RNA 3D Hub

JAR3D Query RF00168-3.98 completed
Run on Motif Atlas Version using the Rfam secondary structure. Run with the CaCoFold secondary structure.

Rfam family RF00168 maps to these 16 chains: 3D0U|1|A, 3D0X|1|A, 3DIG|1|X, 3DIL|1|A, 3DIM|1|A, 3DIO|1|X, 3DIQ|1|A, 3DIR|1|A, 3DIS|1|A, 3DIX|1|A, 3DIY|1|A, 3DIZ|1|A, 3DJ0|1|A, 3DJ2|1|A, 4ERJ|1|A, 4ERL|1|A See more about them at RNA 3D Hub by filtering on the chain or the Rfam family.

Loop 3 Internal loop

Column numbers: 26-39, 85-94 - View nucleotides in PDB file(s) 
    Scored sequences and counts

    
    G-AAGA--GUA--G*U-GGAAGG-C    3

    
    A-AUGA--CUA--A*U-GAAAGG-U    2

    
    C-AUCA--GUA--A*U-GAAAGG-G    2

    
    C-A--A--GUAA-C*U-GAGGGG-G    2

    
    C-AG----GUA--A*C-GAGGGG-G    2

    
    U-AUGAAUCUACGC*G-AGGAGG-A    1

    
    U-AUGA--AUC---*UAGAGGGGGA    1

    
    UCAAGA--GUA--A*U-GAAAGG-G    1

    
    UCAUCA--GUA--G*C-GAAAGG-G    1

    
    A-AAAA--GUA--G*U-GAAAGG-U    1

    
    A-AAGA--GUA--A*U-GAAAGG-G    1

    
    A-AAGA--GUA--A*U-GAAAGG-U    1

    
    A-AUAA--GUA--U*G-GAAAGG-U    1

    
    A-AUUA--GUA--A*U-GAAAGG-U    1

    
    A-AUUA--GUA--A*U-GGAAGG-U    1

    
    C-AAGA--GUA--C*G-GAAAGG-G    1

    
    C-AAGA--GUA--G*C-GAAAGG-G    1

    
    C-AAGA--GUA--G*U-GAAAGG-G    1

    
    C-AAGA--GUA--U*U-GAAAGG-G    1

    
    C-AAGA--GUC--G*U-UAAAGG-G    1

    
    C-AAUA--GUA--G*U-GAACGG-G    1

    
    C-ACAA--GUA--A*U-GAACAG-G    1

    
    C-ACUA--GUA--A*C-GAACAG-G    1

    
    C-ACUA--GUA--A*U-GAACAG-G    1

    
    C-AUCA--GUA--U*A-GAAAGG-G    1

    
    C-AUGA--GUA--A*U-AAAAGG-G    1

    
    C-AUGA--GUA--A*U-GAAAGG-G    1

    
    C-AUUA--GUA--A*U-GAAAGG-G    1

    
    G-AUAA--GUA--C*G-GAAAGG-C    1

    
    G-AUAA--GUA--U*G-GAAAGG-C    1

    
    G-AUGA--GUC--A*U-AAAAGG-C    1

    
    G-AUGA--GUC--G*C-AAAAGG-C    1

    
    U-AAGA--GUA--G*A-GAAAGG-A    1

    
    U-AUAA--GUA--A*U-GAAAGG-A    1

    
    U-AUAA--GUA--U*A-GAAAGG-A    1

    
    U-AUAA--GUA--U*G-GAAAGG-A    1

    
    U-AUAA--GUA--U*U-GAAAGG-A    1

    
    C-AG----GUAA-C*U-GAGGGG-G    1

    
    A-A-----GUAA-C*U-GAGGGG-G    1

    
    C-AG----GUA--G*U-GAGGGG-G    1

    
    GCAU----GUA--U*A-GAA-GG-U    1
Click on headings to reorder table
# Matching motif group Acceptance Rate Mean Cutoff Score Full Edit Distance Interior Edit Distance Basepair Diagram and most common annotation
1

Motif group IL_34470.3

Basepair signature:
cWW-cSH-cWW-tHH-tWH-tHS-cWW-tSH-R-cWW-L

78.72 26.78 4 2

9x8 Sarcin-Ricin with GA cWW pair; G-bulge

2

Motif group IL_70670.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-tWH-L-R-L

17.02 -34.55 8 5

9x9 Sarcin-Ricin with pseudoknotted region; G-bulge

3

Motif group IL_04346.10

Basepair signature:
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -70.56 5 4

8x7 Sarcin-Ricin; G-bulge

4

Motif group IL_61286.1

Basepair signature:
cWW-L-R-L-R-L-tWH-L-tHS-cWW

0.00 -72.14 6 4

8x6 Sarcin-Ricin with inserted A; G-bulge

5

Motif group IL_65594.1

Basepair signature:
cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW

0.00 -81.44 7 5

8x7 Sarcin-Ricin; G-bulge

6

Motif group IL_93889.1

Basepair signature:
cWW-R-tSH-L-cSH-L-L-R-L-R-L-R-L-R-L-R-L-L

0.00 -89.49 8 6

7

Motif group IL_42231.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-cSS-L

0.00 -90.83 10 7

8

Motif group IL_74746.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-cWW

0.00 -92.66 10 8

9

Motif group IL_43858.1

Basepair signature:
cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -93.53 10 7

10

Motif group IL_21630.1

Basepair signature:
cWW-L-R-L-R-L-R-cSH-R-tWH-R-cWW-cWW

0.00 -94.45 12 8

11

Motif group IL_29198.2

Basepair signature:
cWW-cWW-L-R-cSH-R-tWH-tHS-cWW

0.00 -95.99 8 5

7x7 Sarcin-Ricin with intercalated A; G-bulge

12

Motif group IL_36729.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-tWH-R-L-R-L-cWW

0.00 -98.87 12 8

13

Motif group IL_78349.3

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -99.33 9 6

14

Motif group IL_58126.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -99.39 10 7

15

Motif group IL_66663.1

Basepair signature:
cWW-L-tHS-tSW-tWH-cWH-cWW-L-cWW

0.00 -104.11 10 8

16

Motif group IL_59049.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -106.38 12 8

