JAR3D on RF00061

Rfam family RF00061 maps to these 33 chains: 4UJC|1|AC, 4UJD|1|BC, 4UPY|1|C, 4UPZ|1|C, 5A2Q|1|3, 5FLX|1|z, 5OA3|1|3, 6IP6|1|zz, 6IP8|1|zz, 7SYG|1|z, 7SYH|1|z, 7SYI|1|z, 7SYJ|1|z, 7SYK|1|z, 7SYL|1|z, 7SYM|1|z, 7SYN|1|z, 7SYO|1|z, 7SYP|1|z, 7SYQ|1|z, 7SYR|1|z, 7SYS|1|z, 7SYT|1|z, 7SYU|1|z, 7SYV|1|z, 7SYW|1|z, 7SYX|1|z, 9KKF|1|zz, 9KN5|1|zz, 9KN6|1|zz, 9KRP|1|zz, 9KZU|1|zz, 9KZX|1|zz See more about them at RNA 3D Hub by filtering on the chain or the Rfam family.

Rfam family RF00061 is part of clan CL00017, which includes Rfam families RF00061, RF00209 .
There are 34 chains in PDB that we map to these Rfam families: 4C4Q|1|N, 4UJC|1|AC, 4UJD|1|BC, 4UPY|1|C, 4UPZ|1|C, 5A2Q|1|3, 5FLX|1|z, 5OA3|1|3, 6IP6|1|zz, 6IP8|1|zz, 7SYG|1|z, 7SYH|1|z, 7SYI|1|z, 7SYJ|1|z, 7SYK|1|z, 7SYL|1|z, 7SYM|1|z, 7SYN|1|z, 7SYO|1|z, 7SYP|1|z, 7SYQ|1|z, 7SYR|1|z, 7SYS|1|z, 7SYT|1|z, 7SYU|1|z, 7SYV|1|z, 7SYW|1|z, 7SYX|1|z, 9KKF|1|zz, 9KN5|1|zz, 9KN6|1|zz, 9KRP|1|zz, 9KZU|1|zz, 9KZX|1|zz . See them at RNA 3D Hub by filtering on Rfam family, clan, or chain.

Loop 3 Internal loop

Column numbers: 51-57, 109-110 - View nucleotides in PDB file(s)

    Scored sequences and counts

    
    GAACUAC*GC   30

    
    GAACUUC*GC    8

    
    GAACUAA*GC    2

    
    GAACCAC*GC    1

    
    -AACUAC*GC    1

    
    Omitted sequenced and counts

    
    -------*GC    9

Click on headings to reorder table

#	Matching motif group	Acceptance Rate	Mean Cutoff Score	Full Edit Distance	Interior Edit Distance	Basepair Diagram and most common annotation
1	Motif group IL_88017.1 View motif instance in 3D Basepair signature: cWW-L-cWW-L-L-R-L	100.00	88.36	0	0
2	Motif group IL_49714.1 View motif instance in 3D Basepair signature: cWW-L-cWW-L-L	100.00	87.54	0	0	Major groove intercalation
3	Motif group IL_46086.1 View motif instance in 3D Basepair signature: cWW-L-cWW-L-L-R	100.00	37.22	5	1
4	Motif group IL_25412.1 View motif instance in 3D Basepair signature: cWW-L-cWW-L-L	90.48	1.22	7	3	Major groove intercalation
5	Motif group IL_47087.1 View motif instance in 3D Basepair signature: cWW-L-cWW-L-cWW-tWH-L-L	71.43	2.25	2	2	Kink-turn related
6	Motif group IL_27393.10 View motif instance in 3D Basepair signature: cWW-L-cWW-L-L-R-L-R	2.38	-14.82	5	3
7	Motif group IL_46112.1 View motif instance in 3D Basepair signature: cWW-L-cWW-L-L-R-L	0.00	-23.77	6	4
8	Motif group IL_33711.1 View motif instance in 3D Basepair signature: cWW-cSH-cWW-L-L-R-L	0.00	-27.66	5	4	Minor groove platform
9	Motif group IL_51191.1 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW-L-L	0.00	-28.51	8	4
10	Motif group IL_37603.1 View motif instance in 3D Basepair signature: cWW-L-cWW-L-cWW-L-L	0.00	-28.99	6	4
11	Motif group IL_87211.1 View motif instance in 3D Basepair signature: cWW-cSW-L-cWW-L	0.00	-36.30	6	2
12	Motif group IL_92634.2 View motif instance in 3D Basepair signature: cWW-L-cWW-L-L	0.00	-38.55	6	2
13	Motif group IL_19897.3 View motif instance in 3D Basepair signature: cWW-L-cWW-L-L-tWH-R-L	0.00	-40.75	7	4
14	Motif group IL_55917.1 View motif instance in 3D Basepair signature: cWW-L-cWW-L-L-R	0.00	-41.07	8	5
15	Motif group IL_82706.1 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW	0.00	-44.71	8	5
16	Motif group IL_26598.1 View motif instance in 3D Basepair signature: cWW-L-cWW-L-L-R-L-R	0.00	-45.41	4	4
17	Motif group IL_74957.1 View motif instance in 3D Basepair signature: cWW-L-cHW-L-cWW-L	0.00	-50.59	6	4	cWH basepair with bulged bases
18	Motif group IL_64842.1 View motif instance in 3D Basepair signature: cWW-L-tWH-L-cWW-L-cSH	0.00	-58.75	6	4
19	Motif group IL_98347.1 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW	0.00	-65.21	5	3
20	Motif group IL_59302.1 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW-L	0.00	-65.74	6	3
21	Motif group IL_86136.1 View motif instance in 3D Basepair signature: cWW-tSH-L-cWW-L-L-R-L	0.00	-66.99	6	5
22	Motif group IL_07173.1 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW-L	0.00	-68.65	5	4
23	Motif group IL_21173.1 View motif instance in 3D Basepair signature: cWW-L-cWW-L-L-R-L-R-L	0.00	-69.50	5	5
24	Motif group IL_95811.1 View motif instance in 3D Basepair signature: cWW-L-cWW-L-cWW-L-R-L	0.00	-69.73	5	5	Vitamin B12 Aptamer
25	Motif group IL_18354.1 View motif instance in 3D Basepair signature: cWW-L-cWW-L-L-R-L-R-L-R	0.00	-71.54	5	5
26	Motif group IL_41203.4 View motif instance in 3D Basepair signature: cWW-L-cWW-L-L-R-cSH	0.00	-72.37	5	3	SSU/LSU pseudoknot
27	Motif group IL_99380.1 View motif instance in 3D Basepair signature: cWW-L-cWW-L-L-R	0.00	-74.59	7	4
28	Motif group IL_38186.6 View motif instance in 3D Basepair signature: cWW-L-cWW-L-L-R	0.00	-75.31	6	4
29	Motif group IL_53596.1 View motif instance in 3D Basepair signature: cWW-L-cWW-L-L-R-L	0.00	-75.33	7	5
30	Motif group IL_09570.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-cWW-L-L-R	0.00	-77.40	6	6
31	Motif group IL_58960.1 View motif instance in 3D Basepair signature: cWW-L-cWW-L-tWW-L-R-L	0.00	-78.30	8	4
32	Motif group IL_82968.1 View motif instance in 3D Basepair signature: cWW-L-cWW-L-L-R-L-R-L	0.00	-78.34	6	5
33	Motif group IL_64048.1 View motif instance in 3D Basepair signature: cWW-L-cWW-L-L-tWH-R-L-R	0.00	-79.03	7	4
34	Motif group IL_85222.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-cWW-L-L	0.00	-81.82	6	6
35	Motif group IL_04650.2 View motif instance in 3D Basepair signature: cWW-cWW-L-cWW-L-R-L-L-cSH	0.00	-83.17	8	5
36	Motif group IL_91592.1 View motif instance in 3D Basepair signature: cWW-L-tHH-L-cWW-L-L	0.00	-84.78	7	4
37	Motif group IL_70376.1 View motif instance in 3D Basepair signature: cWW-L-cWW-L	0.00	-85.80	7	4
38	Motif group IL_80412.1 View motif instance in 3D Basepair signature: cWW-tSW-L-cWW-L-L-R-L	0.00	-86.97	9	6
39	Motif group IL_73452.2 View motif instance in 3D Basepair signature: cWW-L-cWW	0.00	-90.30	4	2
40	Motif group IL_38969.1 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW-L-L	0.00	-91.38	10	7	Reverse kink-turn related
41	Motif group IL_88082.1 View motif instance in 3D Basepair signature: cWW-L-tSS-L-cWW-L	0.00	-93.49	5	4
42	Motif group IL_88072.1 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW-L-L-R-L-R-L	0.00	-93.95	7	4
43	Motif group IL_00881.1 View motif instance in 3D Basepair signature: cWW-L-cWW-L	0.00	-95.27	6	2
