.5
J3_7TUT_0131/K/4091:4094,
1/K/4114:4129,
1/K/4155:4158		No text annotation
homologous
J3_8C3A_009
NA
J3_7TUT_0251/K/4228:4230,
1/K/4331:4342,
1/K/4370:4375		No text annotation
homologous
J3_8C3A_056
NA
J3_7TUT_0141/K/4241:4243,
1/K/4267:4269,
1/K/4278:4283		No text annotation
homologous
J3_8C3A_010
NA
J3_7TUT_0151/K/4463:4466,
1/K/4491:4493,
1/K/4507:4513		No text annotation
homologous
J3_8C3A_011
NA
J3_7TUT_0261/K/4749:4754,
1/K/4879:4883,
1/K/4936:4951		No text annotation
J3_7TUT_0161/K/4970:4972,
1/K/4986:4991,
1/K/5060:5063		No text annotation
J3_7TUT_0171/u/9:14,
1/u/65:66,
1/u/109:110		No text annotation
homologous
J3_5TBW_045
NA
J3_7TUT_0181/v/44:45,
1/v/58:64,
1/v/95:99		No text annotation
homologous
J3_8C3A_060
NA
J4_7TUT_0011/K/111:112,
1/K/278:283,
1/K/304:310,
1/K/327:330		No text annotation
homologous
J4_8P9A_012
J4_45801.6
J4_7TUT_0021/K/196:199,
1/K/215:222,
1/K/226:228,
1/K/240:244		No text annotation
J4_7TUT_0031/K/712:713,
1/K/955:961,
1/K/971:980,
1/K/1275:1284		No text annotation
J4_7TUT_0041/K/2365:2371,
1/K/2389:2391,
1/K/2824:2829,
1/K/3856:3857		No text annotation
J4_7TUT_0051/K/2406:2410,
1/K/2434:2439,
1/K/2538:2539,
1/K/2777:2784		No text annotation
homologous
J4_8C3A_004
NA
J4_7TUT_0061/K/2618:2619,
1/K/2637:2642,
1/K/2692:2698,
1/K/2718:2719		No text annotation
J4_7TUT_0071/K/3634:3638,
1/K/3650:3654,
1/K/3690:3694,
1/K/3821:3826		No text annotation
homologous
J4_8P9A_017
J4_07509.2
J4_7TUT_0081/K/3696:3698,
1/K/3752:3753,
1/K/3771:3780,
1/K/3814:3819		No text annotation
homologous
J4_8C3A_007
NA
J4_7TUT_0091/K/4231:4235,
1/K/4289:4291,
1/K/4318:4319,
1/K/4328:4330		No text annotation
J4_7TUT_0101/K/4231:4235,
1/K/4289:4293,
1/K/4317:4319,
1/K/4328:4330		No text annotation
homologous
J4_8C3A_008
NA
J4_7TUT_0111/K/4587:4590,
1/K/4620:4621,
1/K/4676:4678,
1/K/4712:4715		No text annotation
J4_7TUT_0121/q/7:10,
1/q/25:27,
1/q/43:49,
1/q/65:66		No text annotation
homologous
J4_7EQJ_002
J4_70449.27
J5_7TUT_0011/K/19:21,
1/v/35:42,
1/v/101:106,
1/v/113:114,
1/v/136:138		No text annotation
homologous
J5_8P9A_010
J5_01737.2
J5_7TUT_0021/K/1335:1340,
1/K/1516:1519,
1/K/1658:1661,
1/K/2288:2290,
1/K/2345:2351		No text annotation
homologous
J5_8P9A_011
J5_63811.1
J5_7TUT_0031/K/2855:2863,
1/K/2887:2888,
1/K/3613:3614,
1/K/3618:3626,
1/K/3835:3837		No text annotation
homologous
J5_8C3A_004
NA
J5_7TUT_0041/K/3903:3910,
1/K/4392:4400,
1/K/4444:4453,
1/K/4528:4534,
1/K/4552:4557		No text annotation
J5_7TUT_0061/K/3920:3923,
1/K/4188:4191,
1/K/4204:4205,
1/K/4227:4228,
1/K/4375:4381		No text annotation
homologous
J5_8P9A_015
J5_08912.1
J6_7TUT_0011/K/21:26,
1/K/57:67,
1/K/74:78,
1/K/105:109,
1/K/332:339,
1/v/33:35		No text annotation
J6_7TUT_0021/K/1352:1355,
1/K/1384:1388,
1/K/1395:1399,
1/K/1418:1421,
1/K/1464:1466,
1/K/1499:1504		No text annotation
J6_7TUT_0041/K/3920:3923,
1/K/4188:4191,
1/K/4204:4205,
1/K/4227:4230,
1/K/4331:4342,
1/K/4370:4381		No text annotation
J6_7TUT_0031/K/3920:3924,
1/K/4187:4191,
1/K/4204:4205,
1/K/4227:4230,
1/K/4331:4342,
1/K/4370:4381		No text annotation
J7_7TUT_0011/K/1666:1671,
1/K/1684:1685,
1/K/1852:1855,
1/K/1879:1884,
1/K/1895:1899,
1/K/2077:2078,
1/K/2278:2283		No text annotation

Problematic loops

#loop idProblemSequence
J5_7TUT_005No text annotation

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