17

Motif group IL_84694.2

Basepair signature:
cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW

0.00 -113.81 9 7

tSH-tHW-tHH-tHS

18

Motif group IL_88116.2

Basepair signature:
cWW-tSH-L-R-L-R-L-R-cWW-cWW

0.00 -114.52 9 6

19

Motif group IL_80604.6

Basepair signature:
cWW-cWW-tWH-tWH-tHW-tHW-cWW

0.00 -117.63 10 7

20

Motif group IL_86012.1

Basepair signature:
cWW-tHS-tWH-cWH-cWW-L-L-cWW

0.00 -119.93 10 8

21

Motif group IL_58350.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW-L

0.00 -121.63 10 7

22

Motif group IL_85879.1

Basepair signature:
cWW-L-R-tHW-tHW-L-R-L-R-cWW-cWW

0.00 -121.79 12 10

23

Motif group IL_56455.6

Basepair signature:
cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW

0.00 -125.06 8 6

Bacterial 5S Loop E

24

Motif group IL_81392.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L

0.00 -126.30 15 12

25

Motif group IL_02349.4

Basepair signature:
cWW-tSH-tWH-cSH-tWH-tHS-cWW

0.00 -129.49 9 6

8x6 Sarcin-Ricin with bulged A; G-bulge

26

Motif group IL_46174.3

Basepair signature:
cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

0.00 -130.15 9 7

Kink-turn with non-sequential stacking

27

Motif group IL_13874.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWH-cHW-cWW

0.00 -130.21 9 7

28

Motif group IL_09129.2

Basepair signature:
cWW-L-R-tWH-L-R-L-tWW-cWW

0.00 -130.61 10 7

29

Motif group IL_68405.1

Basepair signature:
cWW-cSS-L-tWH-tHW-cWW-cWW

0.00 -131.02 10 7

Kink-turn related

30

Motif group IL_43467.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -131.03 12 10

Pseudoknot

31

Motif group IL_49867.1

Basepair signature:
cWW-cWW-L-R-L-R-tHW-R-L-L-cWW

0.00 -131.95 10 8

32

Motif group IL_43547.1

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-R-L-cWW-L-cWW

0.00 -132.11 9 8

10x8 Sarcin-Ricin; G-bulge

33

Motif group IL_69543.3

Basepair signature:
cWW-tSH-L-R-tSS-tHS-L-R-cWW

0.00 -132.33 7 6

34

Motif group IL_28304.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW

0.00 -135.76 12 9

35

Motif group IL_70801.1

Basepair signature:
cWW-cWW-L-R-tWW-L-R-L-cWW

0.00 -138.57 7 6

36

Motif group IL_04073.1

Basepair signature:
cWW-L-R-L-tSH-L-R-cWW-L-R-R-L-cWW-L

0.00 -140.48 13 11

37

Motif group IL_24254.1

Basepair signature:
cWW-cWW-tHH-cSH-tWH-tHS-cWW

0.00 -142.14 9 6

7x6 Sarcin-Ricin with UU cWW pair; G-bulge

38

Motif group IL_15107.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-L-L-L-cWW

0.00 -143.09 13 11

39

Motif group IL_04736.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -145.30 11 8

40

Motif group IL_95727.1

Basepair signature:
cWW-L-tSH-L-tHW-tHS-R-cWW-L

0.00 -146.86 10 7

Kink-turn

41

Motif group IL_45896.1

Basepair signature:
cWW-cWW-cWW

0.00 -147.31 12 10

42

Motif group IL_26307.2

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -148.68 6 4

7x6 Sarcin-Ricin; G-bulge

43

Motif group IL_28026.3

Basepair signature:
cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

0.00 -151.37 9 7

44

Motif group IL_89047.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWH-L-cWW

0.00 -151.74 11 10

45

Motif group IL_61249.1

Basepair signature:
cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

0.00 -151.88 12 10

46

Motif group IL_60797.1

Basepair signature:
cWW-cWW-tSH-tHW-tHW-L-R-L-cWW-cWW

0.00 -153.27 12 8

47

Motif group IL_04600.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-cWW-cWW

0.00 -156.89 10 7

48

Motif group IL_73002.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -160.18 13 12

49

Motif group IL_16665.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -161.13 11 8

50

Motif group IL_17069.5

Basepair signature:
cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

0.00 -161.72 9 7

Kink-turn related

51

Motif group IL_41756.4

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

0.00 -164.64 9 6

8x6 Sarcin-Ricin with inserted Y; G-bulge

52

Motif group IL_78472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -164.87 10 8

53

Motif group IL_31561.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW

0.00 -164.89 10 7

54

Motif group IL_31915.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -165.45 13 9

55

Motif group IL_20047.1

Basepair signature:
cWW-tSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -166.47 9 8

56

Motif group IL_68243.1

Basepair signature:
cWW-L-cWW-cWW-R-L-tHS-cWW

0.00 -168.38 11 9

57

Motif group IL_12745.1

Basepair signature:
cWW-tWH-tWH-tHW-tHW-cWW

0.00 -169.20 11 8

tWH-tWH-tHW-tHW

58

Motif group IL_18487.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-cWW

0.00 -170.30 9 6

59

Motif group IL_77278.1

Basepair signature:
cWW-tWW-L-tWW-cWW-L

0.00 -171.83 11 8

60

Motif group IL_54177.4

Basepair signature:
cWW-cSW-tWH-L-R-L-R-tHS-cWW

0.00 -174.64 10 9

61

Motif group IL_91698.1

Basepair signature:
cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW

0.00 -177.39 11 9

62

Motif group IL_85630.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L-cWW-L

0.00 -178.68 12 11

63

Motif group IL_19048.1

Basepair signature:
cWW-L-R-L-R-L-cSH-L-R-cWW-cWW

0.00 -180.83 12 9

64

Motif group IL_15991.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L

0.00 -182.99 14 12

65

Motif group IL_57741.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -183.01 11 10

66

Motif group IL_29357.1

Basepair signature:
cWW-L-R-L-R-cWH-tHW-cSH-cWW-L-L-cWW-R-R

0.00 -184.11 13 11

67

Motif group IL_59258.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW

0.00 -186.09 9 7

68

Motif group IL_32016.1

Basepair signature:
cWW-tSH-tSH-tSS-tHS-L-R-cWW

0.00 -186.10 8 7

Kink-turn

69

Motif group IL_64900.1

Basepair signature:
cWW-cWW-tSS-tSH-L-tHS-R-cWW-L

0.00 -187.17 10 8

Kink-turn

70

Motif group IL_77045.1

Basepair signature:
cWW-L-tSW-L-tHW-cWW-L

0.00 -187.27 10 7

Kink-turn

71

Motif group IL_37752.1

Basepair signature:
cWW-L-R-L-R-tHW-R-L-cWW

0.00 -187.42 13 11

72

Motif group IL_88269.4

Basepair signature:
cWW-tWW-cSH-tWH-tHS-cWW

0.00 -188.41 7 5

6x5 Sarcin-Ricin; G-bulge

73

Motif group IL_16458.4

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-cWW

0.00 -189.96 8 6

Sarcin-Ricin target in LSU H95; G-bulge

74

Motif group IL_65851.3

Basepair signature:
cWW-cWW-cWW-cWW-R-tHW-tSH-tHS-L

0.00 -193.59 12 9

75

Motif group IL_13358.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -194.90 10 9