44	Motif group IL_24499.1 View motif instance in 3D Basepair signature: cWW-cWS-L-R-L-R-cWW-L-cSH-L	0.00	-97.19	9	6
45	Motif group IL_43140.1 View motif instance in 3D Basepair signature: cWW-L-cWW-cWH-L-L	0.00	-99.33	11	7
46	Motif group IL_15218.1 View motif instance in 3D Basepair signature: cWW-L-cWW-L-L-R-L-R-L-R-L	0.00	-99.43	9	5
47	Motif group IL_82683.2 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW-L	0.00	-100.59	7	4
48	Motif group IL_69145.3 View motif instance in 3D Basepair signature: cWW-L-cWW-L-R-L-R-R	0.00	-101.19	7	5	Pseudoknot
49	Motif group IL_29346.2 View motif instance in 3D Basepair signature: cWW-L-cWW-L-L	0.00	-102.96	6	3	Left turn
50	Motif group IL_85498.1 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW-L-L-R-L-R	0.00	-103.05	8	6
51	Motif group IL_54896.1 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW-L-L-R-L-R	0.00	-103.91	8	6
52	Motif group IL_30730.1 View motif instance in 3D Basepair signature: cWW-cSH-L-R-L-cWW-L-R	0.00	-109.27	8	4
53	Motif group IL_31084.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-R-L-cWW-L	0.00	-111.42	9	6
54	Motif group IL_74184.1 View motif instance in 3D Basepair signature: cWW-L-tHS-L-cWW-L-L-L	0.00	-111.66	9	7
55	Motif group IL_97697.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-cWW-L-L	0.00	-114.21	8	6	Reverse turn
56	Motif group IL_14177.2 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW	0.00	-114.89	6	4
57	Motif group IL_44325.1 View motif instance in 3D Basepair signature: cWW-cWH-cWW-L	0.00	-114.95	5	3
58	Motif group IL_12566.4 View motif instance in 3D Basepair signature: cWW-L-tHS-L-cWW-L	0.00	-117.17	3	3
59	Motif group IL_80209.1 View motif instance in 3D Basepair signature: cWW-cHW-L-cWW-L-L-R-L-R-L	0.00	-117.53	7	6
60	Motif group IL_91636.1 View motif instance in 3D Basepair signature: cWW-tSH-L-R-L-cWW-L-L	0.00	-119.70	6	6
61	Motif group IL_73789.1 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW-L	0.00	-122.93	6	4
62	Motif group IL_11344.2 View motif instance in 3D Basepair signature: cWW-cSS-L-cWW	0.00	-123.12	7	5	180 degree turn
63	Motif group IL_56317.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-cWW	0.00	-124.97	7	6
64	Motif group IL_16665.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-R-L-cWW	0.00	-126.39	9	7
65	Motif group IL_70335.1 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW	0.00	-127.84	7	4
66	Motif group IL_06549.2 View motif instance in 3D Basepair signature: cWW-cWW	0.00	-128.79	4	3
67	Motif group IL_20031.1 View motif instance in 3D Basepair signature: cWW-L-cWW-L	0.00	-130.77	6	3
68	Motif group IL_88974.1 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW-L-L-R-L-R	0.00	-131.49	8	7
69	Motif group IL_25463.1 View motif instance in 3D Basepair signature: cWW-L-cWW-L-L	0.00	-132.45	6	4
70	Motif group IL_90346.1 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW-L-L	0.00	-133.62	8	6
71	Motif group IL_57881.1 View motif instance in 3D Basepair signature: cWW-L-cWW	0.00	-134.33	6	4	Multiple bulged bases
72	Motif group IL_89984.3 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW	0.00	-134.76	5	4
73	Motif group IL_49612.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-cWW-L	0.00	-134.88	8	5
74	Motif group IL_33623.1 View motif instance in 3D Basepair signature: cWW-L-tHH-L-R-L-cWW-L-R	0.00	-135.44	9	6
75	Motif group IL_41853.1 View motif instance in 3D Basepair signature: cWW-L-tHH-L-tHS-L-cWW-L-L	0.00	-136.23	10	7
76	Motif group IL_43622.1 View motif instance in 3D Basepair signature: cWW-cWW-L-cWW-L	0.00	-137.26	7	5
77	Motif group IL_05192.4 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-cWW-L	0.00	-137.28	8	5
78	Motif group IL_69271.3 View motif instance in 3D Basepair signature: cWW-cWW-L-R-L-cWW-L-L-R	0.00	-138.56	11	7
79	Motif group IL_42778.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-R-L-cWW	0.00	-138.86	8	6
80	Motif group IL_03350.1 View motif instance in 3D Basepair signature: cWW-tWH-cWW-L-L-cWW-L-L-L	0.00	-139.73	8	6	Reverse kink-turn related
81	Motif group IL_89312.1 View motif instance in 3D Basepair signature: cWW-tSH-L-cWS-cWW-L	0.00	-140.55	9	6
82	Motif group IL_82741.2 View motif instance in 3D Basepair signature: cWW-L-cWW-L-L	0.00	-140.59	7	3
83	Motif group IL_07171.1 View motif instance in 3D Basepair signature: cWW-L-cWW-L	0.00	-141.01	7	4	Bulged stacked bases
84	Motif group IL_47078.3 View motif instance in 3D Basepair signature: cWW-cWS-L-cWW-L	0.00	-143.56	4	2	Minor groove platform
85	Motif group IL_44874.1 View motif instance in 3D Basepair signature: cWW-tSH-tHW-L-cWW-L-L	0.00	-143.76	6	5	tSH-tHW
86	Motif group IL_94967.1 View motif instance in 3D Basepair signature: cWW-L-cWW-L	0.00	-143.94	4	4
87	Motif group IL_81522.2 View motif instance in 3D Basepair signature: cWW-L-L-cWW	0.00	-144.70	5	4	Major groove minor groove platform with intercalation; mini C-loop
88	Motif group IL_61299.4 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW-L-L	0.00	-149.73	7	4
89	Motif group IL_25573.1 View motif instance in 3D Basepair signature: cWW-tSW-L-cWW-L-L	0.00	-149.91	5	5
90	Motif group IL_33141.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-cWW-L-L	0.00	-150.05	9	6
91	Motif group IL_94684.1 View motif instance in 3D Basepair signature: cWW-tWH-R-L-cWW-L-L	0.00	-151.46	8	5
92	Motif group IL_42626.2 View motif instance in 3D Basepair signature: cWW-cWW	0.00	-151.69	6	3
93	Motif group IL_68140.4 View motif instance in 3D Basepair signature: cWW-cSH-cWW	0.00	-151.81	4	2	Major groove minor groove platform; mini C-loop
94	Motif group IL_85652.1 View motif instance in 3D Basepair signature: cWW-tSH-L-R-L-R-L-cWW-L	0.00	-152.58	9	6
95	Motif group IL_15052.4 View motif instance in 3D Basepair signature: cWW-L-cWW-L	0.00	-155.12	4	3	Minor groove platform
96	Motif group IL_70096.1 View motif instance in 3D Basepair signature: cWW-L-cWW-cWW	0.00	-155.63	10	6	Kink-turn related
97	Motif group IL_69000.1 View motif instance in 3D Basepair signature: cWW-L-cWW-L-cWW-L	0.00	-155.71	5	5
98	Motif group IL_76758.2 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW-L-L	0.00	-155.93	7	5	Intercalated tWH
99	Motif group IL_47972.1 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW-L	0.00	-157.25	8	4
100	Motif group IL_66997.2 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW-L	0.00	-158.75	4	4