76

Motif group IL_89099.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -195.27 11 8

Other IL

77

Motif group IL_47346.2

Basepair signature:
cWW-tSH-L-R-tHH-tHS-cWW

0.00 -195.52 10 6

tSH-tSH-tHH-tHS

78

Motif group IL_54041.2

Basepair signature:
cWW-L-R-L-R-tWH-L-cWW

0.00 -196.09 10 7

tHW-tHW cross-strand stack

79

Motif group IL_04638.3

Basepair signature:
cWW-tSH-tHW-tHS-cSH-cWW-L

0.00 -197.63 10 8

tSH-tHS-tHW

80

Motif group IL_67623.1

Basepair signature:
cWW-tSW-cSW-L-cSW-L-R-L-cWW-cWW

0.00 -198.16 12 8

Minor groove platform related

81

Motif group IL_69986.1

Basepair signature:
cWW-cHW-L-R-L-R-cWH-cWW

0.00 -199.50 9 8

82

Motif group IL_97697.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -200.00 11 9

Reverse turn

83

Motif group IL_04307.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -205.52 12 10

84

Motif group IL_69229.3

Basepair signature:
cWW-L-tSH-L-tHS-cWW-cWW

0.00 -205.91 9 8

Kink-turn

85

Motif group IL_59724.1

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW

0.00 -207.07 12 10

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

86

Motif group IL_85652.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L

0.00 -207.44 8 7

87

Motif group IL_64403.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -210.31 12 9

88

Motif group IL_77870.1

Basepair signature:
cWW-L-R-L-tHS-L-cWW-L-cWW

0.00 -210.34 10 9

89

Motif group IL_09570.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R

0.00 -214.22 12 9

90

Motif group IL_33886.1

Basepair signature:
cWW-L-cWW-L-R-L-R-cWW

0.00 -214.70 9 6

Kink-turn with embedded cWW pair

91

Motif group IL_57188.5

Basepair signature:
cWW-tWW-L-tWW-cWW-cSH

0.00 -214.90 9 7

Kink-turn related

92

Motif group IL_41853.1

Basepair signature:
cWW-L-tHH-L-tHS-L-cWW-L-L

0.00 -215.66 10 8

93

Motif group IL_04021.2

Basepair signature:
cWW-L-R-tSH-tSH-tHS-cWW-cWW

0.00 -215.74 10 9

Triple sheared with non-canonical cWW

94

Motif group IL_06029.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L

0.00 -215.81 14 12

Kink-turn

95

Motif group IL_71294.3

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -215.95 10 7

Double sheared; A in syn; two near cWW pairs

96

Motif group IL_34822.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -216.14 10 8

97

Motif group IL_23038.1

Basepair signature:
cWW-L-R-tWH-L-R-L-cWW-cWW

0.00 -216.54 12 9

98

Motif group IL_31084.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L

0.00 -217.26 8 7

99

Motif group IL_60448.1

Basepair signature:
cWW-L-cWW-L-R-L-tWH-L-tHS-L-R-L-cWW-L-R

0.00 -220.38 13 10

100

Motif group IL_33623.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L-R

0.00 -221.25 10 8

101

Motif group IL_42778.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -222.65 10 9

102

Motif group IL_09044.1

Basepair signature:
cWW-tSH-tHH-L-tHS-cWW

0.00 -224.24 10 8

103

Motif group IL_89312.1

Basepair signature:
cWW-tSH-L-cWS-cWW-L

0.00 -224.26 10 8

104

Motif group IL_85222.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -228.55 12 10

105

Motif group IL_82292.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -230.85 9 7

106

Motif group IL_49767.8

Basepair signature:
cWW-cWW-tWH-L-tHS-cWW

0.00 -233.42 8 5

UAA/GAN with extra cWW

107

Motif group IL_70923.9

Basepair signature:
cWW-tSS-tSH-L-tHS-tHS-cWW

0.00 -233.58 8 7

Kink-turn

108

Motif group IL_44438.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -235.97 9 8

109

Motif group IL_87284.1

Basepair signature:
cWW-tSH-tHW-tWH-tHS-cWW

0.00 -237.51 9 7

tSH-tHW-tWH-tHS

110

Motif group IL_05472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -239.76 15 12

111

Motif group IL_76308.6

Basepair signature:
cWW-tSH-tHW-tHS-cWW-cWW

0.00 -240.96 9 7

tSH-tWH-tHS-cWW

112

Motif group IL_69271.3

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R

0.00 -241.03 11 10

113

Motif group IL_37015.1

Basepair signature:
cWW-tSS-tSS-tHH-L-tHS-L-R-cWW-L

0.00 -241.11 10 9

Kink-turn

114

Motif group IL_00981.1

Basepair signature:
cWW-tWH-tHH-tHS-cWW

0.00 -241.73 10 6

UAA/GAN with tHH

115

Motif group IL_99692.2

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L-L

0.00 -242.44 10 8

Kink-turn

116

Motif group IL_73759.1

Basepair signature:
cWW-cSH-tHS-cWH-cHW-cWW

0.00 -243.31 12 9

Part of G-quadruplex

117

Motif group IL_80926.1

Basepair signature:
cWW-cWW-tSH-tHS-L-cWW

0.00 -245.30 9 8

118

Motif group IL_54050.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -245.41 12 10

119

Motif group IL_55953.3

Basepair signature:
cWW-tSH-tHS-R-L-L-R-cWW

0.00 -247.54 10 7

120

Motif group IL_85536.2

Basepair signature:
cWW-tSH-L-R-tHS-cWW-cWW

0.00 -247.66 10 8

121

Motif group IL_01038.1

Basepair signature:
cWW-tWH-L-R-tHS-cWW

0.00 -250.45 9 7

UAA/GAN with extra stack

122

Motif group IL_24499.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L-cSH-L