101	Motif group IL_84665.1 View motif instance in 3D Basepair signature: cWW-L-cSW-cWW-L-L-R-L-R-L-R-L	0.00	-159.71	11	7
102	Motif group IL_54050.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-cWW-L-L	0.00	-163.35	12	8
103	Motif group IL_26685.1 View motif instance in 3D Basepair signature: cWW-L-cWW-L	0.00	-164.43	7	4	Multiple bulged bases
104	Motif group IL_28788.1 View motif instance in 3D Basepair signature: cWW-L-R-cWW	0.00	-165.05	6	4
105	Motif group IL_19668.1 View motif instance in 3D Basepair signature: cWW-cWW-L-cWW-L	0.00	-168.43	6	4	Isolated non-canonical cWW pair
106	Motif group IL_69440.3 View motif instance in 3D Basepair signature: cWW-L-R-cSH-cWW	0.00	-168.91	7	3
107	Motif group IL_25186.4 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-R-cWW	0.00	-169.99	5	5
108	Motif group IL_44438.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-R-L-R-cWW	0.00	-172.01	8	7
109	Motif group IL_33323.1 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW-L-L	0.00	-172.77	8	4
110	Motif group IL_96332.5 View motif instance in 3D Basepair signature: cWW-cWW-L-R-L-cWW-L	0.00	-173.06	4	4
111	Motif group IL_13358.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-R-L-cWW-L-L	0.00	-173.09	12	9
112	Motif group IL_47074.2 View motif instance in 3D Basepair signature: cWW-L-cWW-L	0.00	-173.23	5	4
113	Motif group IL_34737.1 View motif instance in 3D Basepair signature: cWW-L-cHW-L-cWW-L	0.00	-173.65	7	6
114	Motif group IL_47108.1 View motif instance in 3D Basepair signature: cWW-L-R-L-tHH-L-cWW	0.00	-173.69	8	5
115	Motif group IL_53787.1 View motif instance in 3D Basepair signature: cWW-L-cWW-L-L-R-L-R-L-R-L-R	0.00	-173.79	12	8	Pseudoknot
116	Motif group IL_22551.4 View motif instance in 3D Basepair signature: cWW-L-cWW-L	0.00	-175.42	3	3
117	Motif group IL_22829.2 View motif instance in 3D Basepair signature: cWW-L-tHS-L-R-L-cWW-L	0.00	-175.52	6	5
118	Motif group IL_10389.1 View motif instance in 3D Basepair signature: cWW-L-cWW-L-cWW	0.00	-177.72	5	4
119	Motif group IL_84476.1 View motif instance in 3D Basepair signature: cWW-cWW	0.00	-177.86	3	3	Multiple bulged bases
120	Motif group IL_66635.5 View motif instance in 3D Basepair signature: cWW-L-cWW	0.00	-178.40	3	3	Major groove intercalation
121	Motif group IL_09908.1 View motif instance in 3D Basepair signature: cWW-L-tHH-L-R-L-cWW-L	0.00	-178.60	7	5	Reverse kink-turn
122	Motif group IL_81831.1 View motif instance in 3D Basepair signature: cWW-L-cWW	0.00	-179.15	5	3	Intercalated cWS
123	Motif group IL_95583.2 View motif instance in 3D Basepair signature: cWW-L-cWW	0.00	-179.23	5	3	Minor groove platform, major groove intercalation
124	Motif group IL_18472.4 View motif instance in 3D Basepair signature: cWW-tSW-R-L-R-L-R-cWW	0.00	-179.29	6	6
125	Motif group IL_45444.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-cWW	0.00	-179.78	8	6
126	Motif group IL_04307.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R	0.00	-186.94	11	8
127	Motif group IL_78472.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-R-L-cWW-L-L	0.00	-186.96	9	8
128	Motif group IL_54177.4 View motif instance in 3D Basepair signature: cWW-cSW-tWH-L-R-L-R-tHS-cWW	0.00	-187.21	9	9
129	Motif group IL_78349.3 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-R-L-cWW-L-L	0.00	-188.51	7	7
130	Motif group IL_01994.1 View motif instance in 3D Basepair signature: cWW-cWH-tHS-cWW-cSH-cWW	0.00	-190.34	4	3
131	Motif group IL_79895.1 View motif instance in 3D Basepair signature: cWW-L-cWW-L	0.00	-192.05	4	3
132	Motif group IL_70627.3 View motif instance in 3D Basepair signature: cWW-L-R-tHW-cWW	0.00	-192.07	6	6	UAA/GAN related
133	Motif group IL_85630.1 View motif instance in 3D Basepair signature: cWW-tSH-L-R-L-R-L-cWW-L-cWW-L	0.00	-192.74	10	9
134	Motif group IL_21001.1 View motif instance in 3D Basepair signature: cWW-L-R-tHW-L-cWW	0.00	-192.96	8	6
135	Motif group IL_59258.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-cWW-L-cWW	0.00	-193.97	8	6
136	Motif group IL_11415.1 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW-L	0.00	-195.42	8	5
137	Motif group IL_31915.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-R-L-R-L-R-L-cWW	0.00	-197.24	9	9
138	Motif group IL_14368.1 View motif instance in 3D Basepair signature: cWW-L-cWW-cSH	0.00	-197.48	5	3	Major groove platform with intercalated tWH
139	Motif group IL_74746.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-R-L-R-L-R-L-R-cWW	0.00	-197.69	11	8
140	Motif group IL_73355.1 View motif instance in 3D Basepair signature: cWW-L-cWW-L	0.00	-197.97	5	3
141	Motif group IL_60657.1 View motif instance in 3D Basepair signature: cWW-cWW-L-R-L-cWW-L-L-R-L-R-L-R	0.00	-198.55	11	9
142	Motif group IL_99498.1 View motif instance in 3D Basepair signature: cWW-L-R-tHW-cWW	0.00	-200.34	8	7
143	Motif group IL_21667.1 View motif instance in 3D Basepair signature: cWW-tSH-L-R-L-cWW	0.00	-202.69	9	6
144	Motif group IL_31561.1 View motif instance in 3D Basepair signature: cWW-L-R-tWH-tWH-L-R-L-cWW	0.00	-203.30	6	6
145	Motif group IL_69229.3 View motif instance in 3D Basepair signature: cWW-L-tSH-L-tHS-cWW-cWW	0.00	-204.30	9	6	Kink-turn
146	Motif group IL_04638.3 View motif instance in 3D Basepair signature: cWW-tSH-tHW-tHS-cSH-cWW-L	0.00	-207.95	8	6	tSH-tHS-tHW
147	Motif group IL_56987.1 View motif instance in 3D Basepair signature: cWW-L-cWW	0.00	-207.96	3	3
148	Motif group IL_73002.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R	0.00	-210.34	12	11
149	Motif group IL_77278.1 View motif instance in 3D Basepair signature: cWW-tWW-L-tWW-cWW-L	0.00	-212.13	11	8
150	Motif group IL_74051.1 View motif instance in 3D Basepair signature: cWW-tSS-tSH-L-tHS-cWW-L	0.00	-212.15	9	7	Kink-turn
151	Motif group IL_76709.2 View motif instance in 3D Basepair signature: cWW-L-cWW-L	0.00	-212.55	3	3
152	Motif group IL_15698.3 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW	0.00	-213.12	4	2
153	Motif group IL_51265.3 View motif instance in 3D Basepair signature: cWW-tSS-tHS-tSH-cWW-L	0.00	-213.83	7	4	Kink-turn from U4
154	Motif group IL_33886.1 View motif instance in 3D Basepair signature: cWW-L-cWW-L-R-L-R-cWW	0.00	-216.55	9	6	Kink-turn with embedded cWW pair
155	Motif group IL_08770.1 View motif instance in 3D Basepair signature: cWW-L-R-cWW	0.00	-216.92	6	4
156	Motif group IL_77870.1 View motif instance in 3D Basepair signature: cWW-L-R-L-tHS-L-cWW-L-cWW	0.00	-218.40	8	7
157	Motif group IL_48076.6 View motif instance in 3D Basepair signature: cWW-cSH-cWW	0.00	-220.09	4	3	Major groove platform
158	Motif group IL_64403.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-R-L-cWW-L-L-R	0.00	-220.53	13	10
159	Motif group IL_22854.4 View motif instance in 3D Basepair signature: cWW-tSH-cWW-tHW-R-L-cWW-L-L-R	0.00	-222.54	6	5
160	Motif group IL_18487.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-R-L-cWW-cWW	0.00	-222.96	8	7
161	Motif group IL_17973.1 View motif instance in 3D Basepair signature: cWW-cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R	0.00	-223.54	12	11
162	Motif group IL_97273.1 View motif instance in 3D Basepair signature: cWW-tSH-cWW-L-cWW-L	0.00	-224.52	5	5
163	Motif group IL_51454.3 View motif instance in 3D Basepair signature: cWW-cSH-cWW	0.00	-225.02	5	3	Minor groove platform
164	Motif group IL_95570.1 View motif instance in 3D Basepair signature: cWW-cWH-R-L-cWW	0.00	-225.72	8	4
165	Motif group IL_55516.2 View motif instance in 3D Basepair signature: cWW-cWW-cSH-cWW	0.00	-226.55	4	2
166	Motif group IL_52743.1 View motif instance in 3D Basepair signature: cWW-tSW-L-cSW-L-cWW-L	0.00	-226.92	6	4
167	Motif group IL_31737.3 View motif instance in 3D Basepair signature: cWW-L-cWW	0.00	-227.67	5	4	Stack and bulge
168	Motif group IL_49971.1 View motif instance in 3D Basepair signature: cWW-cWH-cWW-cWW-L-L-R	0.00	-228.65	8	6
169	Motif group IL_16458.4 View motif instance in 3D Basepair signature: cWW-L-R-L-R-cSH-tWH-tHS-cWW	0.00	-228.99	7	6	Sarcin-Ricin target in LSU H95; G-bulge
170	Motif group IL_87290.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L	0.00	-229.36	13	12	Kink-turn related
171	Motif group IL_19102.1 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW	0.00	-230.55	6	3
172	Motif group IL_32056.1 View motif instance in 3D Basepair signature: cWW-L-cWW-L-L-tWH-R-L-R-L	0.00	-230.97	7	5
173	Motif group IL_61286.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-tWH-L-tHS-cWW	0.00	-231.17	8	6	8x6 Sarcin-Ricin with inserted A; G-bulge
174	Motif group IL_76319.5 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW	0.00	-231.40	8	4
175	Motif group IL_81392.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-cWW-L-L-R-L	0.00	-231.79	15	13
176	Motif group IL_62012.1 View motif instance in 3D Basepair signature: cWW-cWW-L-R-L-cWW	0.00	-232.16	6	4	Decoding loop related
177	Motif group IL_26728.3 View motif instance in 3D Basepair signature: cWW-cSH-R-cSH-cWW-cWW	0.00	-232.39	9	6
178	Motif group IL_05472.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-R-L-R-L-cWW-L	0.00	-232.97	11	10
179	Motif group IL_73759.1 View motif instance in 3D Basepair signature: cWW-cSH-tHS-cWH-cHW-cWW	0.00	-235.49	8	7	Part of G-quadruplex
180	Motif group IL_54041.2 View motif instance in 3D Basepair signature: cWW-L-R-L-R-tWH-L-cWW	0.00	-236.15	6	6	tHW-tHW cross-strand stack
181	Motif group IL_04736.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-R-L-R-cWW	0.00	-238.06	9	8
182	Motif group IL_42231.1 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW-L-cWW-cSS-L	0.00	-238.57	11	9
183	Motif group IL_09044.1 View motif instance in 3D Basepair signature: cWW-tSH-tHH-L-tHS-cWW	0.00	-239.45	7	5
184	Motif group IL_33761.2 View motif instance in 3D Basepair signature: cWW-L-cWW	0.00	-239.93	4	4
185	Motif group IL_59049.1 View motif instance in 3D Basepair signature: cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L	0.00	-239.96	11	10
186	Motif group IL_01038.1 View motif instance in 3D Basepair signature: cWW-tWH-L-R-tHS-cWW	0.00	-243.23	6	6	UAA/GAN with extra stack
187	Motif group IL_68405.1 View motif instance in 3D Basepair signature: cWW-cSS-L-tWH-tHW-cWW-cWW	0.00	-243.38	7	6	Kink-turn related
188	Motif group IL_29471.1 View motif instance in 3D Basepair signature: cWW-cWW-L-tHS-L-cWW	0.00	-244.39	9	6
189	Motif group IL_37752.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-tHW-R-L-cWW	0.00	-244.97	10	9
190	Motif group IL_88116.2 View motif instance in 3D Basepair signature: cWW-tSH-L-R-L-R-L-R-cWW-cWW	0.00	-248.55	7	7
191	Motif group IL_90729.1 View motif instance in 3D Basepair signature: cWW-L-cWW	0.00	-248.56	4	3	Single stack bend
192	Motif group IL_06300.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-cWW	0.00	-249.76	9	5
193	Motif group IL_16218.2 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-cWW	0.00	-250.21	5	5
194	Motif group IL_42314.1 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW	0.00	-251.01	7	4
195	Motif group IL_81731.1 View motif instance in 3D Basepair signature: cWW-cWW-L-R-L-R-L-cWW-L-tWW-L-R-L	0.00	-253.20	11	10
196	Motif group IL_31558.1 View motif instance in 3D Basepair signature: cWW-L-tHS-L-R-cWW	0.00	-253.97	8	5
197	Motif group IL_61438.4 View motif instance in 3D Basepair signature: cWW-L-cWW	0.00	-255.63	7	4
198	Motif group IL_28304.1 View motif instance in 3D Basepair signature: cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW	0.00	-256.38	14	11
199	Motif group IL_20047.1 View motif instance in 3D Basepair signature: cWW-tSH-tWH-cSH-cHW-cWH-cWW-cWW	0.00	-256.73	11	9
200	Motif group IL_43467.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L	0.00	-257.86	13	12	Pseudoknot
201	Motif group IL_36729.1 View motif instance in 3D Basepair signature: cWW-cWW-L-R-L-R-L-R-tWH-R-L-R-L-cWW	0.00	-258.56	10	10
202	Motif group IL_90351.1 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW	0.00	-259.61	4	3
203	Motif group IL_49061.1 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW-L	0.00	-261.33	4	4
204	Motif group IL_75294.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-cWW	0.00	-261.87	7	5
205	Motif group IL_67780.1 View motif instance in 3D Basepair signature: cWW-cSH-L-R-L-L-R-L	0.00	-263.47	7	5
206	Motif group IL_70923.9 View motif instance in 3D Basepair signature: cWW-tSS-tSH-L-tHS-tHS-cWW	0.00	-263.70	7	6	Kink-turn
207	Motif group IL_58350.1 View motif instance in 3D Basepair signature: cWW-L-R-tWH-tWH-L-R-L-cWW-L	0.00	-266.13	10	8
208	Motif group IL_01176.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-R-L-cWW	0.00	-267.74	10	6
209	Motif group IL_29223.1 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW-cWW-cWW	0.00	-269.22	9	6
210	Motif group IL_11399.2 View motif instance in 3D Basepair signature: cWW-cHW-L-R-L-cWW	0.00	-269.98	6	4