0.00 -250.63 11 9

123

Motif group IL_21667.1

Basepair signature:
cWW-tSH-L-R-L-cWW

0.00 -250.82 9 6

124

Motif group IL_74051.1

Basepair signature:
cWW-tSS-tSH-L-tHS-cWW-L

0.00 -252.32 11 8

Kink-turn

125

Motif group IL_01488.3

Basepair signature:
cWW-tSS-tSH-L-R-tHS-L-cWW

0.00 -255.14 8 7

Kink-turn

126

Motif group IL_25186.4

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -263.63 9 7

127

Motif group IL_94910.1

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L

0.00 -264.12 10 9

Kink-turn

128

Motif group IL_97631.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.00 -267.20 11 8

Triple sheared related

129

Motif group IL_96788.1

Basepair signature:
cWW-tHW-tHS-cWW-cWW

0.00 -267.27 9 7

130

Motif group IL_20245.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -270.80 18 15

131

Motif group IL_33141.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -271.42 13 11

132

Motif group IL_82426.6

Basepair signature:
cWW-cHW-R-L-cHW-cHW-cHW-L-cWW-R

0.00 -272.28 11 8

133

Motif group IL_53581.1

Basepair signature:
cWW-tWW-L-tWH-cSS-tSS-tWH-cSS-tWH-R-tSS-R-L-L-cWW-L-cWW

0.00 -275.42 14 10

Kink-turn related

134

Motif group IL_09908.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L

0.00 -278.44 10 8

Reverse kink-turn

135

Motif group IL_13394.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -280.55 16 13

136

Motif group IL_62654.1

Basepair signature:
cWW-tSH-tHH-tHS-cWW

0.00 -282.52 10 7

tSH-tHH-tHS

137

Motif group IL_91636.1

Basepair signature:
cWW-tSH-L-R-L-cWW-L-L

0.00 -282.87 13 10

138

Motif group IL_73700.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-tHS-cWW

0.00 -283.27 12 10

139

Motif group IL_29223.1

Basepair signature:
cWW-L-R-L-cWW-cWW-cWW

0.00 -283.59 13 10

140

Motif group IL_80231.1

Basepair signature:
cWW-L-R-L-R-L-R-tHS-cWW

0.00 -283.70 11 9

Other IL

141

Motif group IL_60657.1

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R-L-R-L-R

0.00 -284.69 13 11

142

Motif group IL_70627.3

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -285.28 10 8

UAA/GAN related

143

Motif group IL_96332.5

Basepair signature:
cWW-cWW-L-R-L-cWW-L

0.00 -285.61 9 7

144

Motif group IL_22829.2

Basepair signature:
cWW-L-tHS-L-R-L-cWW-L

0.00 -288.44 11 8

145

Motif group IL_12697.1

Basepair signature:
cWW-cWW-L-R-tHS-cWW

0.00 -293.42 10 8

146

Motif group IL_19516.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW-L-L-L-R-L-R

0.00 -294.34 15 11

Pseudoknot

147

Motif group IL_22854.4

Basepair signature:
cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

0.00 -295.63 12 9

148

Motif group IL_06136.2

Basepair signature:
cWW-tHS-cWW-tHS-tSH-tSH-cWW

0.00 -295.72 9 6

Quadruple sheared

149

Motif group IL_44874.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L-L

0.00 -296.25 12 10

tSH-tHW

150

Motif group IL_99498.1

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -301.14 12 10

151

Motif group IL_01176.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -301.62 11 9

152

Motif group IL_56317.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -301.68 12 10

153

Motif group IL_81731.1

Basepair signature:
cWW-cWW-L-R-L-R-L-cWW-L-tWW-L-R-L

0.00 -304.11 13 10

154

Motif group IL_94351.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.00 -305.02 13 10

155

Motif group IL_20463.1

Basepair signature:
cWW-tSH-tHW-cSH-tHH-cWH-L-R-cWW-L-L-R

0.00 -307.92 12 10

7x11 Sarcin-Ricin with pseudoknotted region; G-bulge

156

Motif group IL_83149.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -312.88 16 14

157

Motif group IL_54737.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -315.25 17 16

158

Motif group IL_21001.1

Basepair signature:
cWW-L-R-tHW-L-cWW

0.00 -317.78 10 7

159

Motif group IL_87290.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L

0.00 -317.78 13 11

Kink-turn related

160

Motif group IL_61242.1

Basepair signature:
cWW-cWW-L-R-L-R-cWW

0.00 -319.41 12 9

161

Motif group IL_49612.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L

0.00 -319.99 10 8

162

Motif group IL_22564.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -323.31 10 8

163

Motif group IL_51265.3

Basepair signature:
cWW-tSS-tHS-tSH-cWW-L

0.00 -326.84 9 7

Kink-turn from U4

164

Motif group IL_45444.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -328.26 11 9

165

Motif group IL_06691.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L

0.00 -331.77 11 8

166

Motif group IL_70411.2

Basepair signature:
cWW-tSH-L-tHH-L-cWW

0.00 -335.62 10 8

167

Motif group IL_64858.3

Basepair signature:
cWW-cHW-cWH-R-L-cWH-cHW-cHW-cWH-cWH-cHW-L-cWW-L-R-cWW-L-cWW

0.00 -337.89 13 11

168

Motif group IL_80412.1

Basepair signature:
cWW-tSW-L-cWW-L-L-R-L

0.00 -340.16 12 10

169

Motif group IL_50715.3

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L

0.00 -340.95 15 12

170

Motif group IL_29471.1

Basepair signature:
cWW-cWW-L-tHS-L-cWW

0.00 -344.83 11 9

171

Motif group IL_69145.3

Basepair signature:
cWW-L-cWW-L-R-L-R-R

0.00 -362.78 11 9

Pseudoknot

172

Motif group IL_29826.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-cSH-R-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -364.86 19 17

173

Motif group IL_16218.2

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -377.69 11 8

174

Motif group IL_74367.1

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -385.48 13 9

175

Motif group IL_17973.1

Basepair signature:
cWW-cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R

0.00 -391.13 15 14

176

Motif group IL_88974.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -405.33 12 10

177

Motif group IL_64842.1

Basepair signature:
cWW-L-tWH-L-cWW-L-cSH

0.00 -407.25 10 9

178

Motif group IL_85498.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -407.90 13 10

179

Motif group IL_54896.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -412.14 13 10