211	Motif group IL_94351.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-tHS-cWW	0.00	-270.08	9	7
212	Motif group IL_07039.3 View motif instance in 3D Basepair signature: cWW-L-cWW	0.00	-271.33	7	4	Major groove platform
213	Motif group IL_21630.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-R-cSH-R-tWH-R-cWW-cWW	0.00	-271.51	10	10
214	Motif group IL_67623.1 View motif instance in 3D Basepair signature: cWW-tSW-cSW-L-cSW-L-R-L-cWW-cWW	0.00	-271.83	10	10	Minor groove platform related
215	Motif group IL_60448.1 View motif instance in 3D Basepair signature: cWW-L-cWW-L-R-L-tWH-L-tHS-L-R-L-cWW-L-R	0.00	-272.41	13	12
216	Motif group IL_21200.1 View motif instance in 3D Basepair signature: cWW-tSH-tHW-L-cWW-L	0.00	-272.78	8	4	tSH-tHW
217	Motif group IL_82107.4 View motif instance in 3D Basepair signature: cWW-cWW	0.00	-275.22	4	3	Multiple bulged bases
218	Motif group IL_70801.1 View motif instance in 3D Basepair signature: cWW-cWW-L-R-tWW-L-R-L-cWW	0.00	-280.27	9	7
219	Motif group IL_74367.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-R-cWW	0.00	-281.22	8	7
220	Motif group IL_04073.1 View motif instance in 3D Basepair signature: cWW-L-R-L-tSH-L-R-cWW-L-R-R-L-cWW-L	0.00	-281.26	16	13
221	Motif group IL_91920.1 View motif instance in 3D Basepair signature: cWW-cWW-tHH-cWW	0.00	-281.90	7	5
222	Motif group IL_30441.1 View motif instance in 3D Basepair signature: cWW-cSH-tSW-tHW-cWW-L-L-R-L-L-R	0.00	-282.14	11	9
223	Motif group IL_59877.1 View motif instance in 3D Basepair signature: cWW-L-cWW	0.00	-282.26	3	3
224	Motif group IL_42032.1 View motif instance in 3D Basepair signature: cWW-cSH-cWW-tWH-L-cWW-L-L	0.00	-283.98	6	5
225	Motif group IL_82426.6 View motif instance in 3D Basepair signature: cWW-cHW-R-L-cHW-cHW-cHW-L-cWW-R	0.00	-286.47	11	9
226	Motif group IL_80231.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-R-tHS-cWW	0.00	-287.43	8	6	Other IL
227	Motif group IL_06029.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L	0.00	-287.95	15	14	Kink-turn
228	Motif group IL_96303.1 View motif instance in 3D Basepair signature: cWW-cSH-tSW-tHW-cWW-L-L-R-L-R	0.00	-289.44	11	9
229	Motif group IL_71598.1 View motif instance in 3D Basepair signature: cWW-tSH-L-cWW-L	0.00	-290.96	7	5
230	Motif group IL_00555.1 View motif instance in 3D Basepair signature: cWW-cWS-cWW-L-R	0.00	-292.26	8	7
231	Motif group IL_49867.1 View motif instance in 3D Basepair signature: cWW-cWW-L-R-L-R-tHW-R-L-L-cWW	0.00	-292.44	9	8
232	Motif group IL_23038.1 View motif instance in 3D Basepair signature: cWW-L-R-tWH-L-R-L-cWW-cWW	0.00	-294.60	11	8
233	Motif group IL_99358.1 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW	0.00	-295.16	5	4
234	Motif group IL_57188.5 View motif instance in 3D Basepair signature: cWW-tWW-L-tWW-cWW-cSH	0.00	-295.21	10	6	Kink-turn related
235	Motif group IL_88269.4 View motif instance in 3D Basepair signature: cWW-tWW-cSH-tWH-tHS-cWW	0.00	-295.39	7	5	6x5 Sarcin-Ricin; G-bulge
236	Motif group IL_19516.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-cWW-L-cWW-L-L-L-R-L-R	0.00	-295.61	11	11	Pseudoknot
237	Motif group IL_53448.1 View motif instance in 3D Basepair signature: cWW-tWH-cSH-cWW	0.00	-296.58	8	5	Receptor of 11-nt loop-receptor motif
238	Motif group IL_61242.1 View motif instance in 3D Basepair signature: cWW-cWW-L-R-L-R-cWW	0.00	-299.52	10	7
239	Motif group IL_02555.1 View motif instance in 3D Basepair signature: cWW-L-cWW	0.00	-300.57	6	3	Major groove platform with intercalation
240	Motif group IL_61476.2 View motif instance in 3D Basepair signature: cWW-tSH-L-cWW-L	0.00	-303.82	7	3
241	Motif group IL_82292.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-R-L-R-cWW	0.00	-304.06	9	7
242	Motif group IL_12697.1 View motif instance in 3D Basepair signature: cWW-cWW-L-R-tHS-cWW	0.00	-308.19	8	5
243	Motif group IL_34822.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-R-L-R-cWW	0.00	-308.29	10	7
244	Motif group IL_58126.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-R-L-R-L-R-L-cWW	0.00	-310.45	10	9
245	Motif group IL_09129.2 View motif instance in 3D Basepair signature: cWW-L-R-tWH-L-R-L-tWW-cWW	0.00	-310.82	12	8
246	Motif group IL_83389.2 View motif instance in 3D Basepair signature: cWW-cWW	0.00	-311.58	6	4
247	Motif group IL_48444.6 View motif instance in 3D Basepair signature: cWW-L-R-cWW-cWW	0.00	-311.86	7	5
248	Motif group IL_61341.1 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW	0.00	-315.32	8	4
249	Motif group IL_97631.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-tHS-cWW	0.00	-316.31	8	7	Triple sheared related
250	Motif group IL_20463.1 View motif instance in 3D Basepair signature: cWW-tSH-tHW-cSH-tHH-cWH-L-R-cWW-L-L-R	0.00	-317.32	11	10	7x11 Sarcin-Ricin with pseudoknotted region; G-bulge
251	Motif group IL_31531.3 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW	0.00	-318.78	5	4	Decoding loop related
252	Motif group IL_12745.1 View motif instance in 3D Basepair signature: cWW-tWH-tWH-tHW-tHW-cWW	0.00	-322.29	8	8	tWH-tWH-tHW-tHW
253	Motif group IL_15107.1 View motif instance in 3D Basepair signature: cWW-R-L-R-L-R-L-R-L-R-L-R-L-L-L-cWW	0.00	-322.70	14	13
254	Motif group IL_93889.1 View motif instance in 3D Basepair signature: cWW-R-tSH-L-cSH-L-L-R-L-R-L-R-L-R-L-R-L-L	0.00	-323.81	15	13
255	Motif group IL_41756.4 View motif instance in 3D Basepair signature: cWW-tSH-tHH-cSH-tWH-tHS-cWW-L	0.00	-325.36	7	7	8x6 Sarcin-Ricin with inserted Y; G-bulge
256	Motif group IL_64900.1 View motif instance in 3D Basepair signature: cWW-cWW-tSS-tSH-L-tHS-R-cWW-L	0.00	-325.49	11	9	Kink-turn
257	Motif group IL_55953.3 View motif instance in 3D Basepair signature: cWW-tSH-tHS-R-L-L-R-cWW	0.00	-326.67	7	7
258	Motif group IL_70411.2 View motif instance in 3D Basepair signature: cWW-tSH-L-tHH-L-cWW	0.00	-326.82	9	7
259	Motif group IL_92446.2 View motif instance in 3D Basepair signature: cWW-cWW-R-L-L	0.00	-326.90	7	5
260	Motif group IL_91698.1 View motif instance in 3D Basepair signature: cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW	0.00	-327.20	12	12
261	Motif group IL_46387.1 View motif instance in 3D Basepair signature: cWW-cWW-L-cWW-L	0.00	-328.08	6	4
262	Motif group IL_02349.4 View motif instance in 3D Basepair signature: cWW-tSH-tWH-cSH-tWH-tHS-cWW	0.00	-328.39	8	7	8x6 Sarcin-Ricin with bulged A; G-bulge
263	Motif group IL_73700.1 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW-L-cWW-tHS-cWW	0.00	-329.72	12	11
264	Motif group IL_51387.2 View motif instance in 3D Basepair signature: cWW-cSH-cWW-cWW	0.00	-330.94	5	4
265	Motif group IL_28564.1 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW	0.00	-331.35	7	5
266	Motif group IL_15991.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L	0.00	-332.49	15	15
267	Motif group IL_61258.15 View motif instance in 3D Basepair signature: cWW-L-cWW	0.00	-332.76	4	4	Single bulged C
268	Motif group IL_24254.1 View motif instance in 3D Basepair signature: cWW-cWW-tHH-cSH-tWH-tHS-cWW	0.00	-333.10	8	6	7x6 Sarcin-Ricin with UU cWW pair; G-bulge
269	Motif group IL_62654.1 View motif instance in 3D Basepair signature: cWW-tSH-tHH-tHS-cWW	0.00	-336.98	6	5	tSH-tHH-tHS
270	Motif group IL_66798.2 View motif instance in 3D Basepair signature: cWW-L-R-L-R-tHS-cWW	0.00	-337.24	8	6	AAA cross-strand stack
271	Motif group IL_50694.7 View motif instance in 3D Basepair signature: cWW-tSH-cWW-L	0.00	-338.22	5	3	Major groove platform; stack outside cWW
272	Motif group IL_26793.1 View motif instance in 3D Basepair signature: cWW-L-cWW	0.00	-338.55	5	4	Single stack bend
273	Motif group IL_71294.3 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-R-L-R-cWW	0.00	-339.35	8	6	Double sheared; A in syn; two near cWW pairs
274	Motif group IL_70670.1 View motif instance in 3D Basepair signature: cWW-R-L-R-L-R-L-R-L-R-L-R-tWH-L-R-L	0.00	-340.70	12	11	9x9 Sarcin-Ricin with pseudoknotted region; G-bulge
275	Motif group IL_45896.1 View motif instance in 3D Basepair signature: cWW-cWW-cWW	0.00	-341.30	18	15
276	Motif group IL_84694.2 View motif instance in 3D Basepair signature: cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW	0.00	-341.70	11	10	tSH-tHW-tHH-tHS
277	Motif group IL_00981.1 View motif instance in 3D Basepair signature: cWW-tWH-tHH-tHS-cWW	0.00	-342.63	8	7	UAA/GAN with tHH
278	Motif group IL_65718.4 View motif instance in 3D Basepair signature: cWW-cSH-cWS-cWW-cWW	0.00	-344.90	5	5
279	Motif group IL_68243.1 View motif instance in 3D Basepair signature: cWW-L-cWW-cWW-R-L-tHS-cWW	0.00	-349.94	10	8
280	Motif group IL_80926.1 View motif instance in 3D Basepair signature: cWW-cWW-tSH-tHS-L-cWW	0.00	-350.43	8	7
281	Motif group IL_63519.1 View motif instance in 3D Basepair signature: cWW-cWW-L-R-cSH-cWW	0.00	-350.93	7	7
282	Motif group IL_13394.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R	0.00	-354.15	17	15
283	Motif group IL_43547.1 View motif instance in 3D Basepair signature: cWW-tSH-tHH-cSH-tWH-tHS-R-L-cWW-L-cWW	0.00	-355.68	12	11	10x8 Sarcin-Ricin; G-bulge
284	Motif group IL_96759.1 View motif instance in 3D Basepair signature: cWW-tSH-tWW-cWW	0.00	-356.16	8	5
285	Motif group IL_29198.2 View motif instance in 3D Basepair signature: cWW-cWW-L-R-cSH-R-tWH-tHS-cWW	0.00	-356.91	8	6	7x7 Sarcin-Ricin with intercalated A; G-bulge
286	Motif group IL_47346.2 View motif instance in 3D Basepair signature: cWW-tSH-L-R-tHH-tHS-cWW	0.00	-364.85	7	6	tSH-tSH-tHH-tHS
287	Motif group IL_51479.1 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW	0.00	-367.41	6	4
288	Motif group IL_68574.4 View motif instance in 3D Basepair signature: cWW-tHH-tHS-cWW	0.00	-369.93	7	5
289	Motif group IL_04600.1 View motif instance in 3D Basepair signature: cWW-cWW-L-R-L-R-L-R-cWW-cWW	0.00	-370.63	11	9
290	Motif group IL_76460.1 View motif instance in 3D Basepair signature: cWW-cWW-L-tHS-L-R-L-cWW-L-L-R-L-L-R-L-R-L-R	0.00	-372.84	16	14
291	Motif group IL_44465.1 View motif instance in 3D Basepair signature: cWW-L-R-cWW	0.00	-375.69	6	5	Isolated non-canonical cWW contact
292	Motif group IL_38394.1 View motif instance in 3D Basepair signature: cWW-tWH-cWW-L-L-R-L	0.00	-375.96	8	4
293	Motif group IL_34470.3 View motif instance in 3D Basepair signature: cWW-cSH-cWW-tHH-tWH-tHS-cWW-tSH-R-cWW-L	0.00	-377.25	10	9	9x8 Sarcin-Ricin with GA cWW pair; G-bulge
294	Motif group IL_99692.2 View motif instance in 3D Basepair signature: cWW-tSS-tSH-L-R-R-L-cWW-L-L	0.00	-377.63	9	7	Kink-turn
295	Motif group IL_14688.1 View motif instance in 3D Basepair signature: cWW-cWW-cWW	0.00	-379.67	5	4	Isolated non-canonical cWW pair
296	Motif group IL_26307.2 View motif instance in 3D Basepair signature: cWW-tSH-tHH-cSH-tWH-tHS-cWW	0.00	-380.51	7	6	7x6 Sarcin-Ricin; G-bulge
297	Motif group IL_13874.1 View motif instance in 3D Basepair signature: cWW-cWH-tHS-cWW-cSH-cWH-cHW-cWW	0.00	-381.33	10	9
298	Motif group IL_64231.5 View motif instance in 3D Basepair signature: cWW-cWW-L-R-L-cWW	0.00	-383.52	5	4
299	Motif group IL_16386.4 View motif instance in 3D Basepair signature: cWW-L-cWW	0.00	-386.14	8	5
300	Motif group IL_36516.3 View motif instance in 3D Basepair signature: cWW-cWW-cSH-cWW-L	0.00	-386.28	4	3
301	Motif group IL_89505.4 View motif instance in 3D Basepair signature: cWW-L-cWW	0.00	-386.49	4	4	Single bulged U
302	Motif group IL_04346.10 View motif instance in 3D Basepair signature: cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW	0.00	-388.46	8	7	8x7 Sarcin-Ricin; G-bulge
303	Motif group IL_31462.6 View motif instance in 3D Basepair signature: cWW-L-cWW	0.00	-389.50	4	4	Single bulged A
304	Motif group IL_65594.1 View motif instance in 3D Basepair signature: cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW	0.00	-391.22	10	8	8x7 Sarcin-Ricin; G-bulge
305	Motif group IL_95727.1 View motif instance in 3D Basepair signature: cWW-L-tSH-L-tHW-tHS-R-cWW-L	0.00	-394.06	9	8	Kink-turn
306	Motif group IL_20245.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L	0.00	-395.12	19	17
307	Motif group IL_38634.5 View motif instance in 3D Basepair signature: cWW-cWH-L-R-cWW	0.00	-395.66	7	7	cWH basepair and non-canonical AC
308	Motif group IL_80398.1 View motif instance in 3D Basepair signature: cWW-L-cSW-L-R-cWW	0.00	-397.61	7	5	Minor groove platform
309	Motif group IL_09990.4 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW	0.00	-400.11	5	4
310	Motif group IL_10484.1 View motif instance in 3D Basepair signature: cWW-tSH-tHS-cWW	0.00	-402.91	7	4	Double sheared
311	Motif group IL_10796.1 View motif instance in 3D Basepair signature: cWW-L-R-cWW	0.00	-404.25	8	5
312	Motif group IL_80604.6 View motif instance in 3D Basepair signature: cWW-cWW-tWH-tWH-tHW-tHW-cWW	0.00	-406.22	8	8