180

Motif group IL_74184.1

Basepair signature:
cWW-L-tHS-L-cWW-L-L-L

0.00 -416.94 12 10

181

Motif group IL_80209.1

Basepair signature:
cWW-cHW-L-cWW-L-L-R-L-R-L

0.00 -419.75 12 10

182

Motif group IL_18472.4

Basepair signature:
cWW-tSW-R-L-R-L-R-cWW

0.00 -420.44 11 7

183

Motif group IL_61440.1

Basepair signature:
cWW-tSH-tHS-tWS-cWW

0.00 -424.96 10 9

Triple sheared

184

Motif group IL_37603.1

Basepair signature:
cWW-L-cWW-L-cWW-L-L

0.00 -425.69 11 10

185

Motif group IL_84665.1

Basepair signature:
cWW-L-cSW-cWW-L-L-R-L-R-L-R-L

0.00 -428.21 12 10

186

Motif group IL_05192.4

Basepair signature:
cWW-L-R-L-R-L-cWW-L

0.00 -433.20 10 8

187

Motif group IL_21200.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L

0.00 -433.66 10 8

tSH-tHW

188

Motif group IL_30730.1

Basepair signature:
cWW-cSH-L-R-L-cWW-L-R

0.00 -435.37 13 11

189

Motif group IL_86136.1

Basepair signature:
cWW-tSH-L-cWW-L-L-R-L

0.00 -438.25 10 9

190

Motif group IL_66798.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.00 -444.96 10 8

AAA cross-strand stack

191

Motif group IL_95811.1

Basepair signature:
cWW-L-cWW-L-cWW-L-R-L

0.00 -445.00 12 11

Vitamin B12 Aptamer

192

Motif group IL_38969.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -447.50 13 11

Reverse kink-turn related

193

Motif group IL_31558.1

Basepair signature:
cWW-L-tHS-L-R-cWW

0.00 -449.45 10 9

194

Motif group IL_34737.1

Basepair signature:
cWW-L-cHW-L-cWW-L

0.00 -449.63 10 8

195

Motif group IL_70096.1

Basepair signature:
cWW-L-cWW-cWW

0.00 -450.41 12 10

Kink-turn related

196

Motif group IL_76460.1

Basepair signature:
cWW-cWW-L-tHS-L-R-L-cWW-L-L-R-L-L-R-L-R-L-R

0.00 -456.35 17 15

197

Motif group IL_06300.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -457.78 11 9

198

Motif group IL_38507.2

Basepair signature:
cWW-tWH-L-tHS-cWW

0.00 -459.50 8 7

UAA/GAN

199

Motif group IL_75294.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -462.88 10 8

200

Motif group IL_90346.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -465.26 9 8

201

Motif group IL_34739.3

Basepair signature:
cWW-tWW-tWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -468.98 19 17

202

Motif group IL_51191.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -469.36 10 9

203

Motif group IL_82683.2

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -470.14 9 7

204

Motif group IL_82706.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -472.31 13 10

205

Motif group IL_62012.1

Basepair signature:
cWW-cWW-L-R-L-cWW

0.00 -478.95 11 9

Decoding loop related

206

Motif group IL_74957.1

Basepair signature:
cWW-L-cHW-L-cWW-L

0.00 -487.63 11 10

cWH basepair with bulged bases

207

Motif group IL_91592.1

Basepair signature:
cWW-L-tHH-L-cWW-L-L

0.00 -492.93 10 8

208

Motif group IL_47108.1

Basepair signature:
cWW-L-R-L-tHH-L-cWW

0.00 -496.50 11 9

209

Motif group IL_88082.1

Basepair signature:
cWW-L-tSS-L-cWW-L

0.00 -497.16 12 8

210

Motif group IL_76758.2

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -502.21 12 9

Intercalated tWH

211

Motif group IL_63519.1

Basepair signature:
cWW-cWW-L-R-cSH-cWW

0.00 -505.20 12 9

212

Motif group IL_89021.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.00 -506.30 9 7

UAA/GAN

213

Motif group IL_68909.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -506.82 10 7

214

Motif group IL_17948.2

Basepair signature:
cWW-L-R-tSH-tHS-cWW

0.00 -510.78 10 8

Double sheared with non-canonical cWW

215

Motif group IL_11399.2

Basepair signature:
cWW-cHW-L-R-L-cWW

0.00 -519.46 10 8

216

Motif group IL_17136.7

Basepair signature:
cWW-tSH-tHW-tHS-cWW

0.00 -520.38 8 7

tSH-tWH-tHS

217

Motif group IL_67780.1

Basepair signature:
cWW-cSH-L-R-L-L-R-L

0.00 -525.03 12 9

218

Motif group IL_26728.3

Basepair signature:
cWW-cSH-R-cSH-cWW-cWW

0.00 -525.13 12 10

219

Motif group IL_49751.4

Basepair signature:
cWW-cWW-cWW-cWW-cWW

0.00 -544.21 10 8

Triple non-canonical cWW pairs

220

Motif group IL_91920.1

Basepair signature:
cWW-cWW-tHH-cWW

0.00 -547.95 12 9

221

Motif group IL_11344.2

Basepair signature:
cWW-cSS-L-cWW

0.00 -580.77 10 9

180 degree turn

222

Motif group IL_38634.5

Basepair signature:
cWW-cWH-L-R-cWW

0.00 -580.92 10 9

cWH basepair and non-canonical AC

223

Motif group IL_50730.2

Basepair signature:
cWW-tSH-tHS-tHS-cWW

0.00 -586.13 8 7

Triple sheared

224

Motif group IL_73789.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -587.68 11 9

225

Motif group IL_07173.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -592.44 11 9

226

Motif group IL_43622.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -602.81 12 10

227

Motif group IL_48444.6

Basepair signature:
cWW-L-R-cWW-cWW

0.00 -611.12 9 8

228

Motif group IL_69000.1

Basepair signature:
cWW-L-cWW-L-cWW-L

0.00 -617.14 13 10

229

Motif group IL_65718.4

Basepair signature:
cWW-cSH-cWS-cWW-cWW

0.00 -621.43 13 11

230

Motif group IL_65653.1

Basepair signature:
cWW-tSW-tHW-tWW-tWH-cSH-L-L-tHS-L-cWW-L

0.00 -628.91 12 9

231

Motif group IL_12566.4

Basepair signature:
cWW-L-tHS-L-cWW-L

0.00 -659.43 11 8

232

Motif group IL_96236.1

Basepair signature:
cWW-tWW-cWW-L-cWW

0.00 -663.43 12 9

233

Motif group IL_11415.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -667.41 13 11

234

Motif group IL_71598.1

Basepair signature:
cWW-tSH-L-cWW-L

0.00 -679.18 11 9

235

Motif group IL_68574.4

Basepair signature:
cWW-tHH-tHS-cWW

0.00 -690.27 10 8

236

Motif group IL_98347.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -691.80 11 8