313	Motif group IL_59724.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW	0.00	-406.37	9	8	8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge
314	Motif group IL_67767.4 View motif instance in 3D Basepair signature: cWW-tWH-cWW-cSH-cWW	0.00	-409.61	9	5	Receptor of 11-nt loop-receptor motif
315	Motif group IL_00225.13 View motif instance in 3D Basepair signature: cWW-L-cWW	0.00	-411.14	5	5	Single bulged G
316	Motif group IL_43858.1 View motif instance in 3D Basepair signature: cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW	0.00	-412.03	12	10
317	Motif group IL_04021.2 View motif instance in 3D Basepair signature: cWW-L-R-tSH-tSH-tHS-cWW-cWW	0.00	-415.67	11	10	Triple sheared with non-canonical cWW
318	Motif group IL_99646.2 View motif instance in 3D Basepair signature: cWW-tWH-tHS-cWW	0.00	-418.78	8	4	tSH-tHW
319	Motif group IL_41344.1 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW	0.00	-419.50	6	4
320	Motif group IL_65653.1 View motif instance in 3D Basepair signature: cWW-tSW-tHW-tWW-tWH-cSH-L-L-tHS-L-cWW-L	0.00	-420.65	11	11
321	Motif group IL_49767.8 View motif instance in 3D Basepair signature: cWW-cWW-tWH-L-tHS-cWW	0.00	-424.75	7	7	UAA/GAN with extra cWW
322	Motif group IL_50715.3 View motif instance in 3D Basepair signature: cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L	0.00	-426.69	16	15
323	Motif group IL_80298.1 View motif instance in 3D Basepair signature: cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R	0.00	-427.89	21	18
324	Motif group IL_04332.3 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW-L-L-R-L-R-L	0.00	-430.18	15	13
325	Motif group IL_29357.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-cWH-tHW-cSH-cWW-L-L-cWW-R-R	0.00	-430.94	14	13
326	Motif group IL_32016.1 View motif instance in 3D Basepair signature: cWW-tSH-tSH-tSS-tHS-L-R-cWW	0.00	-431.24	10	7	Kink-turn
327	Motif group IL_68909.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-cWW	0.00	-431.36	5	5
328	Motif group IL_34739.3 View motif instance in 3D Basepair signature: cWW-tWW-tWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L-R	0.00	-433.72	18	17
329	Motif group IL_61249.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW	0.00	-436.48	14	12
330	Motif group IL_07785.1 View motif instance in 3D Basepair signature: cWW-cWW-cWW	0.00	-437.54	4	4	Isolated non-canonical cWW pair
331	Motif group IL_57744.1 View motif instance in 3D Basepair signature: cWW-cWW-cWW	0.00	-439.51	4	4	Isolated non-canonical cWW pair
332	Motif group IL_85879.1 View motif instance in 3D Basepair signature: cWW-L-R-tHW-tHW-L-R-L-R-cWW-cWW	0.00	-442.64	11	11
333	Motif group IL_13404.2 View motif instance in 3D Basepair signature: cWW-cWW-cWW-cWW	0.00	-443.10	6	5	Tandem non-canonical cWW pairs
334	Motif group IL_94910.1 View motif instance in 3D Basepair signature: cWW-tSS-tSH-L-R-R-L-cWW-L	0.00	-444.57	8	7	Kink-turn
335	Motif group IL_89047.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-R-L-R-L-cWH-L-cWW	0.00	-447.06	15	12
336	Motif group IL_42997.3 View motif instance in 3D Basepair signature: cWW-L-R-cWW	0.00	-450.22	5	4	Isolated cWS basepair
337	Motif group IL_58103.11 View motif instance in 3D Basepair signature: cWW-cSH-cWS-L-tSW-R-R-cWW	0.00	-453.09	7	6	Symmetric double minor groove platform
338	Motif group IL_54737.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R	0.00	-453.38	21	19
339	Motif group IL_84251.1 View motif instance in 3D Basepair signature: cWW-L-tHS-cWW	0.00	-453.51	9	5
340	Motif group IL_04785.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-cWW	0.00	-456.33	8	6
341	Motif group IL_85536.2 View motif instance in 3D Basepair signature: cWW-tSH-L-R-tHS-cWW-cWW	0.00	-456.64	8	7
342	Motif group IL_65851.3 View motif instance in 3D Basepair signature: cWW-cWW-cWW-cWW-R-tHW-tSH-tHS-L	0.00	-458.60	10	10
343	Motif group IL_38507.2 View motif instance in 3D Basepair signature: cWW-tWH-L-tHS-cWW	0.00	-459.14	7	6	UAA/GAN
344	Motif group IL_57741.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-R-L-R-L-cWW-L-cWW	0.00	-460.41	15	12
345	Motif group IL_42218.2 View motif instance in 3D Basepair signature: cWW-L-R-cHW-cWW-L-L-L-R-L	0.00	-463.04	15	13
346	Motif group IL_89021.2 View motif instance in 3D Basepair signature: cWW-L-R-L-R-tHS-cWW	0.00	-464.17	9	6	UAA/GAN
347	Motif group IL_96371.1 View motif instance in 3D Basepair signature: cWW-tHH-cWW	0.00	-471.58	9	6
348	Motif group IL_77045.1 View motif instance in 3D Basepair signature: cWW-L-tSW-L-tHW-cWW-L	0.00	-473.61	11	7	Kink-turn
349	Motif group IL_29826.1 View motif instance in 3D Basepair signature: cWW-tSH-tHH-L-R-L-R-cSH-R-R-L-R-L-R-L-R-L-R-L-cWW	0.00	-476.88	21	19
350	Motif group IL_66663.1 View motif instance in 3D Basepair signature: cWW-L-tHS-tSW-tWH-cWH-cWW-L-cWW	0.00	-478.08	13	13
351	Motif group IL_58112.2 View motif instance in 3D Basepair signature: cWW-cWW-L-R-cWW	0.00	-479.21	4	4
352	Motif group IL_19048.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-cSH-L-R-cWW-cWW	0.00	-482.18	12	10
353	Motif group IL_01488.3 View motif instance in 3D Basepair signature: cWW-tSS-tSH-L-R-tHS-L-cWW	0.00	-482.45	7	6	Kink-turn
354	Motif group IL_37015.1 View motif instance in 3D Basepair signature: cWW-tSS-tSS-tHH-L-tHS-L-R-cWW-L	0.00	-483.54	9	8	Kink-turn
355	Motif group IL_28026.3 View motif instance in 3D Basepair signature: cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW	0.00	-494.59	11	10
356	Motif group IL_69543.3 View motif instance in 3D Basepair signature: cWW-tSH-L-R-tSS-tHS-L-R-cWW	0.00	-497.88	11	9
357	Motif group IL_67095.2 View motif instance in 3D Basepair signature: cWW-tWW-cWW	0.00	-499.97	7	5	Isolated tWW turn
358	Motif group IL_10167.6 View motif instance in 3D Basepair signature: cWW-cHW-cWW	0.00	-500.25	5	4	Isolated cWH basepair
359	Motif group IL_31504.1 View motif instance in 3D Basepair signature: cWW-cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L	0.00	-506.49	12	12
360	Motif group IL_17948.2 View motif instance in 3D Basepair signature: cWW-L-R-tSH-tHS-cWW	0.00	-507.16	5	5	Double sheared with non-canonical cWW
361	Motif group IL_87907.2 View motif instance in 3D Basepair signature: cWW-cWW-cWW	0.00	-509.82	5	5	Isolated non-canonical cWW pair
362	Motif group IL_83149.1 View motif instance in 3D Basepair signature: cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW	0.00	-509.94	20	20