237

Motif group IL_59302.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -704.48 11 9

238

Motif group IL_10484.1

Basepair signature:
cWW-tSH-tHS-cWW

0.00 -710.59 10 8

Double sheared

239

Motif group IL_23774.1

Basepair signature:
cWW-L-R-L-tHS-cWW

0.00 -713.51 9 8

UAA/GAN variation

240

Motif group IL_70335.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -717.33 12 10

241

Motif group IL_67767.4

Basepair signature:
cWW-tWH-cWW-cSH-cWW

0.00 -729.83 11 9

Receptor of 11-nt loop-receptor motif

242

Motif group IL_77691.5

Basepair signature:
cWW-tSH-L-R-L-cWW

0.00 -741.66 9 8

UAA/GAN related

243

Motif group IL_53448.1

Basepair signature:
cWW-tWH-cSH-cWW

0.00 -747.35 11 9

Receptor of 11-nt loop-receptor motif

244

Motif group IL_38862.4

Basepair signature:
cWW-cSH-R-tWH-tHS-cWW

0.00 -748.06 10 8

5x5 Sarcin-Ricin with intercalated A; G-bulge

245

Motif group IL_64231.5

Basepair signature:
cWW-cWW-L-R-L-cWW

0.00 -751.14 9 8

246

Motif group IL_04785.1

Basepair signature:
cWW-L-R-L-R-cWW

0.00 -773.58 11 9

247

Motif group IL_13404.2

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -775.96 11 9

Tandem non-canonical cWW pairs

248

Motif group IL_04332.3

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -778.87 14 12

249

Motif group IL_14177.2

Basepair signature:
cWW-L-R-L-cWW

0.00 -789.19 11 9

250

Motif group IL_19668.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -790.55 10 9

Isolated non-canonical cWW pair

251

Motif group IL_09705.15

Basepair signature:
cWW-tSH-tHS-cWW

0.00 -801.75 10 9

Double sheared

252

Motif group IL_10389.1

Basepair signature:
cWW-L-cWW-L-cWW

0.00 -812.96 12 10

253

Motif group IL_84251.1

Basepair signature:
cWW-L-tHS-cWW

0.00 -816.34 10 9

254

Motif group IL_88072.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -822.89 13 9

255

Motif group IL_58112.2

Basepair signature:
cWW-cWW-L-R-cWW

0.00 -824.27 10 8

256

Motif group IL_02203.1

Basepair signature:
cWW-cSW-cWW-cWW

0.00 -828.13 13 10

257

Motif group IL_47972.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -831.64 11 9

258

Motif group IL_42218.2

Basepair signature:
cWW-L-R-cHW-cWW-L-L-L-R-L

0.00 -852.78 13 11

259

Motif group IL_97273.1

Basepair signature:
cWW-tSH-cWW-L-cWW-L

0.00 -853.23 12 10

260

Motif group IL_99646.2

Basepair signature:
cWW-tWH-tHS-cWW

0.00 -854.43 10 9

tSH-tHW

261

Motif group IL_43644.1

Basepair signature:
cWW-cWW-L-R-cWW

0.00 -858.22 12 11

Other IL

262

Motif group IL_33323.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -879.42 10 9

263

Motif group IL_28564.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -955.39 12 11

264

Motif group IL_85033.2

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -957.95 9 8

Tandem non-canonical cWW pairs

265

Motif group IL_42314.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -959.59 10 9

266

Motif group IL_25872.4

Basepair signature:
cWW-cWW-cWH-cWW

0.00 -960.13 10 8

267

Motif group IL_76319.5

Basepair signature:
cWW-L-R-L-cWW

0.00 -968.21 12 11

268

Motif group IL_51479.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -973.37 11 9

269

Motif group IL_49061.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -990.35 10 9

270

Motif group IL_89984.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -1001.76 13 11

271

Motif group IL_61476.2

Basepair signature:
cWW-tSH-L-cWW-L

0.00 -1012.20 10 9

272

Motif group IL_66997.2

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -1016.81 11 9

273

Motif group IL_15698.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -1025.97 10 9

274

Motif group IL_77658.1

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -1045.88 12 11

Tandem non-canonical cWW pairs

275

Motif group IL_07785.1

Basepair signature:
cWW-cWW-cWW

0.00 -1046.91 11 10

Isolated non-canonical cWW pair

276

Motif group IL_90351.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -1082.87 11 9

277

Motif group IL_46387.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -1083.33 11 10

278

Motif group IL_69440.3

Basepair signature:
cWW-L-R-cSH-cWW

0.00 -1087.87 10 9

279

Motif group IL_55516.2

Basepair signature:
cWW-cWW-cSH-cWW

0.00 -1090.74 11 9

280

Motif group IL_28788.1

Basepair signature:
cWW-L-R-cWW

0.00 -1094.59 12 10

281

Motif group IL_03350.1

Basepair signature:
cWW-tWH-cWW-L-L-cWW-L-L-L

0.00 -1094.65 11 10

Reverse kink-turn related

282

Motif group IL_19102.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -1118.51 10 9

283

Motif group IL_51387.2

Basepair signature:
cWW-cSH-cWW-cWW

0.00 -1148.21 11 10

284

Motif group IL_96759.1

Basepair signature:
cWW-tSH-tWW-cWW

0.00 -1154.83 11 10

285

Motif group IL_92446.2

Basepair signature:
cWW-cWW-R-L-L

0.00 -1177.77 12 11

286

Motif group IL_41344.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -1234.54 11 10

287

Motif group IL_61341.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -1272.81 11 10

288

Motif group IL_99358.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -1277.38 11 9

289

Motif group IL_08770.1

Basepair signature:
cWW-L-R-cWW

0.00 -1326.71 12 10

290

Motif group IL_61299.4

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -1333.45 11 9

291

Motif group IL_14688.1

Basepair signature:
cWW-cWW-cWW

0.00 -1347.49 11 10

Isolated non-canonical cWW pair

292

Motif group IL_36516.3

Basepair signature:
cWW-cWW-cSH-cWW-L

0.00 -1363.78 10 9

293

Motif group IL_87907.2

Basepair signature:
cWW-cWW-cWW

0.00 -1442.22 11 10

Isolated non-canonical cWW pair

294

Motif group IL_09990.4

Basepair signature:
cWW-L-R-L-cWW

0.00 -1453.02 13 12

295

Motif group IL_31531.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -1471.08 11 10