363	Motif group IL_77691.5 View motif instance in 3D Basepair signature: cWW-tSH-L-R-L-cWW	0.00	-517.63	6	4	UAA/GAN related
364	Motif group IL_09705.15 View motif instance in 3D Basepair signature: cWW-tSH-tHS-cWW	0.00	-525.17	6	5	Double sheared
365	Motif group IL_85599.2 View motif instance in 3D Basepair signature: cWW-tHS-cWW	0.00	-530.59	9	6	Isolated tHS basepair with bulges
366	Motif group IL_17069.5 View motif instance in 3D Basepair signature: cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW	0.00	-542.06	11	10	Kink-turn related
367	Motif group IL_79846.1 View motif instance in 3D Basepair signature: cWW-R-L-L-tWH-cWW-L-L-L-R-L-R-cSH-L-L	0.00	-548.22	18	18
368	Motif group IL_53581.1 View motif instance in 3D Basepair signature: cWW-tWW-L-tWH-cSS-tSS-tWH-cSS-tWH-R-tSS-R-L-L-cWW-L-cWW	0.00	-552.64	16	15	Kink-turn related
369	Motif group IL_60797.1 View motif instance in 3D Basepair signature: cWW-cWW-tSH-tHW-tHW-L-R-L-cWW-cWW	0.00	-553.27	12	12
370	Motif group IL_77658.1 View motif instance in 3D Basepair signature: cWW-cWW-cWW-cWW	0.00	-566.86	6	5	Tandem non-canonical cWW pairs
371	Motif group IL_23774.1 View motif instance in 3D Basepair signature: cWW-L-R-L-tHS-cWW	0.00	-573.39	7	5	UAA/GAN variation
372	Motif group IL_49751.4 View motif instance in 3D Basepair signature: cWW-cWW-cWW-cWW-cWW	0.00	-574.59	5	5	Triple non-canonical cWW pairs
373	Motif group IL_85033.2 View motif instance in 3D Basepair signature: cWW-cWW-cWW-cWW	0.00	-591.68	5	5	Tandem non-canonical cWW pairs
374	Motif group IL_25872.4 View motif instance in 3D Basepair signature: cWW-cWW-cWH-cWW	0.00	-594.68	5	5
375	Motif group IL_38862.4 View motif instance in 3D Basepair signature: cWW-cSH-R-tWH-tHS-cWW	0.00	-615.08	8	6	5x5 Sarcin-Ricin with intercalated A; G-bulge
376	Motif group IL_64858.3 View motif instance in 3D Basepair signature: cWW-cHW-cWH-R-L-cWH-cHW-cHW-cWH-cWH-cHW-L-cWW-L-R-cWW-L-cWW	0.00	-637.44	18	18
377	Motif group IL_84409.1 View motif instance in 3D Basepair signature: cWW-tSS-L-cWH-L-cSH-cHW-tWH-cSS-tWH-tSW-cWS-R-L-R-cSH-R-cWW-L	0.00	-4542.17	18	17
378	Motif group IL_75283.2 View motif instance in 3D Basepair signature: cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R	0.00	-4693.24	11	9
379	Motif group IL_56455.6 View motif instance in 3D Basepair signature: cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW	0.00	-5017.93	11	10	Bacterial 5S Loop E
380	Motif group IL_86012.1 View motif instance in 3D Basepair signature: cWW-tHS-tWH-cWH-cWW-L-L-cWW	0.00	-5064.15	12	10
381	Motif group IL_89099.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-R-L-R-cWW	0.00	-5144.56	9	9	Other IL
382	Motif group IL_69986.1 View motif instance in 3D Basepair signature: cWW-cHW-L-R-L-R-cWH-cWW	0.00	-5185.73	10	7
383	Motif group IL_06691.1 View motif instance in 3D Basepair signature: cWW-cWS-L-R-L-R-cWW-L	0.00	-5190.60	4	4
384	Motif group IL_81516.2 View motif instance in 3D Basepair signature: cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L	0.00	-5283.04	10	10
385	Motif group IL_19852.1 View motif instance in 3D Basepair signature: cWW-tWH-cWW-cWH-cWH-cWH	0.00	-5289.34	11	8	Part of G-quadruplex
386	Motif group IL_46174.3 View motif instance in 3D Basepair signature: cWW-cSS-tSS-tSH-L-cWW-tHW-cWW	0.00	-5300.42	9	7	Kink-turn with non-sequential stacking
387	Motif group IL_44624.1 View motif instance in 3D Basepair signature: cWW-tWH-cWW-L-cWW-tSS-cSS-cWW-L	0.00	-5321.21	8	7
388	Motif group IL_17765.1 View motif instance in 3D Basepair signature: cWW-tWH-cHW-L-tSS-cSS-cWW-R-L	0.00	-5343.52	10	9
389	Motif group IL_07469.2 View motif instance in 3D Basepair signature: cWW-tSH-cWW-cSH-R-cWW	0.00	-5605.70	8	5
390	Motif group IL_96788.1 View motif instance in 3D Basepair signature: cWW-tHW-tHS-cWW-cWW	0.00	-5631.49	7	7
391	Motif group IL_76308.6 View motif instance in 3D Basepair signature: cWW-tSH-tHW-tHS-cWW-cWW	0.00	-5749.83	8	7	tSH-tWH-tHS-cWW
392	Motif group IL_87284.1 View motif instance in 3D Basepair signature: cWW-tSH-tHW-tWH-tHS-cWW	0.00	-6032.79	9	6	tSH-tHW-tWH-tHS
393	Motif group IL_22564.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-cWW	0.00	-6220.12	7	7
394	Motif group IL_96236.1 View motif instance in 3D Basepair signature: cWW-tWW-cWW-L-cWW	0.00	-6255.56	7	6
395	Motif group IL_06136.2 View motif instance in 3D Basepair signature: cWW-tHS-cWW-tHS-tSH-tSH-cWW	0.00	-6824.00	8	8	Quadruple sheared
396	Motif group IL_24134.1 View motif instance in 3D Basepair signature: cWW-tSS-L-R-L-tHS-L-cWW-L-L	0.00	-6858.02	7	6	Kink-turn
397	Motif group IL_26222.2 View motif instance in 3D Basepair signature: cWW-cWS-cSH-tWH-R-L-R-cWW	0.00	-7000.48	6	5	C-loop with bulged stacked A's
398	Motif group IL_22373.1 View motif instance in 3D Basepair signature: cWW-L-R-cSH-cSH-cWW	0.00	-7197.19	5	5	8-nt loop receptor
399	Motif group IL_61440.1 View motif instance in 3D Basepair signature: cWW-tSH-tHS-tWS-cWW	0.00	-7575.92	9	6	Triple sheared
400	Motif group IL_78800.1 View motif instance in 3D Basepair signature: cWW-cSH-L-cWW	0.00	-8166.86	6	5
401	Motif group IL_63596.11 View motif instance in 3D Basepair signature: cWW-cWS-cSH-tWH-cWW-L	0.00	-8433.55	4	4	C-loop
402	Motif group IL_43644.1 View motif instance in 3D Basepair signature: cWW-cWW-L-R-cWW	0.00	-8489.02	7	5	Other IL
403	Motif group IL_02203.1 View motif instance in 3D Basepair signature: cWW-cSW-cWW-cWW	0.00	-8506.79	8	6
404	Motif group IL_17136.7 View motif instance in 3D Basepair signature: cWW-tSH-tHW-tHS-cWW	0.00	-8531.16	7	5	tSH-tWH-tHS
405	Motif group IL_50730.2 View motif instance in 3D Basepair signature: cWW-tSH-tHS-tHS-cWW	0.00	-9203.54	6	5	Triple sheared
406	Motif group IL_03109.3 View motif instance in 3D Basepair signature: cWW-cWS-tWH-cWW-L	0.00	-9999.00	5	3	C-loop
407	Motif group IL_10569.1 View motif instance in 3D Basepair signature: cWW-L-cWW	0.00	-9999.00	6	4
408	Motif group IL_28037.2 View motif instance in 3D Basepair signature: cWW-cWW-cWW	0.00	-9999.00	5	5	Isolated non-canonical cWW pair
409	Motif group IL_42771.1 View motif instance in 3D Basepair signature: cWW-cWW	0.00	-9999.00	6	4	Multiple bulged bases
410	Motif group IL_63775.1 View motif instance in 3D Basepair signature: cWW-L-cWW	0.00	-9999.00	8	4
411	Motif group IL_83150.2 View motif instance in 3D Basepair signature: cWW-tHH-cWW-L-L	0.00	-9999.00	5	4