Decoding loop related

296

Motif group IL_96371.1

Basepair signature:
cWW-tHH-cWW

0.00 -1796.63 12 11

297

Motif group IL_57744.1

Basepair signature:
cWW-cWW-cWW

0.00 -1862.53 10 10

Isolated non-canonical cWW pair

298

Motif group IL_10167.6

Basepair signature:
cWW-cHW-cWW

0.00 -1867.03 11 10

Isolated cWH basepair

299

Motif group IL_67095.2

Basepair signature:
cWW-tWW-cWW

0.00 -1892.22 11 10

Isolated tWW turn

300

Motif group IL_42997.3

Basepair signature:
cWW-L-R-cWW

0.00 -1902.77 11 10

Isolated cWS basepair

301

Motif group IL_85599.2

Basepair signature:
cWW-tHS-cWW

0.00 -1907.24 12 11

Isolated tHS basepair with bulges

302

Motif group IL_44465.1

Basepair signature:
cWW-L-R-cWW

0.00 -1907.29 11 10

Isolated non-canonical cWW contact

303

Motif group IL_80298.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -4073.01 20 19

304

Motif group IL_31504.1

Basepair signature:
cWW-cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -4295.34 15 13

305

Motif group IL_79846.1

Basepair signature:
cWW-R-L-L-tWH-cWW-L-L-L-R-L-R-cSH-L-L

0.00 -4362.20 15 14

306

Motif group IL_84409.1

Basepair signature:
cWW-tSS-L-cWH-L-cSH-cHW-tWH-cSS-tWH-tSW-cWS-R-L-R-cSH-R-cWW-L

0.00 -4475.37 13 12

307

Motif group IL_96303.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-R

0.00 -4684.09 17 15

308

Motif group IL_75283.2

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

0.00 -4704.14 12 10

309

Motif group IL_30441.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-L-R

0.00 -4859.10 17 15

310

Motif group IL_07469.2

Basepair signature:
cWW-tSH-cWW-cSH-R-cWW

0.00 -5087.84 9 8

311

Motif group IL_64048.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R

0.00 -5153.19 12 11

312

Motif group IL_43140.1

Basepair signature:
cWW-L-cWW-cWH-L-L

0.00 -5153.94 13 12

313

Motif group IL_04650.2

Basepair signature:
cWW-cWW-L-cWW-L-R-L-L-cSH

0.00 -5178.86 15 12

314

Motif group IL_32056.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R-L

0.00 -5180.98 14 10

315

Motif group IL_49971.1

Basepair signature:
cWW-cWH-cWW-cWW-L-L-R

0.00 -5186.75 12 10

316

Motif group IL_19852.1

Basepair signature:
cWW-tWH-cWW-cWH-cWH-cWH

0.00 -5204.41 14 12

Part of G-quadruplex

317

Motif group IL_44624.1

Basepair signature:
cWW-tWH-cWW-L-cWW-tSS-cSS-cWW-L

0.00 -5213.01 11 10

318

Motif group IL_17765.1

Basepair signature:
cWW-tWH-cHW-L-tSS-cSS-cWW-R-L

0.00 -5230.82 11 10

319

Motif group IL_53787.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -5237.50 15 14

Pseudoknot

320

Motif group IL_81516.2

Basepair signature:
cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -5285.85 12 10

321

Motif group IL_42032.1

Basepair signature:
cWW-cSH-cWW-tWH-L-cWW-L-L

0.00 -5321.74 11 9

322

Motif group IL_00555.1

Basepair signature:
cWW-cWS-cWW-L-R

0.00 -5344.44 11 9

323

Motif group IL_19897.3

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L

0.00 -5346.20 11 10

324

Motif group IL_47087.1

Basepair signature:
cWW-L-cWW-L-cWW-tWH-L-L

0.00 -5507.16 12 10

Kink-turn related

325

Motif group IL_21173.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

0.00 -5583.88 14 11

326

Motif group IL_55917.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -5728.66 12 10

327

Motif group IL_52743.1

Basepair signature:
cWW-tSW-L-cSW-L-cWW-L

0.00 -5796.98 11 9

328

Motif group IL_15218.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L

0.00 -5809.93 12 10

329

Motif group IL_53596.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -5819.96 14 11

330

Motif group IL_58960.1

Basepair signature:
cWW-L-cWW-L-tWW-L-R-L

0.00 -5958.52 12 9

331

Motif group IL_82968.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

0.00 -5967.87 12 10

332

Motif group IL_58103.11

Basepair signature:
cWW-cSH-cWS-L-tSW-R-R-cWW

0.00 -5973.64 12 10

Symmetric double minor groove platform

333

Motif group IL_24134.1

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-L

0.00 -6169.49 11 8

Kink-turn

334

Motif group IL_46112.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -6179.40 13 11

335

Motif group IL_27393.10

Basepair signature:
cWW-L-cWW-L-L-R-L-R

0.00 -6185.64 12 11

336

Motif group IL_18354.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R

0.00 -6245.46 13 11

337

Motif group IL_33711.1

Basepair signature:
cWW-cSH-cWW-L-L-R-L

0.00 -6428.13 12 10

Minor groove platform

338

Motif group IL_88017.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -6441.02 12 9

339

Motif group IL_26598.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R

0.00 -6560.97 12 9

340

Motif group IL_25412.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -6693.54 12 10

Major groove intercalation

341

Motif group IL_26222.2

Basepair signature:
cWW-cWS-cSH-tWH-R-L-R-cWW

0.00 -6867.11 11 9

C-loop with bulged stacked A's

342

Motif group IL_99380.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -7131.71 13 12

343

Motif group IL_38394.1

Basepair signature:
cWW-tWH-cWW-L-L-R-L

0.00 -7220.70 12 11

344

Motif group IL_94684.1

Basepair signature:
cWW-tWH-R-L-cWW-L-L

0.00 -7276.79 10 9

345

Motif group IL_22373.1

Basepair signature:
cWW-L-R-cSH-cSH-cWW

0.00 -7301.65 13 11

8-nt loop receptor

346

Motif group IL_01994.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWW

0.00 -7324.20 12 10

347

Motif group IL_46086.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -7410.66 11 9

348

Motif group IL_41203.4

Basepair signature:
cWW-L-cWW-L-L-R-cSH

0.00 -7503.59 12 11

SSU/LSU pseudoknot

349

Motif group IL_25573.1

Basepair signature:
cWW-tSW-L-cWW-L-L

0.00 -7565.67 12 9

350

Motif group IL_92634.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -7621.78 12 10

351

Motif group IL_87211.1

Basepair signature:
cWW-cSW-L-cWW-L

0.00 -7729.82 11 10

352

Motif group IL_49714.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -7738.11 12 9

Major groove intercalation

353

Motif group IL_70376.1

Basepair signature:
cWW-L-cWW-L

0.00 -8074.88 12 11

354

Motif group IL_95570.1

Basepair signature:
cWW-cWH-R-L-cWW

0.00 -8289.26 11 10

355

Motif group IL_38186.6

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -8358.94 12 10

356

Motif group IL_78800.1

Basepair signature:
cWW-cSH-L-cWW

0.00 -8377.19 12 11

357

Motif group IL_07039.3

Basepair signature:
cWW-L-cWW

0.00 -8447.47 12 12

Major groove platform

358

Motif group IL_63596.11

Basepair signature:
cWW-cWS-cSH-tWH-cWW-L

0.00 -8787.69 11 10

C-loop

359

Motif group IL_26685.1

Basepair signature:
cWW-L-cWW-L

0.00 -8837.94 12 10

Multiple bulged bases

360

Motif group IL_80398.1

Basepair signature:
cWW-L-cSW-L-R-cWW

0.00 -9013.76 10 9

Minor groove platform

361

Motif group IL_31737.3

Basepair signature:
cWW-L-cWW

0.00 -9088.16 11 10

Stack and bulge

362

Motif group IL_10796.1

Basepair signature:
cWW-L-R-cWW

0.00 -9196.06 13 13

363

Motif group IL_28037.2

Basepair signature:
cWW-cWW-cWW

0.00 -9208.91 12 12

Isolated non-canonical cWW pair

364

Motif group IL_44325.1

Basepair signature:
cWW-cWH-cWW-L

0.00 -9365.80 12 11

365

Motif group IL_06549.2

Basepair signature:
cWW-cWW

0.00 -9665.99 10 9

366

Motif group IL_61438.4

Basepair signature:
cWW-L-cWW

0.00 -9716.64 12 11

367

Motif group IL_07171.1

Basepair signature:
cWW-L-cWW-L

0.00 -9792.84 12 11

Bulged stacked bases

368

Motif group IL_57881.1

Basepair signature:
cWW-L-cWW

0.00 -9862.31 11 10

Multiple bulged bases

369

Motif group IL_81522.2

Basepair signature:
cWW-L-L-cWW

0.00 -9938.93 11 10

Major groove minor groove platform with intercalation; mini C-loop

370

Motif group IL_84476.1

Basepair signature:
cWW-cWW

0.00 -9973.32 12 11

Multiple bulged bases

371

Motif group IL_00225.13

Basepair signature:
cWW-L-cWW

0.00 -9999.00 12 12

Single bulged G

372

Motif group IL_00881.1

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 12 11

373

Motif group IL_02555.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 11 11

Major groove platform with intercalation

374

Motif group IL_03109.3

Basepair signature:
cWW-cWS-tWH-cWW-L

0.00 -9999.00 11 11

C-loop

375

Motif group IL_10569.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 13 12

376

Motif group IL_14368.1

Basepair signature:
cWW-L-cWW-cSH

0.00 -9999.00 12 11

Major groove platform with intercalated tWH

377

Motif group IL_15052.4

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 11 11

Minor groove platform

378

Motif group IL_16386.4

Basepair signature:
cWW-L-cWW

0.00 -9999.00 13 12

379

Motif group IL_20031.1

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 13 11

380

Motif group IL_22551.4

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 13 11

381

Motif group IL_25463.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -9999.00 12 10

382

Motif group IL_26793.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 13 12

Single stack bend

383

Motif group IL_29346.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -9999.00 12 11

Left turn

384

Motif group IL_31462.6

Basepair signature:
cWW-L-cWW

0.00 -9999.00 12 12

Single bulged A

385

Motif group IL_33761.2

Basepair signature:
cWW-L-cWW

0.00 -9999.00 12 11

386

Motif group IL_42626.2

Basepair signature:
cWW-cWW

0.00 -9999.00 12 10

387

Motif group IL_42771.1

Basepair signature:
cWW-cWW

0.00 -9999.00 12 12

Multiple bulged bases

388

Motif group IL_47074.2

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 11 11

389

Motif group IL_47078.3

Basepair signature:
cWW-cWS-L-cWW-L

0.00 -9999.00 13 11

Minor groove platform

390

Motif group IL_48076.6

Basepair signature:
cWW-cSH-cWW

0.00 -9999.00 12 11

Major groove platform

391

Motif group IL_50694.7

Basepair signature:
cWW-tSH-cWW-L

0.00 -9999.00 12 11

Major groove platform; stack outside cWW

392

Motif group IL_51454.3

Basepair signature:
cWW-cSH-cWW

0.00 -9999.00 12 11

Minor groove platform

393

Motif group IL_56987.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 13 11

394

Motif group IL_59877.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 11 11

395

Motif group IL_61258.15

Basepair signature:
cWW-L-cWW

0.00 -9999.00 13 13

Single bulged C

396

Motif group IL_63775.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 14 13

397

Motif group IL_66635.5

Basepair signature:
cWW-L-cWW

0.00 -9999.00 11 11

Major groove intercalation

398

Motif group IL_68140.4

Basepair signature:
cWW-cSH-cWW

0.00 -9999.00 11 10

Major groove minor groove platform; mini C-loop

399

Motif group IL_73355.1

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 12 11

400

Motif group IL_73452.2

Basepair signature:
cWW-L-cWW

0.00 -9999.00 12 10

401

Motif group IL_76709.2

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 12 11

402

Motif group IL_79895.1

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 13 11

403

Motif group IL_81831.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 12 11

Intercalated cWS

404

Motif group IL_82107.4

Basepair signature:
cWW-cWW

0.00 -9999.00 11 10

Multiple bulged bases

405

Motif group IL_82741.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -9999.00 12 11

406

Motif group IL_83150.2

Basepair signature:
cWW-tHH-cWW-L-L

0.00 -9999.00 11 9

407

Motif group IL_83389.2

Basepair signature:
cWW-cWW

0.00 -9999.00 11 10

408

Motif group IL_89505.4

Basepair signature:
cWW-L-cWW

0.00 -9999.00 12 12

Single bulged U

409

Motif group IL_90729.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 12 11

Single stack bend

410

Motif group IL_94967.1

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 14 11

411

Motif group IL_95583.2

Basepair signature:
cWW-L-cWW

0.00 -9999.00 11 11

Minor groove platform, major groove intercalation

Coloring options: